BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2337 (nrdD) DE:ANAEROBIC RIBONUCLEOSIDE-TRIPHOSPHATE
REDUCTASE
(658 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75187 anaerobic ribonucleoside-triphosphate reductase PAB2... 1367 0.0
pir||B71220 hypothetical protein PH0021 - Pyrococcus horikoshii ... 1116 0.0
emb|CAA10041.1| (AJ012479) NrdD protein [Ralstonia eutropha] 229 6e-59
pir||C69072 anaerobic ribonucleoside-triphosphate reductase - Me... 213 5e-54
pir||D83405 conserved hypothetical protein PA1920 [imported] - P... 210 5e-53
pir||A72384 conserved hypothetical protein - Thermotoga maritima... 181 2e-44
sp|Q58242|Y832_METJA HYPOTHETICAL PROTEIN MJ0832 >gi|2129243|pir... 102 1e-20
>pir||C75187 anaerobic ribonucleoside-triphosphate reductase PAB2337 -
Pyrococcus abyssi (strain Orsay)
>gi|5457455|emb|CAB48946.1| (AJ248283) ANAEROBIC
RIBONUCLEOSIDE-TRIPHOSPHATE REDUCTASE [Pyrococcus
abyssi]
Length = 658
Score = 1367 bits (3500), Expect = 0.0
Identities = 658/658 (100%), Positives = 658/658 (100%)
Query: 1 MLLRSNEDKSILMSNLCRNIGFNIQKAYNPYSQHILIGQNIQVIRMEEVSRDIISEYAKW 60
MLLRSNEDKSILMSNLCRNIGFNIQKAYNPYSQHILIGQNIQVIRMEEVSRDIISEYAKW
Sbjct: 1 MLLRSNEDKSILMSNLCRNIGFNIQKAYNPYSQHILIGQNIQVIRMEEVSRDIISEYAKW 60
Query: 61 QSLDVLENANRYPGPSGFFAYVMEEALKDSLNLIPEIGRRAHFSGEIYIHKLPYSLYIPY 120
QSLDVLENANRYPGPSGFFAYVMEEALKDSLNLIPEIGRRAHFSGEIYIHKLPYSLYIPY
Sbjct: 61 QSLDVLENANRYPGPSGFFAYVMEEALKDSLNLIPEIGRRAHFSGEIYIHKLPYSLYIPY 120
Query: 121 CTGHSIARLLEKGLKTPTIISRPARHFDTFVDHVANYLITLQHYFSGAQAFSSVEWYAGP 180
CTGHSIARLLEKGLKTPTIISRPARHFDTFVDHVANYLITLQHYFSGAQAFSSVEWYAGP
Sbjct: 121 CTGHSIARLLEKGLKTPTIISRPARHFDTFVDHVANYLITLQHYFSGAQAFSSVEWYAGP 180
Query: 181 FIRKENLDERKIKQNIQRLVYNLNYPTRIGLQTPFTNFTVTLDAPKKMLEGDYAVYDGKK 240
FIRKENLDERKIKQNIQRLVYNLNYPTRIGLQTPFTNFTVTLDAPKKMLEGDYAVYDGKK
Sbjct: 181 FIRKENLDERKIKQNIQRLVYNLNYPTRIGLQTPFTNFTVTLDAPKKMLEGDYAVYDGKK 240
Query: 241 VAPLGEYEEEAKKFFVALTQVLREGDAIGQPFTFPIPTIMVTAKMLWDDPEVFEAVFTTA 300
VAPLGEYEEEAKKFFVALTQVLREGDAIGQPFTFPIPTIMVTAKMLWDDPEVFEAVFTTA
Sbjct: 241 VAPLGEYEEEAKKFFVALTQVLREGDAIGQPFTFPIPTIMVTAKMLWDDPEVFEAVFTTA 300
Query: 301 AKRGSFYWLNTNVVDPDASYAMCCRLNIDKNEFMYAFGLSGKSSEEEALERLERQRFGGL 360
AKRGSFYWLNTNVVDPDASYAMCCRLNIDKNEFMYAFGLSGKSSEEEALERLERQRFGGL
Sbjct: 301 AKRGSFYWLNTNVVDPDASYAMCCRLNIDKNEFMYAFGLSGKSSEEEALERLERQRFGGL 360
