BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2335 (malG-like) DE:SUGAR ABC TRANSPORTER, PERMEASE PROTEIN
(277 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75187 sugar abc transporter, permease protein PAB2335 - Py... 542 e-153
pir||D71220 probable sugar transport membrane protein - Pyrococc... 509 e-143
pir||B72279 hypothetical protein TM1233 - Thermotoga maritima (s... 299 3e-80
pir||E72543 probable ABC transporter permease protein APE1633 - ... 289 2e-77
emb|CAB59590.1| (AL132662) putative sugar transporter inner memb... 127 2e-28
pir||E72395 sugar ABC transporter, permease protein - Thermotoga... 124 1e-27
pir||C71369 probable sugar ABC transporter, permease protein (y4... 120 2e-26
emb|CAB94619.1| (AL359214) putative sugar transporter integral m... 120 2e-26
sp|Q53683|YOE1_STRAT HYPOTHETICAL PROTEIN IN OLED 5'REGION (ORF1... 116 4e-25
pir||T45203 probable transport protein malg [imported] - Mycobac... 115 8e-25
pir||D70952 probable sugar - Mycobacterium tuberculosis (strain ... 114 1e-24
emb|CAB90877.1| (AL355752) putative maltose permease [Streptomyc... 113 2e-24
pir||T47063 hypothetical protein [imported] - Yersinia pestis >g... 111 9e-24
gb|AAG09708.1|AF218837_3 (AF218837) unknown [Pasteurella multocida] 111 1e-23
sp|P77716|YCJP_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 111 1e-23
gb|AAD51829.1|AF175299_4 (AF175299) ThuG [Sinorhizobium meliloti] 109 4e-23
pir||T36900 probable integral membrane transport protein - Strep... 108 6e-23
pir||T35791 probable transmembrane sugar transport protein - Str... 106 2e-22
gb|AAK41272.1| Sugar ABC transporter [Sulfolobus solfataricus] 106 2e-22
pir||F83194 polyamine transport protein PotC PA3609 [imported] -... 106 3e-22
sp|O32154|YURM_BACSU HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 106 4e-22
pir||S75972 hypothetical protein - Synechocystis sp. (strain PCC... 105 5e-22
sp|P55603|Y4OR_RHISN PROBABLE ABC TRANSPORTER PERMEASE PROTEIN Y... 105 5e-22
dbj|BAB06643.1| (AP001517) maltose/maltodextrin transport system... 104 1e-21
emb|CAB87330.1| (AL163672) putative integral membrane transport ... 104 1e-21
pir||D72378 sugar ABC transporter, permease protein - Thermotoga... 104 1e-21
gb|AAC44395.1| (U43526) ORF-4 [Streptococcus pneumoniae] 103 2e-21
sp|O58760|YJ16_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 103 3e-21
sp|Q9Z3R7|AGLG_RHIME ALPHA-GLUCOSIDES TRANSPORT SYSTEM PERMEASE ... 103 3e-21
pir||F75395 ABC transporter, permease protein, MalFG family - De... 103 3e-21
dbj|BAB04622.1| (AP001510) L-arabinose transport system (permeas... 101 8e-21
pir||H75206 maltose transport system permease protein malg PAB01... 101 8e-21
pir||T08161 MalG homolog - Pyrococcus furiosus (fragment) >gi|24... 100 2e-20
pir||S63616 malG protein homolog cymG - Klebsiella oxytoca >gi|8... 100 2e-20
pir||T35672 probable transmembrane transport protein - Streptomy... 100 2e-20
emb|CAA68974.1| (Y07706) putative maltose permease [Streptomyces... 100 3e-20
emb|CAB72190.1| (AL138851) putative sugar transporter inner memb... 99 7e-20
emb|CAB86097.1| (AL163003) putative sugar transporter inner memb... 99 7e-20
dbj|BAB07407.1| (AP001519) sugar transport system (permease) [Ba... 99 7e-20
sp|P23859|POTC_ECOLI SPERMIDINE/PUTRESCINE TRANSPORT SYSTEM PERM... 98 9e-20
emb|CAB61806.1| (AL133236) putative sugar-permease [Streptomyces... 98 9e-20
emb|CAC11827.1| (AL445065) probable sugar ABC transporter, perme... 98 9e-20
emb|CAB72404.1| (AL138978) putative integral membrane transport ... 98 1e-19
pir||D82201 spermidine/putrescine ABC transporter, permease prot... 97 3e-19
pir||T46752 inner membrane protein malG [validated] - Thermococc... 96 4e-19
gi|11499198 spermidine/putrescine ABC transporter, permease prot... 96 5e-19
pir||T03551 transmembrane maltose transport protein - Rhodobacte... 96 6e-19
gb|AAK41417.1| Sugar ABC transporter [Sulfolobus solfataricus] 95 1e-18
emb|CAA63862.1| (X94148) putative inner membrane protein [Bacill... 95 1e-18
emb|CAC11293.1| (AL445063) trehalose/maltose transporter, inner ... 95 1e-18
sp|P40980|YOR2_CALSR HYPOTHETICAL 30.9 KD PROTEIN IN XYLR 5'REGI... 94 1e-18
gb|AAC45768.1| (AF018073) sorbitol/mannitol transport inner memb... 94 1e-18
pir||T45007 probable ABC-transport protein [imported] - Halofera... 94 2e-18
gi|10955067 agtD [Agrobacterium tumefaciens] >gi|6689867|gb|AAF2... 94 2e-18
sp|O31520|YESQ_BACSU PROBABLE ABC TRANSPORTER PERMEASE PROTEIN Y... 93 3e-18
emb|CAC11275.1| (AL445063) inner membrane protein of trehalose/m... 93 3e-18
pir||S75051 lactose transport system permease protein lacG - Syn... 93 4e-18
dbj|BAB04965.1| (AP001511) unknown conserved protein [Bacillus h... 93 4e-18
gb|AAC04470.1| (AF007800) MtlG [Pseudomonas fluorescens] 92 5e-18
pir||D71123 probable sugar transport system permease protein - P... 92 5e-18
pir||A75504 maltose ABC transporter, permease protein - Deinococ... 92 9e-18
emb|CAB42552.1| (Y16753) sugar permease [Thermus thermophilus] 91 1e-17
dbj|BAB04838.1| (AP001511) lactose transport system (permease) [... 91 2e-17
sp|O58967|YC16_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 90 3e-17
gb|AAF70305.1|AF259975_1 (AF259975) MalG [Vibrio cholerae] 89 5e-17
sp|P45169|POTC_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT SYSTEM PERM... 89 6e-17
pir||F83248 probable permease of ABC sugar transporter PA3188 [i... 89 6e-17
emb|CAB59597.1| (AL132662) probable sugar transport inner membra... 88 1e-16
pir||F75203 anion transport system permease protein PAB0102 - Py... 88 1e-16
pir||H71236 probable transport system protein - Pyrococcus horik... 87 2e-16
pir||C82557 ABC transporter sugar permease XF2446 [imported] - X... 87 2e-16
dbj|BAB07566.1| (AP001520) ABC transporter (permease) [Bacillus ... 87 2e-16
gb|AAK42959.1| ABC transporter, permease (glucose) [Sulfolobus s... 87 3e-16
pir||F72379 sugar ABC transporter, permease protein - Thermotoga... 87 3e-16
pir||T36914 probable integral membrane sugar transport protein -... 87 3e-16
dbj|BAB06443.1| (AP001516) lactose transport system (permease) [... 87 3e-16
dbj|BAB07401.1| (AP001519) sugar ABC transporter (permease) [Bac... 87 3e-16
pir||C69588 L-arabinose transport (integral membrane protein) ar... 86 4e-16
pir||C72756 probable multiple sugar-binding transport system per... 86 4e-16
emb|CAB61862.1| (AL133252) putative ABC-transporter inner membra... 86 4e-16
pir||F82397 maltose ABC transporter, permease protein VCA0943 [i... 86 4e-16
pir||H83568 probable permease of ABC transporter PA0606 [importe... 86 5e-16
emb|CAB07809.1| (Z93773) permease [Thermus sp. T2] 85 7e-16
gb|AAC12802.1| (U67851) ChtK [Agrobacterium sp.] >gi|3153871|gb|... 85 7e-16
gb|AAC27497.1| (AF077856) PotC [Actinobacillus actinomycetemcomi... 85 7e-16
pir||A56641 probable membrane transport protein - Clostridium pe... 85 9e-16
pir||I64117 spermidine/putrescine transport system permease potC... 85 9e-16
sp|P37729|AMYC_THETU POTENTIAL STARCH DEGRADATION PRODUCTS TRANS... 85 1e-15
emb|CAA61936.1| (X89810) putative integral protein [Bacillus sub... 85 1e-15
emb|CAB61916.1| (AL133278) putative transport system permease pr... 84 2e-15
emb|CAB71198.1| (AL138538) putative sugar transport inner membra... 84 2e-15
pir||A83608 polyamine transport protein PotI PA0304 [imported] -... 84 2e-15
pir||G75412 spermidine/putrescine ABC transporter, permease prot... 83 3e-15
gb|AAG20920.1| (AE005158) sn-glycerol-3-phosphate transport syst... 83 3e-15
pir||E70693 probable ugpE protein - Mycobacterium tuberculosis (... 83 3e-15
gb|AAF43782.1|AF135015_1 (AF135015) putative integral membrane p... 83 3e-15
emb|CAB95277.1| (AL359779) putative sugar transport integral mem... 83 5e-15
emb|CAB65653.1| (AJ252161) putative maltose transport membrane p... 82 6e-15
gb|AAG20068.1| (AE005086) spermidine/putrescine ABC transporter ... 82 8e-15
emb|CAA91218.1| (Z56279) integral membrane protein [Thermoanaero... 82 1e-14
gi|10954680 probable mikimopine transporter gene~similar to potC... 82 1e-14
sp|P77505|YDCV_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 80 2e-14
pir||T30907 probable transport protein - Caldocellum saccharolyt... 80 2e-14
emb|CAC01654.1| (AL391072) putative sugar-binding integral membr... 80 2e-14
emb|CAB88163.1| (AL352956) putative binding-protein-dependent tr... 80 3e-14
pir||E83605 probable permease of ABC transporter PA0324 [importe... 80 3e-14
pir||G71296 probable spermidine/putrescine ABC transporter, perm... 80 4e-14
gi|10955062 motD [Agrobacterium tumefaciens] >gi|1381801|gb|AAC1... 79 5e-14
pir||F70943 hypothetical protein Rv2039c - Mycobacterium tubercu... 79 5e-14
sp|P26468|MALG_SALTY MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN M... 79 7e-14
pir||B71007 hypothetical protein PH1352 - Pyrococcus horikoshii ... 79 7e-14
gb|AAD33666.1|AF135398_3 (AF135398) putative integral membrane p... 79 7e-14
pir||T36640 probable ABC-type transport system membrane protein ... 79 7e-14
emb|CAC16437.1| (AL450165) putative sugar transport integral mem... 79 7e-14
gb|AAK43168.1| Arabinose ABC transporter, permease [Sulfolobus s... 78 9e-14
pir||G72357 sugar ABC transporter, permease protein - Thermotoga... 78 9e-14
pir||H72282 maltose ABC transporter, permease protein - Thermoto... 78 9e-14
pir||B83353 probable binding-protein-dependent maltose/mannitol ... 78 9e-14
sp|P07622|MALG_ECOLI MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN M... 78 1e-13
pir||T35800 probable polyamine ABC-transporter integral membrane... 78 1e-13
pir||H72450 probable maltose transport system permease protein A... 78 1e-13
pir||A70034 maltodextrin transport system permease homolog yvdI ... 78 2e-13
pir||T37131 probable integral membrane permease - Streptomyces c... 78 2e-13
emb|CAB55534.1| (AL117322) putative binding-protein-dependent tr... 78 2e-13
sp|P18814|MALG_ENTAE MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN M... 77 2e-13
dbj|BAB04797.1| (AP001510) glycerol-3-phosphate ABC transporter ... 77 2e-13
gb|AAC99627.1| (AF043654) BxlG [Streptomyces lividans] 77 3e-13
pir||B75208 transmembrane sugar transport protein PAB2231 - Pyro... 76 3e-13
pir||B71243 probable maltose transport system permease protein -... 76 4e-13
gb|AAB67296.1| (U59485) AttB [Agrobacterium tumefaciens] 76 6e-13
dbj|BAA28361.1| (D85027) integral membrane protein [Thermus sp. A4] 76 6e-13
emb|CAB11327.1| (Z98604) possible transport protein [Mycobacteri... 75 1e-12
emb|CAB70939.1| (AL137778) putative transport system inner membr... 75 1e-12
emb|CAC10106.1| (AL442165) putative cellobiose transport permeas... 75 1e-12
pir||G70179 spermidine/putrescine ABC transporter, permease prot... 75 1e-12
pir||E72331 hypothetical protein TM0812 - Thermotoga maritima (s... 75 1e-12
emb|CAA47163.1| (X66596) lacG [Agrobacterium radiobacter] 74 2e-12
sp|P29824|LACG_AGRRD LACTOSE TRANSPORT SYSTEM PERMEASE PROTEIN L... 74 2e-12
pir||C72261 spermidine/putrescine ABC transporter, permease prot... 74 2e-12
dbj|BAB05585.1| (AP001513) sugar transport system (permease) (bi... 74 2e-12
emb|CAB56685.1| (AL121596) putative binding-protein dependent tr... 73 3e-12
emb|CAA08866.1| (AJ009832) putative transmembrane sugar transpor... 73 4e-12
pir||F75124 abc transporter integral membrane protein PAB0543 - ... 72 7e-12
pir||E81179 spermidine/putrescine ABC transporter, permease prot... 72 7e-12
dbj|BAB05943.1| (AP001514) maltose transport system (permease) [... 72 7e-12
pir||H72205 maltose ABC transporter, permease protein - Thermoto... 72 9e-12
pir||A81927 probable polyamine permease inner membrane protein N... 72 9e-12
gb|AAB95373.1| (U75349) putative permease BitE [Brachyspira hyod... 71 1e-11
sp|P53561|YTCP_BACSU PROBABLE ABC TRANSPORTER PERMEASE PROTEIN I... 71 2e-11
pir||T36086 probable binding protein dependent transport protein... 70 3e-11
sp|Q00751|MSMG_STRMU MULTIPLE SUGAR-BINDING TRANSPORT SYSTEM PER... 70 3e-11
gb|AAB17464.1| (U51868) unknown [Bacillus subtilis] 70 3e-11
pir||G72292 glycerol-3-phosphate ABC transporter, permease prote... 70 3e-11
sp|P39129|LPLC_BACSU LPLC PROTEIN >gi|7442828|pir||B69653 transm... 69 8e-11
pir||F81344 probable ABC transport system permease Cj0731 [impor... 68 1e-10
>pir||E75187 sugar abc transporter, permease protein PAB2335 - Pyrococcus abyssi
(strain Orsay) >gi|5457457|emb|CAB48948.1| (AJ248283)
SUGAR ABC TRANSPORTER, PERMEASE PROTEIN [Pyrococcus
abyssi]
Length = 277
Score = 542 bits (1381), Expect = e-153
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK
Sbjct: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
Query: 61 TILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPI 120
TILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPI
Sbjct: 61 TILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPI 120
Query: 121 PVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT 180
PVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT
Sbjct: 121 PVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT 180
Query: 181 RWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGA 240
RWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGA
Sbjct: 181 RWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGA 240
Query: 241 APAYYKFAAAFIMILPAMLFIFFARRYLVTMWGITLR 277
APAYYKFAAAFIMILPAMLFIFFARRYLVTMWGITLR
Sbjct: 241 APAYYKFAAAFIMILPAMLFIFFARRYLVTMWGITLR 277
>pir||D71220 probable sugar transport membrane protein - Pyrococcus horikoshii
>gi|3256408|dbj|BAA29091.1| (AP000001) 277aa long
hypothetical sugar transport membrane protein
[Pyrococcus horikoshii]
Length = 277
Score = 509 bits (1296), Expect = e-143
Identities = 255/277 (92%), Positives = 265/277 (95%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
MNEKT FMLKK+AFYAFIFTVVAWI+IPIIVS LYAFSTK DYY+P KVIPTSFT +WVK
Sbjct: 1 MNEKTVFMLKKVAFYAFIFTVVAWIVIPIIVSALYAFSTKTDYYDPRKVIPTSFTDEWVK 60
Query: 61 TILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPI 120
TIL+ LGAW GIKNS+IVA LTIIISF+LGIPAGYAIAR+ FKGKDTIKLSIVALRMFPI
Sbjct: 61 TILYVLGAWDGIKNSVIVATLTIIISFILGIPAGYAIARFAFKGKDTIKLSIVALRMFPI 120
Query: 121 PVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT 180
PVMAIPLVVLYIKL LIDTL GVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT
Sbjct: 121 PVMAIPLVVLYIKLKLIDTLFGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT 180
Query: 181 RWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGA 240
RWGAF++ITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGA
Sbjct: 181 RWGAFRNITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGA 240
Query: 241 APAYYKFAAAFIMILPAMLFIFFARRYLVTMWGITLR 277
APAYYKFAAAFIM LPAMLFIFFARRYLVTMWGITLR
Sbjct: 241 APAYYKFAAAFIMTLPAMLFIFFARRYLVTMWGITLR 277
>pir||B72279 hypothetical protein TM1233 - Thermotoga maritima (strain MSB8)
>gi|4981787|gb|AAD36308.1|AE001779_10 (AE001779) sugar
ABC transporter, permease protein, putative [Thermotoga
maritima]
Length = 265
Score = 299 bits (757), Expect = 3e-80
Identities = 152/271 (56%), Positives = 200/271 (73%), Gaps = 7/271 (2%)
Query: 8 MLKKIAFYAFIFTVVA-WILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTL 66
M+KK F F+ +++ W L P+ L + + +DYYNP ++ P+S T + + + TL
Sbjct: 1 MMKKF-FIIFLSVIISLWFLTPVFFIVLASLTPSSDYYNPSRIFPSSLTLEHLYKLFVTL 59
Query: 67 GAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIP 126
G S+ VA+++I ISFLLG+PAGYA+ RYVF GK+ I+LS++ R P+ V+A+P
Sbjct: 60 GGGKATLVSVQVALISIGISFLLGLPAGYALTRYVFPGKNIIRLSMLMTRSIPLIVVAVP 119
Query: 127 LVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFK 186
LVVLY++ NL DT LGVALAH +M LPFVVLITSS+F+G+ E EEAGMVFGL+R+ AF
Sbjct: 120 LVVLYMRFNLADTTLGVALAHASMILPFVVLITSSVFSGISVEYEEAGMVFGLSRFQAFI 179
Query: 187 SITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYK 246
ITLPLALPGLAA+A+F F+MSWNEVF +SILTL NRTLPA IL+ A+P Y+K
Sbjct: 180 RITLPLALPGLAASAIFAFIMSWNEVFASSILTLTNRTLPAHILNTAM-----ASPDYFK 234
Query: 247 FAAAFIMILPAMLFIFFARRYLVTMWGITLR 277
FAA IM +PAM+FIFF R+YLV+MWGITL+
Sbjct: 235 FAAGTIMAVPAMVFIFFIRKYLVSMWGITLK 265
>pir||E72543 probable ABC transporter permease protein APE1633 - Aeropyrum
pernix (strain K1) >gi|5105321|dbj|BAA80634.1|
(AP000062) 270aa long hypothetical ABC transporter
permease protein [Aeropyrum pernix]
Length = 270
Score = 289 bits (732), Expect = 2e-77
Identities = 149/267 (55%), Positives = 197/267 (72%), Gaps = 6/267 (2%)
Query: 11 KIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWS 70
++A YAF+ +V+WIL+P+ +S +YAF T D Y + ++ TSFT VKT L+ LGA
Sbjct: 10 ELARYAFLAVLVSWILVPLAISIVYAF-TPLDVYYSNAILTTSFTLDHVKT-LWILGAGE 67
Query: 71 GIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVL 130
S+ V +T+ ISFLLG+P GYA+ARYVF G+D +KL+I+A RMFPI V+++ L+
Sbjct: 68 AFLRSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKT 127
Query: 131 YIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITL 190
+ L L DTL+G+ALAHTAMALPFVV+IT SIF G+ ++LEEAGM+FGL+ F ITL
Sbjct: 128 FFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITL 187
Query: 191 PLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAA 250
PLA PGL AA MFTF++SWNEVF+AS+LTL NRTLPA IL+ +A +FAAA
Sbjct: 188 PLAAPGLTAAGMFTFLLSWNEVFMASVLTLVNRTLPAFILN----SAFATPIEPIRFAAA 243
Query: 251 FIMILPAMLFIFFARRYLVTMWGITLR 277
F++ILPA++F+F ARRYLVTMW + R
Sbjct: 244 FMLILPALVFMFLARRYLVTMWAMAAR 270
>emb|CAB59590.1| (AL132662) putative sugar transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 285
Score = 127 bits (315), Expect = 2e-28
Identities = 79/267 (29%), Positives = 141/267 (52%), Gaps = 13/267 (4%)
Query: 9 LKKIAFYAFIFTVVAWILIPI--IVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTL 66
L+++ A V L P+ +V+T + ST Y+P +++P ++T + + +
Sbjct: 14 LRRLPLNAAAALTVVVCLFPVYWMVTTAFKPSTDIQSYDP-RLVPGAWTLEHFRKAVGAD 72
Query: 67 GAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIP 126
G +NS++V + ++++ L+ + A YA+AR ++G+ L++ +M P + IP
Sbjct: 73 GFALFWRNSLLVTLSAVLLALLVALGAAYAVARMRWRGRRQFMLAVFVAQMAPWESLIIP 132
Query: 127 LVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFK 186
+ ++ ++D L + L + + LPF V++ AG+ ELEEA V G TR GAF+
Sbjct: 133 IYIISRDTGMLDRLPTLTLIYFMITLPFTVVVLRGFIAGIPPELEEAAQVDGCTRAGAFR 192
Query: 187 SITLPLALPGLAAAAMFTFVMSWNEVFVASILTLK---NRTLPAQILSIVA--GAAGGAA 241
+ PL PGL A ++F F+ +WNE A+ L +K +RTLP + S + G GA
Sbjct: 193 RVAFPLLAPGLMATSLFGFITAWNEFTYANFLIIKQQDSRTLPVWLSSFQSTFGTDWGAT 252
Query: 242 PAYYKFAAAFIMILPAMLFIFFARRYL 268
AAA + LPA++ +R++
Sbjct: 253 -----MAAATLFALPALVIFLALQRHV 274
>pir||E72395 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980777|gb|AAD35367.1|AE001710_2
(AE001710) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 281
Score = 124 bits (309), Expect = 1e-27
Identities = 88/278 (31%), Positives = 141/278 (50%), Gaps = 20/278 (7%)
Query: 8 MLKKIAF---YAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTS------FTSQ 57
M+KKI Y I + + L P+ + AF +++ P + PT F ++
Sbjct: 1 MMKKILTIVRYILIAICLIFFLFPVYWLVITAFKPSDEWFTMPPRFFPTKPTLANFFGAK 60
Query: 58 WVKTILFTLGAWSGI----KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIV 113
+ T G+ I +NSI+V V +I ++ A YAIARY G + I+
Sbjct: 61 ETEVFGGTTGSIENIFPYLRNSIVVGVSVALIGTVISALAAYAIARYRVGGPFLAEW-II 119
Query: 114 ALRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEA 173
++RM P V A+PL V++ KL LI+T + L+H + +P V + S F + +E++EA
Sbjct: 120 SIRMLPPIVSAVPLYVIFTKLRLINTWWALILSHLVIVVPLGVWLLISFFREIPREIDEA 179
Query: 174 GMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILT--LKNRTLPAQILS 231
V G T + AF + LPL+ PGLAA A+ + + SW E +A +LT + +TLP +
Sbjct: 180 AYVDGATPFQAFFYVVLPLSAPGLAAVAVLSLIQSWGEFLLALVLTNDARAQTLPIFLGR 239
Query: 232 IVAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
+ G P AA + +LP ++F A+RYL+
Sbjct: 240 YITGWRVAWGPL---SAAGIVTMLPVVVFALVAQRYLI 274
>pir||C71369 probable sugar ABC transporter, permease protein (y4oR) - syphilis
spirochete >gi|3322335|gb|AAC65071.1| (AE001192) sugar
ABC transporter, permease protein (y4oR) [Treponema
pallidum]
Length = 273
Score = 120 bits (298), Expect = 2e-26
Identities = 67/199 (33%), Positives = 113/199 (56%), Gaps = 8/199 (4%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS++V + + ++S G A YA+ R+ ++GK I ++++ LR+ P V+ IP+ V +
Sbjct: 73 NSLVVTLSSTVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPVVLVIPIFVWWTA 132
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L L+++L G+AL + A+ +PF V + ++ A + L+E+ + G + W F I +PL
Sbjct: 133 LGLVNSLAGLALVYGALNVPFNVWVITTFVAEIPPSLDESAKLDGCSHWMIFTRIVMPLI 192
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILSIV--AGAAGGAAPAYYKFAAA 250
P LA ++FTF +WNE + LT K RTLP + + +G G AAA
Sbjct: 193 TPALALVSIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLTDSGVEWGRIT-----AAA 247
Query: 251 FIMILPAMLFIFFARRYLV 269
++ +PA +F F A +YLV
Sbjct: 248 TLIAIPACVFTFAAAKYLV 266
>emb|CAB94619.1| (AL359214) putative sugar transporter integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 276
Score = 120 bits (298), Expect = 2e-26
Identities = 74/251 (29%), Positives = 129/251 (50%), Gaps = 10/251 (3%)
Query: 25 ILIPIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTI 83
++ P+ AF D + + V PT T + KT W+ + NS+IV V +
Sbjct: 22 LVFPVYWMFATAFKPTGDIISENPVWFPTDITFEHFKTATEADHFWTYVSNSLIVTVCAV 81
Query: 84 IISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGV 143
+ S ++ + +A+AR FKG+ + + +M P VM I + ++ +++++L+ +
Sbjct: 82 VFSLVIALAGSFALARMRFKGRRGFIVGFMLAQMAPWEVMVIAIYMIVRDASMLNSLVPL 141
Query: 144 ALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMF 203
L + M LPF +L A V KELEE+ MV G TR AF+ + LPL PGL + +MF
Sbjct: 142 TLFYMMMILPFTILTLRGFVAAVPKELEESAMVDGCTRAQAFRRVILPLLAPGLMSTSMF 201
Query: 204 TFVMSWNEVFVASILT--LKNRTLPAQILSI--VAGAAGGAAPAYYKFAAAFIMILPAML 259
F+ +WNE+ + ++ +++TLP + S V G GA AA+ + +P ++
Sbjct: 202 GFITAWNELPLVLVVNKEAESQTLPLWLTSFQTVFGDNWGAT-----MAASSLFAIPILI 256
Query: 260 FIFFARRYLVT 270
+ +R V+
Sbjct: 257 LFVYLQRKAVS 267
>sp|Q53683|YOE1_STRAT HYPOTHETICAL PROTEIN IN OLED 5'REGION (ORF1) >gi|421634|pir||S33182
probable transport protein - Streptomyces antibioticus
(fragment) >gi|296489|emb|CAA80299.1| (Z22577) membrane
protein [Streptomyces antibioticus]
Length = 229
Score = 116 bits (287), Expect = 4e-25
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 5/199 (2%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS++VA+ T ++ L+ P Y +AR+ K +V + FP ++ IPL ++ +
Sbjct: 25 NSLLVALATAAVTVLIATPMAYVMARHRTKAARAATGWVVVSQAFPFVLLIIPLFLVLKR 84
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L LID+L G+ L + +LPF + + + V ELEEA V G R S+T+PL
Sbjct: 85 LRLIDSLTGLVLVYVVWSLPFALWMLAGHARAVPAELEEAAAVDGAGRVRTLTSVTVPLL 144
Query: 194 LPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
PG+AA A+F FV +WNE F A +L + +TLP +L+ GA G P AAAF
Sbjct: 145 APGIAATALFAFVTAWNEFFFALVLLKSPHRQTLPV-VLTHFIGAEG--VPTSPAGAAAF 201
Query: 252 IMILPAMLFIFFARRYLVT 270
+ LP++ F +R + +
Sbjct: 202 LATLPSLAFFALVQRRITS 220
>pir||T45203 probable transport protein malg [imported] - Mycobacterium leprae
>gi|699148|gb|AAA62914.1| (U15180) maltose transport
inner membrane protein [Mycobacterium leprae]
Length = 296
Score = 115 bits (284), Expect = 8e-25
Identities = 74/251 (29%), Positives = 129/251 (50%), Gaps = 4/251 (1%)
Query: 21 VVAWILIPIIVSTLYAFSTK-ADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVA 79
VV + L+P++ + + S K A K+IP+ T + I + S + NSI +
Sbjct: 38 VVGYALLPVL--WILSLSLKPASTVKDGKLIPSLVTFDNYRGIFRSDLFSSALINSIGIG 95
Query: 80 VLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDT 139
+ T +I+ + G A YAIAR F GK + + + + MFP + PL + ++ L DT
Sbjct: 96 LTTTVIAVMFGAMAAYAIARLAFPGKRLLVGTTLLVTMFPAISLVTPLFNIERRVGLFDT 155
Query: 140 LLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAA 199
G+ L + ALP + S+ FA + +LE+A + G T AF+ + +PLA PGL
Sbjct: 156 WAGLILPYITFALPLAIYTLSAFFAEIPWDLEKAAKMDGATSGQAFRKVIVPLAAPGLVT 215
Query: 200 AAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGGAAPAYYKFAAAFIMILPAM 258
AA+ F+ +WN++ +A LT + A + ++ G++ P A A ++ P +
Sbjct: 216 AAILVFIFAWNDLLLALSLTSTKAAITAPVAITNFTGSSQFEEPTGSIAAGAIVITAPII 275
Query: 259 LFIFFARRYLV 269
+F++ +R +V
Sbjct: 276 VFVWIFQRRIV 286
>pir||D70952 probable sugar - Mycobacterium tuberculosis (strain H37RV)
>gi|2695823|emb|CAA15893.1| (AL021006) sugB
[Mycobacterium tuberculosis]
Length = 274
Score = 114 bits (282), Expect = 1e-24
Identities = 74/263 (28%), Positives = 136/263 (51%), Gaps = 5/263 (1%)
Query: 10 KKIAFYAFIFT-VVAWILIPIIVSTLYAFSTK-ADYYNPHKVIPTSFTSQWVKTILFTLG 67
++ ++A + T VV + L+P++ +++ S K K+IP++ T + I
Sbjct: 4 RRATYWAVLDTLVVGYALLPVL--WIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
Query: 68 AWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPL 127
S + NSI + ++T +I+ +LG A YA+AR F GK + + + + MFP + PL
Sbjct: 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
Query: 128 VVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKS 187
+ + L DT G+ L + ALP + S+ F + +LE+A + G T AF+
Sbjct: 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
Query: 188 ITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGGAAPAYYK 246
+ +PLA PGL AA+ F+ +WN++ +A LT + A + ++ G++ P
Sbjct: 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
Query: 247 FAAAFIMILPAMLFIFFARRYLV 269
