BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2333 (PAB2333) DE:putative TREHALOSE/MALTOSE BINDING PROTEIN
ou SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC
(426 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75187 probable trehalose/maltose binding protein or spermi... 875 0.0
pir||F71220 hypothetical protein PH0025 - Pyrococcus horikoshii ... 784 0.0
pir||B72543 hypothetical protein APE1630 - Aeropyrum pernix (str... 512 e-144
pir||D72279 conserved hypothetical protein - Thermotoga maritima... 492 e-138
>pir||G75187 probable trehalose/maltose binding protein or spermidine/
putrescine-binding periplasmic PAB2333 - Pyrococcus
abyssi (strain Orsay) >gi|5457459|emb|CAB48950.1|
(AJ248283) putative TREHALOSE/MALTOSE BINDING PROTEIN or
SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC [Pyrococcus
abyssi]
Length = 426
Score = 875 bits (2235), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MDRYLKVIATILLGLVVVASGCIGGGEVTKVVWASTQFTPPQERAFVLDELIPGFKEEVK 60
MDRYLKVIATILLGLVVVASGCIGGGEVTKVVWASTQFTPPQERAFVLDELIPGFKEEVK
Sbjct: 1 MDRYLKVIATILLGLVVVASGCIGGGEVTKVVWASTQFTPPQERAFVLDELIPGFKEEVK 60
Query: 61 IDVEFIPLDYPDLATRLEAEESSGKVTIDVIADLHGGLDYFNAKGWLEDLSGKKLEGRTF 120
IDVEFIPLDYPDLATRLEAEESSGKVTIDVIADLHGGLDYFNAKGWLEDLSGKKLEGRTF
Sbjct: 61 IDVEFIPLDYPDLATRLEAEESSGKVTIDVIADLHGGLDYFNAKGWLEDLSGKKLEGRTF 120
Query: 121 IESYMKYATDKNGKLFYIPWMSATYVMVVNKEAFKYLPSGLTEQDVIQGTEKWTYDALLA 180
IESYMKYATDKNGKLFYIPWMSATYVMVVNKEAFKYLPSGLTEQDVIQGTEKWTYDALLA
Sbjct: 121 IESYMKYATDKNGKLFYIPWMSATYVMVVNKEAFKYLPSGLTEQDVIQGTEKWTYDALLA 180
Query: 181 WVKNIYERTGKKAFGLPAGPKGLLHRFIHGYLYPSFTGYEAKKFDSSEAIEMWNYFKELW 240
WVKNIYERTGKKAFGLPAGPKGLLHRFIHGYLYPSFTGYEAKKFDSSEAIEMWNYFKELW
Sbjct: 181 WVKNIYERTGKKAFGLPAGPKGLLHRFIHGYLYPSFTGYEAKKFDSSEAIEMWNYFKELW 240
Query: 241 KYTNPASTTWDTMADPLLQGEVLIAWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVV 300
KYTNPASTTWDTMADPLLQGEVLIAWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVV
Sbjct: 241 KYTNPASTTWDTMADPLLQGEVLIAWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVV 300
Query: 301 LAGLAIPKNAPHPEEAWKLIDYLTRPETQVKVLKEVGFFPTVKEAVNAVPEGPLKILVKG 360
LAGLAIPKNAPHPEEAWKLIDYLTRPETQVKVLKEVGFFPTVKEAVNAVPEGPLKILVKG
Sbjct: 301 LAGLAIPKNAPHPEEAWKLIDYLTRPETQVKVLKEVGFFPTVKEAVNAVPEGPLKILVKG 360
Query: 361 VTAQSSTRDALIVMIPNLGAKGGEFSGIYREAFKRIVLKGEDPQKVLSELGPKLHQLFKE 420
VTAQSSTRDALIVMIPNLGAKGGEFSGIYREAFKRIVLKGEDPQKVLSELGPKLHQLFKE
Sbjct: 361 VTAQSSTRDALIVMIPNLGAKGGEFSGIYREAFKRIVLKGEDPQKVLSELGPKLHQLFKE 420
Query: 421 QGVEEP 426
QGVEEP
Sbjct: 421 QGVEEP 426
>pir||F71220 hypothetical protein PH0025 - Pyrococcus horikoshii
>gi|3256410|dbj|BAA29093.1| (AP000001) 426aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 426
Score = 784 bits (2003), Expect = 0.0
Identities = 368/422 (87%), Positives = 401/422 (94%)