Query: 361 WAMPDVTGSINVTTVNLPRIALKARDDDEFWEEYERVLEIVRITTEWFRDRYISLIRNYP 420
WAMPDVTGSINVTTVNLPRIALKARDDDEFWEEYERVLEIVRITTEWFRDRYISLIRNYP
Sbjct: 361 WAMPDVTGSINVTTVNLPRIALKARDDDEFWEEYERVLEIVRITTEWFRDRYISLIRNYP 420
Query: 421 HMYSMITTYLEEFPSSHFNTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEATNIMKEMVE 480
HMYSMITTYLEEFPSSHFNTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEATNIMKEMVE
Sbjct: 421 HMYSMITTYLEEFPSSHFNTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEATNIMKEMVE 480
Query: 481 FATSKAREWMRKTGVPWNVEEVPGESAAAKLAIKDARDFPEVKEFLSDPENPIYSTSIAP 540
FATSKAREWMRKTGVPWNVEEVPGESAAAKLAIKDARDFPEVKEFLSDPENPIYSTSIAP
Sbjct: 481 FATSKAREWMRKTGVPWNVEEVPGESAAAKLAIKDARDFPEVKEFLSDPENPIYSTSIAP 540
Query: 541 YYGSLELADRIRIEEKVQRSFTGGVMMHIFLGEEPDPEALAQLTKKLMKTELVYWSYTPA 600
YYGSLELADRIRIEEKVQRSFTGGVMMHIFLGEEPDPEALAQLTKKLMKTELVYWSYTPA
Sbjct: 541 YYGSLELADRIRIEEKVQRSFTGGVMMHIFLGEEPDPEALAQLTKKLMKTELVYWSYTPA 600
Query: 601 ITVCNSCGYSTTGLYTHCPRCGSENVEIWSRIIGYYRPLRNWNPFRKKEFWTRKHYTG 658
ITVCNSCGYSTTGLYTHCPRCGSENVEIWSRIIGYYRPLRNWNPFRKKEFWTRKHYTG
Sbjct: 601 ITVCNSCGYSTTGLYTHCPRCGSENVEIWSRIIGYYRPLRNWNPFRKKEFWTRKHYTG 658
>pir||B71220 hypothetical protein PH0021 - Pyrococcus horikoshii
>gi|3256406|dbj|BAA29089.1| (AP000001) 611aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 611
Score = 1116 bits (2854), Expect = 0.0
Identities = 513/605 (84%), Positives = 569/605 (93%)
Query: 52 DIISEYAKWQSLDVLENANRYPGPSGFFAYVMEEALKDSLNLIPEIGRRAHFSGEIYIHK 111
DII EYA+W SLDVLENANRYPGPSGFFAYVMEEAL +SL+LIPEIG +AH SG+IYIHK
Sbjct: 5 DIIHEYARWGSLDVLENANRYPGPSGFFAYVMEEALNNSLSLIPEIGLKAHLSGDIYIHK 64
Query: 112 LPYSLYIPYCTGHSIARLLEKGLKTPTIISRPARHFDTFVDHVANYLITLQHYFSGAQAF 171
LPYSLYIPYCTGHSIARLLEKGLKTPTI S+PA+HFDTFVDHVANYLITLQHYFSGAQAF
Sbjct: 65 LPYSLYIPYCTGHSIARLLEKGLKTPTITSKPAKHFDTFVDHVANYLITLQHYFSGAQAF 124
Query: 172 SSVEWYAGPFIRKENLDERKIKQNIQRLVYNLNYPTRIGLQTPFTNFTVTLDAPKKMLEG 231
SSVEWYAGPFIR+E L+ RK+KQNIQRL+YNLNYPTRIGLQTPFTNFTVTLDAP+KMLEG
Sbjct: 125 SSVEWYAGPFIRREGLNSRKVKQNIQRLIYNLNYPTRIGLQTPFTNFTVTLDAPRKMLEG 184
Query: 232 DYAVYDGKKVAPLGEYEEEAKKFFVALTQVLREGDAIGQPFTFPIPTIMVTAKMLWDDPE 291
DYA+Y+GKKVAPLGEYE+EAK F +AL++VLREGDA+GQPFTFPIPT+MVTAKM+WDDPE
Sbjct: 185 DYAIYNGKKVAPLGEYEKEAKMFIIALSEVLREGDALGQPFTFPIPTLMVTAKMIWDDPE 244