A A ++ +P ++F+ +R +V
Sbjct: 242 AAGAIVITIPIIVFVLIFQRRIV 264
>emb|CAB90877.1| (AL355752) putative maltose permease [Streptomyces coelicolor
A3(2)]
Length = 303
Score = 113 bits (280), Expect = 2e-24
Identities = 69/231 (29%), Positives = 119/231 (50%), Gaps = 2/231 (0%)
Query: 40 KADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIAR 99
K DY +P ++ + T +L + +K+S+IV++ T +I L+ GYA++R
Sbjct: 66 KNDYLHPGRIW-SKMTFDNYAFVLQDTNFFDWLKSSLIVSLGTTVIGVLVAATTGYAVSR 124
Query: 100 YVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLIT 159
F G + ++ +MFPI V+ +P+ + KL LID G+ L + + A+P+ +
Sbjct: 125 MRFPGYRKLMWVLLVTQMFPIAVLIVPMYQILSKLQLIDNYFGLILVYCSTAVPYCAWLL 184
Query: 160 SSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILT 219
F + E++EAG V GLT +G F + LPLA PGLA A ++F+ ++ EV AS
Sbjct: 185 KGYFDTIPFEIDEAGRVDGLTPFGTFFRLILPLARPGLAVAGFYSFITAFGEVAFASTFM 244
Query: 220 LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVT 270
L + T + + + + A A A ++ +P F + ++ LVT
Sbjct: 245 LSD-TKYTFAVGLQSFVSEHDAQRNLMAATAVLVAIPVSAFFYLVQKNLVT 294
>pir||T47063 hypothetical protein [imported] - Yersinia pestis
>gi|4106651|emb|CAA21406.1| (AL031866) ORF81, len=275
aa, highly similar to Pseudomonas fluorescens MtlG
(mtlG), 39.5% identity in 258 aa overlap, Fasta scores:
opt: 689,E():0, also similar to E. coli MalG protein
35.3% identity in 266 aa overlap, Fasta scores: opt:
626, E(): 0. >
Length = 275
Score = 111 bits (275), Expect = 9e-24
Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 14/281 (4%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWV 59
M++ F+ ++ FY + ++ + L+PI +F T D + P K+ T +
Sbjct: 1 MSDSLKFICQRTGFYLLLVVILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWFTPILDNY- 59
Query: 60 KTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFP 119
+ +L NS+++++++ + +LG Y + ++ + K K I++LR P
Sbjct: 60 RQVLGNGDFIRAFGNSLLISLVSTFLCLILGALFAYGLVFFIER-KGRAKQFIMSLRYAP 118
Query: 120 IPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGL 179
+ ++ IP+ L KL + D L + L +T +PF +L+ ++ F + E+ EA V G
Sbjct: 119 VIMLVIPVYYLITKLGMTDNYLVLILVYTVANVPFTILMVTTFFEDIPPEIREAARVDGA 178
Query: 180 TRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTL---KNRTLPAQILSIVAGA 236
+ W F S+ LPLA GLAA+ + T WNE + +LTL +TLP I S +
Sbjct: 179 SEWRVFLSVMLPLARTGLAASGVLTLFFIWNEFQI--VLTLSGDSTQTLPVAITSFLTFQ 236
Query: 237 AGGAAPAYYKFAAAFIMILPAMLFIFFARRYLV---TMWGI 274
P AA +++LP ++ +++LV TM G+
Sbjct: 237 GTEWGPL---TAAGTLVMLPMLVLGLLVQKHLVRGLTMGGV 274
>gb|AAG09708.1|AF218837_3 (AF218837) unknown [Pasteurella multocida]
Length = 277
Score = 111 bits (274), Expect = 1e-23
Identities = 67/271 (24%), Positives = 133/271 (48%), Gaps = 6/271 (2%)
Query: 3 EKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKT 61
+K + +L I + F+ + P+I L + K + + P + P FT + +
Sbjct: 2 KKKSTLLGDIISHLFLMVTTIIAVFPLIWIFLSSIKGKGELTSEPTRFWPKVFTLDYFEH 61
Query: 62 ILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
+++ L IKNS+ ++++T +I+ + A Y I R+ K + +V +FP
Sbjct: 62 VIYDLNFIVNIKNSLFISLVTTVIAITISSMAAYGIVRFFPKLGSIMSKLLVTTYIFPPI 121
Query: 122 VMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
++AIP + K+ L +T G+ + + + ++P+ V + F V E+EEA + G +
Sbjct: 122 LLAIPYSIAMAKVGLTNTTTGLIVVYLSFSVPYAVWLLVGFFQTVPIEIEEAAKIDGANK 181
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAA 241
+ F I LPL PG+ A A++TF+ +WNE A IL +++ + GA
Sbjct: 182 FTVFFKIVLPLVAPGIVATAIYTFINAWNEFLYALILV---NDTSKMTVAVALRSLNGAE 238
Query: 242 PAYY--KFAAAFIMILPAMLFIFFARRYLVT 270
+ AA+ ++++P+++F F + + +
Sbjct: 239 ILDWGDMMAASVLVVIPSVIFFCFIQNKIAS 269
>sp|P77716|YCJP_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YCJP
>gi|7442792|pir||C64880 probable multiple sugar
transport protein b1312 precursor - Escherichia coli
>gi|1742150|dbj|BAA14888.1| (D90769) Maltose transport
system permease protein MalG. [Escherichia coli]
>gi|1742158|dbj|BAA14895.1| (D90770) Maltose transport
system permease protein MalG. [Escherichia coli]
>gi|1787571|gb|AAC74394.1| (AE000229) putative transport
system permease protein [Escherichia coli K12]
Length = 280
Score = 111 bits (274), Expect = 1e-23
Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 24/273 (8%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWV--------K 60
L +I FY + + L P V + +F + + H PT QW
Sbjct: 8 LSRIGFYCGLALFLIITLFPFFVMLMTSFKGAKEAISLH---PTLLPQQWTLEHYVDIFN 64
Query: 61 TILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPI 120
++F + +NS++V+V++ +++ LGI YA++R FKG+ TI S + MF
Sbjct: 65 PMIFPFVDY--FRNSLVVSVVSSVVAVFLGILGAYALSRLRFKGRMTINASFYTVYMFSG 122
Query: 121 PVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT 180
++ +PL + L + DT + + + LP V + S F + E+EEA M+ GL
Sbjct: 123 ILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFMLKSYFDTIPDEIEEAAMMDGLN 182
Query: 181 RWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVAGAAG 238
R IT+PLA+ GL + ++ F+++WN+ ASI + N TLP + ++
Sbjct: 183 RLQIIFRITVPLAMSGLISVFVYCFMVAWNDYLFASIFLSSASNFTLPVGLNALF----- 237
Query: 239 GAAPAYY---KFAAAFIMILPAMLFIFFARRYL 268
+ P Y AA+ + LP ++ + R++
Sbjct: 238 -STPDYIWGRMMAASLVTALPVVIMYALSERFI 269
>gb|AAD51829.1|AF175299_4 (AF175299) ThuG [Sinorhizobium meliloti]
Length = 276
Score = 109 bits (270), Expect = 4e-23
Identities = 70/269 (26%), Positives = 134/269 (49%), Gaps = 16/269 (5%)
Query: 10 KKIAFYAFIFTVVAWILIPIIVSTLYAFST-----KADYYNPHKVIPTSFTSQWVKTILF 64
K+ AFYA + ++ + P + L + + + DY+ P + ++ +F
Sbjct: 7 KRTAFYALVAVIILVAVFPFYYAILTSLKSGTALFRIDYW-PTDISLANYAG------IF 59
Query: 65 TLGAW-SGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVM 123
+ G + + NS++VA L + IS LL + A YA+AR F+G+ + L+I+++ MFP +
Sbjct: 60 SHGTFVRNLGNSLLVATLVVAISLLLAVTAAYALARVRFRGRGLLLLTILSVSMFPQIAV 119
Query: 124 AIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWG 183
L L + + +T L + ++ LPF V + ++ + E+EEA +V G + W
Sbjct: 120 LAGLFELIRFVGIFNTPLALIFSYMIFTLPFTVWVLTTFMRDLPIEIEEAAIVDGASPWV 179
Query: 184 AFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKN--RTLPAQILSIVAGAAGGAA 241
+ +PL P L + F+ +WNE A T N RT+P I ++++G +
Sbjct: 180 VITRVFMPLMWPALVTTGLLAFIAAWNEFLFALTFTSSNTQRTVPVAI-ALLSGGSQFEI 238
Query: 242 PAYYKFAAAFIMILPAMLFIFFARRYLVT 270
P AA+ I+ +P ++ + +R +++
Sbjct: 239 PWGNIMAASVIVTVPLVVLVLIFQRRIIS 267
>pir||T36900 probable integral membrane transport protein - Streptomyces
coelicolor >gi|5419995|emb|CAB46387.1| (AL096743)
putative integral membrane transport protein
[Streptomyces coelicolor A3(2)]
Length = 298
Score = 108 bits (268), Expect = 6e-23
Identities = 64/228 (28%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 49 VIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTI 108
++P T++ + + G + NS+ V + T++++ L+ + GYA+AR+ F+ K
Sbjct: 69 LVPWPMTTEHFEKVWTDRGFGTYFTNSVYVGLATLVMTTLVALAGGYALARFDFRIKRGF 128
Query: 109 KLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDK 168
L+++ + P ++ +PL ++ L +I++L V +A T LP +++ S+ V
Sbjct: 129 MLALLCSQFVPGALLLVPLFEIFAGLQMINSLGSVIIAETVFQLPLSIILISNFIKNVPY 188
Query: 169 ELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKN---RTL 225
LEEA V G R+ AF+ + LPL PGL A F FV SWN F+ +++ L N +T+
Sbjct: 189 SLEEAAWVDGCGRFRAFRIVVLPLLRPGLIAVGSFAFVHSWNH-FLFALMFLNNQSKQTI 247
Query: 226 PAQILSIVAGAA---GGAAPAYYKFAAAFIMILPAMLFIFFARRYLVT 270
P + S+++ + G A A + +P ++ F +++L+T
Sbjct: 248 PVGLNSLMSADSVDLGALA------AGGIVAAVPVVIVFAFIQKWLIT 289
>pir||T35791 probable transmembrane sugar transport protein - Streptomyces
coelicolor >gi|3288624|emb|CAA19796.1| (AL031013)
putative transmembrane sugar transport protein
[Streptomyces coelicolor A3(2)]
Length = 279
Score = 106 bits (263), Expect = 2e-22
Identities = 65/261 (24%), Positives = 128/261 (48%), Gaps = 12/261 (4%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSI 76
F+ + ++L+P+ V + D + +P++ T + I T+ NS+
Sbjct: 14 FLTLLTGFVLLPVYVMVSSSLKPLEDVSSQFHWLPSNLTIRPYIDIWSTVPLAKYFVNSL 73
Query: 77 IVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLN- 135
IVA + S ++ + A YA++RY F+GK +++++ +MFP + +PL ++Y+ +
Sbjct: 74 IVAGAATVCSVVIAVFAAYAVSRYEFRGKRVFSVTVLSTQMFPGILFLLPLFLIYVNIGN 133
Query: 136 -----LIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITL 190
L + G+ L + +LPF + + F V ++L+EA +V G A + +
Sbjct: 134 ATGIALFGSRGGLILTYLTFSLPFSIWMLIGYFDSVPRDLDEAALVDGCGPLRALFKVVV 193
Query: 191 PLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYK--FA 248
P A+PG+ A A++ F+ +W EV AS++T + L++ Y+ A
Sbjct: 194 PAAIPGIVAVAVYAFMTAWGEVLFASVMT----NDATRTLAVGLQGYSTQNDVYWNQIMA 249
Query: 249 AAFIMILPAMLFIFFARRYLV 269
A+ ++ +P + +RYLV
Sbjct: 250 ASLVVSVPVVAGFLLLQRYLV 270
>gb|AAK41272.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 267
Score = 106 bits (263), Expect = 2e-22
Identities = 75/256 (29%), Positives = 121/256 (46%), Gaps = 7/256 (2%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYNPH--KVIPTSFTSQWVKTILFTLGAWSGI 72
Y V + L P+ + L AF++ ++P S T + T L
Sbjct: 6 YLGAIVVGIYFLFPLYILVLLAFNSPKYTVLAKFPSLLPVSLTLNNLLTALQGTAFIDPF 65
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
S+ A L II+ L IPAGY ++R +I + ++ M P V+ IP+ V ++
Sbjct: 66 IKSLETATLVGIITIALAIPAGYGLSRLPRAIAYSIIILLLVTNMMPAIVIGIPIAVDFL 125
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
KL+L ++++G+ALA T + LP I F+ + +LE V G + S+ LPL
Sbjct: 126 KLHLFESVVGLALAQTLITLPLATFILQGTFSSIPIDLEHQARVDGANLFNRLFSVLLPL 185
Query: 193 ALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFI 252
A PG+AAA + +++ SW+E A +L + TLP I V A A+ + I
Sbjct: 186 AAPGIAAAFLISWMFSWDEFTYAILLIPYHSTLPVTIYQDVTRGNLLAGIAF-----SLI 240
Query: 253 MILPAMLFIFFARRYL 268
LP ++ F ++YL
Sbjct: 241 FTLPVIILTFALQKYL 256
>pir||F83194 polyamine transport protein PotC PA3609 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949766|gb|AAG06997.1|AE004781_5 (AE004781)
polyamine transport protein PotC [Pseudomonas
aeruginosa]
Length = 256
Score = 106 bits (262), Expect = 3e-22
Identities = 69/247 (27%), Positives = 126/247 (50%), Gaps = 15/247 (6%)
Query: 21 VVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAV 80
V ++ +P+++ LY+F+ N V FT W + + NS+++A+
Sbjct: 14 VYLFLYVPLVIVVLYSFNDSR--LNAEWV---GFTLDWYRKLFGNRDMLQAAANSLVIAL 68
Query: 81 LTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTL 140
++ ++ LLG AG A+ R+ + + L+ +A+ P +M + LV+ +I LN+ +
Sbjct: 69 VSASVATLLGTLAGVALHRFKLRVLPLLVLTPIAI---PELLMGVSLVIFFIGLNMSLGM 125
Query: 141 LGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAA 200
L V LAH ++ FV L+ + +G+D+ L EA G T W +F +TLPL +PG+ A
Sbjct: 126 LSVTLAHITFSVGFVALVVQARMSGMDESLTEAARDLGATPWQSFHLVTLPLIMPGIVAG 185
Query: 201 AMFTFVMSWNEVFVASILTLKN--RTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAM 258
A+ F +S ++ FV + T TLP QI +++ A A + +M+L +
Sbjct: 186 ALMAFTLSIDD-FVITFFTAGGGFATLPTQIYTMIKIAVTPEVNA----VSTLLMLLTLV 240
Query: 259 LFIFFAR 265
L + ++
Sbjct: 241 LIVIASK 247
>sp|O32154|YURM_BACSU HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YURM
>gi|7442794|pir||D70018 sugar permease homolog yurM -
Bacillus subtilis >gi|2635755|emb|CAB15248.1| (Z99120)
similar to sugar permease [Bacillus subtilis]
Length = 300
Score = 106 bits (261), Expect = 4e-22
Identities = 75/261 (28%), Positives = 124/261 (46%), Gaps = 17/261 (6%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYN-----PHKVIPTSFTSQWVKTILFTLGAW 69
+ F+F + I P++ + AF D + P P +F S W + G
Sbjct: 38 WVFLFLYLIAIAYPLLWMVMSAFKNSDDIFEHSWSLPSSWHPENFVSAWNQ------GIS 91
Query: 70 SGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVV 129
S NS+IV LT +I+ + A Y ++R+ FKGK + + M V +PL
Sbjct: 92 SYFMNSVIVTALTCVITVFISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYS 151
Query: 130 LYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSIT 189
+ L L +T + L + A +PF +++ S F + KELEEA + G T +G F I
Sbjct: 152 IIQSLGLYNTYWALILPYAAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIF 211
Query: 190 LPLALPGLAAAAMFTFVMSWNEVFVASILTLKN---RTLPAQILSI--VAGAAGGAAPAY 244
LP+++P L + + T +WNE F+ +I+ + + RT+PA ++ G A
Sbjct: 212 LPMSVPILVTSGILTAYHTWNE-FMFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAG 270
Query: 245 YKFAAAFIMILPAMLFIFFAR 265
+AA I+IL ++ +F R
Sbjct: 271 LTISAAPIIILFLLMQKYFVR 291
>pir||S75972 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001332|dbj|BAA10819.1| (D64006) membrane bound
sugar transport protein [Synechocystis sp.]
Length = 298
Score = 105 bits (260), Expect = 5e-22
Identities = 79/277 (28%), Positives = 131/277 (46%), Gaps = 12/277 (4%)
Query: 2 NEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNP-------HKVIPTSF 54
N KT F +K+ + I T+ +P + + + + D + H + T F
Sbjct: 15 NRKTEFW-QKLPIHIAILTIAFIWTLPSLGLFISSLRPRGDMLSTGWWTVFWHPLEITQF 73
Query: 55 TSQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVA 114
+L + G NS+ +AV +I + A YA A F G+ + + +V
Sbjct: 74 YLGNYGDVLRSSGMGEAFLNSLTIAVPATVIPIAIATFAAYAFAWMTFPGRQLLFILVVC 133
Query: 115 LRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAG 174
L + P+ IP++ +Y +L L T LGV LAHTA LP + + + + K+L EA
Sbjct: 134 LLVVPLQTTLIPVLRVYAQLGLAGTFLGVWLAHTAYGLPLGIYLLRNYIGALPKDLIEAA 193
Query: 175 MVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVA 234
V G + F + +PL++P +A+ A+F F+ WN++ VA ++ L A + ++
Sbjct: 194 AVDGASHLKIFTKLIVPLSMPAIASFAVFQFLWVWNDLLVA-LVYLGGTADVAPVTIQLS 252
Query: 235 GAAGGAAPAYYKF-AAAFI-MILPAMLFIFFARRYLV 269
G +Y A AFI MI+P M+F F +RY V
Sbjct: 253 NLVGSRGQDWYLLTAGAFISMIVPLMVF-FGLQRYFV 288
>sp|P55603|Y4OR_RHISN PROBABLE ABC TRANSPORTER PERMEASE PROTEIN Y4OR
>gi|2182562|gb|AAB91804.1| (AE000089) Y4oR [Rhizobium
sp. NGR234]
Length = 277
Score = 105 bits (260), Expect = 5e-22
Identities = 66/208 (31%), Positives = 109/208 (51%), Gaps = 11/208 (5%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
I NS +V ++++++ + PA YA+A +V K T+ ++I+ R+ P + +P+ +L
Sbjct: 74 IINSAVVTIVSVVLVIAVSAPAAYALA-HVTKRGGTLLVAILVARIIPGIAIGVPVYLLA 132
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
+L+ +DT + + + A+ +PF + + S F V L EA + G + W F I +P
Sbjct: 133 TRLHQLDTYQALIIINVAVNIPFAIWLMRSFFMEVHPTLREAAISDGCSEWQVFTKIMMP 192
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLK-NRTLPAQILSIVA--GAAGGAAPAYYKFA 248
L L G+ A A+F F+ WNE A ILT + T P +L G A A
Sbjct: 193 LVLGGMLATAVFVFIAVWNEFLFALILTTSVSPTAPLAMLGFRTQYGVQWDAVG-----A 247
Query: 249 AAFIMILPAMLFIFFARRYLVTMWGITL 276
AAF++ P + F F +RYLV G+T+
Sbjct: 248 AAFLVSTPVIAFAFIMQRYLVQ--GLTM 273
>dbj|BAB06643.1| (AP001517) maltose/maltodextrin transport system (permease)
[Bacillus halodurans]
Length = 280
Score = 104 bits (257), Expect = 1e-21
Identities = 76/277 (27%), Positives = 138/277 (49%), Gaps = 13/277 (4%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
MN+K L+ A Y F+ + IL P++ + + + ++ ++IP + + + +
Sbjct: 1 MNKKVKSRLEVTAIYLFLLVMGIVILYPLLWTVGLSLNPGTSLFSS-RMIPETISFRHYE 59
Query: 61 TILFTLGA----WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALR 116
+ F + W KN++IVA +T + S L YA +RY F G+ + L+
Sbjct: 60 WLFFDPRSNYLQW--YKNTLIVASVTSVCSTFLVALTAYAFSRYRFVGRTYGLYGFLLLQ 117
Query: 117 MFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMV 176
MFP+ + + L +L +NL+DTLLG+ L + ++P + F + +EL+E+ +
Sbjct: 118 MFPVLMAMVALYILLNTVNLLDTLLGLILIYVGTSIPMNAFLVKGYFDTIPRELDESAKL 177
Query: 177 FGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVA 234
G + F +I LPLA P LA A+F F+ + + + I+ + +N TL + + V
Sbjct: 178 DGAGHFRIFFTIMLPLAKPILAVVALFNFMSPFMDFILPRIILRSPENYTLALGLFNFVN 237
Query: 235 GAAGGAAPAYYKFAAAFIMI-LPAMLFIFFARRYLVT 270
A + +FAA I+I +P F +RYL++
Sbjct: 238 DQ---FANNFTRFAAGAILIAIPIATVFLFLQRYLIS 271
>emb|CAB87330.1| (AL163672) putative integral membrane transport protein
[Streptomyces coelicolor A3(2)]
Length = 305
Score = 104 bits (257), Expect = 1e-21
Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 23/265 (8%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPH--KVI--PTSFTSQWVKTILFTLGAWSGI 72
F+ V + L+P I L + T D KV+ P+ T Q + +L S +
Sbjct: 42 FLIVVGLFWLVPTIGLLLSSLRTPEDMAASGWWKVLTEPSQLTFQSYEELLKNGDITSSL 101
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
N+ ++ V ++ ++G AGYA A F G+D L++V L + P+ V IP+ L+
Sbjct: 102 LNTALITVPATVLVVVIGALAGYAFAWMEFPGRDWWFLAVVGLLVVPVQVALIPIAELFG 161
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
K+ L ++LGV L H LPF V + + FA + +EL EA + G F + +PL
Sbjct: 162 KIGLFGSMLGVILFHVGFGLPFAVFLLRNFFAEIPRELLEAARLDGAGELRLFVRVVMPL 221
Query: 193 ALPGLAAAAMFTFVMSWNEVFVASI--------LTLKNRTLPAQILSIVAGAAGGAAPAY 244
P +A+ +F F+ WN++ VA I +T+ +T Q + + A G
Sbjct: 222 GGPAIASLGIFQFLWVWNDMLVALIFSDSGNQPITVALQTQVRQFGNNIDVLAPG----- 276
Query: 245 YKFAAAFI-MILPAMLFIFFARRYL 268
AFI M++P +F F R+++
Sbjct: 277 -----AFISMVIPLAVFFAFQRQFV 296
>pir||D72378 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980926|gb|AAD35505.1|AE001721_4
(AE001721) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 283
Score = 104 bits (257), Expect = 1e-21
Identities = 72/273 (26%), Positives = 133/273 (48%), Gaps = 8/273 (2%)
Query: 3 EKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTK-ADYYNPHKVIPTSFTSQWVKT 61
+K + ++ + +F + + ILI + L +FS + + P K+ ++ W +
Sbjct: 8 QKNSEKIRNLIIIVILFLITSPILIGYVWLVLRSFSEDLVNGFVPTKLTLKNWRFLW-EE 66
Query: 62 ILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
I W N+ ++A+ + + + GYA++RY F G+ ++ I+AL FP
Sbjct: 67 IKGYPNIWQTTLNTALLALGVMGVEVAITSLGGYALSRYDFPGRSSMMKFILALHAFPAI 126
Query: 122 VMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
+ + L L L+DTL GV L ++ +P+ I + G+ ELE AG+V G +R
Sbjct: 127 SLMTAVFYLLWTLKLLDTLWGVILLKASLEVPWGTWIMKGFYDGIPWELEWAGLVDGYSR 186
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNE-VFVASILTLKNRTLPAQILSIVAGAAGGA 240
+ ++ + LPL PG+A A+F F+ W+E VFV + + +N + V G G
Sbjct: 187 FQVWRRVLLPLVKPGIAVTAIFAFLSGWSEFVFVNTFIFSQNLW---TLSKYVKGFIGDY 243
Query: 241 APAYYKF--AAAFIMILPAMLFIFFARRYLVTM 271
A Y A ++P ++F FF ++++ +
Sbjct: 244 RFADYGLVTAVGLFYMIPTIIFFFFVSKHMIKL 276
>gb|AAC44395.1| (U43526) ORF-4 [Streptococcus pneumoniae]
Length = 277
Score = 103 bits (255), Expect = 2e-21
Identities = 65/241 (26%), Positives = 120/241 (48%), Gaps = 5/241 (2%)
Query: 21 VVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAV 80
V + L+ II+S++ Y P + P FT + ++ L I+NS+I+A+
Sbjct: 23 VAVFPLVWIIISSVKGKGELTQY--PTRFWPEQFTLDYFTHVINDLHFIDNIRNSLIIAL 80
Query: 81 LTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTL 140
T +I+ ++ A Y I R+ K + +V +FP ++AIP + K+ L ++L
Sbjct: 81 ATTLIAIIISAMAAYGIVRFFPKLGAIMSRLLVITYIFPPILLAIPYSIAIAKVGLTNSL 140
Query: 141 LGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAA 200
G+ + + + ++P+ V + F V +EEA + G ++ F + LP+ PG+ A
Sbjct: 141 FGLMMVYLSFSVPYAVWLLVGFFQTVPIGIEEAARIDGANKFVTFYKVVLPIVAPGIVAT 200
Query: 201 AMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAY-YKFAAAFIMILPAML 259
A++TF+ +WNE A IL N T + + G + AA+ I++LP+++
Sbjct: 201 AIYTFINAWNEFLYALILI--NNTGKMTVAVALRSLNGSEILDWGDMMAASVIVVLPSII 258
Query: 260 F 260
F
Sbjct: 259 F 259
>sp|O58760|YJ16_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN PH1036
>gi|7442815|pir||H71096 probable maltose transport inner
membrane protein - Pyrococcus horikoshii
>gi|3257451|dbj|BAA30134.1| (AP000004) 276aa long
hypothetical maltose transport inner membrane protein
[Pyrococcus horikoshii]
Length = 276
Score = 103 bits (254), Expect = 3e-21
Identities = 64/215 (29%), Positives = 113/215 (51%), Gaps = 10/215 (4%)
Query: 63 LFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPV 122
+F +G G+KNS+IVA+ + I+ ++ A YA ARY F K + IV L P +
Sbjct: 63 MFPIG--EGLKNSLIVAIPSTIVPVIVASLAAYAFARYSFPIKHYLFAFIVLLMALPQQM 120
Query: 123 MAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRW 182
+PL L +L++T G+ + H+A L +++ + F+ + ++EEA + G T +
Sbjct: 121 TVVPLYFLLRNAHLLNTFRGLIIVHSAWGLAWIIFFMRNYFSMLPTDVEEAAKIDGATDF 180
Query: 183 GAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASI-LTLKNRTLPAQILSIVAG---AAG 238
F I LP+ALPGL +A++ F W++ F+A + L + + Q L ++ G
Sbjct: 181 QIFYKIVLPMALPGLISASILQFTWVWSDFFLALVFLQNPEKYVATQRLPLLRGQYFVDW 240
Query: 239 GAAPAYYKFAAAFIMILPAMLFIFFARRYLVTMWG 273
G A A+ +M++P +++ F + Y+ M G
Sbjct: 241 GLLTA----ASIMVMLVPLLVYALFQKYYISGMIG 271
>sp|Q9Z3R7|AGLG_RHIME ALPHA-GLUCOSIDES TRANSPORT SYSTEM PERMEASE PROTEIN AGLG
>gi|4210905|gb|AAD12048.1| (AF045609) AglG
[Sinorhizobium meliloti]
Length = 305
Score = 103 bits (254), Expect = 3e-21
Identities = 69/227 (30%), Positives = 114/227 (49%), Gaps = 11/227 (4%)
Query: 51 PTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKL 110
P FT +L G NS+ VAV + +I L+ A YA+A F G+ +
Sbjct: 71 PPRFTLDNYAEVLSAAGIGRSFLNSLTVAVPSTVIPILIAAFAAYALAWMPFPGRAVLLA 130
Query: 111 SIVALRMFPIPVMAIPLVVLYIKLNLI-----DTLLGVALAHTAMALPFVVLITSSIFAG 165
+V L + P+ + IPL+ LY + T +G+ LAHT LP + + + AG
Sbjct: 131 VVVGLLVVPLQMSLIPLLQLYNGVGAFFGVSAKTYMGIWLAHTGFGLPLAIYLLRNYMAG 190
Query: 166 VDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILT---LKN 222
+ +E+ E+ V G + + F I LPL+ P LA+ A+F F+ +WN++ VA +
Sbjct: 191 LPREIMESARVDGASDFDIFVKIILPLSFPALASFAIFQFLWTWNDLLVAIVFLGAGDDK 250
Query: 223 RTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
L ++++++ G+ GG A+AFI I+ ++ F +RYLV
Sbjct: 251 LVLTGRLVNLL-GSRGGNWEIL--TASAFITIVVPLIVFFALQRYLV 294
>pir||F75395 ABC transporter, permease protein, MalFG family - Deinococcus
radiodurans (strain R1)
>gi|6459197|gb|AAF11008.1|AE001988_4 (AE001988) ABC
transporter, permease protein, MalFG family [Deinococcus
radiodurans]
Length = 283
Score = 103 bits (254), Expect = 3e-21
Identities = 70/260 (26%), Positives = 121/260 (45%), Gaps = 4/260 (1%)
Query: 14 FYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVI-PTSFTSQWVKTILFTLGAWSGI 72
F+ + TV+ ++L P + + + + + PT + + +L G +
Sbjct: 16 FWVVVATVLFYVLFPFYWAIKTSLTGSGELSREALLWWPTHPSLKNFTEVLTNGGFLRNL 75
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
NS++VA T+++S LL + A YA+ ++ FKGK + I+A+ +FP + L +
Sbjct: 76 LNSVVVATGTVLLSLLLSVLAAYALGKFRFKGKSVLMYIILAVSVFPQIAVLSGLYTMVK 135
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
L +T G+ L++ LPF V +S + ELEEA V G T + LP+
Sbjct: 136 GFGLYNTWWGLILSYMIFTLPFTVWTLTSFVREIPTELEEAAYVDGATPMQTLFQVLLPV 195
Query: 193 ALPGLAAAAMFTFVMSWNEVFVASILTLKN--RTLPAQILSIVAGAAGGAAPAYYKFAAA 250
P L + F+ +WNE A T N T+P I + +GA P AA+
Sbjct: 196 MTPALVTTGLLAFINAWNEYLFALTFTSDNAASTVPVAIANF-SGATQYETPFGLTMAAS 254
Query: 251 FIMILPAMLFIFFARRYLVT 270
I+ +P +L + +R +V+
Sbjct: 255 VIVTVPLLLLVLVFQRNIVS 274
>dbj|BAB04622.1| (AP001510) L-arabinose transport system (permease) [Bacillus
halodurans]
Length = 279
Score = 101 bits (250), Expect = 8e-21
Identities = 79/270 (29%), Positives = 134/270 (49%), Gaps = 18/270 (6%)
Query: 13 AFYAFI--FTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWS 70
AF AFI F ++ IL ST + ++P + +F + + L+ W+
Sbjct: 18 AFIAFIAVFPLLNLILASFRPSTELMRNGITLIFDPSTLTLDNFIYIFTEAGLY----WT 73
Query: 71 GIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVL 130
NS+ ++++ +++S L GYA+A Y FKG++ L ++ + M P ++ +PL L
Sbjct: 74 WFGNSVWISIVIVVLSLLFSSMVGYALAVYDFKGRNFFFLLVLIILMIPFEILMLPLFQL 133
Query: 131 YIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITL 190
IKL L++T V L A+ P V G+ KEL +A + G T +G F I L
Sbjct: 134 MIKLQLVNTYTAVIL--PAIVAPIAVFFFRQYALGLPKELMDAARIDGCTEYGIFFKIML 191
Query: 191 PLALPGLAAAAMFTFVMSWNEVFVASILTLKNR---TLPAQILSIVAGAAGGAAPAYYKF 247
PL P LAA A+ + SWN F+ ++ L++ TLP + +++
Sbjct: 192 PLMGPSLAAMAILQGLNSWNN-FLWPLVVLRSNDMFTLPIGLATLLTPYGNNYD---ILL 247
Query: 248 AAAFIMILP-AMLFIFFARRYL--VTMWGI 274
A + + I+P +LFIFF R ++ +T+ G+
Sbjct: 248 AGSVMTIVPIVILFIFFQRYFIAGLTVGGV 277
>pir||H75206 maltose transport system permease protein malg PAB0121 - Pyrococcus
abyssi (strain Orsay) >gi|5457612|emb|CAB49103.1|
(AJ248283) MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN
MALG [Pyrococcus abyssi]
Length = 412
Score = 101 bits (250), Expect = 8e-21
Identities = 61/209 (29%), Positives = 111/209 (52%), Gaps = 7/209 (3%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
+KNS+I+A+LT+ ++ L +PA YA +R F G++ + + + L+ LY
Sbjct: 202 LKNSLILALLTVTLTLLFVVPAAYAFSRLKFFGREHVLYFYLMFTQVAGGLGIAGLIALY 261
Query: 132 ---IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
+KL L + L +AL + A ++PF + S ++ + +EA ++ G T + +
Sbjct: 262 GIMVKLGLFNKLPALALVYAAGSVPFNTWLLKSYIDSINPDFDEAALIDGATYLQIIRYV 321
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVASILTLK-NRTLPAQILSIVAGAAGGAAPAYYKF 247
LP+ALPG+A A+ +F+ W E +AS+L + N+ L I +++ G G Y+
Sbjct: 322 LLPMALPGIATVAVMSFIGGWTEFILASLLLEQANQPLSVWIYTLMGGIGRGIDWNYFA- 380
Query: 248 AAAFIMILPAMLFIFFARRYLVTMWGITL 276
AA + LP + A++Y+ + G+TL
Sbjct: 381 AATLLFALPVFVMFMLAQKYIRS--GLTL 407
>pir||T08161 MalG homolog - Pyrococcus furiosus (fragment)
>gi|2435437|gb|AAB71228.1| (AF016588) putative integral
membrane component of starch degradation products
transport [Pyrococcus furiosus]
Length = 265
Score = 100 bits (247), Expect = 2e-20
Identities = 59/201 (29%), Positives = 105/201 (51%), Gaps = 5/201 (2%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
++NS+I+A LT+ ++ L +PA YA +R F G++ I + + L+ LY
Sbjct: 55 LRNSLILATLTVFLTLLFVVPAAYAFSRLKFFGREHILYFYLMFTQVAGGLGIAGLIALY 114
Query: 132 ---IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
+KL L + L +A+ + A ++PF + S + + +EA +V G + + +
Sbjct: 115 GMLVKLGLYNKLPALAIIYAAGSVPFNTWLLKSYIDSISPDFDEAALVDGASYLQIIRYV 174
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVAS-ILTLKNRTLPAQILSIVAGAAGGAAPAYYKF 247
LP+ALPG+A A+ +F+ W E +AS +LT +N+ L I +++ G G Y+
