BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2324 (PAB2324) DE:Hypothetical protein
         (112 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75189 hypothetical protein PAB2324 - Pyrococcus abyssi (st...   219  1e-56
pir||F71158 hypothetical protein PH0468 - Pyrococcus horikoshii ...   108  3e-23
sp|Q59073|YG79_METJA HYPOTHETICAL PROTEIN MJ1679 >gi|2129015|pir...    72  2e-12

>pir||D75189 hypothetical protein PAB2324 - Pyrococcus abyssi (strain Orsay)
           >gi|5457472|emb|CAB48963.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 112
           
 Score =  219 bits (551), Expect = 1e-56
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MVITMAQAVEAPVSVRLPKYIIRKIDELVEKGEFKSRSDFIKYAVTLALGQIMMEQAREL 60
           MVITMAQAVEAPVSVRLPKYIIRKIDELVEKGEFKSRSDFIKYAVTLALGQIMMEQAREL
Sbjct: 1   MVITMAQAVEAPVSVRLPKYIIRKIDELVEKGEFKSRSDFIKYAVTLALGQIMMEQAREL 60

Query: 61  ARKITPEEAQVRSKEALQKLLAAEIDEWPEEDIKELLEDIDKKWKKLKGARK 112
           ARKITPEEAQVRSKEALQKLLAAEIDEWPEEDIKELLEDIDKKWKKLKGARK
Sbjct: 61  ARKITPEEAQVRSKEALQKLLAAEIDEWPEEDIKELLEDIDKKWKKLKGARK 112


>pir||F71158 hypothetical protein PH0468 - Pyrococcus horikoshii
           >gi|3256872|dbj|BAA29555.1| (AP000002) 108aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 108
           
 Score =  108 bits (266), Expect = 3e-23
 Identities = 57/108 (52%), Positives = 79/108 (72%), Gaps = 2/108 (1%)

Query: 2   VITMAQAVEAPVSVRLPKYIIRKIDELVEKGEFKSRSDFIKYAVTLALGQIMMEQARELA 61
           ++ +  AV+ P+SVRLP Y++ KIDELV+K +F+SRSDFIK+AVT ALGQIMME+ARE A
Sbjct: 1   MMAVENAVDYPISVRLPSYVVEKIDELVKKRKFRSRSDFIKFAVTFALGQIMMEEARERA 60

Query: 62  RKITPEEAQVRSKEALQKLLAAEIDEWPEEDIKELLEDIDKKWKKLKG 109
            K  PEE +   KEA  +L A +  +  EE + ELL+ +D ++K+L G
Sbjct: 61  -KNEPEELEKERKEAWMRLRAGDFSKEDEETL-ELLKKVDARYKRLGG 106


>sp|Q59073|YG79_METJA HYPOTHETICAL PROTEIN MJ1679 >gi|2129015|pir||E64509 hypothetical
           protein MJ1679 - Methanococcus jannaschii
           >gi|1500583|gb|AAB99704.1| (U67608) M. jannaschii
           predicted coding region MJ1679 [Methanococcus
           jannaschii]
           Length = 97
           
 Score = 71.8 bits (173), Expect = 2e-12
 Identities = 39/102 (38%), Positives = 70/102 (68%), Gaps = 13/102 (12%)

Query: 9   VEAPVSVRLPKYIIRKIDELVEKGEFKSRSDFIKYAVTLALGQIMM--EQARELARKITP 66
           +E  +++++PK I+ +IDEL+++G F SR +F++YAV  +L +I +  + +RE  +KI  
Sbjct: 2   IEEEITLKIPKSIVNQIDELIKEGYFSSRDEFVRYAVRESLTEIAISKKMSREECKKIW- 60

Query: 67  EEAQVRSKEALQKLLAAEIDEWPEEDIKELLEDIDKKWKKLK 108
           EE ++R K+        +ID   E++I+ELL+++DK+WKK K
Sbjct: 61  EEYKIRKKD-------IKID---EKEIEELLDEVDKEWKKWK 92


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.132    0.354 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34305842
Number of Sequences: 2977
Number of extensions: 1116430
Number of successful extensions: 7236
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7230
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 189,106,746
effective HSP length: 58
effective length of query: 54
effective length of database: 154,394,500
effective search space: 8337303000
effective search space used: 8337303000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)