Query: 292 VFEAVFTTAAKRGSFYWLNTNVVDPDASYAMCCRLNIDKNEFMYAFGLSGKSSEEEALER 351
VFEA+FTTAAKRGSFYWLNTNVVDPDASYAMCCRLNIDK E YAF +SGKSSEEE LE+
Sbjct: 245 VFEAIFTTAAKRGSFYWLNTNVVDPDASYAMCCRLNIDKRELTYAFEVSGKSSEEETLEK 304
Query: 352 LERQRFGGLWAMPDVTGSINVTTVNLPRIALKARDDDEFWEEYERVLEIVRITTEWFRDR 411
LERQRFGGLWAMPD+TGS+NVTTVNLPRIALKA+DDD+FWEEYER+LEIVRITT+WFR+R
Sbjct: 305 LERQRFGGLWAMPDITGSVNVTTVNLPRIALKAKDDDKFWEEYERILEIVRITTDWFRER 364
Query: 412 YISLIRNYPHMYSMITTYLEEFPSSHFNTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEA 471
YI LI +YPHMYSMI YLEEFP SHFNTIGILGLPEA AIY+N P+LW EG+RRDW+E+
Sbjct: 365 YIKLISSYPHMYSMIKEYLEEFPMSHFNTIGILGLPEAVAIYMNSPELWKEGNRRDWIES 424
Query: 472 TNIMKEMVEFATSKAREWMRKTGVPWNVEEVPGESAAAKLAIKDARDFPEVKEFLSDPEN 531
+MK+MVEFAT+KAREWMR TG PWNVEEVPGESAAAKLAI+D ++FPE+K++L DP+N
Sbjct: 425 ARLMKKMVEFATAKAREWMRATGTPWNVEEVPGESAAAKLAIRDMKEFPELKDYLEDPDN 484
Query: 532 PIYSTSIAPYYGSLELADRIRIEEKVQRSFTGGVMMHIFLGEEPDPEALAQLTKKLMKTE 591
PIYSTSIAPYYGSLEL DR++IEE VQ SFTGGVMMHIFLGEEPDPEALAQLTKKLM+T+
Sbjct: 485 PIYSTSIAPYYGSLELGDRVKIEEMVQGSFTGGVMMHIFLGEEPDPEALAQLTKKLMRTK 544
Query: 592 LVYWSYTPAITVCNSCGYSTTGLYTHCPRCGSENVEIWSRIIGYYRPLRNWNPFRKKEFW 651
LVYWSYTPAITVCNSC S TGLYT CPRCGS++VEIWSRIIGYYRPLRNWNP+R+KEFW
Sbjct: 545 LVYWSYTPAITVCNSCKASFTGLYTRCPRCGSKDVEIWSRIIGYYRPLRNWNPYRRKEFW 604
Query: 652 TRKHY 656
+RKHY
Sbjct: 605 SRKHY 609
>emb|CAA10041.1| (AJ012479) NrdD protein [Ralstonia eutropha]
Length = 676
Score = 229 bits (579), Expect = 6e-59
Identities = 179/617 (29%), Positives = 298/617 (48%), Gaps = 54/617 (8%)
Query: 22 FNIQKAYNPY-SQHILIGQNIQVIRMEEVSRDIISEYAKWQSLDVLENANRYPGPSGFFA 80
+N +A+ Y QH + Q+ + + E S I+EY V NAN+ G
Sbjct: 89 WNTARAFIAYRGQHARLRQDRKALVDVEAS---INEYLSKADWRVNANANQGYSLGGLIL 145
Query: 81 YVMEEALKD---SLNLIPEIGRRAHFSGEIYIHKLPYSLYIPYCTGHSIARLLEKGLK-- 135
V + + S PEIG AH +G+I+IH L + YC G S+ LL +G
Sbjct: 146 NVAGKVTANYWLSHVYTPEIGE-AHRNGDIHIHDL--DMLSGYCAGWSLRTLLHEGFNGV 202
Query: 136 TPTIISRPARHFDTFVDHVANYLITLQHYFSGAQAFSSVEWYAGPFIRKENLDERKIKQN 195
+ + P + + V + N+L TLQ+ ++GAQAFSS + Y PF+RK+ + +++Q
Sbjct: 203 PGKVEAGPPKRMSSAVGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFVRKDAMSYAQVRQC 262
Query: 196 IQRLVYNLNYPTRIGLQTPFTNFTVTLDAPKKMLEGDYAVYDGKKVAPLGEYEEEAKKFF 255
IQ L+YNLN P+R G QTPFTN T P+ + E + + GE ++E