Sbjct: 175 LLPMALPGIATVAVMSFIGGWTEFILASLLLTEENQPLSVWIYTLMGGIGRGIDWNYFA- 233
Query: 248 AAAFIMILPAMLFIFFARRYL 268
AAA + LP + A+ Y+
Sbjct: 234 AAALLFALPVFIMFMLAQNYI 254
>pir||S63616 malG protein homolog cymG - Klebsiella oxytoca
>gi|854234|emb|CAA60006.1| (X86014) cymG [Klebsiella
oxytoca]
Length = 277
Score = 100 bits (246), Expect = 2e-20
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 3/260 (1%)
Query: 12 IAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSG 71
I Y F+ +L P+I + + + + ++ SFT + +L
Sbjct: 11 ILVYLFLLLNALVVLGPVIWTVMSSLKPGNNLFSSG-FTEISFTLEHYHNLLTGTPYLKW 69
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
KN+ I+A ++IS ++ + +RY FK K I +SI+ L+MFP + + +L
Sbjct: 70 YKNTFILATCNMLISLVVVTITAFIFSRYRFKAKKKILMSILVLQMFPAFLSMTAIYILL 129
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
K+NLIDT +G+ L + +LPF+ + F + L+EA + G F I LP
Sbjct: 130 SKMNLIDTYIGLLLVYVTGSLPFMTWLVKGYFDAIPTSLDEAAKIDGAGHLTIFFEIILP 189
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAA-A 250
LA P L A+ +F W + F+ L L++ + I + + +A + FAA A
Sbjct: 190 LAKPILVFVALVSFTGPWMD-FILPTLILRSEDKMTLAIGIFSWISSNSAENFTLFAAGA 248
Query: 251 FIMILPAMLFIFFARRYLVT 270
++ +P L ++++ T
Sbjct: 249 LLVAVPITLLFIVTQKHITT 268
>pir||T35672 probable transmembrane transport protein - Streptomyces coelicolor
>gi|2661679|emb|CAA15784.1| (AL009199) probable
transmembrane transport protein [Streptomyces coelicolor
A3(2)]
Length = 302
Score = 100 bits (246), Expect = 2e-20
Identities = 60/195 (30%), Positives = 102/195 (51%), Gaps = 2/195 (1%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+IV V +I+ LLG Y +AR+ F G+ I ++A FP+ + +PL
Sbjct: 97 NSVIVVVSALILVMLLGAMCAYVLARFEFPGRRLIYYVMLAGLTFPVFLAIVPLFFQLQN 156
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L++T G+ L + A ALPF + S F + ++ EA ++ G W AF + LP+A
Sbjct: 157 FGLLNTRPGLILTYVAFALPFTMFFLYSFFRSLPHDVYEAALIDGAGDWRAFFQVMLPMA 216
Query: 194 LPGLAAAAMFTFVMSWNEVFV-ASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFI 252
PG+AA A+F F+ WN+ + ++ T +++ + Q ++ A + FAA +
Sbjct: 217 RPGMAAVAIFNFLGLWNQFLLPVALNTDQDKWVLTQGMAAYASSQVYDIDYGALFAAIVV 276
Query: 253 MILPAML-FIFFARR 266
++P +L + F RR
Sbjct: 277 TVVPVLLVYCVFQRR 291
>emb|CAA68974.1| (Y07706) putative maltose permease [Streptomyces coelicolor]
Length = 302
Score = 99.8 bits (245), Expect = 3e-20
Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 3/231 (1%)
Query: 40 KADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIAR 99
K DY +P ++ + T +L + +K+S+IV++ T +I L+ +R
Sbjct: 66 KNDYLHPGRIW-SKMTFDNYAFVLQDTNFFDWLKSSLIVSLGTTVIGVLVAATTATR-SR 123
Query: 100 YVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLIT 159
F G + ++ +MFPI V+ +P+ + KL LID G+ L + + A+P+ +
Sbjct: 124 MRFPGYRKLMWVLLVTQMFPIAVLIVPMYQILSKLQLIDNYFGLILVYCSTAVPYCAWLL 183
Query: 160 SSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILT 219
F + E++EAG V GLT +G F + LPLA PGLA A ++F+ ++ EV AS
Sbjct: 184 KGYFDTIPFEIDEAGRVDGLTPFGTFFRLILPLARPGLAVAGFYSFITAFGEVAFASTFM 243
Query: 220 LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVT 270
L + T + + + + A A A ++ +P F + ++ LVT
Sbjct: 244 LSD-TKYTFAVGLQSFVSEHDAQRNLMAATAVLVAIPVSAFFYLVQKNLVT 293
>emb|CAB72190.1| (AL138851) putative sugar transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 281
Score = 98.7 bits (242), Expect = 7e-20
Identities = 63/212 (29%), Positives = 100/212 (46%), Gaps = 24/212 (11%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+IVA +I S L+ A A+ R+ F+ + T+ + + +M P+ + IPL L
Sbjct: 77 NSLIVAGSVVIASALIAFLAATAVTRFRFRFRTTLLIMFLVAQMVPVEALTIPLFFLMRD 136
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
++TL + L H A +LPF + + V + LEEA + G +R I PL
Sbjct: 137 FGQLNTLGSLILPHIAFSLPFAIWMLRGFVKAVPEALEEAAYIDGASRTRFLWQILFPLV 196
Query: 194 LPGLAAAAMFTFVMSWNEVFVAS---ILTLKNRTLPAQILSIVAGAAGGAAPAYYK---- 246
LPGL A ++F+F+ +WN+ A I TLP +L +YK
Sbjct: 197 LPGLVATSVFSFISTWNDFLFAKSFIISDTSQSTLPMALL------------VFYKPDDP 244
Query: 247 -----FAAAFIMILPAMLFIFFARRYLVTMWG 273
AA+ +M +P ++F +R LV+ G
Sbjct: 245 DWGGVMAASTVMTIPVLVFFVLVQRRLVSGLG 276
>emb|CAB86097.1| (AL163003) putative sugar transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 287
Score = 98.7 bits (242), Expect = 7e-20
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 5/248 (2%)
Query: 21 VVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVA 79
V A L P++ + + ++ + P +P +T Q K + T NS++V+
Sbjct: 30 VSAVFLAPLLWALFTSLKSETEAVEVPTHWLPDDWTGQAWKALFETGNITDWFVNSLVVS 89
Query: 80 VLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDT 139
V I L+ AGY AR F+GK + ++A M V+ +PL ++ ++DT
Sbjct: 90 VCVTAIVLLVSALAGYGFARTEFRGKGLLMGVVMAGLMVSPAVLGVPLFTTVQQMGMVDT 149
Query: 140 LLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAA 199
G+ L A A +V I F G+ +ELEEA + G RW F +I +PL+ P LAA
Sbjct: 150 YWGMILPQCAPAA--MVYILYKFFQGIPRELEEAAFIDGAGRWRVFFTIIVPLSRPSLAA 207
Query: 200 AAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILP-AM 258
+FTF+ SWN F+ + N L I A + LP +
Sbjct: 208 VGIFTFISSWNN-FLWPYMVTNNPDLMTMPNGIATVMNSYGIQWAQLMAGGLMAGLPLIV 266
Query: 259 LFIFFARR 266
+F+FF R+
Sbjct: 267 VFVFFQRQ 274
>dbj|BAB07407.1| (AP001519) sugar transport system (permease) [Bacillus halodurans]
Length = 273
Score = 98.7 bits (242), Expect = 7e-20
Identities = 66/260 (25%), Positives = 130/260 (49%), Gaps = 5/260 (1%)
Query: 11 KIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAW- 69
KI Y+ + P + + +F + + P+++T + I+ T +
Sbjct: 8 KIILYSLLIGYAFVTFTPFMWAFFASFKPLNEIVGSFSLFPSNWTLDNYQYIISTQPLFV 67
Query: 70 SGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVV 129
+ NS+I+AV+ ++ L AGYA+AR F+G+ ++ + ++A+ M P V IP +
Sbjct: 68 RWLMNSVIIAVVGTALNLLFNSMAGYALARLSFRGRKSMFILVLAVLMIPGQVTMIPNYL 127
Query: 130 LYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSIT 189
+ +L +++ G+ + AM + + F KE+EEA + GL++ G F I
Sbjct: 128 ILRELGWLNSYEGMIVP--AMVNATFIFMMRQFFVNFPKEVEEAAAMDGLSQMGTFFRIV 185
Query: 190 LPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAA 249
LP+A P LAA A+F F+ WN+ F+ ++ + + ++ + + + + Y AA
Sbjct: 186 LPMAKPALAAQAIFVFMALWND-FMRPLIVMSDASMYTLPVGLNSFQSDNVTFWNYVMAA 244
Query: 250 AFIMILPAM-LFIFFARRYL 268
+ I LP + ++ FF+R ++
Sbjct: 245 SMIFTLPVLVIYAFFSRFFI 264
>sp|P23859|POTC_ECOLI SPERMIDINE/PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTC
>gi|96439|pir||C40840 spermidine/putrescine transport
system permease potC - Escherichia coli
>gi|147328|gb|AAC37040.1| (M64519) transport protein
[Escherichia coli] >gi|1651551|dbj|BAA35944.1| (D90747)
Spermidine/putrescine transport system permease protein
PotC. [Escherichia coli] >gi|1787368|gb|AAC74208.1|
(AE000212) spermidine/putrescine transport system
permease [Escherichia coli K12]
Length = 264
Score = 98.3 bits (241), Expect = 9e-20
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%)
Query: 8 MLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLG 67
M+ ++ F+ + A++ IPII+ + +F++ N FT++W ++
Sbjct: 1 MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQ-----GFTTKWYSLLMNNDS 55
Query: 68 AWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPL 127
++S+ +AV + + L+G A+ RY F+GK + + + M P VMAI L
Sbjct: 56 LLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISL 115
Query: 128 VVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKS 187
+VL++ L + + +H LPFVV+ S G D + EA G + + +
Sbjct: 116 LVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRK 175
Query: 188 ITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKN-RTLPAQILSIV 233
I LPLA+P +AA + +F +S ++V V+S +T + LP +I S+V
Sbjct: 176 IILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKIYSMV 222
>emb|CAB61806.1| (AL133236) putative sugar-permease [Streptomyces coelicolor A3(2)]
Length = 293
Score = 98.3 bits (241), Expect = 9e-20
Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 5/196 (2%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+ V + T + + ++G AGY ++R + LS+ ++ P+ V IPL V++ K
Sbjct: 90 NSLAVTLGTTVFAVVIGALAGYPMSRLRNRFIGGYTLSLFVVQSLPVIVFVIPLFVVFAK 149
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
+ + DTL GVA+ A + + ++ + + ELEEA V G + WG F + L +
Sbjct: 150 IGMADTLSGVAVIFIAGGMAVTCWMMAAYYDSIPVELEEAAWVDGASLWGGFVRVVLRNS 209
Query: 194 LPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
PG+ +AA+F+F+++WN+ VA++ + N TLP + + A P A +
Sbjct: 210 YPGILSAAIFSFLVAWNDYLVATVFLRSQSNFTLPIGLQTYFQQNATDWGPV---MAMSV 266
Query: 252 IMILPAMLFIFFARRY 267
+M+LP ++ R+
Sbjct: 267 VMLLPPVIVFAVLNRF 282
>emb|CAC11827.1| (AL445065) probable sugar ABC transporter, permease protein
[Thermoplasma acidophilum]
Length = 291
Score = 98.3 bits (241), Expect = 9e-20
Identities = 59/199 (29%), Positives = 100/199 (49%), Gaps = 5/199 (2%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+ V++ + S +G+ AGYA AR F G+D + +++A M P PV++I V +
Sbjct: 88 NSVFVSICVVAGSVFVGMLAGYAFARLKFPGRDYMFYAVLATLMIPFPVISIASYVFMLD 147
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
LN + T G+ L A AL V I F + +E+E A + G+ W F ++ P+A
Sbjct: 148 LNWLSTYQGLILPQIASALD--VFIMRQYFLTIPEEVELAAKIDGMKPWQIFFRVSAPMA 205
Query: 194 LPGLAAAAMFTFVMSWNEVF--VASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
P +AAA +F+F+ SWN + + +L TLP +L+ GA G
Sbjct: 206 KPAIAAATIFSFIGSWNNFLWPLMEVHSLNMFTLPL-VLNFFKGANGTQIYWNQMMTVNI 264
Query: 252 IMILPAMLFIFFARRYLVT 270
+ ++P ++ +Y ++
Sbjct: 265 LTMIPTIVIFVVFEKYFIS 283
>emb|CAB72404.1| (AL138978) putative integral membrane transport protein
[Streptomyces coelicolor A3(2)]
Length = 296
Score = 97.9 bits (240), Expect = 1e-19
Identities = 67/260 (25%), Positives = 118/260 (44%), Gaps = 8/260 (3%)
Query: 10 KKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAW 69
++ A A + A ++P+ L A A +P T IL +
Sbjct: 29 RRTAADAGLLVAAAAFVLPLAWVVLSALDPHASL---RVKVPDGVTLDNFDAILTPEITF 85
Query: 70 SGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVV 129
+ + NS+I+ +++ + + A Y ++R+ + L+I+ PI + +P+
Sbjct: 86 TPLLNSLILCGGATLLTVVCAVLAAYPLSRFRSRLNRPFLLTILFATSLPITAIMVPVYA 145
Query: 130 LYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSIT 189
L++++N+IDT+ G A LPF + + + GV KELEEA G + + + I
Sbjct: 146 LFVRVNMIDTMQGTIFFFAASQLPFAIWLMKNFMDGVPKELEEAAWTDGASSFQSLLRIV 205
Query: 190 LPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAA 249
LPL PG+A +F+FVM W FV +L L +PA + + G Y A
Sbjct: 206 LPLMGPGVAVVTVFSFVMMWGNFFVPFMLLLSPDQMPASV--SINDFFGNRGMVAYGQLA 263
Query: 250 AFIMILP---AMLFIFFARR 266
AF ++ +L++ +RR
Sbjct: 264 AFSIVYSTPVVLLYVLISRR 283
>pir||D82201 spermidine/putrescine ABC transporter, permease protein VC1426
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9655924|gb|AAF94583.1| (AE004221)
spermidine/putrescine ABC transporter, permease protein
[Vibrio cholerae]
Length = 256
Score = 96.7 bits (237), Expect = 3e-19
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 6/220 (2%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKN 74
++F+ V ++ +PIIV +F+ N + FT++W ++ +
Sbjct: 7 FSFMSLVYLFLYLPIIVLIANSFNE-----NKFGIKWGGFTTKWYHALMNNDSLMQAAWH 61
Query: 75 SIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKL 134
SI VAV + + L+G A+ RY FKGK + + + M P VMAI L+ L++ +
Sbjct: 62 SINVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVM 121
Query: 135 NLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLAL 194
+ +AH LPFVV+ + G D ++ EA G W K I LPLA
Sbjct: 122 GAKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAK 181
Query: 195 PGLAAAAMFTFVMSWNEVFVASILTLKN-RTLPAQILSIV 233
P +AA + +F +S ++V ++S +T LP +I S+V
Sbjct: 182 PAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMV 221
>pir||T46752 inner membrane protein malG [validated] - Thermococcus litoralis
>gi|2828822|gb|AAC38138.1| (AF012836) inner membrane
protein MalG [Thermococcus litoralis]
Length = 278
Score = 96.3 bits (236), Expect = 4e-19
Identities = 69/264 (26%), Positives = 122/264 (46%), Gaps = 1/264 (0%)
Query: 8 MLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILF-TL 66
+LK+I + L P I + +F+ + V S +V+ + TL
Sbjct: 5 VLKRILLIIGAILMAIICLFPFIWMIVVSFAEDPTFLGSPLVEYKSTLENYVRVLSDPTL 64
Query: 67 GAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIP 126
+ +KNSII+A L + + + A YA++R FKG+ I + ++ L MFP +
Sbjct: 65 HFPAYLKNSIIIASLVTLTTVSISSLAAYAVSRIEFKGRLLIPIFVLGLSMFPQISLVGY 124
Query: 127 LVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFK 186
L KL ++T + + A LP + I S F+ + K+L+EA M+ G +R
Sbjct: 125 LFKFIEKLGWVNTYQALYFPYVAWTLPLSLWILLSYFSQLPKDLDEAAMIDGASRIKTLT 184
Query: 187 SITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYK 246
+I LPL+ P L + A+ F+ ++NE A + T +R + + G P
Sbjct: 185 TIILPLSAPALFSTALLVFIAAFNEFMFALLFTTDHRARTVPVGIALFQGVHGEIPWGSV 244
Query: 247 FAAAFIMILPAMLFIFFARRYLVT 270
AA+ I +P ++ ++Y+V+
Sbjct: 245 MAASVISTIPLVIMALLFQKYIVS 268
>gi|11499198 spermidine/putrescine ABC transporter, permease protein (potC)
[Archaeoglobus fulgidus] >gi|7446692|pir||E69450
spermidine/putrescine ABC transporter, permease protein
(potC) homolog - Archaeoglobus fulgidus
>gi|2648949|gb|AAB89639.1| (AE000991)
spermidine/putrescine ABC transporter, permease protein
(potC) [Archaeoglobus fulgidus]
Length = 242
Score = 96.0 bits (235), Expect = 5e-19
Identities = 76/251 (30%), Positives = 118/251 (46%), Gaps = 25/251 (9%)
Query: 16 AFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNS 75
AF V A++ IPI++ +F FT + + +L S NS
Sbjct: 5 AFTIAVFAFLYIPIVIMIALSF------------YDDGFTLRNYQALLEDREIVSAFFNS 52
Query: 76 IIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVM--AIPLVVLYIK 133
I VA+L+ IIS +LG A YA R D I S + IP + A+ L++ +I
Sbjct: 53 IGVALLSTIISVILGTLAAYAFMR------DQISFSALFYPPIIIPEITEAVSLLLFFIV 106
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L V + HTA + FV +I S+ A + +E EEA + G + F+ +TLPL
Sbjct: 107 LGFPLGFYSVLIGHTAFNIAFVFVIVSARGANLRREFEEASYILGANEFQTFRKVTLPLL 166
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLKN--RTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
+PG+ AA++ F +SW+ F+ ++ T TLP I S A G +P A+
Sbjct: 167 MPGIIAASLIAFTLSWDN-FIKTVFTTGPGFETLPLIIWS--QAARGVVSPTINALASLM 223
Query: 252 IMILPAMLFIF 262
I+I + +I+
Sbjct: 224 IVISLLLSYIY 234
>pir||T03551 transmembrane maltose transport protein - Rhodobacter capsulatus
>gi|3128352|gb|AAC16204.1| (AF010496) transmembrane
maltose transport protein [Rhodobacter capsulatus]
Length = 276
Score = 95.6 bits (234), Expect = 6e-19
Identities = 61/259 (23%), Positives = 131/259 (50%), Gaps = 10/259 (3%)
Query: 18 IFTVVAW-----ILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKTILFTLGAWSG 71
+ T++AW + PI+ + + +F T+ D P KV+ + FT + + +
Sbjct: 12 LVTLLAWSIGLALFFPILWTVILSFKTEGDAIAAPLKVLTSPFTLESYGVVQERSNYFLH 71
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
NS+++++ + +++ L+ IPA +A+A + + +++ +M P + +P+ +++
Sbjct: 72 FWNSVVISLGSTLLALLVAIPAAWAMAFVPGPKTKDLLMWMLSTKMMPAVGVLVPIYLIF 131
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
L L+D+ +G+ + M LP V+ + + F + E+ EA + G T + P
Sbjct: 132 RDLGLLDSRIGLVVVLMLMNLPIVIWMLYTYFREIPGEILEAARMDGATLKDELIHVLTP 191
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKF-AAA 250
+A+PG+A+ + +++WNE F LT A + + +AG + Y K AA+
Sbjct: 192 MAVPGIASTLLLNVILAWNEAFWTLQLTTSK---AAPLTTFIAGYSSPEGLFYAKLSAAS 248
Query: 251 FIMILPAMLFIFFARRYLV 269
+ I P ++ +F+++ LV
Sbjct: 249 TLAIAPILILGWFSQKQLV 267
>gb|AAK41417.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 296
Score = 94.8 bits (232), Expect = 1e-18
Identities = 84/281 (29%), Positives = 134/281 (46%), Gaps = 24/281 (8%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVS-----TLYAFSTKADYYNPHKVIPTSFTSQWVKTI- 62
+KK + + ++++++ I+ + Y F T + N +I + + K I
Sbjct: 7 IKKYRLFKILRLAISYLVLIIMAAFSIFPLYYVFMTS--FSNAPNLISLAVSDLLPKHIY 64
Query: 63 ------LFTLGAWSG-----IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLS 111
LFT + G I+NS+I+A T IIS LL + GYA++R K +
Sbjct: 65 FTAYKYLFTTNLYGGSFPLWIRNSLILAGSTAIISVLLALITGYALSRLNVPAKKILATF 124
Query: 112 IVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELE 171
I + FP A+PL +L+ K +L++ +G+ LA+T F I + E
Sbjct: 125 IYIVTFFPYTASAVPLYLLFAKFHLLN-YIGLILAYTPGTSIFAAFIAKLSIDSIPPSYE 183
Query: 172 EAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKN-RTLPAQI- 229
E M+ GL+R+GAF I + LALP +A A+ F ++ + +A L N + A I
Sbjct: 184 EIAMIDGLSRFGAFLRIVMRLALPVVALTALLGFSGTYLDFALAYSFLLPNVKEWTATIG 243
Query: 230 LSIVAGAAGGA-APAYYKFAA-AFIMILPAMLFIFFARRYL 268
L +AG A APAY FAA A IM +P M ++R +
Sbjct: 244 LYYMAGLLNQASAPAYNIFAAGAVIMGIPLMALFIVSQRMM 284
>emb|CAA63862.1| (X94148) putative inner membrane protein [Bacillus licheniformis]
Length = 270
Score = 94.8 bits (232), Expect = 1e-18
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 4/204 (1%)
Query: 12 IAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSG 71
+ +A V ++ +P+ V L AFS D Y K P+ + +W ++ + G
Sbjct: 16 VCVWAAGLLVYLFLALPVFVIILSAFSP--DEYP--KFPPSGVSLRWFAGVISSSGWMES 71
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
I S ++ ++ ++ +LG A YA+AR F GK I+ I++ M P + + + L
Sbjct: 72 IWVSGMLLLVVTPLAVILGTVAAYALARLNFPGKQGIQAFILSPMMIPQIALGVSFLYLL 131
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
L + T G+A H ++LP+V+ A VD +LE A M G W F +TLP
Sbjct: 132 TMLGVNGTFAGLAAGHILISLPYVLRTVGVSMANVDPKLELASMNLGAGPWYTFFHVTLP 191
Query: 192 LALPGLAAAAMFTFVMSWNEVFVA 215
L PG+ A A+F V S+ EV ++
Sbjct: 192 LIKPGIIAGAVFAAVTSFGEVSIS 215
>emb|CAC11293.1| (AL445063) trehalose/maltose transporter, inner membrane protein
(MalG) related protein [Thermoplasma acidophilum]
Length = 247
Score = 94.8 bits (232), Expect = 1e-18
Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 20/248 (8%)
Query: 29 IIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAV-------- 80
+I++ T YY P +IP+ FT + +K+ A+SG + +I A
Sbjct: 1 MIIAFASPSQTLGAYYPP--LIPSKFTLENLKS------AFSGYSSILIAAFYKSLETAF 52
Query: 81 LTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTL 140
+ I+ LLG A Y ++R +K + I + M P +AIP+ +IK+ L D+
Sbjct: 53 IVASIAILLGFHAAYGLSRIPYKLSNLILGLLFFSTMIPSLTIAIPISATFIKIGLYDSA 112
Query: 141 LGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAA 200
LG+ALA + LP V + + V + LE V G T A I PLA+PG+ AA
Sbjct: 113 LGLALAQELVVLPLTVFLITGSLESVPRTLEYQARVDGATFIQALYRIIFPLAVPGVVAA 172
Query: 201 AMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLF 260
+ +++MSW+E A I++ + TLP IL + A G + A ++ +P ++
Sbjct: 173 FLLSWLMSWDEFTFAVIISPVHPTLP--ILIYLESTARG--DIFTGTVFALLVTIPVIIL 228
Query: 261 IFFARRYL 268
++L
Sbjct: 229 TIILSKFL 236
>sp|P40980|YOR2_CALSR HYPOTHETICAL 30.9 KD PROTEIN IN XYLR 5'REGION (ORF2)
>gi|632073|pir||S41786 probable sugar transport protein
2 - thermophilic bacterium RT8.B4
>gi|311187|gb|AAB42042.1| (L18965) putative membrane
bound sugar transport protein; ORF2
[Caldicellulosiruptor sp. Rt8B.4]
Length = 275
Score = 94.4 bits (231), Expect = 1e-18
Identities = 72/267 (26%), Positives = 125/267 (45%), Gaps = 11/267 (4%)
Query: 9 LKKIAFYAFIFTVVAWILI---PIIVSTLYAFSTKADYYNPHK-VIPTSFTSQWVKTILF 64
+K+ + FIF V W LI P + +F T+++ + + IP T T+L
Sbjct: 4 IKETKKWYFIFLAV-WTLIADVPFLFMLFTSFKTQSELLSGNTWQIPRQPTIGNFSTVLE 62
Query: 65 TLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMA 124
++ +KNS+I +++++ ++ A +A +R+ F + + I+A PI V
Sbjct: 63 G-NFFTYLKNSVIAVSISVVLILIISSMAAFAFSRFKFALNNLLYSLIIAGMAIPIHVTL 121
Query: 125 IPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGA 184
IP+ VL K+ L DT+ + + A++LP + I + + ELEEA + G + +
Sbjct: 122 IPIYVLTNKIKLYDTVFALIGPYVALSLPMSIFILTEFMREIPLELEEAAKIDGCSMFRL 181
Query: 185 FKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLK--NRTLPAQILSIVAGAAGGAAP 242
+ I LPL+ P L ++ WNE A +LT RTLP I A G P
Sbjct: 182 YSDILLPLSAPALITVGIYNGTYLWNEFVFALVLTSSPTRRTLPLGIWDFQA-RYGSDIP 240
Query: 243 AYYKFAAAFIMILPAMLFIFFARRYLV 269
A F + +LP ++ F + ++
Sbjct: 241 AIMAFLT--LSLLPMLIAYIFGQDKII 265
>gb|AAC45768.1| (AF018073) sorbitol/mannitol transport inner membrane protein; SmoG
[Rhodobacter sphaeroides]
Length = 276
Score = 94.4 bits (231), Expect = 1e-18
Identities = 64/259 (24%), Positives = 126/259 (47%), Gaps = 10/259 (3%)
Query: 18 IFTVVAW-----ILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKTILFTLGAWSG 71
I T+ AW I PI+ + L +F ++ D P ++ + +T Q +
Sbjct: 12 IVTLAAWTIAFLIFFPILWTVLMSFKSEGDAIKAPFAMLFSDWTLQSYADVQERSNYARH 71
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
NS+++++ + +++ + IPA +A+A + + + +++ +M P + IPL +++
Sbjct: 72 FMNSVVISLGSTLVALAIAIPAAWAMAFVPGRRTKDVLMWMLSTKMMPAVGVLIPLYLIF 131
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
L+DT +G+ + T + LP VV + + F + E+ EA + G T I P
Sbjct: 132 RDTGLLDTRIGLVIVLTLINLPIVVWMLYTYFKEIPGEILEAARMDGATLGSEILYILTP 191
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
+A+PG+A+ + +++WNE F LT A + +A + Y K +AA
Sbjct: 192 MAVPGIASTLLLNVILAWNEAFWTLQLTTSR---AAPLTQFIASYSSPEGLFYAKLSAAS 248
Query: 252 IM-ILPAMLFIFFARRYLV 269
M I P ++ +F+++ LV
Sbjct: 249 TMAIAPILILGWFSQKQLV 267
>pir||T45007 probable ABC-transport protein [imported] - Haloferax volcanii
>gi|4775469|emb|CAB42543.1| (AJ238878) putative
ABC-transporter, subunit [Haloferax volcanii]
Length = 269
Score = 93.6 bits (229), Expect = 2e-18
Identities = 64/198 (32%), Positives = 101/198 (50%), Gaps = 14/198 (7%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI- 132
NS++ A L+ +++ G+P Y ++R F+G+D I L++V L + PV++ L++ +
Sbjct: 67 NSVVAATLSTLVAVAFGVPLAYWLSRTSFRGRDVI-LALVMLPLVLPPVVSGMLLLRLVG 125
Query: 133 --------KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGA 184
+ L +L GV LA T +A PF+V+ + F GVD++LE A G R G+
Sbjct: 126 PAGLGQLTSVPLTRSLFGVVLAQTYVASPFLVVTAKTAFDGVDRQLEAAARSLGEDRVGS 185
Query: 185 FKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI----LSIVAGAAGGA 240
+ +TLPLA G+ A TF + E +L RTLP QI LS AA
Sbjct: 186 VRRVTLPLAKQGILAGVTLTFARAIGEFGATLMLAYYPRTLPVQIWVSYLSTGLDAAFPV 245
Query: 241 APAYYKFAAAFIMILPAM 258
A A I+++ A+
Sbjct: 246 ALVLVGIAVGAILLVHAL 263
>gi|10955067 agtD [Agrobacterium tumefaciens]
>gi|6689867|gb|AAF23880.1|AF117204_5 (AF242881) agtD
[Agrobacterium tumefaciens]
Length = 281
Score = 93.6 bits (229), Expect = 2e-18
Identities = 55/214 (25%), Positives = 104/214 (47%), Gaps = 5/214 (2%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSI 76
++ + +IL+P+++ +FS+ P P ++ +W +TIL + S+
Sbjct: 14 YLLLISTFILLPLLILFPVSFSSADVLIFP----PPGYSLRWFETILGSPEWMGAALTSL 69
Query: 77 IVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNL 136
+ V T +S LL A R F ++ ++ + P V A+ + + K+ L
Sbjct: 70 RIGVATCALSLLLATLAVIGFGRGRFLFREALEAVVQFPLSVPAVVFALGAYLTFSKVGL 129
Query: 137 IDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPG 196
+DT G+ +AHT + P V L+ S+ ++ +D L A G W F++I PL LPG
Sbjct: 130 VDTEAGIVIAHTVLIFPVVFLVASATYSSIDPSLSLAASSLGANAWQTFRTIVFPLLLPG 189
Query: 197 LAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQI 229
+A + ++S++E + L+ L +TLP ++
Sbjct: 190 VAIGGLLAMLLSFDESVASIFLSDLSVKTLPRKL 223
>sp|O31520|YESQ_BACSU PROBABLE ABC TRANSPORTER PERMEASE PROTEIN YESQ
>gi|7442793|pir||H69796 lactose permease homolog yesQ -
Bacillus subtilis >gi|2633012|emb|CAB12518.1| (Z99107)
similar to lactose permease [Bacillus subtilis]
Length = 296
Score = 93.2 bits (228), Expect = 3e-18
Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 19/271 (7%)
Query: 10 KKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNP-HKVIPTSFT-SQWVKTILFTLG 67
K+I F+ F T+ +L P+I + +F A + H +IP F S + +
Sbjct: 25 KRILFHVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAE------- 77
Query: 68 AWSGI---------KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMF 118
W GI KNS I+ L+ I + + Y AR FKGK ++ M
Sbjct: 78 GWKGIAGQPFLTFIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLML 137
Query: 119 PIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFG 178
P V+ IP +++ KL+ +++ + + F + + + +EL+EA + G
Sbjct: 138 PHEVLMIPQYIMFAKLDWLNSFKPIVVPQF-FGHAFFIFLMIQFIRTIPEELDEAARIDG 196
Query: 179 LTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAG 238
R+ F I LPL P LA +A+F+F W E+ + K P + +
Sbjct: 197 CGRFACFWRIILPLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTE 256
Query: 239 GAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
A+ FA + + +LP +L F ++Y+V
Sbjct: 257 SASNWGAMFAMSAVSLLPVILVFFLFQKYIV 287
>emb|CAC11275.1| (AL445063) inner membrane protein of trehalose/maltose (MalG)
related protein [Thermoplasma acidophilum]
Length = 294
Score = 93.2 bits (228), Expect = 3e-18
Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 8/272 (2%)
Query: 4 KTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPH--KVIPTSFTSQWVKT 61
K ++KKI + + V + + PI L + S+ ++P F+
Sbjct: 18 KRISLIKKILSHIILIIVGIYSIFPIYYVVLTSLSSVNSIAETSLSDLLPKFFSLSNYYL 77
Query: 62 ILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
ILF ++ + N++I + I I AG +AR+ GK I ++ L MFP
Sbjct: 78 ILFKYPFFTWLGNTLIFCTASTAIGIAFAIIAGIGMARFNIPGKKAILYMMLILTMFPFV 137
Query: 122 VMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
VM IPL ++ L+LIDT G+ LA+T AL + + + + K+ EEA + GLT+
Sbjct: 138 VMVIPLYFMFATLHLIDTYQGLILAYTGGALIYSSWLIMNYVNSLPKDYEEAAQLDGLTQ 197
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVAS--ILTLKNRTLPAQILSIVAGAAGG 239
A I +P++ P + A + F+ + + +A I T TL + + + G
Sbjct: 198 SQALFRILVPMSRPVIIFAVLVAFMGPYTDYALAGQFITTPSMYTL---AIGLYYTSTGT 254
Query: 240 AAPAYYKFAA-AFIMILPAMLFIFFARRYLVT 270
Y +AA + +M LP + F ++YLV+
Sbjct: 255 VVMNYNVYAAFSVLMGLPLFILFFVFQKYLVS 286
>pir||S75051 lactose transport system permease protein lacG - Synechocystis sp.
