BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2325 (PAB2325) DE:Hypothetical protein
         (146 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75189 hypothetical protein PAB2325 - Pyrococcus abyssi (st...   297  5e-80
pir||G71158 hypothetical protein PH0469 - Pyrococcus horikoshii ...   166  2e-40
pir||F64509 conserved hypothetical protein MJ1680 - Methanococcu...   107  8e-23
gi|11497911 conserved hypothetical protein [Archaeoglobus fulgid...    89  2e-17

>pir||C75189 hypothetical protein PAB2325 - Pyrococcus abyssi (strain Orsay)
           >gi|5457471|emb|CAB48962.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 146
           
 Score =  297 bits (752), Expect = 5e-80
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MKLVMDTNVVLAALIRPEGLGGLLISLLDKQHFTNYTSPEALEELQAKIALLAEEGKLNN 60
           MKLVMDTNVVLAALIRPEGLGGLLISLLDKQHFTNYTSPEALEELQAKIALLAEEGKLNN
Sbjct: 1   MKLVMDTNVVLAALIRPEGLGGLLISLLDKQHFTNYTSPEALEELQAKIALLAEEGKLNN 60

Query: 61  AWPRVLANFLYGTEIVEPREKFNICHDEDDNKWLDIAYAAKAYVILTWDKDLLSLRGLNK 120
           AWPRVLANFLYGTEIVEPREKFNICHDEDDNKWLDIAYAAKAYVILTWDKDLLSLRGLNK
Sbjct: 61  AWPRVLANFLYGTEIVEPREKFNICHDEDDNKWLDIAYAAKAYVILTWDKDLLSLRGLNK 120

Query: 121 TLRLKDHIVRILKPVEFIKEELRKEC 146
           TLRLKDHIVRILKPVEFIKEELRKEC
Sbjct: 121 TLRLKDHIVRILKPVEFIKEELRKEC 146


>pir||G71158 hypothetical protein PH0469 - Pyrococcus horikoshii
           >gi|3256873|dbj|BAA29556.1| (AP000002) 146aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 146
           
 Score =  166 bits (415), Expect = 2e-40
 Identities = 81/146 (55%), Positives = 101/146 (68%)

Query: 1   MKLVMDTNVVLAALIRPEGLGGLLISLLDKQHFTNYTSPEALEELQAKIALLAEEGKLNN 60
           M++VMDTNVVLA L+ P GL  LLI  LD +   NYTS E LEEL  KI LLAEEGKL++
Sbjct: 1   MRIVMDTNVVLAGLVNPNGLAALLILALDGEVLENYTSDEGLEELILKIGLLAEEGKLSS 60

Query: 61  AWPRVLANFLYGTEIVEPREKFNICHDEDDNKWLDIAYAAKAYVILTWDKDLLSLRGLNK 120
            W +VL++F+  +++V P  KFN+  D DDNKWL+IAY  KA  ILTWD+DLL LR  N+
Sbjct: 61  EWKKVLSHFVANSKVVSPSRKFNLSRDPDDNKWLEIAYEVKAACILTWDQDLLDLRDENR 120

Query: 121 TLRLKDHIVRILKPVEFIKEELRKEC 146
            LRL DH V +L P EF    ++  C
Sbjct: 121 VLRLDDHSVEVLTPSEFYHSVIKALC 146


>pir||F64509 conserved hypothetical protein MJ1680 - Methanococcus jannaschii
           >gi|1592247|gb|AAB99701.1| (U67608) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 155
           
 Score =  107 bits (264), Expect = 8e-23
 Identities = 57/142 (40%), Positives = 91/142 (63%), Gaps = 3/142 (2%)

Query: 1   MKLVMDTNVVLAALIRPEGLGGLLISLLDKQHFTNYTSPEALEELQAKI--ALLAEEGKL 58
           +K+V+DTNV ++ALI P G+ G ++ L+ ++   NYTSP  L+E+  K     L +    
Sbjct: 9   IKVVIDTNVFISALINPNGIPGKILDLIFEEKIVNYTSPSILKEIGFKCLSPKLRKYLGN 68

Query: 59  NNAWPRVLANFLYGTEIVEPREKFNICHDEDDNKWLDIAYAAKAYVILTWDKDLLSLRGL 118
            N   ++L  F   + I+ P   FN+C DEDDNK++++AY +KA +I+T DKDL+SLR  
Sbjct: 69  ENRILKILTAFSSVSVIINPNTNFNVCRDEDDNKFINVAYESKA-IIITGDKDLISLRDE 127

Query: 119 NKTLRLKDHIVRILKPVEFIKE 140
           NK L++ +  +++  P EFI+E
Sbjct: 128 NKYLKINNIHLKVPTPKEFIEE 149


>gi|11497911 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429989|pir||H69286 conserved hypothetical protein
           AF0296 - Archaeoglobus fulgidus
           >gi|2650335|gb|AAB90932.1| (AE001084) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 157
           
 Score = 89.3 bits (218), Expect = 2e-17
 Identities = 57/143 (39%), Positives = 81/143 (55%), Gaps = 10/143 (6%)

Query: 2   KLVMDTNVVLAALIRPEGLGGLLISLLDKQHFTNYTSPEALEELQAKIALLAEEGKLNNA 61
           K+V+DT+V+ AALI  +G    LIS L      N+ S E L+E    +       KL   
Sbjct: 3   KVVIDTSVIAAALISKKGGSYKLISHLIDNKLENHVSREILDEYFRVLIT-----KLTEF 57

Query: 62  WP-RVLANFLYGTE----IVEPREKFNICHDEDDNKWLDIAYAAKAYVILTWDKDLLSLR 116
           +P  VL  F    E     + P E+F+IC D++DNK+L+  YA+KA  ++T D DLL LR
Sbjct: 58  FPVEVLLEFYVLLESKSKTINPNEQFDICRDKEDNKFLNTVYASKANFLITLDNDLLDLR 117

Query: 117 GLNKTLRLKDHIVRILKPVEFIK 139
             N   ++K+H  +ILKP EF+K
Sbjct: 118 DENWEYQIKEHKFKILKPEEFLK 140


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53913812
Number of Sequences: 2977
Number of extensions: 2062337
Number of successful extensions: 4341
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4335
Number of HSP's gapped (non-prelim): 4
length of query: 146
length of database: 189,106,746
effective HSP length: 52
effective length of query: 94
effective length of database: 157,985,422
effective search space: 14850629668
effective search space used: 14850629668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)