BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2327 (PAB2327) DE:Hypothetical protein
         (197 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75188 hypothetical protein PAB2327 - Pyrococcus abyssi (st...   389  e-107
sp|Q58164|Y754_METJA HYPOTHETICAL PROTEIN MJ0754 >gi|2128477|pir...   187  1e-46

>pir||H75188 hypothetical protein PAB2327 - Pyrococcus abyssi (strain Orsay)
           >gi|5457468|emb|CAB48959.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 197
           
 Score =  389 bits (989), Expect = e-107
 Identities = 197/197 (100%), Positives = 197/197 (100%)

Query: 1   MRKKLIGFGLLALGIFSLVLQGVAAYRGTPGPSPVALAQVSYYAPLSDEEANSLLYMIEE 60
           MRKKLIGFGLLALGIFSLVLQGVAAYRGTPGPSPVALAQVSYYAPLSDEEANSLLYMIEE
Sbjct: 1   MRKKLIGFGLLALGIFSLVLQGVAAYRGTPGPSPVALAQVSYYAPLSDEEANSLLYMIEE 60

Query: 61  EKLARDVYLKLYNETGLIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDTLNEIGVFENEEL 120
           EKLARDVYLKLYNETGLIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDTLNEIGVFENEEL
Sbjct: 61  EKLARDVYLKLYNETGLIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDTLNEIGVFENEEL 120

Query: 121 QNLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHL 180
           QNLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHL
Sbjct: 121 QNLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHL 180

Query: 181 RAFTKVLADNYGIEYTP 197
           RAFTKVLADNYGIEYTP
Sbjct: 181 RAFTKVLADNYGIEYTP 197


>sp|Q58164|Y754_METJA HYPOTHETICAL PROTEIN MJ0754 >gi|2128477|pir||B64394 hypothetical
           protein MJ0754 - Methanococcus jannaschii
           >gi|1591467|gb|AAB98756.1| (U67521) M. jannaschii
           predicted coding region MJ0754 [Methanococcus
           jannaschii]
           Length = 185
           
 Score =  187 bits (469), Expect = 1e-46
 Identities = 93/153 (60%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 45  PLSDEEANSLLYMIEEEKLARDVYLKLYNETGLIIFDRIAQSEQRHMDAVLMLIEKYNLT 104
           P+S+EE   L+ M EEEKLARDVYL LYN+  L IF  IA+SEQ HMDAV  L+EKYN+ 
Sbjct: 12  PISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQIFKNIAESEQTHMDAVKYLLEKYNIP 71

Query: 105 APDTLNEIGVFENEELQNLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNED 164
            P   + IGVF N + + LY +LVE G +S VDALKVGA IE++DI DLE+W++K DNED
Sbjct: 72  DPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNED 131

Query: 165 IKVVFENLMDGSKNHLRAFTKVLADNYGIEYTP 197
           IK V+ENLM GS+NH+RAF ++L +NYG  YTP
Sbjct: 132 IKFVYENLMKGSRNHMRAFVRML-NNYGSNYTP 163


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.376 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70290441
Number of Sequences: 2977
Number of extensions: 2805901
Number of successful extensions: 11214
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11212
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 189,106,746
effective HSP length: 58
effective length of query: 139
effective length of database: 154,394,500
effective search space: 21460835500
effective search space used: 21460835500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)