(strain PCC 6803) >gi|1652996|dbj|BAA17913.1| (D90910)
lactose transport system permease protein LacG
[Synechocystis sp.]
Length = 270
Score = 92.8 bits (227), Expect = 4e-18
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 11/200 (5%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS++V+ +T+ ++ A Y +AR F G+D +IVA M P ++ IPL +L +
Sbjct: 68 NSVVVSSITVALNLFFCALAAYPLARLNFVGRDMTLAAIVATLMIPFQLIMIPLYILAVN 127
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L L ++ +G+ A A F + + F GV KELEEAG + G G + I +P
Sbjct: 128 LGLRNSYVGIIFPSLASA--FGIFLLRQAFQGVPKELEEAGRIDGCRELGIWWHIMIPAI 185
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKF----AA 249
P L A+F F+ +W++ F+ ++ L + ++ G A ++ + + AA
Sbjct: 186 RPALVTLAIFVFIGAWSD-FLWPLIVLDQ----PEYYTLPLGVAQLSSALDFDWRLIAAA 240
Query: 250 AFIMILPAMLFIFFARRYLV 269
+ I I P ++ F +RY++
Sbjct: 241 SVIAIAPIIVLFLFVQRYII 260
>dbj|BAB04965.1| (AP001511) unknown conserved protein [Bacillus halodurans]
Length = 273
Score = 92.8 bits (227), Expect = 4e-18
Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 5/259 (1%)
Query: 13 AFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGI 72
+FY F+ V ++ P I L + + + T Q + ++ +
Sbjct: 8 SFYFFLIVFVFLVMFPFIWVFLTSIKPPREIFASFAWFSAEPTFQSYVNAVNNRPLFTYM 67
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
NS +++ LT +I+ A YA+ R KGK I +++A MFP + P+
Sbjct: 68 MNSFVISSLTTLIAIACASLAAYALTRLPIKGKGLILGTVLAASMFPQIAIITPIYSFIT 127
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
L L ++ G+ + + ++LP + I ++ F + ELEE+ + G T + F+ I PL
Sbjct: 128 DLGLRNSYFGLVIPYITISLPLAIWILATFFKKIPFELEESAKLDGATPFQTFRKIIFPL 187
Query: 193 ALPGLAAAAMFTFVMSWNE-VFVASILTL-KNRTLPAQILSIVAGAAGGAAPAYYKFAAA 250
A PG+ A+ F+ +WNE +F +I T + RT+P + + + P AA
Sbjct: 188 AAPGVFTTAILVFIAAWNEYLFALTINTADRLRTVP---VGLSLYESQYTIPWGDITAAT 244
Query: 251 FIMILPAMLFIFFARRYLV 269
I+ +P ++ + +R +V
Sbjct: 245 VIVTVPIVIIVLLFQRRIV 263
>gb|AAC04470.1| (AF007800) MtlG [Pseudomonas fluorescens]
Length = 276
Score = 92.4 bits (226), Expect = 5e-18
Identities = 63/263 (23%), Positives = 127/263 (47%), Gaps = 6/263 (2%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYY-NPHKVIPTSFTSQWVKTILFTLG 67
L+ + + + I PI L +F T+ D + P + I T ++ I
Sbjct: 9 LQSLLLGTLAWAIAILIFFPIFWMVLTSFKTEIDAFATPPQFIFTPTLENYLH-INERSN 67
Query: 68 AWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPL 127
+S NS++++ + L+ +PA Y++A Y K + L +++ +M P + +P+
Sbjct: 68 YFSYAWNSVLISFSATALCLLISVPAAYSMAFYETKRTKSTLLWMLSTKMLPPVGVLMPI 127
Query: 128 VVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKS 187
+L L+DT + + + +T + LP VV + + F + K++ EA + G T W
Sbjct: 128 YLLAKSFGLLDTRIALIIIYTLINLPIVVWMVYTYFKDIPKDILEAARLDGATLWQEMVR 187
Query: 188 ITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKF 247
+ LP+A GLA+ + + ++ WNE F + LT N A + +++A + + K
Sbjct: 188 VLLPIAKGGLASTVLLSLILCWNEAFWSLNLTSSN---AAPLTALIASYSSPEGLFWAKL 244
Query: 248 AA-AFIMILPAMLFIFFARRYLV 269
+A + + P ++F + +++ LV
Sbjct: 245 SAVSTLACAPILIFGWISQKQLV 267
>pir||D71123 probable sugar transport system permease protein - Pyrococcus
horikoshii >gi|3257163|dbj|BAA29846.1| (AP000003) 279aa
long hypothetical sugar transport system permease
protein [Pyrococcus horikoshii]
Length = 279
Score = 92.4 bits (226), Expect = 5e-18
Identities = 77/268 (28%), Positives = 127/268 (46%), Gaps = 25/268 (9%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFS--TKADYYNPHKVIPTSFTSQW 58
++EKT L + Y+ + L+P I S + +F +A Y P + IP FT +
Sbjct: 2 ISEKTMKKLWLLLTYSVLIIFALVYLMPFIRSIVASFMEWAQASKYPP-EWIPHPFTLEN 60
Query: 59 VKTI--LFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALR 116
+ + L W I N+ + A +T+ + + AGYA AR F G+D I S+++L
Sbjct: 61 YRKLFRLELFPRW--ILNTSLYAGITVTGNIIFSSMAGYAFARLKFPGRDVIFSSLLSLL 118
Query: 117 MFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMV 176
M P+ V +P ++ KL L+D + G++L ++ + + F + E+ EA +
Sbjct: 119 MIPMFVTLVPNYIIIYKLGLVDNIFGLSL--LSLVSVSSIFLMRQYFTSLPNEIFEAARL 176
Query: 177 FGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLK---NRTLP------- 226
G +F I LPLA P L A A++ F+ +WN F+ ++ L+ N TLP
Sbjct: 177 DGCGPIKSFFYIALPLAKPALGAVAVYQFLGAWN-AFIGPLIFLRSPENFTLPVGLSFAF 235
Query: 227 -----AQILSIVAGAAGGAAPAYYKFAA 249
+ I+AG+ AAP F A
Sbjct: 236 QRSMWTEYTPIIAGSIVAAAPTILLFVA 263
>pir||A75504 maltose ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458258|gb|AAF10143.1|AE001914_5
(AE001914) maltose ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 458
Score = 91.7 bits (224), Expect = 9e-18
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 4/200 (2%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
++N++ V+ +T +++ LL AGYA+AR F G+ + L + ++MFP+ + + + L
Sbjct: 251 VRNTLFVSTVTGLLAILLSTTAGYAMARLRFPGRFQMLLFFIFIQMFPVFLALVAIYTLL 310
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
L L++T G+ LA++ A+ F I + + LEEA MV G TRW F+ + LP
Sbjct: 311 SALGLVNTFTGLILAYSGGAIAFNTWIYKGYVESLPESLEEAAMVDGATRWQTFRRVVLP 370
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILT--LKNRTLPAQILSIVAGAAGGAAPAYYKFAA 249
L+ L + F+ ++ E +AS+L ++ T+ + S +G + AA
Sbjct: 371 LSGSMLVFIFLNQFIGTYAEFILASVLLTGVEQWTVGVMLRSFTSGQFSTKWGVF--AAA 428
Query: 250 AFIMILPAMLFIFFARRYLV 269
A + LP + + + Y V
Sbjct: 429 ATLGALPIVALFYSFQNYFV 448
>emb|CAB42552.1| (Y16753) sugar permease [Thermus thermophilus]
Length = 169
Score = 91.3 bits (223), Expect = 1e-17
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 18/159 (11%)
Query: 125 IPLVVLYI------------KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEE 172
IP+ ++YI ++ L+ + G+ +TA +P + I FA + KELEE
Sbjct: 5 IPIYIMYIYVQNWVRSALGLEVRLVGSYGGLVFTYTAFFVPLSIWILRGFFASIPKELEE 64
Query: 173 AGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLK-NRTLPAQILS 231
A MV G T + AF + LPLALPGLAA A++ F+ +W+E+ A +LT + T+P I +
Sbjct: 65 AAMVDGATPFQAFHRVILPLALPGLAATAVYIFLTAWDELLFAQVLTTEATATVPVGIRN 124
Query: 232 IVAGAAGGAAPAY-YKFAAAFIMILPAMLFIFFARRYLV 269
V G Y AAA + LP ++ FF +R L+
Sbjct: 125 FV----GNYQNRYDLVMAAATVATLPVLVLFFFVQRQLI 159
>dbj|BAB04838.1| (AP001511) lactose transport system (permease) [Bacillus
halodurans]
Length = 281
Score = 90.9 bits (222), Expect = 2e-17
Identities = 64/274 (23%), Positives = 119/274 (43%), Gaps = 28/274 (10%)
Query: 12 IAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNP-HKVIPTSFTSQWVKTILFTLGAWS 70
+ +Y F+ ++ PI+ + ++ ++ +IP+ F W W+
Sbjct: 11 VIYYGFVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFV--WSNYP----DGWA 64
Query: 71 GI---------KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
G KNS I+ +I + L Y AR FK K + ++A M P+
Sbjct: 65 GFGRTGFDIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQ 124
Query: 122 VMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
+ IP +L+ L ++T + + PF + + G+ +EL+EA ++ G +
Sbjct: 125 ITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCST 184
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSI------VAG 235
+G F + LPL P L A+F F+ +W++ F+A ++ L + L + +G
Sbjct: 185 FGVFWRVILPLLKPALVTVAIFAFMWTWDD-FLAPLIYLNKTDIQTVALGLRNFMDAESG 243
Query: 236 AAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
+ GA A + + +LP + F +RYLV
Sbjct: 244 TSWGAL-----LAMSTLSLLPQFIIFLFFQRYLV 272
>sp|O58967|YC16_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN PH1216
>gi|7442814|pir||B71065 hypothetical protein PH1216 -
Pyrococcus horikoshii >gi|3257633|dbj|BAA30316.1|
(AP000005) 275aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 275
Score = 90.1 bits (220), Expect = 3e-17
Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 21/269 (7%)
Query: 11 KIAFYAFIFTVVAWILIPI----IVSTL----YAFSTKADYYNPHKVIPTSFTSQWVKTI 62
+ Y + + AW L+PI ST A +T + P P + +K
Sbjct: 8 RFLLYIVLIFLAAWYLLPIWSAITTSTKTGEQVALTTPVQFVFPPTFDPYREAFRELKR- 66
Query: 63 LFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMF-PIP 121
I NS+I I S +LG AG+ IA+ V L++++ +F P
Sbjct: 67 --------PILNSLIFTTFATIFSTILGSIAGFTIAKLVRGRVSRQLLALISFGIFLPYQ 118
Query: 122 VMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
+ IPLV + L L + +LG+ L HTA +P L+ ++ + + EL EA + G
Sbjct: 119 SILIPLVKIISSLGLYNRILGLILTHTAYGIPITTLLFTNYYYEIPDELVEAAKIDGADP 178
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGGA 240
W + + LPL+ ++ F WN+ +LT +PA + L+ + G+
Sbjct: 179 WKIYTKVILPLSKAPFVVTGIYQFTNIWNDYLFGVVLTRGEEAMPATVKLANLKGSF--V 236
Query: 241 APAYYKFAAAFIMILPAMLFIFFARRYLV 269
A + A A I+ LP +L + +YL+
Sbjct: 237 ANWNIQMAGALIVALPTLLIMIALGKYLI 265
>gb|AAF70305.1|AF259975_1 (AF259975) MalG [Vibrio cholerae]
Length = 296
Score = 89.3 bits (218), Expect = 5e-17
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 35/282 (12%)
Query: 13 AFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTIL--------- 63
A +A ++ +A I+ P+++ + A S + + +IP + + K L
Sbjct: 15 ATHAALWVFLALIIFPLLM--IVAISFREGNFATGSLIPDRPSLEHWKLALGIAVQNADG 72
Query: 64 ------FTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRM 117
F + W + NS+ VA +T ++ L + YA AR FKGK+TI +++ +M
Sbjct: 73 SVTPPPFPVMTW--LWNSVKVAGITSVLIVALSTTSAYAFARMRFKGKETILKAMMIFQM 130
Query: 118 FPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFV------VLITSSIFAGVDKELE 171
FP + + L L+ KL LG+ H + P++ V F +D+ LE
Sbjct: 131 FPAVLALVALYALFDKLGQYIPFLGLN-THGGLIFPYLGGIALHVWTIKGYFETIDRSLE 189
Query: 172 EAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILS 231
EA + G T W AF+ + LPL++P LA + +F+ EV VAS+L +
Sbjct: 190 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIGVVGEVPVASLL-----LSDVNSYT 244
Query: 232 IVAGAAGGAAPAYYKF----AAAFIMILPAMLFIFFARRYLV 269
+ G P Y + AAA + LP + A+R+LV
Sbjct: 245 LAVGMQQYLYPQNYLWGDFAAAAVLSALPITIVFLLAQRWLV 286
>sp|P45169|POTC_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTC
Length = 257
Score = 88.9 bits (217), Expect = 6e-17
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 9/247 (3%)
Query: 16 AFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNS 75
AF+F V A++ IPII+ +F+ D Y + F+ W + + +S
Sbjct: 9 AFMFVVYAYLYIPIIILVTNSFNK--DRYG---LSWKGFSWNWYERLFNNDTLIQAAIHS 63
Query: 76 IIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLN 135
+ +A ++ ++G A+ RY F+GK + + + M P VMA+ L+ L++ +
Sbjct: 64 VTIAFFAATLATIVGGLTAIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMVVG 123
Query: 136 LIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALP 195
+ + LAH LP+V + S G D + EA G + + I LPLALP
Sbjct: 124 ISLGFWSLLLAHVTFCLPYVTVTIFSRLNGFDSRMLEAAKDLGASEVTILRKIILPLALP 183
Query: 196 GLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMI 254
+ + + +F +S ++V V+S ++ + LP +I S+V G P A I++
Sbjct: 184 AVVSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLV---KTGVTPEVNALATIMIVL 240
Query: 255 LPAMLFI 261
A++ +
Sbjct: 241 SLALVVL 247
>pir||F83248 probable permease of ABC sugar transporter PA3188 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9949306|gb|AAG06576.1|AE004742_12 (AE004742)
probable permease of ABC sugar transporter [Pseudomonas
aeruginosa]
Length = 281
Score = 88.9 bits (217), Expect = 6e-17
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 13/270 (4%)
Query: 6 AFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILF 64
+F + ++A + ++ A L+P++V L +F T D + + +P +FT ++
Sbjct: 9 SFSVSRLAVHLTLWGACALYLVPLLVMLLTSFKTPDDIRTGNLLSLPDTFT------VIG 62
Query: 65 TLGAWSGIK----NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPI 120
L AW + NS+++ V ++IS +G GY ++ + F+G +++ P
Sbjct: 63 WLKAWDSVGAFFWNSVLITVPGVLISTFIGALNGYVLSMWRFRGSQLFFGALLFGCFLPF 122
Query: 121 PVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLT 180
V+ +P+ KL L +T G+ L H L F L + F + L +A + G
Sbjct: 123 QVILLPMSFTLGKLGLANTTSGLVLVHVIYGLAFTTLFFRNYFVAIPDALVKAARLDGAG 182
Query: 181 RWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGG 239
+ F I LP++ P + ++ F WN+ F+ ++ + P + L+ + G
Sbjct: 183 FFTIFLRILLPMSTPIVMVCLIWQFTQIWND-FLFGVVFASGDSQPITVALNNLVNITTG 241
Query: 240 AAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
AAA I LP ++ A +Y V
Sbjct: 242 VKEYNVDMAAAMIAALPTLVVYVLAGKYFV 271
>emb|CAB59597.1| (AL132662) probable sugar transport inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 299
Score = 88.2 bits (215), Expect = 1e-16
Identities = 50/139 (35%), Positives = 75/139 (52%), Gaps = 2/139 (1%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+IV+ +T+ + + G AGYA AR F G + ++A P + IP ++ K
Sbjct: 97 NSLIVSAVTVAANLVFGSLAGYAFARMRFAGSRVLMGLMLATMAVPFQLTMIPTFLVMKK 156
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L LIDTL AL ++ PF V + F + +ELEEA + G +R I LPL+
Sbjct: 157 LGLIDTL--GALIVPSLVTPFAVFLLRQFFLSLPRELEEAAWIDGCSRLRVLWRIVLPLS 214
Query: 194 LPGLAAAAMFTFVMSWNEV 212
P LA A+ TF+ +WN++
Sbjct: 215 RPALATVAVLTFLTTWNDL 233
>pir||F75203 anion transport system permease protein PAB0102 - Pyrococcus abyssi
(strain Orsay) >gi|5457586|emb|CAB49077.1| (AJ248283)
ANION TRANSPORT SYSTEM PERMEASE PROTEIN [Pyrococcus
abyssi]
Length = 248
Score = 87.8 bits (214), Expect = 1e-16
Identities = 63/206 (30%), Positives = 102/206 (48%), Gaps = 12/206 (5%)
Query: 33 TLYAFSTKADYYNPHKVIP--TSFTSQ------WVKTILFTLGAWSGIKNSIIVAVLTII 84
TLY F+ + + +P FT Q VKTI L ++NS++ A T +
Sbjct: 7 TLYLFAALGSFLIVYIALPIIVIFTKQALDFRMLVKTIHDPL-VIEALRNSLLTATATAL 65
Query: 85 ISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVA 144
IS L G+P GY +AR F+GK ++ I + P V+ I L+V + ++D+ G+
Sbjct: 66 ISLLFGVPLGYVLARKDFRGKSLVQAIIDVPIVIPHSVVGIMLLVTFSNA-ILDSYKGII 124
Query: 145 LAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFT 204
A ++ PF + F VD++LE G ++ F SI+LP+ALP +A+ A+
Sbjct: 125 AAMLFVSAPFAINSARDGFLAVDEKLEHVARTLGASKLRTFFSISLPIALPSIASGAIMA 184
Query: 205 FVMSWNEVFVASILTLKNRTLPAQIL 230
+ +EV I+ +T AQ+L
Sbjct: 185 WARGISEVGAILIVAYYPKT--AQVL 208
>pir||H71236 probable transport system protein - Pyrococcus horikoshii
>gi|3256540|dbj|BAA29223.1| (AP000001) 248aa long
hypothetical transport system protein [Pyrococcus
horikoshii]
Length = 248
Score = 87.0 bits (212), Expect = 2e-16
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 34 LYAFSTKADYYNPHKVIP--TSFTSQ------WVKTILFTLGAWSGIKNSIIVAVLTIII 85
LY F+ + + V+P T F Q VKT+ L ++NS++ A T +I
Sbjct: 8 LYFFAALGSFLVVYIVLPIVTIFAKQALDFEMLVKTVHDPL-VLEALRNSLLTATATALI 66
Query: 86 SFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVAL 145
S G+P GY +AR F+GK+ ++ I + P V+ I L+V + ++D+ G+
Sbjct: 67 SLFFGVPLGYILARKDFRGKNFVQAIIDVPVVIPHSVVGIMLLVTFSNA-ILDSYKGIIA 125
Query: 146 AHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTF 205
A ++ PF + F VD++LE G +R F SI+LP+ALP +A+ + +
Sbjct: 126 AMLFVSAPFAINSARDGFLAVDEKLEHVARTLGASRIRTFFSISLPMALPSIASGGIMAW 185
Query: 206 VMSWNEVFVASILTLKNRTLPAQIL 230
S +EV I+ +T AQIL
Sbjct: 186 ARSMSEVGAILIVAYYPKT--AQIL 208
>pir||C82557 ABC transporter sugar permease XF2446 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107639|gb|AAF85245.1|AE004053_8 (AE004053) ABC
transporter sugar permease [Xylella fastidiosa]
Length = 278
Score = 87.0 bits (212), Expect = 2e-16
Identities = 63/253 (24%), Positives = 115/253 (44%), Gaps = 4/253 (1%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSI 76
F+F +V+ + +VS + +A + P P+ T + + +G NS+
Sbjct: 20 FMFALVSLAPLLWMVSASLMPAGEASRFPP-PFFPSVVTFANYRELFARVGMGRYFVNSL 78
Query: 77 IVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNL 136
+V++ S L AGYA A+ F G++ + ++ + P V +PL +L L+L
Sbjct: 79 LVSLSITFGSVLFNTMAGYAFAKLRFAGRERVFQLLLTALVIPAQVAMLPLFLLMKHLHL 138
Query: 137 IDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPG 196
+D+ GV + A+A F + + G+ +L EA + G + F I LP+ P
Sbjct: 139 VDSFAGVIM--PALATVFGIFLVRQYVRGIPNDLIEAARIDGASEMRIFFQIVLPMLKPV 196
Query: 197 LAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILP 256
L FTF+ SWN+ F+ ++ L ++ +++ A A A A + +LP
Sbjct: 197 LVTLITFTFMASWND-FMWPLIVLTDQAHYTLPVTLAALAREHVMDIEMMMAGAVVTVLP 255
Query: 257 AMLFIFFARRYLV 269
+L +RY +
Sbjct: 256 VLLLFMLLQRYYI 268
>dbj|BAB07566.1| (AP001520) ABC transporter (permease) [Bacillus halodurans]
Length = 273
Score = 87.0 bits (212), Expect = 2e-16
Identities = 51/197 (25%), Positives = 94/197 (46%), Gaps = 4/197 (2%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
N++ + + I+S LLG GY ++++ FKG D I +I+ P + IPL+ +
Sbjct: 70 NTLYLVIPATILSALLGSLNGYVLSKWKFKGADWIFTAILFGMFIPYQSILIPLIQFLRE 129
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
+NL +T+ G+ L H +P L+ + +A + KE+ E+ V G + ++ I PL+
Sbjct: 130 VNLYNTIPGLILVHVVYGIPITTLMFRNFYANIPKEMLESAQVDGAGFFRIYRHIMFPLS 189
Query: 194 LPGLAAAAMFTFVMSWNE-VFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFI 252
+ G ++ F WNE +F SI T + + + ++ + + A A +
Sbjct: 190 ITGFVVVGIWQFTNIWNEFLFAVSITTTSQQPVMVALQNL---SGSQIVQWNVQMAGALL 246
Query: 253 MILPAMLFIFFARRYLV 269
LP +L +Y V
Sbjct: 247 AALPTLLVYIILGKYFV 263
>gb|AAK42959.1| ABC transporter, permease (glucose) [Sulfolobus solfataricus]
Length = 287
Score = 86.6 bits (211), Expect = 3e-16
Identities = 70/279 (25%), Positives = 123/279 (43%), Gaps = 16/279 (5%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWV 59
M++K ++K Y + V LIP+ + F + + + P V PT T +
Sbjct: 1 MDKKMRPVIKASLHYLALAIVSVIWLIPVYAMLINGFKSNFEVLSTPVLVPPTKITFEAY 60
Query: 60 KTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAI--ARYVFKGKDT----IKLSIV 113
++L +L + NS+I+ + T IS LG Y Y F + + S++
Sbjct: 61 VSVLLSLA--KPLINSLIIVIPTSFISAFLGAMGAYFFYTLSYSFSRASSAISDVLFSLI 118
Query: 114 ALRMF-PIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEE 172
+L F P +PL L + + L+D+ +G+ A +P L+ S + + + L E
Sbjct: 119 SLATFIPQEATLLPLTRLIVSMGLLDSYIGIIFALLIFYIPTGALLMSMFISVIPRSLIE 178
Query: 173 AGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSI 232
A + G F I PL++PG + +F + +WN F+ +L T ++ SI
Sbjct: 179 AAKMDGTGDLKIFMKIVFPLSMPGFISTLIFIIIQAWNNFFIPLVLV---TTPGMKLTSI 235
Query: 233 VAGAAGGAAPAYYK--FAAAFI-MILPAMLFIFFARRYL 268
+ GA Y FAA + I+P +F+F R ++
Sbjct: 236 AVLSYSGAYGTLYNDTFAAGMVASIIPLAIFVFLGRYFI 274
>pir||F72379 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4980936|gb|AAD35515.1|AE001721_14
(AE001721) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 271
Score = 86.6 bits (211), Expect = 3e-16
Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 6/264 (2%)
Query: 8 MLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKTILFTL 66
ML K + FI ++ ++P+ + + +F ++ Y+ P + P + + ++
Sbjct: 1 MLTKTIKWIFIVFMLVVFMLPVFYAVVSSFKPMSEIYSYPPTIFPKKPSLEGYINVIKEY 60
Query: 67 GAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIP 126
+ ++N++ VA + +I+ L+ + GY +A+ F G + V+ +P
Sbjct: 61 DLLTYLRNTLFVATVATVITVLVSVMTGYGLAKGKFWGIRPVNSMFTMTMFVSAQVIMVP 120
Query: 127 LVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFK 186
L V+ L LI++L G+ + A+ P + + + EL E+ + G W F
Sbjct: 121 LFVVIRSLGLINSLWGLIIP--AVYTPTGMFMAVQYMKDIPDELLESAKIDGANEWQIFW 178
Query: 187 SITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTL-PAQILSIVAGAAGGAAPAYY 245
I PL+ P +AA A+F+F WN+ FV +L + R L Q+ G A
Sbjct: 179 RIVFPLSKPLVAALAIFSFTWRWND-FVLPLLVVNRRNLYTLQLALATIQEEYGGAEWNT 237
Query: 246 KFAAAFIMILPAM-LFIFFARRYL 268
A + + I+P + +F+ F R ++
Sbjct: 238 ILAFSTLTIIPTLIIFLLFQRLFM 261
>pir||T36914 probable integral membrane sugar transport protein - Streptomyces
coelicolor >gi|5420009|emb|CAB46401.1| (AL096743)
putative integral membrane sugar transport protein
[Streptomyces coelicolor A3(2)]
Length = 292
Score = 86.6 bits (211), Expect = 3e-16
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 12/258 (4%)
Query: 21 VVAWIL-----IPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGA---WSGI 72
+VAW++ +PI L +F +++D S T + G W +
Sbjct: 29 LVAWLVGIVFFLPIAWMALTSFHSESDAATNPPSFAASLTLDGYREFFGAGGGASPWPAL 88
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
NS + ++ + + +L +PA YA++ K + ++ +M P+ +P+ +
Sbjct: 89 VNSAVASIASTLFVLVLALPAAYALSIRPVKKWTDVLFFFLSTKMLPVVAGLLPIYLFAK 148
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
+++D + + + +T+M LP V + S A V + EA V G + P+
Sbjct: 149 NTDMLDNIWLLVILYTSMNLPIAVWMMQSFLAEVPVAIIEAARVDGAKLPTILVRVVAPI 208
Query: 193 ALPGLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
ALPG+AA ++ F+ SWNE+ A +LT + T P + + A AA+
Sbjct: 209 ALPGIAATSLICFIFSWNELLFARVLTGVVAETAPVFLTGFITSQGLFLAKV---CAASL 265
Query: 252 IMILPAMLFIFFARRYLV 269
++ LP + F A+ LV
Sbjct: 266 VISLPVLAAGFAAQDKLV 283
>dbj|BAB06443.1| (AP001516) lactose transport system (permease) [Bacillus
halodurans]
Length = 272
Score = 86.6 bits (211), Expect = 3e-16
Identities = 73/269 (27%), Positives = 124/269 (45%), Gaps = 17/269 (6%)
Query: 11 KIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWS 70
K AF +V ++I I + + + + K+ +++P S + ++T+ T+ S
Sbjct: 2 KRAFIYLFLSVSSFICIFPFLWMVVSMTNKSIDVTRGRLLPGSHLFENIRTLFETVDIVS 61
Query: 71 GIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVL 130
+ NS I+A++T ++ L+ AGY Y GKD + ++ M P + IPL L
Sbjct: 62 ALLNSTIIALVTTFLTLLISSIAGYGFEIYRSPGKDRVFTILLLSMMIPFASIMIPLYRL 121
Query: 131 Y------IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGA 184
+ + + IDTL V L A F + KEL EAG + GL+ G
Sbjct: 122 FGSVTNTLPMIGIDTLAAVILPTITTA--FFIFFFRQNTKMFQKELIEAGRIDGLSELGI 179
Query: 185 FKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKN---RTLPAQILSIVAGAAGGAA 241
F I +P AAAA+ F+ SWN F+ ++ L++ +T+P +++ G A
Sbjct: 180 FLRIYVPSMKTTYAAAAIIAFMTSWNN-FLWPLVILQSPDKKTIPL----LISNLGAGYA 234
Query: 242 PAYYKFAAAFIM-ILPAMLFIFFARRYLV 269
P Y A ++ LP L F +++ V
Sbjct: 235 PDYGVIMTAIVIATLPTALVFFLMQKHFV 263
>dbj|BAB07401.1| (AP001519) sugar ABC transporter (permease) [Bacillus halodurans]
Length = 293
Score = 86.6 bits (211), Expect = 3e-16
Identities = 76/272 (27%), Positives = 128/272 (46%), Gaps = 31/272 (11%)
Query: 11 KIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPT-----SFTSQWVKTILF 64
+I Y + V L+P++ L++ + +N P +PT ++ W +
Sbjct: 25 RILLYIVLIGVAIIQLLPLVWLLLFSLKDNQEVFNLPPLALPTDPKWENYAKVWTEG--- 81
Query: 65 TLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFK-GKDTIKLSIVALRMFPIPVM 123
+G + NS+IV +I++ LL +A+ R +K K + L +V L M P+
Sbjct: 82 NIGLY--FLNSVIVTGSAVILTVLLASFVTFALTRMRWKLSKLVLGLFMVGL-MIPVHST 138
Query: 124 AIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWG 183