Sbjct: 263 IQELIYNLNVPSRWGTQTPFTNLTFDWTCPEDLREQVPVIGGQEMPFAYGELQKEMDLIN 322
Query: 256 VALTQVLREGDAIGQPFTFPIPTIMVTAKMLWDDPEVFEAVFTTAAKRGSFYWLN--TNV 313
A +V+ GDA G+ FTFPIPT +T W+ E + +F A+ G Y+ N +
Sbjct: 323 RAYIEVMTAGDAKGRVFTFPIPTYNITRDFPWES-ENAKRLFEMTARYGLPYFQNFINSE 381
Query: 314 VDPDASYAMCCRLNIDKNEFMYAFGLSGKSSEEEALERLERQRFGGLWAMPDVTGSINVT 373
++P+ +MCCRL +D E + +R GL+ + TGS+ V
Sbjct: 382 LEPNMVRSMCCRLQLDLRELL--------------------KRGNGLFGSAEQTGSVGVV 421
Query: 374 TVNLPRIA-LKARDDDEFWEEYERVLEIVRITTEWFRDRYISLIRN--YPHMYSMITTYL 430
TVN R+ L A D+ +R+LE+ + + E R L+ +P+ + T
Sbjct: 422 TVNCARLGYLHAGDEAALLRALDRLLELGKQSLENKRKLIQHLMDQGLFPYTKRYLGTL- 480
Query: 431 EEFPSSHFNTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEATNIMKEMVEFATSKAREWM 490
+HF+T+G+ G+ E + D +W A + ++E + +
Sbjct: 481 ----RNHFSTLGVNGVNEMIRNFTADR----HDITSEWGHAFAL--RLLEHVRERIVAFQ 530
Query: 491 RKTGVPWNVEEVPGESAAAKLAIKDARDFPEVKEFLSDPENPIY-STSIAPYYGSLELAD 549
++TG +N+E P E A + A +D + +P++++ E P Y ++S P + + +
Sbjct: 531 QETGHLYNLEATPAEGATYRFAREDRKRWPDIRQ-AGTAEQPYYTNSSQLPVGWTEDPFE 589
Query: 550 RIRIEEKVQRSFTGGVMMHIFLGE-EPDPEALAQLTKK-LMKTELVYWSYTPAITVCNSC 607
+ +E +Q +TGG ++H+++GE EA +L ++ L + L Y + TP ++C +
Sbjct: 590 ALARQEDLQARYTGGTVLHLYMGECLSSGEACRELVRRALTRFRLPYITVTPTFSICPTH 649
Query: 608 GYSTTGLYTHCPRCGSE 624
GY G + CPRC E
Sbjct: 650 GY-LAGEHPFCPRCDEE 665
>pir||C69072 anaerobic ribonucleoside-triphosphate reductase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622659|gb|AAB86013.1| (AE000914) anaerobic
ribonucleoside-triphosphate reductase [Methanobacterium
thermoautotrophicum]
Length = 776
Score = 213 bits (537), Expect = 5e-54
Identities = 179/621 (28%), Positives = 280/621 (44%), Gaps = 75/621 (12%)
Query: 67 ENANRYPGPSGFFAYVMEEALKDS--LNLIPEIGRRAHFSGEIYIHKLPYSLYIPY-CTG 123
+NAN P YV +EALK L+++P AH SG+I+IH L + P C
Sbjct: 194 DNANMIHNPETVHKYVADEALKQYTLLHILPSRLADAHMSGDIHIHDLEFFAARPLNCLQ 253
Query: 124 HSIARLLEKGLKTP-----TIISRPARHFDTFVDHVANYLITLQHYFSGAQAFSSVEWYA 178
H + + GL+ T ++ P +H +T ++H ++ Q SG QA S +
Sbjct: 254 HDLRLFIRHGLRVDGTGDHTSVAGPPKHLETLMNHAGEIMLASQQNMSGGQAMSLWNVFV 313
Query: 179 GPFIRKENLDERKIKQNIQRLVYNLN--YPTRIGLQTPFTNFTVTLDAPKKMLEGDYAVY 236
PF L KIKQ +Q ++NLN Y R G Q PFT+ + P+ + +
Sbjct: 314 APFA--SGLSYEKIKQAVQMFIFNLNMAYAAR-GSQVPFTSINLEFGVPEFLEDEPAYGP 370
