BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2339 (PAB2339) DE:Hypothetical protein
         (140 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75187 hypothetical protein PAB2339 - Pyrococcus abyssi (st...   278  2e-74
pir||A75034 hypothetical protein PAB1546 - Pyrococcus abyssi (st...   113  1e-24

>pir||A75187 hypothetical protein PAB2339 - Pyrococcus abyssi (strain Orsay)
           >gi|5457453|emb|CAB48944.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 140
           
 Score =  278 bits (704), Expect = 2e-74
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MEIDKDLIERRLAEIKGAINELRDIGDLGLEEFLTNSHIRYAAKYLLIMAIGGAFSICNH 60
           MEIDKDLIERRLAEIKGAINELRDIGDLGLEEFLTNSHIRYAAKYLLIMAIGGAFSICNH
Sbjct: 1   MEIDKDLIERRLAEIKGAINELRDIGDLGLEEFLTNSHIRYAAKYLLIMAIGGAFSICNH 60

Query: 61  IVVRKGDIPSSYSDCFLKLSRLGIISGDLAERLAQMAKFRNMLVHVYWRIDDEKVFEILR 120
           IVVRKGDIPSSYSDCFLKLSRLGIISGDLAERLAQMAKFRNMLVHVYWRIDDEKVFEILR
Sbjct: 61  IVVRKGDIPSSYSDCFLKLSRLGIISGDLAERLAQMAKFRNMLVHVYWRIDDEKVFEILR 120

Query: 121 EDIVDLEEFIRAVVRYLEKV 140
           EDIVDLEEFIRAVVRYLEKV
Sbjct: 121 EDIVDLEEFIRAVVRYLEKV 140


>pir||A75034 hypothetical protein PAB1546 - Pyrococcus abyssi (strain Orsay)
           >gi|5458679|emb|CAB50166.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 156
           
 Score =  113 bits (279), Expect = 1e-24
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 1   MEIDKDLIERRLAEIKGAINELRDIGDLGLEEFLTNSHIRYAAKYLLIMAIGGAFSICNH 60
           +E DK+ I R ++E + A+  L ++G+L +EEFL N H   +AKY L++AI     I  H
Sbjct: 15  LEYDKERITRLMSEAENALQSLYELGNLDVEEFLKNKHYVSSAKYNLLVAIEACIDIAYH 74

Query: 61  IVVR-KGDIPSSYSDCFLKLSRLGIISGDLAERLAQMAKFRNMLVHVYWRIDDEKVFEIL 119
           ++ + K  +P  Y D F  L   GII   LA RL  MA+FRN LVH+YW ID+  V++I+
Sbjct: 75  LISKNKLRLPRDYVDSFKVLEENGIIDEQLAHRLILMARFRNRLVHIYWDIDNRMVYKII 134

Query: 120 REDIVDLEEFIRAV 133
            EDI D+E F++ +
Sbjct: 135 TEDIKDIENFLKTL 148


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.145    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46802403
Number of Sequences: 2977
Number of extensions: 1726488
Number of successful extensions: 5468
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5465
Number of HSP's gapped (non-prelim): 2
length of query: 140
length of database: 189,106,746
effective HSP length: 52
effective length of query: 88
effective length of database: 157,985,422
effective search space: 13902717136
effective search space used: 13902717136
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)