IPL ++ + L+D L + L +TA LP ++I + + +ELEEA ++ G +
Sbjct: 139 LIPLFNFFLNVGLMDHPLAIILTYTAFNLPLTIMILLGFYYTLPRELEEAAIMDGCSIHR 198
Query: 184 AFKSITLPLALPGLAAAAMFTFVMSWNE-VFVASILTL-KNRTLPAQILSIVA------G 235
F I LP+ P +A A+ + +WNE VFV + ++ K +TL I + + G
Sbjct: 199 LFFQIILPMTAPVVATTAIINMIYNWNEFVFVNTFISSDKYKTLTVGIQNFIGQYSTDWG 258
Query: 236 AAGGAAPAYYKFAAAFIMILPAML-FIFFARR 266
A G A I ILP +L FIF + R
Sbjct: 259 AIG---------ATLVISILPILLAFIFLSNR 281
>pir||C69588 L-arabinose transport (integral membrane protein) araQ - Bacillus
subtilis >gi|1770021|emb|CAA99594.1| (Z75208)
hypothetical protein [Bacillus subtilis]
>gi|2635338|emb|CAB14833.1| (Z99118) integral membrane
protein [Bacillus subtilis]
Length = 281
Score = 86.2 bits (210), Expect = 4e-16
Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 61 TILFTLGA--WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMF 118
T LF G+ + NS+++ + T +++ GY +A Y FKG++ I + ++ + M
Sbjct: 64 TFLFNGGSIYFKWFFNSLVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMV 123
Query: 119 PIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFG 178
P+ VM +PL L + L+LID+ GV L +A P V G+ ++L ++ + G
Sbjct: 124 PLEVMMLPLFKLTVGLHLIDSYTGVIL--PLIASPVAVFFFRQYALGLPRDLLDSARMDG 181
Query: 179 LTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNR---TLPAQILSIVAG 235
T +G F I PL P A + + SWN F+ ++ L+++ TLP + S+++
Sbjct: 182 CTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNN-FLWPLIVLRSKEMFTLPIGLSSLLSP 240
Query: 236 AAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVTMWGITL 276
+ + ILP ++ F ++Y ++ G+T+
Sbjct: 241 YGNNYD---MLISGSVFAILPVIIIFLFFQKYFIS--GLTV 276
>pir||C72756 probable multiple sugar-binding transport system permease protein
APE0040 - Aeropyrum pernix (strain K1)
>gi|5103428|dbj|BAA78949.1| (AP000058) 302aa long
hypothetical multiple sugar-binding transport system
permease protein [Aeropyrum pernix]
Length = 302
Score = 86.2 bits (210), Expect = 4e-16
Identities = 56/202 (27%), Positives = 97/202 (47%), Gaps = 8/202 (3%)
Query: 71 GIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVL 130
G NS+IVA+ +I A Y +R+ F K + L + L P ++ +PL +L
Sbjct: 95 GYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLL 154
Query: 131 YIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITL 190
L LI+T G+ L H+A + +++ + F + +E+EEA V G + + F I L
Sbjct: 155 LKNLGLINTFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVL 214
Query: 191 PLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQ--ILSIVAGAAGGAAPAYYKFA 248
P++LPG+ +A++ F W+ F I + P++ I +A G + A
Sbjct: 215 PMSLPGILSASVLQFTWVWSSFFFELIFLID----PSKWVITQRIANMKGTYLVDWGLIA 270
Query: 249 A--AFIMILPAMLFIFFARRYL 268
A F M +P +++ R Y+
Sbjct: 271 AGSVFAMAVPLAVYMLLQRYYI 292
>emb|CAB61862.1| (AL133252) putative ABC-transporter inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 280
Score = 86.2 bits (210), Expect = 4e-16
Identities = 61/240 (25%), Positives = 113/240 (46%), Gaps = 10/240 (4%)
Query: 24 WILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQ-WVKTILFTLGAWSGIKNSIIVAVLT 82
WI P++ ++AF+ + Y ++P FT + W + + S+ +A+ T
Sbjct: 16 WIAAPLLPLLIWAFAGRWVY---PALVPQDFTLRAWDQAAAPQQQVLAATGTSLGLALTT 72
Query: 83 IIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLG 142
+ + +LG A + Y ++L ++A + P +A+ + +++++ L D G
Sbjct: 73 AVTATVLGALAARGLVLYRPPAAGLVRLLLLAPVLVPPFALAVGVQEVFVRVGLSDQSAG 132
Query: 143 VALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAM 202
VAL H ALP+ VL+ +A D +E+ G +R + +TLP P L A+A
Sbjct: 133 VALVHLVPALPYTVLVMIGGYATYDVRMEQTARTLGASRSAVLRHVTLPALAPALLASAT 192
Query: 203 FTFVMSWNEVFVASILTLKN--RTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLF 260
F++SW+E ++ ++L TLP + S AG+ A A ++ P +LF
Sbjct: 193 LAFLVSWSE-YLMTVLVGGGVVTTLPLLLFSTAAGSGNQALTA---VLGILTVVPPILLF 248
>pir||F82397 maltose ABC transporter, permease protein VCA0943 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658380|gb|AAF96839.1| (AE004421) maltose ABC
transporter, permease protein [Vibrio cholerae]
Length = 296
Score = 86.2 bits (210), Expect = 4e-16
Identities = 76/282 (26%), Positives = 127/282 (44%), Gaps = 35/282 (12%)
Query: 13 AFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTIL--------- 63
A +A ++ +A I+ P+++ + A S + + +IP + + K L
Sbjct: 15 ATHAALWVFLALIIFPLLM--IVAISFREGNFATGSLIPDRPSLEHWKLALGIAVQNADG 72
Query: 64 ------FTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRM 117
F + W + NS+ VA +T ++ L + YA AR FKGK+TI +++ +M
Sbjct: 73 SVTPPPFPVMTW--LWNSVKVAGITSVLIVALSTTSAYAFARMRFKGKETILKAMMIFQM 130
Query: 118 FPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFV------VLITSSIFAGVDKELE 171
FP + + L L+ KL LG+ H + ++ V F +D+ LE
Sbjct: 131 FPAVLALVALYALFDKLGQYIPFLGLN-THGGLIFSYLGGIALHVWTIKGYFETIDRSLE 189
Query: 172 EAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILS 231
EA + G T W AF+ + LPL++P LA + +F+ EV VAS+L +
Sbjct: 190 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIGVVGEVPVASLL-----LSDVNSYT 244
Query: 232 IVAGAAGGAAPAYYKF----AAAFIMILPAMLFIFFARRYLV 269
+ G P Y + AAA + LP + A+R+LV
Sbjct: 245 LAVGMQQYLYPQNYLWGDFAAAAVLSALPITIVFLLAQRWLV 286
>pir||H83568 probable permease of ABC transporter PA0606 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946480|gb|AAG03995.1|AE004497_2 (AE004497) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 276
Score = 85.8 bits (209), Expect = 5e-16
Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 5/212 (2%)
Query: 21 VVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAV 80
V+ ++++P++V +F++ P + F+ +W + + NS+IVA
Sbjct: 24 VLLFLVLPVLVIVPLSFNSGTFLVYPLQ----GFSLRWYADFFQSAEWMRSLTNSMIVAP 79
Query: 81 LTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTL 140
+++ + G A + R F+GK + +++ + P+ ++ + + + L L ++
Sbjct: 80 AATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSY 139
Query: 141 LGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAA 200
L + + H + +PFV++ S+ G + L A G F +TLPL PG+ +
Sbjct: 140 LSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISG 199
Query: 201 AMFTFVMSWNEVFVASILT-LKNRTLPAQILS 231
A+F F S++EV V L + TLP Q+ S
Sbjct: 200 ALFAFATSFDEVVVTLFLAGPEQATLPRQMFS 231
>emb|CAB07809.1| (Z93773) permease [Thermus sp. T2]
Length = 274
Score = 85.4 bits (208), Expect = 7e-16
Identities = 67/258 (25%), Positives = 116/258 (43%), Gaps = 16/258 (6%)
Query: 26 LIPIIVSTLYAFSTKAD------YYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVA 79
L+P+ + L +F T D + P ++ ++ W + G + NS I+
Sbjct: 21 LLPMAGALLVSFRTLDDLTLRGFWSWPEEITLANYVRAWEEA-----GVRRYLLNSFIIT 75
Query: 80 VLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDT 139
+ +++ LL A YA+ R+ F+ + L +A M P ++ +P+ L +L + DT
Sbjct: 76 LPSLVGVLLLLSMAAYALVRFRFRWAFPLYLLFLAFNMVPFQMLMLPVFRLSNQLGVYDT 135
Query: 140 LLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAA 199
L HTA L F + + + L E+ ++ G W F+ I PL LPG+AA
Sbjct: 136 YWAPILFHTAFQLGFATFVLRNFARTIPPSLFESAVIDGAGEWTLFRRIAWPLMLPGIAA 195
Query: 200 AAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIM-ILPAM 258
A F +N+ A +L ++ P I + +A G + AA +M +P +
Sbjct: 196 VATLEFTWIFNDFLWALVLLGRDELKP--ITTGLANLRGQYITDWPLIVAASLMATVPTL 253
Query: 259 LFIFFARRYLVTMWGITL 276
L F +RY + G+TL
Sbjct: 254 LVFFGLQRYFIQ--GLTL 269
>gb|AAC12802.1| (U67851) ChtK [Agrobacterium sp.] >gi|3153871|gb|AAC17434.1|
(AF065242) putative inner membrane protein ChtK
[Agrobacterium tumefaciens]
Length = 290
Score = 85.4 bits (208), Expect = 7e-16
Identities = 47/155 (30%), Positives = 81/155 (51%), Gaps = 1/155 (0%)
Query: 76 IIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLN 135
I + V T ++S +L A R F + ++ + A P V A+ ++L ++
Sbjct: 79 IRIGVATCLLSLVLATFAVLGFGRQKFILQGVLEALVQAPLSVPAVVFALGAILLVARVG 138
Query: 136 LIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALP 195
L+DT +G+ +AHT + P V LI S+ ++ +D L A G W F++I PL LP
Sbjct: 139 LVDTEIGIIIAHTVLIFPVVYLIASATYSSIDPRLSLAAASLGANPWSVFRTIVFPLLLP 198
Query: 196 GLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQI 229
GLA A+ ++S++E + L+ L +TLP ++
Sbjct: 199 GLAIGALIAVLLSFDESVASIFLSDLSVKTLPRKL 233
>gb|AAC27497.1| (AF077856) PotC [Actinobacillus actinomycetemcomitans]
Length = 248
Score = 85.4 bits (208), Expect = 7e-16
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 11/245 (4%)
Query: 18 IFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSII 77
+F V A++ IPI++ +F++ D Y + F+ W + + +S+
Sbjct: 1 MFVVYAYLYIPIVILVTNSFNS--DRYG---LSWKGFSWNWYERLFNNDTLIQAAIHSVT 55
Query: 78 VAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI 137
+A ++ ++G A+ RY F+GK + + + M P VMA+ L+ L++ + +
Sbjct: 56 IAFFAATLATIVGGLTAIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMVVGIS 115
Query: 138 DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGL 197
+ LAH LP+V + S G D + EA G + + I LPLALP +
Sbjct: 116 LGFWSLLLAHVTFCLPYVTVTIFSRLNGFDARMLEAAKDLGASEITILRKIILPLALPAV 175
Query: 198 AAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILP 256
+ + +F +S ++V V+S ++ + LP +I S+V G P A A IMI+
Sbjct: 176 VSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLV---KTGVTPEVN--ALATIMIVL 230
Query: 257 AMLFI 261
++L +
Sbjct: 231 SLLLV 235
>pir||A56641 probable membrane transport protein - Clostridium perfringens
>gi|296356|emb|CAA46887.1| (X66092) putative membrane
transport protein [Clostridium perfringens]
Length = 275
Score = 85.0 bits (207), Expect = 9e-16
Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 11/264 (4%)
Query: 10 KKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKTILFTLGA 68
KKI + + +++P + L + T + P K+ P+ + + L
Sbjct: 8 KKILIHGALICGALIMIVPFLWMVLTSLKTMGEATQVPPKIFPSKPMYENYSEVSRLLPF 67
Query: 69 WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLV 128
N+II+ + ++ S A YA AR F GK ++ M P + +P
Sbjct: 68 GKFYMNTIIMLIFRVVGSVFFSAMAAYAFARLNFPGKKIFFALVLFQMMIPAQIFIVPQF 127
Query: 129 VLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
+L KL L++T+ + + A F + F G+ KELEEA + G W F +
Sbjct: 128 LLVQKLGLLNTISALVIPGIVSA--FGTFLLRQFFMGLPKELEEAAKLDGCNTWQTFYKV 185
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVASI--LTLKNRTLPAQILSIVAGAAGGAAPAYYK 246
LPLA GL A +FT + ++ ++ + +++ TL A + S+ G + Y +
Sbjct: 186 MLPLARSGLVALGIFTALFAFKDLMWPLVVNMSVDKMTLSAGLASL----QGQFSTNYPQ 241
Query: 247 FAAAFIMILPAMLFIF--FARRYL 268
A ++ + ML IF F R+++
Sbjct: 242 LMAGSVLAIWPMLIIFVIFQRKFI 265
>pir||I64117 spermidine/putrescine transport system permease potC - Haemophilus
influenzae (strain Rd KW20) >gi|1574804|gb|AAC22989.1|
(U32813) spermidine/putrescine ABC transporter, permease
protein (potC) [Haemophilus influenzae Rd]
Length = 247
Score = 85.0 bits (207), Expect = 9e-16
Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 9/245 (3%)
Query: 18 IFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSII 77
+F V A++ IPII+ +F+ D Y + F+ W + + +S+
Sbjct: 1 MFVVYAYLYIPIIILVTNSFNK--DRYG---LSWKGFSWNWYERLFNNDTLIQAAIHSVT 55
Query: 78 VAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI 137
+A ++ ++G A+ RY F+GK + + + M P VMA+ L+ L++ + +
Sbjct: 56 IAFFAATLATIVGGLTAIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMVVGIS 115
Query: 138 DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGL 197
+ LAH LP+V + S G D + EA G + + I LPLALP +
Sbjct: 116 LGFWSLLLAHVTFCLPYVTVTIFSRLNGFDSRMLEAAKDLGASEVTILRKIILPLALPAV 175
Query: 198 AAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILP 256
+ + +F +S ++V V+S ++ + LP +I S+V G P A I++
Sbjct: 176 VSGWLLSFTISLDDVVVSSFVSGVSYEILPLRIFSLV---KTGVTPEVNALATIMIVLSL 232
Query: 257 AMLFI 261
A++ +
Sbjct: 233 ALVVL 237
>sp|P37729|AMYC_THETU POTENTIAL STARCH DEGRADATION PRODUCTS TRANSPORT SYSTEM PERMEASE
PROTEIN AMYC >gi|481066|pir||S37705 amyC protein -
Thermoanaerobacterium thermosulfurigenes
>gi|565384|gb|AAB00844.1| (M57692) membrane protein for
maltose transport [Thermoanaerobacterium
thermosulfurigenes] >gi|228283|prf||1802282B sugar
transport protein [Thermoanaerobacterium
thermosulfurigenes]
Length = 274
Score = 84.7 bits (206), Expect = 1e-15
Identities = 67/274 (24%), Positives = 115/274 (41%), Gaps = 21/274 (7%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLY-----AFSTKADYYNPHKVIPTSFTSQWVKTIL 63
++K+ ++ T + +L + +S Y +F TK + + +P S KT
Sbjct: 1 MRKVHVQKYLLTFLGIVLSLLWISPFYIILVNSFKTKLELFTNTLSLPKSLMLDNYKTAA 60
Query: 64 FTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVM 123
L N++I+ V +I+I + YA+ R K I + + P +
Sbjct: 61 ANLNLSEAFSNTLIITVFSILIIAIFSSMTAYALQRVKRKSSVIIYMIFTVAMLIPFQSV 120
Query: 124 AIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWG 183
IPLV + K + + T G+ + V + G+ L+EA ++ G +R+
Sbjct: 121 MIPLVAEFGKFHFL-TRSGLVFMYLGFGSSLGVFLYYGALKGIPTSLDEAALIDGCSRFR 179
Query: 184 AFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLK--NRTLPAQILSIVAGAAGGAA 241
+ +I LPL P A+ + WN+ + S++ K +RTLP I +
Sbjct: 180 IYWNIILPLLNPTTITLAVLDIMWIWNDYLLPSLVINKVGSRTLPLMIFYFFS------- 232
Query: 242 PAYYK-----FAAAFIMILPAMLFIFFARRYLVT 270
Y K A I ILP ++F F A+R LVT
Sbjct: 233 -QYTKQWNLGMAGLTIAILPVVIFYFLAQRKLVT 265
>emb|CAA61936.1| (X89810) putative integral protein [Bacillus subtilis]
Length = 281
Score = 84.7 bits (206), Expect = 1e-15
Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 13/221 (5%)
Query: 61 TILFTLGA--WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMF 118
T LF G+ + NS+++ + T +++ GY +A Y FKG++ I + ++ + M
Sbjct: 64 TFLFNGGSIYFKWFFNSLVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMV 123
Query: 119 PIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFG 178
P+ VM +PL L + L+LID+ GV L + P V G+ ++L ++ + G
Sbjct: 124 PLEVMMLPLFKLTVGLHLIDSYTGVILPF--IVSPVAVFFFRQYALGLPRDLLDSARMDG 181
Query: 179 LTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNR---TLPAQILSIVAG 235
T +G F I PL P A + + SWN F+ ++ L+++ TLP + S+++
Sbjct: 182 CTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNN-FLWPLIVLRSKEMFTLPIGLSSLLSP 240
Query: 236 AAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVTMWGITL 276
+ + ILP ++ F ++Y ++ G+T+
Sbjct: 241 YGNNYD---MLISGSVFAILPVIIIFLFFQKYFIS--GLTV 276
>emb|CAB61916.1| (AL133278) putative transport system permease protein [Streptomyces
coelicolor A3(2)]
Length = 306
Score = 83.9 bits (204), Expect = 2e-15
Identities = 69/253 (27%), Positives = 117/253 (45%), Gaps = 9/253 (3%)
Query: 15 YAFIFTVVAWILIPII--VSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGI 72
Y + V+A + P + +ST T+ + +P K +P+ T + + T+ W
Sbjct: 43 YLLLLGVLALTIGPFLWQLSTSLKGPTEDIFSSPPKFLPSDPTLHNYERVADTIPVWDYA 102
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
NS+ VA ++ + + AGYA+AR ++G+ L + + P+ + I
Sbjct: 103 LNSLKVAAANVVTNCVGAALAGYALARLRYRGRRVATLVFILAMLVPVEGIIIAQFTTMR 162
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
+L L +TL+GV L AL VL+ + F + E+EEA V G W F I LP
Sbjct: 163 ELGLNNTLVGVVLPGCVSALN--VLLMRNAFLNLPYEIEEAAFVDGANVWQRFLRIALPA 220
Query: 193 ALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGGAAPAYYKFAAAF 251
LA A+F F+ +W++ F+ ++ L + P++ L+I G + AA
Sbjct: 221 VKGTLAVVAIFAFMGAWDD-FLWPLIVLSD---PSRFTLTIGLNYLHGTFANDERLVAAG 276
Query: 252 IMILPAMLFIFFA 264
+I A L + FA
Sbjct: 277 TIIAVAPLIVLFA 289
>emb|CAB71198.1| (AL138538) putative sugar transport inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 303
Score = 83.9 bits (204), Expect = 2e-15
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 8/226 (3%)
Query: 55 TSQW--VKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSI 112
T +W + +L T G + KN+++ A L +++ +P YA+A++ F+G+ + +
Sbjct: 77 TWEWGNYRAVLDTPGFLTWWKNTLLYAGLGTVLTVASSVPVAYALAKFRFRGRHLSLMLV 136
Query: 113 VALRMFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEE 172
+++ M P V+ IP+ + + K + L + A F + + + E +
Sbjct: 137 ISMMMLPPQVIIIPMYLFWAKQLDLSGTLWPLIVPMAFGDAFSIFLLRQFLLTIPDEYLD 196
Query: 173 AGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSI 232
A V G + LP+A PG+AA A+F F +WN+ F I +N A LS
Sbjct: 197 AAKVDGCGELRTLLRVVLPMAKPGIAAVALFQFFYAWNDYFGPQIYASENP--GAWTLSY 254
Query: 233 VAGAAGGAAPAYYK--FAAAFIMILPAMLFIFFARRYLVTMWGITL 276
+ GA + AA +++ P +L FFA++ V G+TL
Sbjct: 255 GLESFKGAHHTDWNLTMAATVLVMAPVILVFFFAQKAFVE--GVTL 298
>pir||A83608 polyamine transport protein PotI PA0304 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946149|gb|AAG03693.1|AE004468_5 (AE004468)
polyamine transport protein PotI [Pseudomonas
aeruginosa]
Length = 289
Score = 83.9 bits (204), Expect = 2e-15
Identities = 63/251 (25%), Positives = 120/251 (47%), Gaps = 22/251 (8%)
Query: 24 WILIPIIVSTLYAFSTKADYYNPHKVIPT--SFTSQWVKTILFTLGAWSGIKNSIIVAVL 81
+I +P+++ +Y+F N K++ ++ +W +L S + S+ +A
Sbjct: 17 FIYLPMLILVIYSF-------NASKLVTVWGGWSVKWYVGLLDNTQLVSSVGRSLEIAFY 69
Query: 82 TIIISFLLGIPAGYAIARYV-FKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI--- 137
T S LG A + + R F+G+ + A + P + + L++L++ + +
Sbjct: 70 TAFSSVFLGTLAAFVLTRIPRFRGRTLFGGMVTAPLVMPEVITGLSLLLLFVAMAQLIGW 129
Query: 138 ---DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLAL 194
++ + +AHT+ +V ++ S+ +D +EEA M G W F IT+P+
Sbjct: 130 PQERGIVTIWIAHTSFCSSYVAVVVSARLRELDLSIEEAAMDLGAKPWKVFLLITIPMIA 189
Query: 195 PGLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIM 253
P LAA M +F +S +++ +AS ++ + TLP ++ S V G P A A ++
Sbjct: 190 PSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAV---RLGVKPEIN--AVASLI 244
Query: 254 ILPAMLFIFFA 264
+L LF FFA
Sbjct: 245 LLSVSLFTFFA 255
>pir||G75412 spermidine/putrescine ABC transporter, permease protein -
Deinococcus radiodurans (strain R1)
>gi|6459052|gb|AAF10874.1|AE001977_7 (AE001977)
spermidine/putrescine ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 270
Score = 83.5 bits (203), Expect = 3e-15
Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 23 AWILIPIIVSTLYAFSTKADYYNPHKVIPT--SFTSQWVKTILFTLGAWSGIKNSIIVAV 80
A++ +PI+V +++F N K T FT++W + + N+++VAV
Sbjct: 18 AFLYLPILVLIVFSF-------NDSKFGATWQGFTTKWYSVLFARPDVREAVTNTLLVAV 70
Query: 81 LTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTL 140
+ ++ +LG G+ + R F+G+ + +V + P VM + L++ Y + +
Sbjct: 71 GSTAVATVLGTLVGFGLWRGGFRGRLPLTFLLVMPIVIPDVVMGVMLLMFYALVRGLLER 130
Query: 141 LG---------VALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
G V LAH L +V L S AG +ELEEA G T +F + LP
Sbjct: 131 TGWTFENGFWTVMLAHVTFQLSYVALNVRSRLAGYGRELEEAAADLGATPVQSFFQVILP 190
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLKN--RTLPAQILSIVAGAAGGAAPAYYKFAA 249
LALPG+ + A+ F +S ++ FV + T + +TLP I + V G P +A
Sbjct: 191 LALPGVLSGALLAFTLSLDD-FVVTYFTSGSGFKTLPVLIYTSV---KKGVTPDINALSA 246
Query: 250 AFIMILPAML 259
++ +L
Sbjct: 247 MLVLFTVLLL 256
>gb|AAG20920.1| (AE005158) sn-glycerol-3-phosphate transport system permease; UgpE
[Halobacterium sp. NRC-1]
Length = 292
Score = 83.5 bits (203), Expect = 3e-15
Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 12/252 (4%)
Query: 18 IFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSII 77
+F +A + P++++ L + T A+ Y P + P S Q + L T + + NS++
Sbjct: 33 LFGAIALMAAPLVLAVLMSTQTTAEVYQPTTIGPGSNALQNYQAALTTYNFGTYLLNSLV 92
Query: 78 VAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI 137
+++ +I L + A A+ Y + I + ++ + P+PV +PL L L
Sbjct: 93 MSIAVVIGKVTLSLLAALALVYYELPYERAIFMFVLLTLLLPVPVRIVPLFQLMADLGWT 152
Query: 138 DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGL 197
+TLL + + A A V + F + L E V G+ + S+ +P++ +
Sbjct: 153 NTLLAITGPYIASAT--AVFLFRQHFRSIPDSLVETAHVDGVGPFRFLVSVLIPMSRSMI 210
Query: 198 AAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYK-----FAAAFI 252
A + TF+ SWN+ F+ ++ + ++ P+Q+ + GAA A AAA +
Sbjct: 211 AGVCVITFIYSWNQ-FLWPLIAVTDK--PSQVAQVGIRYIQGAAQAGLTQWGVIMAAAVL 267
Query: 253 MILP--AMLFIF 262
+LP A+L +F
Sbjct: 268 ALLPPLAVLLVF 279
>pir||E70693 probable ugpE protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1648886|emb|CAB03652.1| (Z81331) ugpE [Mycobacterium
tuberculosis]
Length = 275
Score = 83.1 bits (202), Expect = 3e-15
Identities = 61/262 (23%), Positives = 108/262 (40%), Gaps = 3/262 (1%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYY-NPHKVIPTSFTSQWVKTILFTLG 67
L+ YA + VV I P++ +F + D Y P P + Q +T +
Sbjct: 6 LRSSVGYAAMLLVVTLIAGPLLFVFFTSFKDQPDIYAQPTSWWPLRWYPQNYRTATEQIP 65
Query: 68 AWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPL 127
W+ ++NS+I+ + ++ F LG+ + + + F G+ + L I+A M P + I
Sbjct: 66 FWTFLRNSLIITSVLAVVKFTLGVLSAFGLVFVRFPGRTAVFLVIIAALMVPNQITVISN 125
Query: 128 VVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKS 187
L L L +T G+ L +A F + + F + E+ EA + G W
Sbjct: 126 YALISHLGLRNTFAGIILPLAGVA--FGTFLMRNHFLSLPAEIIEAARMDGARWWQLLLR 183
Query: 188 ITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKF 247
+ LP++ P + A + T V WNE +++ P I A G
Sbjct: 184 VVLPMSRPTMVAVGVITVVNEWNEYLWPFLMSDDESVAPLPIGLTFLQQAEGVTNWGPVM 243
Query: 248 AAAFIMILPAMLFIFFARRYLV 269
A + +LP +L +R ++
Sbjct: 244 AVTLLAMLPILLVFIALQRQMI 265
>gb|AAF43782.1|AF135015_1 (AF135015) putative integral membrane protein [Thermoanaerobacter
ethanolicus]
Length = 280
Score = 83.1 bits (202), Expect = 3e-15
Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 15/278 (5%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
MN K KI Y F+ + ++PI + + A + + ++P+S + WV
Sbjct: 1 MNYKLRIKFMKIGVYIFLIILFLLAILPIWLLLVNATRSTPEIQQGVSLLPSS--NLWVN 58
Query: 61 TILFT---LGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRM 117
T + W G NS+I++V ++ + YAI Y FK K + ++V L +
Sbjct: 59 WNHLTGMGVNIWRGFLNSLIISVPVTFLTVYFSMMTAYAIHVYDFKWKKMLYNTVVLLTI 118
Query: 118 FPIPVMAIPLVVLY---IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAG 174
+P +P++ Y L L+++ + + + A P V L + + + K+L EA
Sbjct: 119 --VPTQLVPIIGFYKYMASLKLLNSYIPLIVPAIASP-PMVFLALQYLESTIVKDLIEAA 175
Query: 175 MVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSI 232
+ G G F I LP+A PG + +FV SWN F +L ++ TLP I+ +
Sbjct: 176 RIEGSGELGIFHKIILPIAKPGAFTMGILSFVASWNNFFTPFMLISKIEKYTLP-MIVKL 234
Query: 233 VAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVT 270
+ G A MI +++ F+ +Y+V+
Sbjct: 235 LRGDMYRTEYGAIYLGLAITMIPIIIVYAIFS-KYIVS 271