Query: 237 DGKKVAPLGEYEEEAKKFFVALTQVLREGDAIGQPFTFPIPTIMVTAKMLWDD-PEVFEA 295
G+ G++ EEA+ A T+VL EGDA G+P FP + + + E
Sbjct: 371 RGEYAGVYGDFAEEARLLTRAFTEVLLEGDADGKPHLFPNTIYSLRRETFRGEFDEELSL 430
Query: 296 VFTTAAKRGSFYWLNTNVVDPDASYA--MCCRLNIDKNEFMYAFGLSGKSSEEEALERLE 353
V A+K G+ Y++N + D A M CR ++ N
Sbjct: 431 VHELASKYGTAYFINM-LADYRGKMANYMGCRTSLADN---------------------- 467
Query: 354 RQRFGGLWAMPDV-TGSINVTTVNLPRIALKARDDDEFWEEYERVLEIVRITTEWFRDRY 412
+ G W + TG++ T+NLPRIA ++RDDDE +E + E + + E R R
Sbjct: 468 ---WTGDWEKDCLRTGNLAYITLNLPRIAYQSRDDDELFEYLD---EYIDMAVEVLRIRR 521
Query: 413 ISLIRNYPHMYSMITTYLEEFPSSHFNTI-------GILGLPEAAAIYLNDPKLWIEGSR 465
S + Y ++ +E + I G GL E +L G+
Sbjct: 522 -SQAQRCLDDYHLLPFLSQEIDGERYYRIENATMSFGFTGLNEMLEYHL--------GAG 572
Query: 466 RDWLEATNIMKEMVEFATSKAREWMRKTGVPWNVEEVPGESAAAKLAIKDARDFPEVKEF 525
EA ++E +A E ++TG W+V + P ES A + A+ D +PE +
Sbjct: 573 IQSPEANRFGLRVIEHINERAAELKKETGWRWSVLQTPAESTAHRFAMLDHEHYPE-EAV 631
Query: 526 LSDPENPIYST--SIAPYYGSLELADRIRIEEKVQRSFTGGVMMHIFLGE-EPDPEALAQ 582
L E Y T S P ++L ++IRIEEK GG + + +LGE +PDP AL
Sbjct: 632 LQGTEGAYYYTNSSHTPVNAEVDLVEKIRIEEKYHPLTPGGHIFNAWLGEAKPDPAALEG 691
Query: 583 LTKKL-MKTELVYWSYTPAITVCNSCGYSTTGLYTHCPRCGS-ENVEIWSRIIGYYRPL- 639
LT+++ ++++ +W+Y+ A++ C C GL C RCG + VE + RI GY + +
Sbjct: 692 LTRRICRRSDIGFWAYSNALSFCLRCKTLMRGLQDSCARCGERDEVEWYDRITGYVQQVG 751
Query: 640 ------RNWNPFRKKEFWTRK 654
WN +++E R+
Sbjct: 752 RAKSSSGGWNRGKQQELLDRR 772
>pir||D83405 conserved hypothetical protein PA1920 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947914|gb|AAG05308.1|AE004618_2 (AE004618)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 675
Score = 210 bits (528), Expect = 5e-53
Identities = 150/536 (27%), Positives = 257/536 (46%), Gaps = 50/536 (9%)
Query: 101 AHFSGEIYIHKLPYSLYIPYCTGHSIARLLEKGLK--TPTIISRPARHFDTFVDHVANYL 158
AH +++IH L + YC G S+ LL +GL + + P +H + + + N+L
Sbjct: 162 AHRDADLHIHDL--DMLAGYCAGWSLRTLLNEGLNGVPGRVEAGPPKHLGSALGQMVNFL 219
Query: 159 ITLQHYFSGAQAFSSVEWYAGPFIRKENLDERKIKQNIQRLVYNLNYPTRIGLQTPFTNF 218
TLQ+ ++GAQAFSS + Y P++RK+ LD ++Q +Q +YNLN P+R G QTPFTN
Sbjct: 220 GTLQNEWAGAQAFSSFDTYLAPYVRKDRLDYASVRQALQEFIYNLNVPSRWGTQTPFTNL 279
Query: 219 TVTLDAPKKMLEGDYAVYDGKKVAPLGEYEEEAKKFFVALTQVLREGDAIGQPFTFPIPT 278
T P + + + + GE + E A +V++ GDA G+ FTFPIPT
