BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2328 (PAB2328) DE:Hypothetical protein
         (101 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75188 hypothetical protein PAB2328 - Pyrococcus abyssi (st...   201  2e-51
sp|Q57682|Y229_METJA HYPOTHETICAL PROTEIN MJ0229 >gi|2128187|pir...    97  5e-20

>pir||G75188 hypothetical protein PAB2328 - Pyrococcus abyssi (strain Orsay)
           >gi|5457467|emb|CAB48958.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 101
           
 Score =  201 bits (506), Expect = 2e-51
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MVTMVQSIDELVKIGEALGNPVRVKILKMLCEKEWYVYELAKELGISRQLLYLHLKKLEK 60
           MVTMVQSIDELVKIGEALGNPVRVKILKMLCEKEWYVYELAKELGISRQLLYLHLKKLEK
Sbjct: 1   MVTMVQSIDELVKIGEALGNPVRVKILKMLCEKEWYVYELAKELGISRQLLYLHLKKLEK 60

Query: 61  AGLVESELRLEPGDPRAKKYYKAKQFKIVITNETLKNLKEV 101
           AGLVESELRLEPGDPRAKKYYKAKQFKIVITNETLKNLKEV
Sbjct: 61  AGLVESELRLEPGDPRAKKYYKAKQFKIVITNETLKNLKEV 101


>sp|Q57682|Y229_METJA HYPOTHETICAL PROTEIN MJ0229 >gi|2128187|pir||F64328 hypothetical
           protein MJ0229 - Methanococcus jannaschii
           >gi|1499006|gb|AAB98214.1| (U67478) arsenical resistance
           operon repressor [Methanococcus jannaschii]
           Length = 95
           
 Score = 96.7 bits (237), Expect = 5e-20
 Identities = 52/91 (57%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 10  ELVKIGEALGNPVRVKILKMLCEKEWYVYELAKELGISRQLLYLHLKKLEKAGLVESELR 69
           ++VK+GEAL NP+RVKIL +L ++   +YELAKEL +SR ++Y HL+KLE A LVES+L 
Sbjct: 5   DVVKMGEALSNPIRVKILYILNKQPKNIYELAKELELSRPVVYAHLRKLEDADLVESDLV 64

Query: 70  LEPGDPRAKKYYKAKQFKIVITNETLKNLKE 100
           LE    RAK+ YKAK+FK  I NE +K L E
Sbjct: 65  LE--GSRAKRIYKAKEFKFYIDNEIIKKLFE 93


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.375 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34558695
Number of Sequences: 2977
Number of extensions: 1204263
Number of successful extensions: 4094
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4091
Number of HSP's gapped (non-prelim): 2
length of query: 101
length of database: 189,106,746
effective HSP length: 55
effective length of query: 46
effective length of database: 156,189,961
effective search space: 7184738206
effective search space used: 7184738206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)