Query: 5 LKVIATILLGLVVVASGCIGGGEVTKVVWASTQFTPPQERAFVLDELIPGFKEEVKIDVE 64
LKV+ L+G+ VV SGCIGGG K+VWASTQ PP+ERAFVL+ELIPGFKE+ IDVE
Sbjct: 5 LKVLIAALIGMAVVVSGCIGGGGPAKIVWASTQLNPPEERAFVLNELIPGFKEKTGIDVE 64
Query: 65 FIPLDYPDLATRLEAEESSGKVTIDVIADLHGGLDYFNAKGWLEDLSGKKLEGRTFIESY 124
F+P+ Y DLATR+E E SGKVTIDV+ADLHGGLDYFNAKGWL+DLSGKKLEGRTFIESY
Sbjct: 65 FVPISYSDLATRMEGEMQSGKVTIDVVADLHGGLDYFNAKGWLQDLSGKKLEGRTFIESY 124
Query: 125 MKYATDKNGKLFYIPWMSATYVMVVNKEAFKYLPSGLTEQDVIQGTEKWTYDALLAWVKN 184
MKYATDKNGK+FYIPWMSATYVMVVNKEAFKYLPSGLTE+DVI+GT+KWTYDALLAWVKN
Sbjct: 125 MKYATDKNGKVFYIPWMSATYVMVVNKEAFKYLPSGLTEEDVIKGTDKWTYDALLAWVKN 184
Query: 185 IYERTGKKAFGLPAGPKGLLHRFIHGYLYPSFTGYEAKKFDSSEAIEMWNYFKELWKYTN 244
IYE+TGKKAFGLPAGPKGLLHRFIHGYLYPSFTGYEAKKF+S EA+EMWNYFKELWKYTN
Sbjct: 185 IYEQTGKKAFGLPAGPKGLLHRFIHGYLYPSFTGYEAKKFESPEAVEMWNYFKELWKYTN 244
Query: 245 PASTTWDTMADPLLQGEVLIAWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVVLAGL 304
PASTTWD MADPLLQGEVLIAWDHTARI++AI TKP++FVVVPVPRGPKGRGFIVVLAGL
Sbjct: 245 PASTTWDAMADPLLQGEVLIAWDHTARIKNAITTKPDQFVVVPVPRGPKGRGFIVVLAGL 304
Query: 305 AIPKNAPHPEEAWKLIDYLTRPETQVKVLKEVGFFPTVKEAVNAVPEGPLKILVKGVTAQ 364
AIPKNAPHP+EAWKLIDYLT+PETQVKVL++VGFFPTVKEA NAVPEGPLKILVKGVTAQ
Sbjct: 305 AIPKNAPHPDEAWKLIDYLTKPETQVKVLEKVGFFPTVKEAENAVPEGPLKILVKGVTAQ 364
Query: 365 SSTRDALIVMIPNLGAKGGEFSGIYREAFKRIVLKGEDPQKVLSELGPKLHQLFKEQGVE 424
SST+DALIVMIPNLGAKGGEFSGIYR+AFKRI+L+GEDP+KVL+ELGPKLHQLFKEQGVE
Sbjct: 365 SSTKDALIVMIPNLGAKGGEFSGIYRDAFKRIILQGEDPEKVLNELGPKLHQLFKEQGVE 424
Query: 425 EP 426
EP
Sbjct: 425 EP 426
>pir||B72543 hypothetical protein APE1630 - Aeropyrum pernix (strain K1)
>gi|5105318|dbj|BAA80631.1| (AP000062) 478aa long
hypothetical protein [Aeropyrum pernix]
Length = 478
Score = 512 bits (1305), Expect = e-144
Identities = 249/402 (61%), Positives = 301/402 (73%), Gaps = 3/402 (0%)
Query: 26 GEVTKVVWASTQFTPPQERAFVLDELIPGFKEEVKIDVEFIPLDYPDLATRLEAEESSGK 85
GEVT ++WASTQ PP E+ FV +EL+P F +E I VEFI + Y DL RL++E SGK
Sbjct: 75 GEVT-LIWASTQLVPPTEQQFVKEELLPPFTQETGIKVEFIGMSYGDLNVRLQSEMESGK 133
Query: 86 VTIDVIADLHGGLDYFNAKGWLEDLSG-KKLEGRTFIESYMKYATDKNGKLFYIPWMSAT 144
VTI +IADLHGGLD + +KGWLEDLS LEGR F + Y+ G Y+PW++AT
Sbjct: 134 VTISLIADLHGGLDLYASKGWLEDLSKFGALEGREFPQVLEDYSR-LYGIKAYVPWLTAT 192
Query: 145 YVMVVNKEAFKYLPSGLTEQDVIQGTEKWTYDALLAWVKNIYERTGKKAFGLPAGPKGLL 204
YV VVNKEAFKYLP GL+E+DVI G+EKWTYDALL W KNI TG+K G PAGPKGL
Sbjct: 193 YVFVVNKEAFKYLPPGLSEEDVITGSEKWTYDALLEWAKNIEAATGQKPLGFPAGPKGLF 252
Query: 205 HRFIHGYLYPSFTGYEAKKFDSSEAIEMWNYFKELWKYTNPASTTWDTMADPLLQGEVLI 264
HRF+HGYLYPSFTG + K FDS EA++MW+Y KELW Y +P ST ++ MA PLL GEVLI
Sbjct: 253 HRFLHGYLYPSFTGAQVKNFDSPEAVQMWSYLKELWNYVHPQSTVYEAMAAPLLNGEVLI 312
Query: 265 AWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVVLAGLAIPKNAPHPEEAWKLIDYLT 324