>emb|CAB95277.1| (AL359779) putative sugar transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 275
Score = 82.7 bits (201), Expect = 5e-15
Identities = 51/201 (25%), Positives = 93/201 (45%), Gaps = 3/201 (1%)
Query: 75 SIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKL 134
S+ V++ + I + PA Y +AR+ +G TI + +M P V+A L Y+ L
Sbjct: 73 SLAVSLGAVAICLAISAPAAYGLARFGLRGSRTIVFGTLITQMVPGIVIANALYNSYVDL 132
Query: 135 NLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLAL 194
L+++ G+ LA ++ +PF +++ S + E+ EA + G F + LP++
Sbjct: 133 GLVNSYFGLMLADASLGIPFSIVLMRSFMVSIPGEVIEAAQIDGAGPVRTFVRVVLPMSR 192
Query: 195 PGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMI 254
L + +F F+ SW++ A L + P L I AA+ +
Sbjct: 193 NSLITSGLFAFLFSWSDFMFALTLNTTDEVKPI-TLGIYQYIGAHVGDWGSVMAASVLSA 251
Query: 255 LPAMLFIFFARRYLVTMWGIT 275
+PA + + A++Y+ GIT
Sbjct: 252 VPAAILLVLAQKYIAA--GIT 270
>emb|CAB65653.1| (AJ252161) putative maltose transport membrane protein
[Alicyclobacillus acidocaldarius]
Length = 301
Score = 82.3 bits (200), Expect = 6e-15
Identities = 66/269 (24%), Positives = 129/269 (47%), Gaps = 12/269 (4%)
Query: 3 EKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTI 62
E+ A + +I I+ V+ +L+P+ + +F+ Y + + P++ + K +
Sbjct: 31 EQVALWVSRIV----IWCVIVMVLLPMWFVVIASFNPSNSYIS-FSLFPSNASLANYKAL 85
Query: 63 LFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPV 122
W+ ++NS++V V+ + + + +A ++ F G+ ++++ L+MFP +
Sbjct: 86 FQGGQFWTWVRNSLVVGVVVAMAQSFITAMSAFAFSKLRFYGRKYGLMTLLLLQMFPNIL 145
Query: 123 MAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRW 182
KLN+ID +LG + F + + V KEL+EA ++ G T W
Sbjct: 146 AIAAFYTALAKLNMID-MLGSYILVMLGTSAFNIWLLKGYMDSVPKELDEAAVIDGATTW 204
Query: 183 GAFKSITLPLALPGLAAAAMFTFVMSWNE-VFVASILTLK-NRTLPAQILSIVAGAAGGA 240
F +TLPL+ P + T V ++E +F +IL N TL + ++++G
Sbjct: 205 QRFIHVTLPLSTPMMVVIFFLTLVGIFSEYMFAGTILQSPWNYTLGVGMYNLISGQ---F 261
Query: 241 APAYYKFAAAFIM-ILPAMLFIFFARRYL 268
A + +FAAA ++ +P + A+RYL
Sbjct: 262 AKNWGEFAAAALLSAVPLAIVFAVAQRYL 290
>gb|AAG20068.1| (AE005086) spermidine/putrescine ABC transporter permease; PotC
[Halobacterium sp. NRC-1]
Length = 271
Score = 81.9 bits (199), Expect = 8e-15
Identities = 61/250 (24%), Positives = 113/250 (44%), Gaps = 8/250 (3%)
Query: 13 AFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGI 72
A A+ V+A + +P++V + + + A P T T + L +
Sbjct: 14 ALSAWTVAVLAVLWLPLVVIIVLSVAENAATILPF----TGVTLAHYQATLQDGALLGSV 69
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
NS +A L +++ +G+PA A+ RY + ++++V + P V+ I +++
Sbjct: 70 ANSATIATLASVLATAVGVPASVALVRYDVPLSNAFRVAVVLPMVVPGVVLGIGVLISIR 129
Query: 133 KL-NLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
L + + L H LPFVVL+ S+ A VD L +A G + AF+ +TLP
Sbjct: 130 TLPGITPGFVPTVLTHAVYGLPFVVLLVSARLAAVDDTLADAARDLGASPLVAFRDVTLP 189
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
P +A+ +F +V S+ E A ++ L ++ +++ A G AP A
Sbjct: 190 AIAPAVASGFLFAWVRSFEEFVRAYFVSGTTDVLTTEMYALL---AYGTAPKLNVIATLV 246
Query: 252 IMILPAMLFI 261
+ +L +L +
Sbjct: 247 LFVLAVVLAV 256
>emb|CAA91218.1| (Z56279) integral membrane protein [Thermoanaerobacter brockii]
Length = 280
Score = 81.5 bits (198), Expect = 1e-14
Identities = 69/278 (24%), Positives = 123/278 (43%), Gaps = 15/278 (5%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
MN K KI Y F+ + ++PI + + A + + ++P+S + WV
Sbjct: 1 MNYKPRIKFMKIGVYIFLIILFLLAILPIWLLLVNATRSTPEIQQGVSLLPSS--NLWVN 58
Query: 61 TILFT---LGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRM 117
T + W G NS+I++V ++ + YAI Y FK K + ++V L +
Sbjct: 59 WNHLTGMGVNIWRGFLNSLIISVPVTFLTVYFSMMTAYAIHVYDFKWKKMLYNTVVLLTI 118
Query: 118 FPIPVMAIPLVVLY---IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAG 174
+P +P++ Y L L+++ + + + A P V + + + K+L EA
Sbjct: 119 --VPTQLVPIIGFYKYMASLKLLNSYIPLIVPAIASP-PMVFFALQYLESTIVKDLIEAA 175
Query: 175 MVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSI 232
+ G G F I LP+A PG + +FV SWN F +L ++ TLP I+ +
Sbjct: 176 RIEGSGELGIFHKIILPIAKPGAFTMGILSFVASWNNFFTPFMLISKIEKYTLP-MIVKL 234
Query: 233 VAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVT 270
+ G A MI +++ F+ +Y+V+
Sbjct: 235 LRGDMYRTEYGAIYLGLAITMIPIIIVYAIFS-KYIVS 271
>gi|10954680 probable mikimopine transporter gene~similar to potC gene
[Agrobacterium rhizogenes] >gi|10567344|dbj|BAB16153.1|
(AP002086) probable mikimopine transporter gene~similar
to potC gene [Agrobacterium rhizogenes]
Length = 266
Score = 81.5 bits (198), Expect = 1e-14
Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 12/218 (5%)
Query: 17 FIFTVV--AWILIPIIVSTLYAFSTKADYYNPHKVI--PTSFTSQWVKTILFTLGAWSGI 72
+I TV+ A++L P+++ +F NP ++ P FT +W TI S
Sbjct: 12 YIGTVLFFAFLLAPLLILIAVSF-------NPTSMVFPPQGFTLKWYGTIFDKPDFLSAA 64
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
+S I+ V+T + + LG+ A + RY K + +++ P ++A+ L +
Sbjct: 65 VSSTILGVITAVATTTLGVLAAIGLQRYTGAAKPIVSSLLMSPLFIPAVIVALALFQIIF 124
Query: 133 KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPL 192
+ + + + + AH + +P+ V + D LEEA + G T A + +TLPL
Sbjct: 125 IMGIGNNIWVLLAAHIVVTIPYPVRNVMAQMENFDVRLEEAALSVGATPAQALRRVTLPL 184
Query: 193 ALPGLAAAAMFTFVMSWNEVFVASILTLKN-RTLPAQI 229
+ + + FV+SWN V+ L K+ TLP Q+
Sbjct: 185 LKASIIPSLIIVFVLSWNNYTVSVFLANKDWTTLPLQL 222
>sp|P77505|YDCV_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDCV
>gi|7446697|pir||F64896 probable membrane protein b1443
- Escherichia coli >gi|1742351|dbj|BAA15072.1| (D90783)
Spermidine/putrescine transport system permease protein
PotC. [Escherichia coli] >gi|1742358|dbj|BAA15078.1|
(D90784) Spermidine/putrescine transport system permease
protein PotC. [Escherichia coli]
>gi|1787714|gb|AAC74525.1| (AE000241) putative transport
system permease protein [Escherichia coli K12]
Length = 264
Score = 80.4 bits (195), Expect = 2e-14
Identities = 59/230 (25%), Positives = 97/230 (41%), Gaps = 8/230 (3%)
Query: 2 NEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKT 61
+E+ F LK A+ +F + PI++ YAF+T+ ++ P T +W
Sbjct: 3 SERAPFFLKLAAWGGVVF-----LHFPILIIAAYAFNTEDAAFS---FPPQGLTLRWFSV 54
Query: 62 ILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
+ S+ VA L +I+ +LG A A+ R F GK+ I L ++ P
Sbjct: 55 AAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGI 114
Query: 122 VMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
V + L+ + +NL + + H + V + F L EA M G
Sbjct: 115 VTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANG 174
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILS 231
W F+ + LP L A M F +S++E+ V + RTLP +L+
Sbjct: 175 WQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLN 224
>pir||T30907 probable transport protein - Caldocellum saccharolyticum
>gi|2645414|gb|AAB87369.1| (AF005383) putative transport
protein [Caldicellulosiruptor saccharolyticus]
Length = 339
Score = 80.4 bits (195), Expect = 2e-14
Identities = 68/302 (22%), Positives = 125/302 (40%), Gaps = 49/302 (16%)
Query: 8 MLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILFTL 66
+LKK+ YAF+ + +L PI+ A +K D ++P + IP T + L
Sbjct: 33 VLKKVFLYAFVICMSYILLYPILFLISNALRSKEDLFDPSVIWIPKHITFSNFEYANVLL 92
Query: 67 GAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIP 126
+ IKN++++ + ++II + + GY AR+ F ++ + ++ + P+ + +P
Sbjct: 93 SYPTAIKNTLLMLIPSVIIQTFISMMVGYGFARFRFAEREILFTILLFTIVVPLQTIIVP 152
Query: 127 LVV-------LYI------------KLNLIDT--------LLGVALAHTAMALPFVVLIT 159
L V LYI +NL+DT L G+ + + + +
Sbjct: 153 LYVKFRYFDFLYIGKLLGFITGKPLTVNLLDTPWPFYILNLFGMGIRSS-----LYIFVF 207
Query: 160 SSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILT 219
F + ELEEA + G + F I +P A + +F+ V WN+ +V+++
Sbjct: 208 RQFFRNMPVELEEAAKIDGCGPFSTFIRIMVPNATGAIITVMLFSIVWHWNDYYVSAM-- 265
Query: 220 LKNRTLPAQILSIVAGAAGGAAPAYYKF--------------AAAFIMILPAMLFIFFAR 265
N LP ++ V Y F A ++ILP ++ +
Sbjct: 266 FYNENLPISVMLTVLNNRMSMIQDAYNFSSEDIYLMGSTVLEAGCLMVILPLIVIYIIGQ 325
Query: 266 RY 267
RY
Sbjct: 326 RY 327
>emb|CAC01654.1| (AL391072) putative sugar-binding integral membrane transport
protein [Streptomyces coelicolor A3(2)]
Length = 303
Score = 80.4 bits (195), Expect = 2e-14
Identities = 51/196 (26%), Positives = 89/196 (45%)
Query: 75 SIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKL 134
+++ +L ++S L+ P Y IAR + + L VA P V+ IP+V + L
Sbjct: 99 TLLFVLLVNVLSLLVSAPVSYVIARGTTRWHTALLLLFVAGTFVPSQVLLIPVVYVLKYL 158
Query: 135 NLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLAL 194
L+ T+ G L TA+ LP V + S+ + +EL++A V GL R F+ + LPL
Sbjct: 159 GLMGTVPGFVLFETALTLPVSVFLYSAYIRTIPRELDQAASVDGLGRLRTFQLVVLPLMR 218
Query: 195 PGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMI 254
P +A A + + WN+ I+ L + A + F + +
Sbjct: 219 PMVATAVILHSLSVWNDFANPQIILGPGSGLYTVTTGVYAAVGKYSTHYAVVFPNLLLAV 278
Query: 255 LPAMLFIFFARRYLVT 270
PA+ F +R++++
Sbjct: 279 APALAFFAIMQRHIIS 294
>emb|CAB88163.1| (AL352956) putative binding-protein-dependent transport protein.
[Streptomyces coelicolor A3(2)]
Length = 272
Score = 80.0 bits (194), Expect = 3e-14
Identities = 75/255 (29%), Positives = 110/255 (42%), Gaps = 12/255 (4%)
Query: 22 VAWILI---PIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILFTLGAWSGIKNSII 77
+ W+++ P+ V T+ DY V +P SFT T F G N+++
Sbjct: 14 LVWLVLVGLPLYVMLAATLRTRQDYAENGPVSLPDSFTLDNF-TGAFDSGFGQYFFNTLV 72
Query: 78 VAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAI--PLVVLYIKLN 135
V I I LL P YAI R +G+ T + + L IP A+ P+ L +
Sbjct: 73 VTACVIGIVLLLVPPLAYAIVRS--RGRATSAIFRLFLLGLAIPAQAVIVPMFYLISEAG 130
Query: 136 LIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALP 195
L D LLGV L A LP LI S + EL EA + G + F + +PL+
Sbjct: 131 LYDNLLGVILPTAAFCLPMSALILSGSMRDISPELYEAMAMDGASPRRMFFQLVMPLSRG 190
Query: 196 GLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGGAAPAYYKFAAAFIMI 254
GL+ +F+ + +WN +LT + T + L A G P A + +
Sbjct: 191 GLSTIVVFSALQAWNGFLFPLVLTQSDSTKVVTLGLYNFQTAHGIDIPGL--LGAVVLSM 248
Query: 255 LPAMLFIFFARRYLV 269
+P +L FARR LV
Sbjct: 249 VPILLVYLFARRALV 263
>pir||E83605 probable permease of ABC transporter PA0324 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946171|gb|AAG03713.1|AE004470_7 (AE004470) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 262
Score = 80.0 bits (194), Expect = 3e-14
Identities = 60/242 (24%), Positives = 109/242 (44%), Gaps = 9/242 (3%)
Query: 23 AWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLT 82
A++ IPI+V + +F++ + SF+ +W + KNS++VA L
Sbjct: 22 AFLYIPILVLVVLSFNS-----GQSATLWESFSLKWYAVVANDPEILRAAKNSLLVATLA 76
Query: 83 IIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLG 142
+ S +L A + F+G+ + + + P V A+ ++ + + L +L
Sbjct: 77 TLASTVLATLAALGMRGRAFRGQTLMNGVLGLPLLVPEIVTAVATLMFFSFIGLKLSLFT 136
Query: 143 VALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAM 202
+ +AH +PF L + G+D L EA + W AF ITLPL +PG+ + AM
Sbjct: 137 ILIAHIVFCIPFAYLPIRARLEGLDPRLAEAAADLYASPWKAFWKITLPLLMPGVLSGAM 196
Query: 203 FTFVMSWNE-VFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFI 261
F++S ++ V + TLP I S + G +P ++ +MI A + +
Sbjct: 197 LAFIISMDDFVITYFVAGAGATTLPVYIFSSI---RMGISPKINAISSIILMISIAFVAL 253
Query: 262 FF 263
+
Sbjct: 254 SY 255
>pir||G71296 probable spermidine/putrescine ABC transporter, permease protein
(potC) - syphilis spirochete >gi|3322955|gb|AAC65629.1|
(AE001240) spermidine/putrescine ABC transporter,
permease protein (potC) [Treponema pallidum]
Length = 272
Score = 79.6 bits (193), Expect = 4e-14
Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 8/215 (3%)
Query: 21 VVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILF-TLGAWSGIKNSIIVA 79
VV+++ +P+ V L++F+ +I T F+ +W + F + WS NS+++A
Sbjct: 27 VVSFLFLPLAVIALFSFN------KDKSLIWTGFSLRWYTELFFYSEKLWSSFLNSVLIA 80
Query: 80 VLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDT 139
++ +++ ++G A AI Y F G+ ++ + + P + + ++V + + L
Sbjct: 81 SVSALVATIVGTAAAIAIRWYRFSGRLYAQVMSLLPMLLPEVITGMAMLVFFSLVRLPLG 140
Query: 140 LLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAA 199
+ AH LPFV+L+ + D L EA G W A I +P +PG+ +
Sbjct: 141 RASIITAHITFCLPFVLLLILTRIDTFDLSLIEAAQDLGANEWQALGKIVIPAIMPGILS 200
Query: 200 AAMFTFVMSWNE-VFVASILTLKNRTLPAQILSIV 233
+ + +S + V + + TLP + S++
Sbjct: 201 GFLLSVTLSLEDFVITFFVAGPGSTTLPLYVFSMI 235
>gi|10955062 motD [Agrobacterium tumefaciens] >gi|1381801|gb|AAC18648.1|
(AF242881) motD [Agrobacterium tumefaciens]
Length = 273
Score = 79.2 bits (192), Expect = 5e-14
Identities = 53/213 (24%), Positives = 101/213 (46%), Gaps = 12/213 (5%)
Query: 11 KIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWS 70
+I YAF F + ++LIP ++ +FS P P +++ +W +T +
Sbjct: 18 RIWLYAFGFIALLYLLIPTLIVIPMSFSDSQYLEFP----PKAYSLKWFETYFGSAEWMR 73
Query: 71 GIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVV- 129
S+ A T I + + G A Y + G ++ + + P+ V +I + +
Sbjct: 74 ATFVSVRAAFFTSIFATIFGTAAAYG----TWIGSAQLRTPLSGFFILPLSVPSILIAIG 129
Query: 130 ---LYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFK 186
++ + L++T G+ +AHT +A+PFV ++ ++ D E A G +R AF
Sbjct: 130 SLFVFSRFGLVNTTAGLVIAHTMLAIPFVFIVITAGLTSYDMNQEMAARSLGASRARAFF 189
Query: 187 SITLPLALPGLAAAAMFTFVMSWNEVFVASILT 219
++TLP + +A+F F +S +EV VA ++
Sbjct: 190 TVTLPQIKFSVITSALFAFYVSLDEVIVAMFIS 222
>pir||F70943 hypothetical protein Rv2039c - Mycobacterium tuberculosis (strain
H37RV) >gi|2896776|emb|CAA17253.1| (AL021899)
hypothetical protein Rv2039c [Mycobacterium
tuberculosis]
Length = 280
Score = 79.2 bits (192), Expect = 5e-14
Identities = 69/271 (25%), Positives = 120/271 (43%), Gaps = 11/271 (4%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTS--QW--VKTILF 64
++ +A YA + + L PII + + S KAD PT F S QW + +
Sbjct: 13 IRGLALYAGLIGIAWCALFPIIWAL--SGSLKAD---GEVTEPTLFPSHPQWSNYREVFA 67
Query: 65 TLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMA 124
+ W N+++ A AGYA AR F+G+DT+ + ++ M P+ V
Sbjct: 68 LMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTV 127
Query: 125 IPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGA 184
IP V+L + +DT + + F + F + +LEEA ++ G + W
Sbjct: 128 IPQVILMRIVGWVDTPWAM-IVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQI 186
Query: 185 FKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAY 244
+ I LP + P + + T+V WN+ F+ +L ++ +L L +V A
Sbjct: 187 YWRILLPHSRPAVLVLGVLTWVNVWND-FLWPLLMIQRNSLATLTLGLVRLRGEYVARWP 245
Query: 245 YKFAAAFIMILPAMLFIFFARRYLVTMWGIT 275
AA+ +M++P ++ A+R V +T
Sbjct: 246 VLMAASMLMLVPLVILYAVAQRSFVRGIAVT 276
>sp|P26468|MALG_SALTY MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALG
>gi|280124|pir||A60175 maltose transport inner membrane
protein malG - Salmonella typhimurium
>gi|47775|emb|CAA38191.1| (X54292) malG [Salmonella
typhimurium] >gi|154172|gb|AAA27160.1| (M33921) inner
membrane protein (malG) [Salmonella typhimurium]
Length = 296
Score = 78.8 bits (191), Expect = 7e-14
Identities = 63/206 (30%), Positives = 98/206 (46%), Gaps = 16/206 (7%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+ +A +T I L YA AR F GK T+ ++ +MFP + + L L+ +
Sbjct: 87 NSVKIAGITAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDR 146
Query: 134 LNL------IDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKS 187
L ++T GV A+ + V F +D LEEA + G T W AF+
Sbjct: 147 LGQYIPFIGLNTHGGVIFAYLG-GIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRL 205
Query: 188 ITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKF 247
+ LPL++P LA + +F+ + EV VAS+L R + + L++ G P Y +
Sbjct: 206 VLLPLSVPILAVVFILSFIAAITEVPVASLLL---RDVDSYTLAV--GMQQYLNPQNYLW 260
Query: 248 ----AAAFIMILPAMLFIFFARRYLV 269
AAA + +P L A+R+LV
Sbjct: 261 GDFAAAAVLSAIPITLVFLLAQRWLV 286
>pir||B71007 hypothetical protein PH1352 - Pyrococcus horikoshii
>gi|3257775|dbj|BAA30458.1| (AP000006) 559aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 559
Score = 78.8 bits (191), Expect = 7e-14
Identities = 49/169 (28%), Positives = 84/169 (48%), Gaps = 16/169 (9%)
Query: 56 SQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVAL 115
S + + I FT G +++ VLT+I+SF P Y ++ Y F GK T+K I
Sbjct: 77 SYYRRVISFTFG------QAVLSTVLTLIVSF----PGAYVLSHYDFPGKRTLKAIITVP 126
Query: 116 RMFPIPVMAIPLVVLYIK------LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKE 169
+ P ++A+ ++L+ K LN++ + + LAH P VV I SS + ++
Sbjct: 127 FVMPSVMVALGFIILFGKQGPFSWLNILYSWKAIVLAHIFYNYPVVVRIVSSAWERINPH 186
Query: 170 LEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL 218
EEA + G + F+ +TLPL P + +++ TF+ + + IL
Sbjct: 187 YEEAALSLGAKGFTLFRKVTLPLLFPSILLSSLMTFIFCFMSFSIPLIL 235
>gb|AAD33666.1|AF135398_3 (AF135398) putative integral membrane protein [Thermus brockianus]
Length = 276
Score = 78.8 bits (191), Expect = 7e-14
Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 20/280 (7%)
Query: 4 KTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYN-PHKVIPTSFTSQWVKTI 62
K F L + + + W L P+ + ++A + + + P + P Q + +
Sbjct: 3 KQRFWLALVLHVGLLPLALLW-LAPLWLMVVFATHPEEEIFRIPTPLHPGGAFGQNLANL 61
Query: 63 LFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPV 122
+ NS++V+ L + LL AGYA+A Y F+ K + IVA P V
Sbjct: 62 QADTNFLRALLNSVVVSGLYTLGGLLLSAMAGYALAVYQFRFKALVFSFIVATLTIPYFV 121
Query: 123 MAIPLVVLYIK-LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTR 181
+ IP +L + L L +T GV L A AL V +F + L +A V G
Sbjct: 122 VVIPQYILVARDLKLTNTFWGVILPFLANALG--VFYMRQVFLSLPSSLLDAARVDGAGE 179
Query: 182 WGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNR---TLP---AQILSIVAG 235
F I LPL P LAA A+ F+ +WN+ ++ +L L + T P ++ +
Sbjct: 180 VRIFFQIALPLVRPALAALALILFLNAWND-YLWPLLVLSQKEMYTAPVALGTLIGLTRV 238
Query: 236 AAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVTMWGIT 275
+ GG + +M +P +L F +RY V GIT
Sbjct: 239 SWGGI------MVGSALMTVPFLLLFLFLQRYFVA--GIT 270
>pir||T36640 probable ABC-type transport system membrane protein - Streptomyces
coelicolor >gi|5019355|emb|CAB44408.1| (AL078610)
putative ABC transporter membrane subunit [Streptomyces
coelicolor A3(2)]
Length = 283
Score = 78.8 bits (191), Expect = 7e-14
Identities = 43/163 (26%), Positives = 77/163 (46%), Gaps = 13/163 (7%)
Query: 62 ILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
+L + W ++ S+I A ++S ++G+P + +AR F G+ ++ + + P
Sbjct: 62 LLTSTEVWQALRLSLICATAATVVSMVIGVPLAWLLARVEFPGRGLVRALVTLPLVLPPV 121
Query: 122 VMAIPLVVL-------------YIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDK 168
V + L++ + + L T GV LA +A+PF+V+ D
Sbjct: 122 VGGVALLMALGRNGVVGQWLDSWFGITLPFTTTGVILAEAFVAMPFLVISVEGTLRAADP 181
Query: 169 ELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNE 211
EEA G +R+ AF+ +TLPL PG+AA A+ + + E
Sbjct: 182 RYEEAATTLGASRFTAFRRVTLPLIAPGIAAGAVLAWARALGE 224
>emb|CAC16437.1| (AL450165) putative sugar transport integral membrane protein
[Streptomyces coelicolor]
Length = 307
Score = 78.8 bits (191), Expect = 7e-14
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 6/195 (3%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+IVA + + + L AG+A A+ FKG++ + + ++ M P + +PL ++
Sbjct: 105 NSLIVAGVIALSTVLFATLAGFAFAKLRFKGRNALLMLVIGTMMVPPQLAVVPLFMMMAD 164
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L L V T ++ V + + + EL EAG V G F SI LP+A
Sbjct: 165 LGWSQQLPAVIFP-TLVSAVGVFFMRQYLTEALPDELVEAGRVDGAHSLRIFFSIVLPIA 223
Query: 194 LPGLAAAAMFTFVMSWNEVF-VASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFI 252
P +A M TFV +WN+ F +L + N T+P + + +AG A A +
Sbjct: 224 RPAMAVLFMITFVHAWNDFFWPFVVLDMTNPTVPVALTQL---SAGYVRDQSLIMAGALL 280
Query: 253 MILPAM-LFIFFARR 266
LP + +F+ F R+
Sbjct: 281 GTLPLLAMFVVFGRQ 295
>gb|AAK43168.1| Arabinose ABC transporter, permease [Sulfolobus solfataricus]
Length = 295
Score = 78.4 bits (190), Expect = 9e-14
Identities = 60/202 (29%), Positives = 94/202 (45%), Gaps = 15/202 (7%)
Query: 76 IIVAVLTIIISFLLGIPAGYAIARYVFKGKDTI----KLSIVALRMF-PIPVMAIPLVVL 130
++VA+ ++++S ++G Y +V K I SI+AL F PI + PL+ L
Sbjct: 87 LLVAIPSVLLSVVIGTMTAYFF--FVLSEKHGIISNGLFSIMALATFLPIETVTFPLIEL 144
Query: 131 YIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITL 190
LN+ +T +G+ A +P L+ S V K L E+ + G W +
Sbjct: 145 ETSLNVYNTYIGLIFAMLIFYVPTSALLMSIFLPVVPKYLIESARMDGAGDWTILWRVVF 204
Query: 191 PLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYY---KF 247
PL PG + +F F+ WNE F+ ILT P ++ VA AA A F
Sbjct: 205 PLIFPGFLSTLIFVFLQIWNEFFIPLILT----NTPNMLMLPVAARFYTAAYALIYNRSF 260
Query: 248 AAAFI-MILPAMLFIFFARRYL 268
AA I ++P ++FIF R ++
Sbjct: 261 AAGVISSLIPLIIFIFLGRYFI 282
>pir||G72357 sugar ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4981117|gb|AAD35683.1|AE001734_10
(AE001734) sugar ABC transporter, permease protein
[Thermotoga maritima]
Length = 277
Score = 78.4 bits (190), Expect = 9e-14
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 7/198 (3%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
N+ VA T ++ + A YA + VF G+D I +A M P V+ +P + K
Sbjct: 76 NTFFVATTTTLLEVVTASLAAYAFSWMVFPGRDFIFGLFLATMMIPGEVLLVPNFITISK 135
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L IDT + + F + + F + +EL +A + G + W + +PL+
Sbjct: 136 LGWIDTYYALIIPWIVSV--FAIFLLRQHFLTIPRELFDAAKIDGCSHWRFLWQMVVPLS 193
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILT--LKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
P + +A+ FV SWN I+T K RTLP + + A ++ AAA
Sbjct: 194 KPAVITSALLKFVGSWNAFLWVLIVTNSEKYRTLP---VGLQAFSSDVGTQYNLLMAAAT 250
Query: 252 IMILPAMLFIFFARRYLV 269
ILP ++ F ++Y +
Sbjct: 251 FSILPVVILFIFTQKYFI 268
>pir||H72282 maltose ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4981754|gb|AAD36277.1|AE001777_3
(AE001777) maltose ABC transporter, permease protein
[Thermotoga maritima]
Length = 823
Score = 78.4 bits (190), Expect = 9e-14
Identities = 60/209 (28%), Positives = 105/209 (49%), Gaps = 9/209 (4%)
Query: 69 WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLV 128
W + NS+IV+++ I+ + A Y +R F G+ ++++ ++MFP + I +
Sbjct: 608 WLWVLNSVIVSLIVAFITTTVCAIAAYPFSRMRFFGRRYGIMALLLIQMFPGVIFMIAIY 667
Query: 129 VL------YIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRW 182
L YI IDTL G+ A+ + + + + + + LEEA +V G TR+
Sbjct: 668 DLLNFMGKYIPFIGIDTLGGLIFAYLTN-IAYNMYLIKGFYDTIPTSLEEAAIVDGATRF 726