Sbjct: 280 TFDWVCPDDLRDQVPRIGGEEMPFAYGELQAEMDLINRAYIEVMQAGDAHGRVFTFPIPT 339
Query: 279 IMVTAKMLWDDPEVFEAVFTTAAKRGSFYWLN--TNVVDPDASYAMCCRLNIDKNEFMYA 336
+T WD +F A+ G Y+ N + + P+ +MCCRL +D E +
Sbjct: 340 YNITHDFPWDSDNA-TRLFEMTARYGLPYFQNFLNSDMQPNQVRSMCCRLQLDVRELL-- 396
Query: 337 FGLSGKSSEEEALERLERQRFGGLWAMPDVTGSINVTTVNLPRIALKARDDDE-FWEEYE 395
+R GL+ + TGS+ V T+N R+ + R D + + +
Sbjct: 397 ------------------KRGNGLFGSAEQTGSLGVVTINCARLGYRHRGDAAGLYRQLD 438
Query: 396 RVLEIVRITTEWFRDRYISLIRNYPHMYSMITTYLEEFPS---SHFNTIGILGLPEAAAI 452
+LE+ + E R +I+ HM + + Y + +HF+TIG+ GL E
Sbjct: 439 HLLELAFASLELKR----KVIQQ--HMDAGLYPYTRRYLGTLRNHFSTIGVNGLHEMVRN 492
Query: 453 YLNDPK-LWIEGSRRDWLEATNIMKEMVEFATSKAREWMRKTGVPWNVEEVPGESAAAKL 511
+ +D + L E R + +++ ++ + +G +N+E P E +
Sbjct: 493 FSDDREGLHSEAGR-------EMALALLDHVRARLVGFQEDSGHLYNLEATPAEGTTYRF 545
Query: 512 AIKDARDFPEVKEFLSDPENPIY-STSIAPYYGSLELADRIRIEEKVQRSFTGGVMMHIF 570
A +D + +P + + PE P Y ++S P + + + + +++ +Q +TGG ++H++
Sbjct: 546 AREDRKRYPRILQ-AGTPEAPYYTNSSQLPVGFTDDPFEALELQDALQCKYTGGTVLHLY 604
Query: 571 LGEE-PDPEALAQLTK-KLMKTELVYWSYTPAITVCNSCGYSTTGLYTHCPRCGSE 624
+ E EA L + L + L Y + TP ++C GY G + CP+C E
Sbjct: 605 MAERISSAEACKTLVRTALGRFRLPYLTVTPTFSICPRHGY-LAGEHEFCPKCDEE 659
>pir||A72384 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980888|gb|AAD35470.1|AE001718_7 (AE001718)
conserved hypothetical protein [Thermotoga maritima]
Length = 651
Score = 181 bits (455), Expect = 2e-44
Identities = 165/583 (28%), Positives = 272/583 (46%), Gaps = 71/583 (12%)
Query: 101 AHFSGEIYIHKLPYSLYIPYCTGHSIARLLEKGLK-TPTIISRPARHFDTFVDHVANYLI 159
A +G +Y+H ++ +PYC +++ ++EKGL TI S PA+H TF+ HV +++
Sbjct: 105 AQINGAVYLHDRHHAALMPYCFAYTLKPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVM 164
Query: 160 TLQHYFSGAQA---FSSVEWYAGPFIRKENLDERK-----IKQNIQRLVYNLNYPTRIGL 211
+ SGA F WY KE + R I+Q+ Q L Y+LN P R
Sbjct: 165 FASNQSSGAVGLPDFFVWMWYFVKKDLKEGIIPRDKLDWYIEQHFQILTYSLNQPIRT-T 223
Query: 212 QTPFTNFTVTLDAPKKMLEGDY--AVYDGKKVAPLGEYEEEAKKFFVALTQ-----VLRE 264
Q+P+TNFT L+ +Y A+++G++ P G + + +AL + V RE
Sbjct: 224 QSPYTNFT--------YLDRNYIKAIFEGERY-PDGSLITDHVEDIIALQKHYWEWVSRE 274
Query: 265 GDAIGQPFTFPIPTIMVTAKMLWDDPEVFEAVFTTAAKRGSFYWLNTN--VVDPDASYAM 322
+ Q FTFP+ +TA +L+ D + + + + W +TN + D + A