AWDHTARI+DAI KP+EFVVVP P GPKGRG+I+V+ GLAIPKNAPH + AWKLI+YLT
Sbjct: 313 AWDHTARIKDAIVQKPDEFVVVPAPAGPKGRGYILVIVGLAIPKNAPHQDAAWKLIEYLT 372
Query: 325 RPETQVKVLKEVGFFPTVKEAVNAVPEGPLKILVKGVTAQSSTRDALIVMIPNLGAKGGE 384
RPE Q +L++VGFFP V +PEGPLK+L +GV Q +T D+L+ +IP+LG KGG+
Sbjct: 373 RPEVQSLILEKVGFFPAVSGVSEKLPEGPLKVLAQGVGNQLNTPDSLVALIPSLGEKGGD 432
Query: 385 FSGIYREAFKRIVLKGEDPQKVLSELGPKLHQLFKEQGVEEP 426
F YREAFK IVL+G+DPQ+VL EL L LF+ G P
Sbjct: 433 FRNTYREAFKAIVLEGKDPQQVLPELKQYLLSLFQATGASLP 474
>pir||D72279 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981789|gb|AAD36310.1|AE001779_12 (AE001779)
conserved hypothetical protein [Thermotoga maritima]
Length = 413
Score = 492 bits (1253), Expect = e-138
Identities = 246/412 (59%), Positives = 309/412 (74%), Gaps = 8/412 (1%)
Query: 15 LVVVASGCIGGGEVTKVVWASTQFTPPQERAFVLDELIPGFKEEVKIDVEFIPLDYPDLA 74
L++VA G KV +ASTQ TP ER F+L++L F ++ IDVEF+ +YP L
Sbjct: 3 LLIVAGLMFG-----KVNFASTQMTPAAEREFMLNKLAE-FSKKSGIDVEFLNFEYPQLY 56
Query: 75 TRLEAEESSGKVTIDVIADLHGGLDYFNAKGWLEDLSGKKLEGRTFIESYMKYATDKNGK 134
+RL+AE +GK T+++IADL G L ++G+L DL K EG+TFIE+ K+A K K
Sbjct: 57 SRLQAEIRAGKNTLNLIADLQGNLYIMASEGFLSDLKDLKFEGKTFIETLEKFAYVKGEK 116
Query: 135 LFYIPWMSATYVMVVNKEAFKYLPSGLTEQDVIQGTEKWTYDALLAWVKNIYERTGKKAF 194
+F IPW+ ATYVM VNK+AF YLP GL+++DVI+GTEKWTYDALL W KNIYE+T +
Sbjct: 117 VF-IPWLQATYVMAVNKKAFDYLPRGLSKEDVIRGTEKWTYDALLEWAKNIYEKTKQPLL 175
Query: 195 GLPAGPKGLLHRFIHGYLYPSFTGYEAKKFDSSEAIEMWNYFKELWKYTNPASTTWDTMA 254
G P GPKGL HRF+HGY+YPSFTG +A KFDS A+EMWNY KEL+KY +PAS+TWD MA
Sbjct: 176 GFPIGPKGLWHRFLHGYIYPSFTGAQALKFDSVRAVEMWNYLKELFKYVHPASSTWDGMA 235
Query: 255 DPLLQGEVLIAWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVVLAGLAIPKNAPHPE 314
DPLL+ EV IAWDHTAR++ AI KP +FVVVPVPRGP GRG+I+VL GLAIPK+A E
Sbjct: 236 DPLLREEVWIAWDHTARLKPAIVEKPNDFVVVPVPRGPMGRGYIIVLVGLAIPKDADFEE 295
Query: 315 EAWKLIDYLTRPETQVKVLKEVGFFPTVKEAVNAVPEGPLKILVKGVTAQSSTRDALIVM 374
A K+ID+LT PE QV++LK VGFFP V+EAV AVPEG LK+L +GV QS+T+D+++
Sbjct: 296 PA-KVIDFLTSPEMQVEILKNVGFFPVVQEAVGAVPEGALKVLAEGVINQSATKDSIVSF 354
Query: 375 IPNLGAKGGEFSGIYREAFKRIVLKGEDPQKVLSELGPKLHQLFKEQGVEEP 426
IP+LG K GEF+ YR AF RIV +GEDP KV+ ELG ++ QLFKE G E P
Sbjct: 355 IPSLGPKSGEFTETYRMAFTRIVFQGEDPAKVVKELGERIRQLFKESGAELP 406
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172223412
Number of Sequences: 2977
Number of extensions: 7831312
Number of successful extensions: 18283
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18275
Number of HSP's gapped (non-prelim): 4
length of query: 426
length of database: 189,106,746
effective HSP length: 54
effective length of query: 372
effective length of database: 156,788,448
effective search space: 58325302656
effective search space used: 58325302656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)