Query: 183 GAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAP 242
+F I +PLA P L + F+ ++NE VA I+ L+N L + A A G
Sbjct: 727 QSFYKIIIPLARPILTVVFLLVFIGTFNEYVVARII-LQNVRHYTYALGLQAFATGPYET 785
Query: 243 AYYKFAAAFIMILPAMLFIFFA-RRYLVT 270
+ F AA ++ + M+ +F + +RYLV+
Sbjct: 786 EWGLFTAAALLGMTPMVILFLSLQRYLVS 814
>pir||B83353 probable binding-protein-dependent maltose/mannitol transport
protein PA2340 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948376|gb|AAG05728.1|AE004660_4
(AE004660) probable binding-protein-dependent
maltose/mannitol transport protein [Pseudomonas
aeruginosa]
Length = 277
Score = 78.4 bits (190), Expect = 9e-14
Identities = 55/253 (21%), Positives = 122/253 (47%), Gaps = 11/253 (4%)
Query: 18 IFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSII 77
+F + W+L+ S + AF+T + + ++ + AW NS++
Sbjct: 26 LFFPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHINERSDYFAY---AW----NSLL 78
Query: 78 VAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI 137
++ ++ L+ +PA Y++A + + L +++ +M P + +P+ +L + L+
Sbjct: 79 ISSSATLLCMLVAVPAAYSMAFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQFGLL 138
Query: 138 DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGL 197
D+ L + + +T + LP VV + + F + ++ EA + G W + LP+A GL
Sbjct: 139 DSRLALIIVYTLINLPIVVWMVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIARGGL 198
Query: 198 AAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAA-AFIMILP 256
A+ + + ++ WNE F + LT + A + ++VA + + K +A + + P
Sbjct: 199 ASTLLLSLILCWNEAFWSLNLT---SSAAAPLTALVASYSSPEGLFWAKLSAVSTLACAP 255
Query: 257 AMLFIFFARRYLV 269
++F + +++ LV
Sbjct: 256 ILVFGWISQKQLV 268
>sp|P07622|MALG_ECOLI MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALG
>gi|72516|pir||MMECMG maltose transport inner membrane
protein malG - Escherichia coli
>gi|41951|emb|CAA26628.1| (X02871) put. mal G protein
(aa 1-296) [Escherichia coli] >gi|396367|gb|AAC43126.1|
(U00006) maltose transport inner membrane protein
[Escherichia coli] >gi|1790464|gb|AAC77002.1| (AE000476)
part of maltose permease, inner membrane [Escherichia
coli K12]
Length = 296
Score = 78.0 bits (189), Expect = 1e-13
Identities = 75/278 (26%), Positives = 125/278 (43%), Gaps = 31/278 (11%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFT-SQWVKTILFTLGAWSG-- 71
+ + +A I+ P+++ + A S + + +IP + W + F++ G
Sbjct: 17 HLLLLLFIAAIMFPLLM--VVAISLRQGNFATGSLIPEQISWDHWKLALGFSVEQADGRI 74
Query: 72 ----------IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP 121
+ NS+ VA ++ I L YA AR F GK T+ ++ +MFP
Sbjct: 75 TPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAV 134
Query: 122 VMAIPLVVLYIKLNL------IDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGM 175
+ + L L+ +L ++T GV A+ + V F +D LEEA
Sbjct: 135 LSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLG-GIALHVWTIKGYFETIDSSLEEAAA 193
Query: 176 VFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAG 235
+ G T W AF+ + LPL++P LA + +F+ + EV VAS+L R + + L++ G
Sbjct: 194 LDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL---RDVNSYTLAV--G 248
Query: 236 AAGGAAPAYY---KFAAAFIM-ILPAMLFIFFARRYLV 269
P Y FAAA +M LP + A+R+LV
Sbjct: 249 MQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLV 286
>pir||T35800 probable polyamine ABC-transporter integral membrane protein -
Streptomyces coelicolor >gi|3413307|emb|CAA20219.1|
(AL031225) putative polyamine ABC-transporter integral
memb rane protein [Streptomyces coelicolor A3(2)]
Length = 266
Score = 78.0 bits (189), Expect = 1e-13
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 8/240 (3%)
Query: 22 VAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVL 81
+A++L+P +V T+++F+ +N F++ K G + S+ +A+
Sbjct: 20 LAYLLLPNVVVTVFSFNKPNGRFNYEW---QQFSTDAWKDPCGVAGLCGSLSLSLQIALW 76
Query: 82 TIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLL 141
+ + LG +A+ RY F+ + I I P VMA L+ L++ +
Sbjct: 77 ATLGATALGTAIAFALVRYRFRARGAINSLIFLPMAMPEVVMAASLLTLFLNMGAQLGFW 136
Query: 142 GVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAA 201
+ +AH L FVV + +D LE+A + F +TLP+A PG+AA A
Sbjct: 137 TILIAHIMFCLSFVVTAVKARVMSMDPRLEQAAQDLYAGPFQTFVRVTLPIAAPGIAAGA 196
Query: 202 MFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFI 261
+ F +S+++ + + T P V G+A P + ++ A+LF+
Sbjct: 197 LLAFALSFDDFIITNFNAGSTVTFP----MFVWGSAQRGTPVQINVVGTAMFVI-AVLFV 251
>pir||H72450 probable maltose transport system permease protein APE2252 -
Aeropyrum pernix (strain K1) >gi|5105953|dbj|BAA81264.1|
(AP000064) 303aa long hypothetical maltose transport
system permease protein [Aeropyrum pernix]
Length = 303
Score = 78.0 bits (189), Expect = 1e-13
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 75 SIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVV-LYIK 133
++ VAV + + L+ + A Y+I+R FKG+ ++ L FP + L++ +Y+
Sbjct: 92 TLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFP----GVALIIGVYMI 147
Query: 134 LNLIDTLLGVA-----------LAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRW 182
+I +LGV LA A+ +P + + F + ELE + +V G +R
Sbjct: 148 FRIIGDVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRV 207
Query: 183 GAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKN---RTLPAQILSIVAGAAGG 239
+ SI +PL PG+AA +FTF+ W E F+ + LK +LP I IVA A
Sbjct: 208 RVWWSILVPLVKPGIAAVLIFTFLAGWEE-FIYFYVFLKPFGIDSLPTFIEEIVAAAENY 266
Query: 240 AAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
AA +LP ++F +R L+
Sbjct: 267 QLTII--AAAGTFYLLPTIVFFVLTQRLLL 294
>pir||A70034 maltodextrin transport system permease homolog yvdI - Bacillus
subtilis >gi|1945668|emb|CAB08038.1| (Z94043)
hypothetical protein [Bacillus subtilis]
>gi|2635972|emb|CAB15464.1| (Z99121) similar to
maltodextrin transport system permease [Bacillus
subtilis]
Length = 278
Score = 77.6 bits (188), Expect = 2e-13
Identities = 59/276 (21%), Positives = 114/276 (40%), Gaps = 13/276 (4%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWV- 59
MN TA ML KI Y F+ + I+ P++++ AF F+ W
Sbjct: 1 MNASTARMLNKICTYLFLTLLSIVIIYPLLITASSAFRV-----GNSAAFQLDFSGSWTL 55
Query: 60 ---KTILFTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALR 116
K + + N++++A+ +++ + AGY+ +RY F G+ + + ++
Sbjct: 56 DHFKRLFDETLYLNWYSNTLVIALSVMVLQVTIVTLAGYSYSRYRFAGRKKSLIFFLIIQ 115
Query: 117 MFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMV 176
M P VL + + +D + + +P + F V +E++EA +
Sbjct: 116 MVPTMAALTAFYVLAMLIGALDQYWFLTAIYIGGGIPMNTWLMKGYFDTVPREIDEAARI 175
Query: 177 FGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVA 234
G F SI LPL P LA A++ F+ + + + L + + T+ + S ++
Sbjct: 176 DGAGHLRIFASIVLPLVKPMLAVQALWAFMAPFGDYLLTKFLLRSPERLTIAVGLQSFIS 235
Query: 235 GAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLVT 270
+ A A + LP + FF ++ V+
Sbjct: 236 NPQQQKVALF--AAGAILAALPICVLFFFLQKNFVS 269
>pir||T37131 probable integral membrane permease - Streptomyces coelicolor
>gi|5738808|emb|CAB52982.1| (AL109950) putative integral
membrane permease [Streptomyces coelicolor A3(2)]
Length = 273
Score = 77.6 bits (188), Expect = 2e-13
Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 7/260 (2%)
Query: 12 IAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSG 71
IA A ++ V W+L+ + ++S + + + + W K LG G
Sbjct: 14 IAVLALLWLVPTWLLVVNALVPAGSYSGSPHWLPRDFGLFGNMSQAWDKA---NLGPALG 70
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
NS++ +V++ + ++ A +A K + I + + P+ V PL + Y
Sbjct: 71 --NSLLYSVVSAAAAAVIAGFAAFATIIMPVKRQALWFWVIYSGTLLPLQVFIRPLFLSY 128
Query: 132 IKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
+L DT G+ L +TA+A+PF + + + +E+ EA + G + W F I +P
Sbjct: 129 AHTSLYDTQTGLVLIYTAIAVPFAFFVMRNYALTLPREVVEAARMDGASWWRVFWQIHVP 188
Query: 192 LALPGLAAAAMFTFVMSWNE-VFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAA 250
L + A +F FV WN+ +F +++T +N L+ + G P A A
Sbjct: 189 LTRSAMIAVFVFQFVAVWNDLMFGITMVTSRNIRPVMAALADLQGNYSNVGPPIV-LAGA 247
Query: 251 FIMILPAMLFIFFARRYLVT 270
++ LP ++ F A+R+ V+
Sbjct: 248 LLVSLPTVVLFFSAQRFFVS 267
>emb|CAB55534.1| (AL117322) putative binding-protein-dependent transport protein
[Streptomyces coelicolor A3(2)]
Length = 296
Score = 77.6 bits (188), Expect = 2e-13
Identities = 53/207 (25%), Positives = 92/207 (43%), Gaps = 9/207 (4%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS++ + L ++ L AGYA AR F G+D + ++A M P +P VL
Sbjct: 91 NSVVYSGLIAVLQTLFCAMAGYAFARLRFPGRDLVFGVLIAALMVPPIFTVLPNFVLVKD 150
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L ++T +G+ +A + + PF V F V +E+EEA ++ G+ WG F + +P+
Sbjct: 151 LGWLNTFVGM-VAPSVLMTPFAVFFLRQFFLSVPREVEEAAILDGVGPWGIFWRVVMPMT 209
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYK-----FA 248
L + T V +W + L R ++L++ G +P A
Sbjct: 210 RGPLLTVGLTTTVWAWKDYLWP---LLSGRDEETRVLTVALGIFQQQSPNTQPDWTGLMA 266
Query: 249 AAFIMILPAMLFIFFARRYLVTMWGIT 275
+ + +LP ++ + R LV T
Sbjct: 267 GSALSVLPVLVLLILLGRRLVESLNFT 293
>sp|P18814|MALG_ENTAE MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALG
>gi|78247|pir||S05333 maltose transport inner membrane
protein malG - Enterobacter aerogenes
Length = 296
Score = 77.3 bits (187), Expect = 2e-13
Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 31/284 (10%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFT-SQWVKTILFTLG 67
L+ + + +A I+ P+++ + A S + + +IP + + W + F++
Sbjct: 11 LRLFTTHLLLLIFIAAIMFPLLM--VIAISLREGNFATGSLIPDTISWEHWRLALGFSVE 68
Query: 68 AWSG------------IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVAL 115
G + NSI VA +T I L YA AR F GK T+ ++
Sbjct: 69 HADGRVTPPPFPVLLWLWNSIKVAGITAIGIVALSTTCAYAFARMRFPGKATLLKGMLIF 128
Query: 116 RMFPIPVMAIPLVVLYIKLNL------IDTLLGVALAHTAMALPFVVLITSSIFAGVDKE 169
+MFP + + L L+ +L ++T GV A+ + V F +D
Sbjct: 129 QMFPAVLSLVALYALFDRLGQYLPFVGLNTHGGVIFAYMG-GIALHVWTIKGYFETIDGS 187
Query: 170 LEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI 229
LEEA + G T W AF+ + +PL++P LA + +F+ + EV VAS+L R + +
Sbjct: 188 LEEAAALDGATPWQAFRLVLVPLSVPILAVVFILSFIAAITEVPVASLLL---RDVNSYT 244
Query: 230 LSIVAGAAGGAAPAYYKF----AAAFIMILPAMLFIFFARRYLV 269
L++ G P Y + AAA + +P + A+R+LV
Sbjct: 245 LAV--GMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLV 286
>dbj|BAB04797.1| (AP001510) glycerol-3-phosphate ABC transporter (permease)
[Bacillus halodurans]
Length = 270
Score = 77.3 bits (187), Expect = 2e-13
Identities = 58/244 (23%), Positives = 106/244 (42%), Gaps = 3/244 (1%)
Query: 25 ILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTII 84
I PI+ + +F + A+ + P+S + + T+ ++NS IV++ +I
Sbjct: 20 IFFPIVYAFFVSFMSGAEVLS-RAFFPSSVNVDNYEKVFSTVPLLHYLQNSFIVSITVMI 78
Query: 85 ISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLIDTLLGVA 144
++ + Y A FKG+ + L ++ M P IP + KL +++ LG+
Sbjct: 79 GQLIVCSLSAYVFAFIPFKGRTFVFLLFISTLMIPWEAAMIPNFLTIQKLGWLNSYLGMT 138
Query: 145 LAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFT 204
+ A+A F + F + KEL EA V GL+ + F + LP A L ++
Sbjct: 139 VPFFALA--FGTFLLRQHFKTIPKELHEAAQVEGLSPFQFFYKVCLPYAKTSLVTLGIYG 196
Query: 205 FVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFIFFA 264
F+ +WN ++T +R QI A A ++I+P +L +F
Sbjct: 197 FLTTWNMYLWPLLVTTNDRKRTVQIGLKQLQTVEVATEWGVVMAGVVVVIIPTLLLLFLG 256
Query: 265 RRYL 268
++ L
Sbjct: 257 QKQL 260
>gb|AAC99627.1| (AF043654) BxlG [Streptomyces lividans]
Length = 272
Score = 76.9 bits (186), Expect = 3e-13
Identities = 74/255 (29%), Positives = 109/255 (42%), Gaps = 12/255 (4%)
Query: 22 VAWILI---PIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILFTLGAWSGIKNSII 77
+ W+++ P+ V T+ Y V +P SFT T F G N+++
Sbjct: 14 LVWLVLVGLPLYVMLAATLRTRQAYAENGPVSLPDSFTLDNF-TGAFDSGFGQYFFNTLV 72
Query: 78 VAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAI--PLVVLYIKLN 135
V I I LL P YAI R +G+ T + + L IP A+ P+ L +
Sbjct: 73 VTACVIGIVLLLVPPLAYAIVRS--RGRATSAIFRLFLLGLAIPAQAVIVPMFYLISEAG 130
Query: 136 LIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALP 195
L D LLGV L A LP LI S + EL EA + G + F + +PL+
Sbjct: 131 LYDNLLGVILPRAAFCLPMSALILSGSMRDISPELYEAMAMDGASLRRMFFQLVMPLSRG 190
Query: 196 GLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAAGGAAPAYYKFAAAFIMI 254
GL+ +F+ + +WN +LT + T + L A G P A + +
Sbjct: 191 GLSTIVVFSALQAWNGFLFPLVLTQSDFTKVVTLGLYNFQTAHGIDIPGL--LGAVVLSM 248
Query: 255 LPAMLFIFFARRYLV 269
+P +L FARR LV
Sbjct: 249 VPILLVYLFARRALV 263
>pir||B75208 transmembrane sugar transport protein PAB2231 - Pyrococcus abyssi
(strain Orsay) >gi|5457622|emb|CAB49113.1| (AJ248283)
TRANSMEMBRANE SUGAR TRANSPORT PROTEIN [Pyrococcus
abyssi]
Length = 289
Score = 76.5 bits (185), Expect = 3e-13
Identities = 55/205 (26%), Positives = 100/205 (47%), Gaps = 11/205 (5%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
I N++IVA+ + L+ + +GYA++R FKG+ + +S++ L FP + + + +LY
Sbjct: 80 ILNTLIVALGVSGLVTLISVMSGYALSRMDFKGRKILIVSLMLLHAFPGVALIVGVYLLY 139
Query: 132 I-------KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGA 184
L + + + V A A+ +P V + F V E E +G++ G +R
Sbjct: 140 RISFSQEPSLVRLYSFIYVIFARAALEVPMSVWLMKGFFDTVPWEFEWSGIIDGASRITV 199
Query: 185 FKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAY 244
++ I LPL PG+ A A+F+F+ W ++ L ++TL I A
Sbjct: 200 WRKIMLPLIKPGILAVALFSFLAGWQDIIYVRTF-LIDQTLAT---FIEANIEAEYTHMP 255
Query: 245 YKFAAAFIMILPAMLFIFFARRYLV 269
AA + +LP ++F A++ L+
Sbjct: 256 MIAAAGTLYLLPTIIFFLTAQQLLL 280
>pir||B71243 probable maltose transport system permease protein - Pyrococcus
horikoshii >gi|3256590|dbj|BAA29273.1| (AP000001) 289aa
long hypothetical maltose transport system permease
protein [Pyrococcus horikoshii]
Length = 289
Score = 76.1 bits (184), Expect = 4e-13
Identities = 65/271 (23%), Positives = 120/271 (43%), Gaps = 28/271 (10%)
Query: 18 IFTVVAWILIPIIVSTLYAFSTKA----DYYNPHKVIPTSFTSQWVKTILFTLGAWSGIK 73
IF +LI + L +FST D+ + H + W+ L G++
Sbjct: 19 IFLASLPLLIGFTLLMLSSFSTTMITNFDFKDFHVTL-----ENWINVFRGKLAITGGVR 73
Query: 74 --------NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAI 125
N++IVA+ + ++ + +GYA++R FKG+ + S++ L FP + +
Sbjct: 74 VNMGKIFLNTLIVALGVSGLVTIISVMSGYALSRMDFKGRKLMITSLMLLHAFPGVALIV 133
Query: 126 PLVVLYI-------KLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFG 178
+ +LY L + + + V A A+ +P V + F + E E +G++ G
Sbjct: 134 GVYLLYRISFPGEQSLVRLYSFIYVIFARAALEVPMSVWLMKGFFDNIPWEFEWSGIIDG 193
Query: 179 LTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAG 238
+R ++ I LPL PG+ A A+F+F+ W ++ L ++TL I A
Sbjct: 194 ASRITVWRKIMLPLIKPGILAVALFSFLAGWQDIIYVRTF-LIDQTLAT---FIEANIEA 249
Query: 239 GAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
AA + +LP ++F A++ L+
Sbjct: 250 EYTHMPMIAAAGTLYLLPTIIFFLTAQQLLL 280
>gb|AAB67296.1| (U59485) AttB [Agrobacterium tumefaciens]
Length = 285
Score = 75.7 bits (183), Expect = 6e-13
Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 4/203 (1%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSI 76
F+F + ++++P + + + + P P T +W + S S+
Sbjct: 37 FVFLITVFLILPTFLVVPMSLNDGSYLAFP----PQGLTLKWYRAYFSDPDWMSATLFSL 92
Query: 77 IVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNL 136
VA T I++ +G A A+A+ K ++ + + P V+ + L +++ +
Sbjct: 93 QVAFATAIVATTIGTTAALALAKSRLPFKGLLQSLALGPMIVPHVVLGVSLYLVFSPWRV 152
Query: 137 IDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPG 196
T G LAHT +A+P+V+++ + D LE A + G R+ +F + LP P
Sbjct: 153 TGTFAGFVLAHTVLAIPYVMIVVGAAVQKFDPSLELAALNCGANRFQSFFLVMLPNIGPS 212
Query: 197 LAAAAMFTFVMSWNEVFVASILT 219
+AAA++F F+ S+++ V+ ++
Sbjct: 213 VAAASVFAFLASFDDATVSFFIS 235
>dbj|BAA28361.1| (D85027) integral membrane protein [Thermus sp. A4]
Length = 247
Score = 75.7 bits (183), Expect = 6e-13
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 21/252 (8%)
Query: 34 LYAFSTKAD---YYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSIIVAVLTIIISFLLG 90
++ FST + + P ++P + + ++ + + + NS++V+ L + LL
Sbjct: 1 MWVFSTHPEQEIFRVPTPLLPGNAFWENLRNLQADTDFFRALWNSLVVSGLYTVGGLLLS 60
Query: 91 IPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK-LNLIDTLLGVALAHTA 149
AGYA+A Y F+G+ IVA P V+ IP +L + L L +T GV L A
Sbjct: 61 ALAGYALAVYRFRGQALFFSLIVATLTIPYFVVVIPQYILVARELKLTNTYWGVVLPFLA 120
Query: 150 MALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSW 209
AL V +F + L +A V G + F I LP+ P LAA A+ F+ +W
Sbjct: 121 NALG--VFYMRQVFLSLPPSLLDAARVDGASEARIFFRIALPVVTPSLAALALILFLTAW 178
Query: 210 NEVFVASILTLKNR---TLP---AQILSIVAGAAGGAAPAYYKFAAAFIMILPAMLFIFF 263
N+ ++ +L L + T P ++ + + GG + +M P ++ F
Sbjct: 179 ND-YLWPLLVLSQKEMYTAPVALGTLIGLTRVSWGGI------MVGSVLMTAPFVVLFLF 231
Query: 264 ARRYLVTMWGIT 275
+RY V GIT
Sbjct: 232 LQRYFVA--GIT 241
>emb|CAB11327.1| (Z98604) possible transport protein [Mycobacterium leprae]
Length = 283
Score = 74.9 bits (181), Expect = 1e-12
Identities = 71/273 (26%), Positives = 118/273 (43%), Gaps = 13/273 (4%)
Query: 8 MLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK-TILFTL 66
+L+ + Y + T +AW + IV L K ++P QW T +F L
Sbjct: 15 VLRAVVVYIAL-TGIAWCALFPIVWALSGSLKKEGEIREPTLLPAH--PQWSNYTEVFDL 71
Query: 67 -GAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAI 125
W N+++ A + AGYA AR F+G+D + + + M P+ V I
Sbjct: 72 IPFWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTII 131
Query: 126 PLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAF 185
P +L L DT + + F + F + +LEEA ++ G + W +
Sbjct: 132 PQFILMRVLGWTDTPWAM-IVPGLFGSAFGTYLMRQFFRTLPSDLEEAAILDGCSPWQIY 190
Query: 186 KSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIV--AGAAGGAAPA 243
+ LP A P + A+ T+V WN+ F+ +L ++ +L L +V G G P
Sbjct: 191 WRVLLPHAKPAVGVLAVLTWVNVWND-FLWPLLMIQRNSLATLTLGLVRMRGEYGTCWPV 249
Query: 244 YYKFAAAFIMILPAMLFIFFARRYLVTMWGITL 276
A + ++ILP ++ A+R V GIT+
Sbjct: 250 I--MATSMLIILPLVIIYTIAQRAFVR--GITV 278
>emb|CAB70939.1| (AL137778) putative transport system inner membrane protein
[Streptomyces coelicolor A3(2)]
Length = 303
Score = 74.9 bits (181), Expect = 1e-12
Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 6/199 (3%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
NS+ +AV ++I + YA A+ F G++ + ++ + P V+ IP VL+
Sbjct: 98 NSLFLAVGSVIGIVVSCSLTAYAFAKIRFAGRNLLFTLMIGTLLLPYHVLLIPQYVLFRN 157
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L++I+T + L F V + + +EL+EA + G + SI LPL
Sbjct: 158 LDMINTYTPLLLGKYLATEAFFVFLMVQFMRNLPRELDEAARLDGCGHLRIYWSIVLPLC 217
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLK---NRTLPAQILSIVAGAAGGAAPAYYKFAAA 250
P L +A+FTF+ SWN+ F+ ++ L T+ + V G A A +
Sbjct: 218 RPALITSAIFTFINSWND-FMGPLIYLNEPGKYTISLGLKMFV--DQEGLANYGGMIAMS 274
Query: 251 FIMILPAMLFIFFARRYLV 269
+ +LP + F +RYL+
Sbjct: 275 LVALLPVLAFFLAFQRYLI 293
>emb|CAC10106.1| (AL442165) putative cellobiose transport permease [Streptomyces
coelicolor]
Length = 303
Score = 74.9 bits (181), Expect = 1e-12
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 5/195 (2%)
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
N+ IVA ++ L AG+A A+ F+G++ + L +V M P + IPL ++ K
Sbjct: 100 NTTIVAGISACTIVFLSTVAGFAFAKLRFRGRNALMLIVVGTMMVPPQLSIIPLYMMVAK 159
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L+ D L V L A V + + + E+ EA V G + W + P A
Sbjct: 160 LDWSDQLQAVILPSLVNAFG-VFFMRQYLLQALPDEIIEAARVDGASSWRVMWHVVFPAA 218
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAP-AYYKFAAAFI 252
P +A M FV SWN+ ++ +N + Q+ +AG G P A A +
Sbjct: 219 RPAMAVLGMLMFVQSWNDFLWPFLVLTQNGSPTVQV--ALAGLGRGYTPDQSLIMAGALL 276
Query: 253 MILPAML-FIFFARR 266
LP +L F F ++
Sbjct: 277 GTLPLLLVFAIFGKQ 291
>pir||G70179 spermidine/putrescine ABC transporter, permease protein (potC)
homolog - Lyme disease spirochete
>gi|2688564|gb|AAB91527.1| (AE001165)
spermidine/putrescine ABC transporter, permease protein
(potC) [Borrelia burgdorferi]
Length = 263
Score = 74.5 bits (180), Expect = 1e-12
Identities = 61/246 (24%), Positives = 114/246 (45%), Gaps = 8/246 (3%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKNSI 76
F+F ++++I +PII+ +Y+F++ + I F+ +W K I + S I N+I
Sbjct: 9 FLFLILSFIYLPIIILIIYSFNSGDSGF-----IWQGFSLKWYKEIFASSQIKSAIFNTI 63
Query: 77 IVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMF-PIPVMAIPLVVLYIKLN 135
++A+++ + S ++GI YAI + K TI LS+ + + P V I L+ Y +
Sbjct: 64 LIAIISSLTSVVIGIIGAYAIYKSENKKLKTILLSVNKITIINPDIVTGISLMTFYSAIK 123
Query: 136 LIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLALP 195
+ + ++H + P+VV+I + K + +A G + F +I P
Sbjct: 124 MQLGFSTMLISHIIFSTPYVVIIILPKLYSLPKNIIDAAKDLGASEIQIFFNIIYPEIAG 183
Query: 196 GLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFIMIL 255
+A A+ F +S ++ F+ S T IL I + G P +A +
Sbjct: 184 SIATGALIAFTLSIDD-FLISFFTTGQGFNNLSIL-INSLTKRGIKPVINAISAILFFTI 241
Query: 256 PAMLFI 261
++LFI
Sbjct: 242 LSLLFI 247
>pir||E72331 hypothetical protein TM0812 - Thermotoga maritima (strain MSB8)
>gi|4981342|gb|AAD35894.1|AE001748_10 (AE001748) sugar
ABC transporter, permease protein, putative [Thermotoga
maritima]
Length = 271
Score = 74.5 bits (180), Expect = 1e-12
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 13/212 (6%)
Query: 66 LGAWSGIK------NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFP 119
+GAW +K N+II+A +++ L + Y +AR FKGK + I+ M P
Sbjct: 56 VGAWKTVKLGNYYLNTIIIAGFGTLLNVLFSLMVAYPLARIDFKGKQLVLFLILLPMMIP 115
Query: 120 IPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGL 179
+ I + KL L++T GV L F + + + + K E+A + G
Sbjct: 116 VQNTLIVNYLTLRKLGLLNTYTGVILPQAVTI--FGIFMMRQAYLSIPKSFEDAARIDGA 173
Query: 180 TRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGG 239
+ I PL P +A +F + W+ I+ + P LS+
Sbjct: 174 GELYIWWKIITPLIKPDIATLVVFQVITWWDNFLWPLIVLSDSNKYP---LSVALVYLNS 230
Query: 240 AAPAYYKFAAAFIM--ILPAMLFIFFARRYLV 269
+++ AA I+ ILP +L FA+RY++
Sbjct: 231 TFQVNFRYTAAGIVLAILPVVLLFIFAQRYII 262
>emb|CAA47163.1| (X66596) lacG [Agrobacterium radiobacter]
Length = 272
Score = 74.1 bits (179), Expect = 2e-12
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 69 WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLV 128
W+ +K +++ LT+++S L AGY + K ++ + I+ M P + IPL
Sbjct: 71 WNSVKIALVGTALTLLVSSL----AGYGFEMFRSKLRERVYTVILLTLMVPFAALMIPLF 126
Query: 129 VLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