Sbjct: 275 RER--QMFTFPV----LTASLLYKDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVAS 328
Query: 323 CCRLNIDKNEFMYAFGLSGKSSEEEALERLERQRFGGLWAMPDVTGSINVTTVNLPRIAL 382
CCRL + + F LS S EEE L + R + GS V TVNLPRIAL
Sbjct: 329 CCRLT-SSTQTLKKFSLS--SEEEEKL----KGRMNSIGGSDLNIGSFKVITVNLPRIAL 381
Query: 383 KARDDDEFWEEYERVLEIVRITTEWFRDRYISLIRNYPHMYSMITTYLEE----FPSSHF 438
++ D E+ L+I+R + + ++ S L E + +
Sbjct: 382 ESGGD------REKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQY 435
Query: 439 NTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEATN----IMKEMVEFATSKAREWMRKTG 494
TIG+ G+ E+A+I + + D L+ T + +++ +A + + G
Sbjct: 436 GTIGVTGVWESASI------MGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYG 489
Query: 495 VPWNVEEVPGESAAAKLAIKDARDFPEVKEFLSDPENPIYSTSIAPYYGSLELADRIRIE 554
+N+E+VP E AA LA KD F E + F IYS P + ++ +RIR
Sbjct: 490 FTFNIEQVPAEKAAVTLAQKDRFLFGEKQPF------EIYSNQWVPLMANTDVLNRIRYS 543
Query: 555 EKVQRSFTGGVMMHIFLGEE-PDPEALAQLTKKLMKTELVYWSYTPAITVCNSCGYSTTG 613
K + +GG ++HI LGE E + K + ++Y+++ I+VC G++ G
Sbjct: 544 GKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCED-GHAFYG 602
Query: 614 LYTHCPRCGSENVEIWSRIIGYYRPLRNWNPFRKKEFWTRKHY 656
CP CG V+ + RI+GY P+ +N R++ + R+ +
Sbjct: 603 --ERCPVCGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQF 643
>sp|Q58242|Y832_METJA HYPOTHETICAL PROTEIN MJ0832 >gi|2129243|pir||H64403
ribonucleoside-triphosphate reductase (EC 1.17.4.2),
anaerobic (intein-containing) - Methanococcus jannaschii
>gi|1591520|gb|AAB98834.1| (U67527) anaerobic
ribonucleoside-triphosphate reductase (nrdD)
[Methanococcus jannaschii]
Length = 1750
Score = 102 bits (252), Expect = 1e-20
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 545 LELADRIRIEEKVQRSFTGGVMMHIF-LGEEPDPEALAQLTKKLMKTELVYWSYTPAITV 603
+ L +++RIEEK GG +MHI+ + DPE L +TKK+ KT + +W+YT ++V
Sbjct: 1636 ITLGEKVRIEEKFHPLCNGGHIMHIWNIESAADPEVLMDITKKITKTHIGFWTYTKNLSV 1695
Query: 604 CNSCGYSTTGLYTHCPRCGSENVEIWSRIIGYYRPLRNWNPFRKKEFWTRK 654
CN CG S GL C CGSE+V +SRI GY + + NWN ++KE RK
Sbjct: 1696 CNRCGISMGGLRDRCINCGSEDVAKFSRITGYLQNISNWNRAKQKELEDRK 1746
Score = 80.8 bits (196), Expect = 5e-14
Identities = 95/383 (24%), Positives = 163/383 (41%), Gaps = 66/383 (17%)
Query: 202 NLNYPTRIGL---QTPFTNFTVTLDAPKKMLEGDYAVYDGKKVAPLGEYEEEAKKFFVAL 258
N N+ T G+ T F++ + L+ P+ L+ AV G G+YEEEAK AL
Sbjct: 777 NENFITATGILCHNTIFSSINLELEIPE-FLKDKPAVIAGTTRGTYGDYEEEAKLILEAL 835
Query: 259 TQVLREGDAIGQPFTFPIPTIMVTAKMLWDD-PEVFEAVFTTAAKRGSFYWLNTNVVDPD 317
V+ EGDA+G+PF FP I + D+ E+ + +AK G Y++N + PD
Sbjct: 836 VDVMMEGDAMGKPFLFPNFIIKLRENAFKDENKELMYKIHQLSAKFGIPYFIN---MLPD 892
Query: 318 ----ASYAMCCRLNIDKNEFMYAFGLSGKSSEEEALERLERQRFGGLWAMPDVTGSINVT 373
+ AM CR LSG + + ++ L TG++
Sbjct: 893 WQVTNTNAMGCRTR-----------LSGNWTGDAEIDTLR-------------TGNMQWY 928
Query: 374 TVNLPRIALKARDDDEFWEEYERVLEIVRITTEWFRDRYI---SLIRNYPHMYSMITTYL 430
++NLPRIA +A DD ++ EI+ E ++ + + + ++ +++
Sbjct: 929 SLNLPRIAYEANGDD------TKLFEILHERLEILKEALLIKHEVTKERLYVDNLMPFLT 982
Query: 431 EEFPSSHF-------NTIGILGLPEAAAIYLNDPKLWIEGSRRDWLEATNIMKEMVEFAT 483
+EF + T G +GL E +L + + +A ++++E+
Sbjct: 983 QEFDGESYYRYENTTKTFGFVGLNEMLKYHLGE-------ELHESKDAVKFGEKVIEYIR 1035
Query: 484 SKAREWMRKTGVPWNVEEVPGESAA---AKLAIKDARDFPEVK--EFLSDPENPIYSTSI 538
A + +TG+ W V + P ES+ K+ I + ++ VK EF+ N +I
Sbjct: 1036 EYADKLKEETGLRWTVTQTPAESSLPYDEKILIFENNEYKLVKIGEFVEKYLNRYKDRAI 1095
Query: 539 APYYGSLELADRIRIEEKVQRSF 561
YG + I+ E SF
Sbjct: 1096 T--YGDNNIEVYIKDENIYAPSF 1116
Score = 78.0 bits (189), Expect = 3e-13
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 67 ENANRYPGPSGFFAYVMEEALKDS--LNLIPEIGRRAHFSGEIYIHKLPYSLYIPYCTGH 124
ENAN P +V +E +K L + P+ AH G+I++H L Y+ P C H
Sbjct: 186 ENANLMYNPESIHKWVADETMKQYALLAIFPKHIADAHIKGDIHLHDLEYAATRPVCLQH 245
Query: 125 SIARLLEKGLKTP-----TIISRPARHFDTFVDHVANYLITLQHYFSGAQAFSSVEWYAG 179
+ + GLK T +S+PA+H + + H A ++ Q SG Q+ +
Sbjct: 246 DLRPFFKYGLKVDGTGLHTSVSKPAKHPEVAIQHAAKVMMAAQTNMSGGQSIDEFNVWLA 305
Query: 180 PFIRKENLDERKIKQNIQRLVYNLN 204
P++R L KIKQ +Q +Y LN
Sbjct: 306 PYVR--GLSYEKIKQLMQMFIYELN 328
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262268444
Number of Sequences: 2977
Number of extensions: 11345972
Number of successful extensions: 24334
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24294
Number of HSP's gapped (non-prelim): 10
length of query: 658
length of database: 189,106,746
effective HSP length: 55
effective length of query: 603
effective length of database: 156,189,961
effective search space: 94182546483
effective search space used: 94182546483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)