+L + L++T + + L A A F++ EL +A V GL W F I
Sbjct: 127 MLMGQAGLLNTHIAIMLPMIASA--FIIFYFRQASKAFPTELRDAAKVDGLKEWQIFFYI 184
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFA 248
+P+ AAA + F+++WN I+ N T I +V+ A +P Y
Sbjct: 185 YVPVMRSTYAAAFVIVFMLNWNNYLWPLIVLQSNDT--KTITLVVSSLASAYSPEYGTVM 242
Query: 249 AAFIMILPAMLFIFFA--RRYLVTMWG 273
I+ L +FFA R+++ M G
Sbjct: 243 IGTILATLPTLLVFFAMQRQFVQGMLG 269
>sp|P29824|LACG_AGRRD LACTOSE TRANSPORT SYSTEM PERMEASE PROTEIN LACG
>gi|418703|pir||MMAGCG membrane protein lacG -
Agrobacterium radiobacter
Length = 273
Score = 74.1 bits (179), Expect = 2e-12
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 69 WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLV 128
W+ +K +++ LT+++S L AGY + K ++ + I+ M P + IPL
Sbjct: 72 WNSVKIALVGTALTLLVSSL----AGYGFEMFRSKLRERVYTVILLTLMVPFAALMIPLF 127
Query: 129 VLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
+L + L++T + + L A A F++ EL +A V GL W F I
Sbjct: 128 MLMGQAGLLNTHIAIMLPMIASA--FIIFYFRQASKAFPTELRDAAKVDGLKEWQIFFYI 185
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFA 248
+P+ AAA + F+++WN I+ N T I +V+ A +P Y
Sbjct: 186 YVPVMRSTYAAAFVIVFMLNWNNYLWPLIVLQSNDT--KTITLVVSSLASAYSPEYGTVM 243
Query: 249 AAFIMILPAMLFIFFA--RRYLVTMWG 273
I+ L +FFA R+++ M G
Sbjct: 244 IGTILATLPTLLVFFAMQRQFVQGMLG 270
>pir||C72261 spermidine/putrescine ABC transporter, permease protein -
Thermotoga maritima (strain MSB8)
>gi|4981939|gb|AAD36448.1|AE001791_10 (AE001791)
spermidine/putrescine ABC transporter, permease protein
[Thermotoga maritima]
Length = 256
Score = 74.1 bits (179), Expect = 2e-12
Identities = 69/263 (26%), Positives = 120/263 (45%), Gaps = 27/263 (10%)
Query: 17 FIFTVV----AWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFT--LGAWS 70
FI T+V + +P+ + L +F++ + + FT +W LFT W
Sbjct: 6 FIKTIVILTMVFFYLPLFIVVLMSFNSAKS------PVWSGFTLKWYLE-LFTREYSVWH 58
Query: 71 GIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPV----MAIP 126
+NS+IVA+++ +S +G A +F K ++ SI L P V + I
Sbjct: 59 AFRNSLIVAIVSSTVSTAIGT----LTAIELFWKKSRLENSIWFLTYLPFVVPDVIIGIS 114
Query: 127 LVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFK 186
L++L+ + L + LAH ++P+ ++I S DK + EA G T + F
Sbjct: 115 LLLLFSMFKVQLGLFTITLAHITFSIPYTMMIVHSRLQDFDKSIIEAAYDLGSTDFQVFY 174
Query: 187 SITLPLALPGLAAAAMFTFVMSWNE-VFVASILTLKNRTLPAQILSIVAGAAGGAAPAYY 245
+ +P +PG+ AA + F +S ++ V + + TLP QI S++ G +P
Sbjct: 175 RVIIPNLVPGIVAAFLLAFTLSIDDFVITFFVAGPGSTTLPIQIYSMI---RFGISPTVN 231
Query: 246 KFAAAFIMILPAMLFIFFARRYL 268
A + MI +L F RR++
Sbjct: 232 --AISTFMIAGTILIGFVLRRFV 252
>dbj|BAB05585.1| (AP001513) sugar transport system (permease) (binding protein
dependent transporter) [Bacillus halodurans]
Length = 285
Score = 74.1 bits (179), Expect = 2e-12
Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 21/271 (7%)
Query: 9 LKKIAFYAFIFTVVAWILIPIIVSTLYAFSTK-ADYYNPHKVIPTSFTSQWVKTILFTLG 67
+KKI Y F+ + +P + + T A + P + IP T + +
Sbjct: 16 IKKILSYTFLMIGGLIMAVPFLWMLSTSLKTPGAIFAMPPEFIPREITFENYIRVFTEAD 75
Query: 68 AWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPL 127
G +N++I+ + T I A +A A+ F G+D + +++A M P V +P
Sbjct: 76 LLLGFRNTMIIIIPTTAIGIFTSSLAAFAFAKLNFPGRDKLFFALIATMMLPGIVTLVPQ 135
Query: 128 VVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKS 187
+L+ +L +DT + + V F + +L +A + GL+ +G F+
Sbjct: 136 FILFRELGWLDTFKPLMIP-GFFGAAMTVFFLRQFFMTIPNDLIDAAKIDGLSFFGIFRK 194
Query: 188 ITLPLALPGLAAAAMFTFVMSWNEVFVASILTL---KNRTLPAQILSIVAGAAGGAAPAY 244
I +PLA P + + + +N+ F+ ++ L +N TL + S Y
Sbjct: 195 IMVPLAKPAIVTQVILGLLAGYND-FMGPLIYLNSPENFTLQLVLASF---------RGY 244
Query: 245 YK------FAAAFIMILPAMLFIFFARRYLV 269
Y A + I ++P ++ FFA++ +
Sbjct: 245 YTSEWGLIMAGSVIALIPTLVAFFFAQKQFI 275
>emb|CAB56685.1| (AL121596) putative binding-protein dependent transport protein
[Streptomyces coelicolor A3(2)]
Length = 275
Score = 73.4 bits (177), Expect = 3e-12
Identities = 45/204 (22%), Positives = 88/204 (43%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGIKN 74
+ ++T +++P+ AF + + + P+S +T + + N
Sbjct: 11 HILVWTYAVLLVVPLYYFLASAFKSNDEIFAHPFAPPSSLGLGNFRTAFESADLGLAVVN 70
Query: 75 SIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKL 134
S +V V ++ ++ LL IPA +A+AR + ++ + P P +L
Sbjct: 71 SALVTVFSLALTLLLAIPASFALARSTGRLAGVVEKVFSLGFLIPTFAALFPTFLLAAAT 130
Query: 135 NLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLAL 194
L T + + L A ALP V+I + E+EEA + G + + + + P+ L
Sbjct: 131 GLFHTRIFMVLFLPATALPLSVVILVQFMRTIPPEMEEAARLDGASTFAVLRHVYTPMCL 190
Query: 195 PGLAAAAMFTFVMSWNEVFVASIL 218
PG+A + F+ WNE + ++
Sbjct: 191 PGIATVLLLNFLTFWNEYLYSLVI 214
>emb|CAA08866.1| (AJ009832) putative transmembrane sugar transport protein
[Thermotoga neapolitana]
Length = 498
Score = 73.0 bits (176), Expect = 4e-12
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 19/210 (9%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
+ NS+IVA L II+ + A Y +R F G+ ++++ ++MFP + +V +Y
Sbjct: 286 VANSVIVAGLVSIITTAVCALAAYPFSRMRFWGRQYGIMALLLIQMFPAIMY---MVAIY 342
Query: 132 IKLNLI---------DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRW 182
L LI D+L G+ A+ + + + + + + LEEA M+ G TR+
Sbjct: 343 GLLKLIGQFLPFLGLDSLGGLIFAYLGN-IAYNMYLIKGFYDTIPSSLEEAAMIDGATRF 401
Query: 183 GAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVAGAAGGA 240
F I +PLALP L+ + TF+ ++NE +A I+ +KN T L + + G
Sbjct: 402 QTFYKIVVPLALPILSVIVILTFIGTFNEFVLARIILQDVKNYT---YALGLWTFSTGAY 458
Query: 241 APAYYKFAAAFIMILPAMLFIFFA-RRYLV 269
+ F AA ++ + M+ +F + ++Y+V
Sbjct: 459 ETEWGLFTAAALLGMTPMVILFLSLQKYIV 488
>pir||F75124 abc transporter integral membrane protein PAB0543 - Pyrococcus
abyssi (strain Orsay) >gi|5458222|emb|CAB49711.1|
(AJ248285) ABC TRANSPORTER INTEGRAL MEMBRANE PROTEIN
[Pyrococcus abyssi]
Length = 533
Score = 72.2 bits (174), Expect = 7e-12
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 16/253 (6%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIP---TSFTSQWVKTILFTLGAWSGIK 73
FIF +V I+S L+A KA +N + +F+ ++ +F + I
Sbjct: 287 FIFVLV------FIISPLFAVIYKALMFNDRLSLEWFRRAFSEEY--NPMFGTSSLMTIL 338
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
N++ + ++I+ +L +P IAR F+GK +++ ++ + ++ +
Sbjct: 339 NTLKFGFIAVLIAVILALPLARVIAREKFRGKGLLEVFATLPLASSSVMLGLGYLLAFRD 398
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
+L L +ALAH +A PF S + K L EA + G + +F + LPL
Sbjct: 399 TSLYGHWLLIALAHATVAYPFAFRTISISIRKIKKNLLEASLTLGASEALSFLKVELPLI 458
Query: 194 LPGLAAAAMFTFVMSWNEVFVASIL-TLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAFI 252
+ G+ A++F+F +S E+ +L + +N TL I ++ G A A + +
Sbjct: 459 VNGILVASIFSFAISAAELATTYMLASPENTTLTLAIYKFISSRQFGPASA----LSVVL 514
Query: 253 MILPAMLFIFFAR 265
MI+ + F+ R
Sbjct: 515 MIISMVSFLLIER 527
Score = 69.1 bits (166), Expect = 6e-11
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 75 SIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK- 133
+ + A+L+ + + +GIP Y + Y F GK ++ I + P ++A+ ++++ K
Sbjct: 60 TFVQALLSTLATLAVGIPGAYVFSHYDFPGKRFLRSLITVPFVMPSVIVALGFIIIFGKS 119
Query: 134 -----LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
L ++ + LAH P VV + +S + ++ +EA M G + F+ I
Sbjct: 120 GPLGGLGILYNWKAIILAHVFYNYPVVVRVIASSWERINPHYKEAAMSLGAKGFVVFRKI 179
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVASIL 218
TLPL LP + A++ TF + + IL
Sbjct: 180 TLPLLLPSILVASLLTFTFCFMSFSIPLIL 209
>pir||E81179 spermidine/putrescine ABC transporter, permease protein NMB0612
[imported] - Neisseria meningitidis (group B strain
MD58) >gi|7225842|gb|AAF41039.1| (AE002416)
spermidine/putrescine ABC transporter, permease protein
[Neisseria meningitidis MC58]
Length = 295
Score = 72.2 bits (174), Expect = 7e-12
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 24/227 (10%)
Query: 22 VAWILIPIIVSTLYAFSTKADYYNPHKVIPT--SFTSQWVKTILFTLGAWSGIKNSIIVA 79
+A++ IP++V +Y+F N K++ F+++W +L S+ +A
Sbjct: 18 LAFLYIPLVVLVIYSF-------NESKLVTVWGGFSTKWYGALLENDTILEAAWLSLRIA 70
Query: 80 VLTIIISFLLGIPAGYAIARYV-FKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI- 137
V++ + + +LG AGYA+AR F+G I A + P + + +++L I++ +
Sbjct: 71 VVSSLAAVVLGTLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSMLLLIIQVQIFL 130
Query: 138 ------------DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAF 185
+ L HT + + ++ ++ S +D+ LEEA M G F
Sbjct: 131 QGSEWLQHLYFDRGFFTIFLGHTTLCMAYITVVIRSRLVELDQSLEEAAMDLGARPLKIF 190
Query: 186 KSITLPLALPGLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILS 231
ITLPL P +A+ + +S +++ + S L+ + TLP I S
Sbjct: 191 FVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFS 237
>dbj|BAB05943.1| (AP001514) maltose transport system (permease) [Bacillus
halodurans]
Length = 276
Score = 72.2 bits (174), Expect = 7e-12
Identities = 59/258 (22%), Positives = 111/258 (42%), Gaps = 8/258 (3%)
Query: 18 IFTVVAWIL-----IPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSGI 72
+ TV+A ++ IP + A + D+ + +P FT + T +
Sbjct: 11 LLTVLAAVITLLHFIPFYILLTMALKERGDF-SSRWALPDYFTLENFATAWERANLGNAF 69
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
N+ ++ ++ L G A Y +AR K + L VA+ + P +PL + +
Sbjct: 70 INTGLITAGAAVLLILFGSMAAYPLARRETKLNRFVLLFFVAIMVVPPLTALVPLYQMVV 129
Query: 133 KLNLIDTLLGVALAHTAMALPFVV-LITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLP 191
L +++T L + A LP + L I + + KELEEA + G F I P
Sbjct: 130 NLGMLNTRTIAILNNLAAFLPLTIFLYAGFIRSTIPKELEEAAKIDGCNTISIFFRIVFP 189
Query: 192 LALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSIVAGAAGGAAPAYYKFAAAF 251
L P A+ + + V WN+ + +I L+++ + +++ + + AAAF
Sbjct: 190 LLKPVTASVLIISCVFIWND-YQFAIFFLQSKDVHTLTVALASFFGENQSNLNLVAAAAF 248
Query: 252 IMILPAMLFIFFARRYLV 269
+ +LP + F ++Y +
Sbjct: 249 MAMLPMTILFLFLQKYFI 266
>pir||H72205 maltose ABC transporter, permease protein - Thermotoga maritima
(strain MSB8) >gi|4982419|gb|AAD36899.1|AE001820_8
(AE001820) maltose ABC transporter, permease protein
[Thermotoga maritima]
Length = 833
Score = 71.8 bits (173), Expect = 9e-12
Identities = 58/210 (27%), Positives = 105/210 (49%), Gaps = 19/210 (9%)
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLY 131
+ NS+IVA L +I+ + A Y +R F G+ ++++ ++MFP + +V +Y
Sbjct: 621 VMNSVIVAGLVSLITTAVCALAAYPFSRMRFWGRQYGIMALLLIQMFPAIMY---MVAIY 677
Query: 132 IKLNLI---------DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRW 182
L LI D+L G+ A+ + + + + + + LEEA M+ G TR+
Sbjct: 678 GLLKLIGQFLPFLGLDSLGGLIFAYLGN-IAYNMYLIKGFYDTIPSSLEEAAMIDGATRF 736
Query: 183 GAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL--TLKNRTLPAQILSIVAGAAGGA 240
F I +PLALP L + TF+ ++NE +A I+ +KN T L + + G
Sbjct: 737 QTFYKIVVPLALPILTVIVILTFIGTFNEFVLARIILQDVKNYT---YALGLWTFSTGAY 793
Query: 241 APAYYKFAAAFIMILPAMLFIFFA-RRYLV 269
+ F AA ++ + M+ +F + ++Y+V
Sbjct: 794 ETEWGLFTAAALLGMTPMVILFLSLQKYIV 823
>pir||A81927 probable polyamine permease inner membrane protein NMA0818
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7379537|emb|CAB84100.1| (AL162754) putative
polyamine permease inner membrane protein [Neisseria
meningitidis Z2491]
Length = 295
Score = 71.8 bits (173), Expect = 9e-12
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 24/227 (10%)
Query: 22 VAWILIPIIVSTLYAFSTKADYYNPHKVIPT--SFTSQWVKTILFTLGAWSGIKNSIIVA 79
+A++ IP++V +Y+F N K++ F+++W +L S+ +A
Sbjct: 18 LAFLYIPLVVLVVYSF-------NESKLVTVWGGFSTRWYGALLENDTILEAAWLSLRIA 70
Query: 80 VLTIIISFLLGIPAGYAIARYV-FKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLNLI- 137
V++ + + +LG AGYA+AR F+G I A + P + + +++L I++ +
Sbjct: 71 VVSSLAAVVLGTLAGYAMARIKRFRGSTLFAGMISAPMVMPDVITGLSMLLLIIQVQIFL 130
Query: 138 ------------DTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAF 185
+ L HT + + ++ ++ S +D+ LEEA M G F
Sbjct: 131 QGSEWLQHLYFDRGFFTIFLGHTTLCMAYITVVIRSRLVELDQSLEEAAMDLGARPLKIF 190
Query: 186 KSITLPLALPGLAAAAMFTFVMSWNEVFVASILT-LKNRTLPAQILS 231
ITLPL P +A+ + +S +++ + S L+ + TLP I S
Sbjct: 191 FVITLPLIAPAIASGFLLGITLSLDDLVITSFLSGPGSSTLPQVIFS 237
>gb|AAB95373.1| (U75349) putative permease BitE [Brachyspira hyodysenteriae]
Length = 277
Score = 71.0 bits (171), Expect = 1e-11
Identities = 60/277 (21%), Positives = 116/277 (41%), Gaps = 29/277 (10%)
Query: 11 KIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGA-- 68
KI F+ +I ++A I +V L++ + + +P T W +
Sbjct: 6 KIDFWTYITLIIAVIFALFLVYPLFSLFISS-FKDPE-------TGAWTLDNFLRFFSRK 57
Query: 69 --WSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIP 126
+ + NS V + I++ ++G P Y ++ Y KGK +++ I+ M P + A
Sbjct: 58 YYYQALVNSFSVTICVTILAIVIGTPMAYFMSVYKIKGKTFLEILIIISMMSPAFIGAYS 117
Query: 127 LVVLYIKLNLIDTLL--------------GVALAHTAMALPFVVLITSSIFAGVDKELEE 172
++L + ++ G+ L T PF+ + S + +D L E
Sbjct: 118 WILLLGRSGVVTKFFAGFGISTPTIYGFGGILLVFTLKLYPFIFMYVSGALSKIDVSLME 177
Query: 173 AGMVFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQILSI 232
A G + + +I +PL P + A ++ F+ + + ++ RT+P I S
Sbjct: 178 AAESLGCSPFKKVVTIAMPLITPTILAGSLLVFMNALADFGTPMLIGEGYRTMPTMIYSE 237
Query: 233 VAGAAGGAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
GG A + A+ ++ + AM+FI A++Y V
Sbjct: 238 FVSEVGGNA-NFSASMASIMVFITAMMFI--AQKYFV 271
>sp|P53561|YTCP_BACSU PROBABLE ABC TRANSPORTER PERMEASE PROTEIN IN OPUD-BIOI INTERGENIC
REGION (ORF3) >gi|7442802|pir||G69989 ABC transporter
(permease) homolog ytcP - Bacillus subtilis
>gi|2293190|gb|AAC00268.1| (AF008220) transporter
[Bacillus subtilis] >gi|2635501|emb|CAB14995.1| (Z99119)
similar to ABC transporter (permease) [Bacillus
subtilis]
Length = 286
Score = 70.6 bits (170), Expect = 2e-11
Identities = 64/269 (23%), Positives = 117/269 (42%), Gaps = 21/269 (7%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILFTLGAWSGIK 73
Y F+ ++P I +F+T + + + IPT+F+ + I T + +
Sbjct: 11 YGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLL 70
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
S+ V V+ +S L Y ++R G+ + +V +F + IP ++
Sbjct: 71 VSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGM--IPTFLVVKS 128
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L L+D+ + L A F ++I + F + LEE+ + G G F I LPL+
Sbjct: 129 LGLLDSYWALILPTAINA--FNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLS 186
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLKN------RTLPAQILSIVAGAAG-------GA 240
LP +A ++F V WN ++ +IL L + + L QI+ + +G G G+
Sbjct: 187 LPAIATISLFYAVTYWN-TYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGSGS 245
Query: 241 AP--AYYKFAAAFIMILPAMLFIFFARRY 267
P K A + +P +L F +++
Sbjct: 246 PPPEQTIKMAVIVVATIPVLLVYPFIQKH 274
>pir||T36086 probable binding protein dependent transport protein - Streptomyces
coelicolor >gi|4678629|emb|CAB41202.1| (AL049661)
putative binding protein dependent transport protein
[Streptomyces coelicolor A3(2)]
Length = 279
Score = 70.2 bits (169), Expect = 3e-11
Identities = 50/212 (23%), Positives = 88/212 (40%), Gaps = 19/212 (8%)
Query: 73 KNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYI 132
+NS+ +++ ++ L AGYA+AR F+G I + ++A M P +P ++
Sbjct: 63 RNSLFISLGHTALNLALASMAGYALARIPFRGSTVIFMGVLATMMIPTYTKIVPQYLIAK 122
Query: 133 KLNL--------------IDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFG 178
+ +D+ G+ + PF + + + + +ELEEA + G
Sbjct: 123 GIPFFGGNDYLGRGGHGWLDSWWGLIIP--GALTPFAIFLFRQFYLSLPRELEEAARIDG 180
Query: 179 LTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI-LSIVAGAA 237
+ +G + + PL P +A + TF SWN I+T Q+ LS A
Sbjct: 181 MGEFGIYARVMTPLVKPAIATVGLLTFESSWNNFLWPLIITTDTDLRVIQVGLSAFQQAD 240
Query: 238 GGAAPAYYKFAAAFIMILPAMLFIFFARRYLV 269
A Y A + +P + A+RY V
Sbjct: 241 QNAWA--YMMAGTTLATIPMVALFLLAQRYFV 270
>sp|Q00751|MSMG_STRMU MULTIPLE SUGAR-BINDING TRANSPORT SYSTEM PERMEASE PROTEIN MSMG
>gi|282319|pir||D42400 membrane protein MsmG -
Streptococcus mutans >gi|153739|gb|AAA26936.1| (M77351)
membrane protein [Streptococcus mutans]
Length = 277
Score = 69.9 bits (168), Expect = 3e-11
Identities = 63/266 (23%), Positives = 116/266 (42%), Gaps = 12/266 (4%)
Query: 14 FYAFIFTVVAWILI--PIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVKTILFTLGAWSG 71
F+ ++ V ILI P++V+ +F D N P T K +L G
Sbjct: 10 FWKYVLLTVGGILILIPLMVTVFSSFKKTKDIMNHFFAFPNPITLDNYKRLLAD-GVGGY 68
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKD-TIKLSIVALRMF-PIPVMAIPLVV 129
NS ++ VL++++ L A Y+IAR + + K I S++ L +F P V+ IP+ V
Sbjct: 69 FWNSTVITVLSVLVVMLFIPAAAYSIARNMSRRKAFNIMYSLLILGIFVPFQVIMIPITV 128
Query: 130 LYIKLNLIDTLLGVALAHTAMALPFVV-LITSSIFAGVDKELEEAGMVFGLTRWGAFKSI 188
+ KL L + + G+ + + A+P + L I V L+EA + G + ++ I
Sbjct: 129 MMSKLGLAN-MWGLIILYLTYAIPQTLFLYVGYIKLSVPDSLDEAAEIDGADKLTTYRKI 187
Query: 189 TLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNR---TLPAQILSIVAGAAGGAAPAYY 245
P+ P A + + WN+ + ++ K+ TLP + P++
Sbjct: 188 IFPMLKPMHATTLIINALWFWNDFMLPLLILNKDSSMWTLPLFQYNYSGQYFNDYGPSFA 247
Query: 246 KFAAAFIMILPAMLFIFFARRYLVTM 271
+ I I ++++ F + + M
Sbjct: 248 SYIVGIITI--TIVYLIFQKHIIAGM 271
>gb|AAB17464.1| (U51868) unknown [Bacillus subtilis]
Length = 260
Score = 69.9 bits (168), Expect = 3e-11
Identities = 53/217 (24%), Positives = 94/217 (42%), Gaps = 5/217 (2%)
Query: 15 YAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKV-IPTSFTSQWVKTILFTLGAWSGIK 73
Y F+ ++P I +F+T + + + IPT+F+ + I T + +
Sbjct: 18 YGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLL 77
Query: 74 NSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIK 133
S+ V V+ +S L Y ++R G+ + +V +F + IP ++
Sbjct: 78 VSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGM--IPTFLVVKS 135
Query: 134 LNLIDTLLGVALAHTAMALPFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLA 193
L L+D+ + L A F ++I + F + LEE+ + G G F I LPL+
Sbjct: 136 LGLLDSYWALILPTAINA--FNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLS 193
Query: 194 LPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQIL 230
LP +A ++F V WN A + + P Q+L
Sbjct: 194 LPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVL 230
>pir||G72292 glycerol-3-phosphate ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981668|gb|AAD36198.1|AE001770_10 (AE001770)
glycerol-3-phosphate ABC transporter, permease protein
[Thermotoga maritima]
Length = 276
Score = 69.9 bits (168), Expect = 3e-11
Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 15 YAFIFTVVAWIL-IPIIVSTLYAFST-KADYYNPHKVIPTSFT-SQWVKTILFTLGAWSG 71
Y I +V +I+ +P+ ++ +F +A + P K PTSF +V+ + A
Sbjct: 11 YEIILVMVTFIMALPLFLAITISFQKPEAVFSYPPKFFPTSFYWKNYVEAFKYVPLARLF 70
Query: 72 IKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIP-VMAIPLVVL 130
+ NS+IVA L + G AG+A + + FK K + ++ A P VM +PL ++
Sbjct: 71 L-NSLIVASLITLGKLTTGALAGFAFSHFNFKSKKIMFATLFATLFLPAETVMILPLFLI 129
Query: 131 YIKLNLIDTLLGVALAHTAMALPFVVLITSSI-----FAGVDKELEEAGMVFGLTRWGAF 185
++T + A+ +PF+ T++ F + +EL++A ++ G + F
Sbjct: 130 MKTFGWVNT-------YWALTIPFMASATNTFLMRQHFLTIPRELQDAALIDGASYMQFF 182
Query: 186 KSITLPLALPGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQI 229
+ +PL+ LA A++ FV +WN I++++++ Q+
Sbjct: 183 WKVLIPLSKHMLAGASIINFVYAWNMYLWPLIVSMEDKMKTVQV 226
>sp|P39129|LPLC_BACSU LPLC PROTEIN >gi|7442828|pir||B69653 transmembrane lipoprotein lplC
- Bacillus subtilis >gi|450566|gb|AAA22576.1| (L19164)
transmembrane protein [Bacillus subtilis]
>gi|2633025|emb|CAB12531.1| (Z99107) transmembrane
lipoprotein [Bacillus subtilis]
Length = 295
Score = 68.7 bits (165), Expect = 8e-11
Identities = 58/216 (26%), Positives = 101/216 (45%), Gaps = 7/216 (3%)
Query: 17 FIFTVVAWILIPIIVSTLYAFSTKADY-YNPHKVIPTSFTSQWVKTILFTLGAWSGIKNS 75
F+ V A ++P + +F+T+A+ + P +FT K + T + S
Sbjct: 23 FLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVS 82
Query: 76 IIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALRMFPIPVMAIPLVVLYIKLN 135
I + V+ + Y +A+ KG++ + L++V M M IP ++ L
Sbjct: 83 IFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLL-LNLVIFSMLFSGGM-IPTYLVVKSLG 140
Query: 136 LIDTLLGVALAHTAMAL-PFVVLITSSIFAGVDKELEEAGMVFGLTRWGAFKSITLPLAL 194
L+DT + L MA+ PF ++I + F + +ELEE+ + G + G F I LPL+
Sbjct: 141 LLDTYWALILP---MAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSK 197
Query: 195 PGLAAAAMFTFVMSWNEVFVASILTLKNRTLPAQIL 230
P +A A+F V WN+ F A + + P Q++
Sbjct: 198 PVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMV 233
>pir||F81344 probable ABC transport system permease Cj0731 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968188|emb|CAB73005.1| (AL139076) putative ABC
transport system permease [Campylobacter jejuni]
Length = 259
Score = 68.3 bits (164), Expect = 1e-10
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 15/223 (6%)
Query: 1 MNEKTAFMLKKIAFYAFIFTVVAWILIPIIVSTLYAFSTKADYYNPHKVIPTSFTSQWVK 60
MNE + + KI YA +F V ++ +P++ + LY+ ST V+P T +W +
Sbjct: 1 MNENLS-LKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGV----SVLPDDLTLKWYQ 55
Query: 61 TIL----FTLGAWSGIKNSIIVAVLTIIISFLLGIPAGYAIARYVFKGKDTIKLSIVALR 116
+ F L W +S++V V +I++S +L P + + Y K K + + I+
Sbjct: 56 ELFHDERFLLALW----HSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAFVNILIIMPF 111
Query: 117 MFPIPVMAIPLVVLYIKLNLIDTLLGVALAHTAMALPFVVLITSSIFAGVD-KELEEAGM 175
P V + L+ LY N+ T + + +ALPF+ + + V+ EL +
Sbjct: 112 AVPPIVSCVGLLQLYAD-NIGGTAWILIFTYFTIALPFIYRALDNAISNVNLNELITSNA 170
Query: 176 VFGLTRWGAFKSITLPLALPGLAAAAMFTFVMSWNEVFVASIL 218
+ G + GA + LP G+ A +F E A+IL
Sbjct: 171 MLGGSLMGAIFKLILPNLRNGILVAVFLSFSFLIGEFLYANIL 213
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.142 0.425
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93298987
Number of Sequences: 2977
Number of extensions: 3557579
Number of successful extensions: 14089
Number of sequences better than 1.0e-10: 163
Number of HSP's better than 0.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 13864
Number of HSP's gapped (non-prelim): 173
length of query: 277
length of database: 189,106,746
effective HSP length: 52
effective length of query: 225
effective length of database: 157,985,422
effective search space: 35546719950
effective search space used: 35546719950
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)