BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2340 (PAB2340) DE:Hypothetical protein
         (128 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75186 hypothetical protein PAB2340 - Pyrococcus abyssi (st...   254  4e-67
pir||C71157 hypothetical protein PH0458 - Pyrococcus horikoshii ...   181  2e-45
pir||B75034 hypothetical protein PAB1545 - Pyrococcus abyssi (st...   115  2e-25

>pir||H75186 hypothetical protein PAB2340 - Pyrococcus abyssi (strain Orsay)
           >gi|5457452|emb|CAB48943.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 128
           
 Score =  254 bits (641), Expect = 4e-67
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MKRCEIEEKLKKILEKHREVIFAYLHGSILETDYFRDIDVAVYVDESVKNYLKYEISLAV 60
           MKRCEIEEKLKKILEKHREVIFAYLHGSILETDYFRDIDVAVYVDESVKNYLKYEISLAV
Sbjct: 1   MKRCEIEEKLKKILEKHREVIFAYLHGSILETDYFRDIDVAVYVDESVKNYLKYEISLAV 60

Query: 61  ELEKEISMEVDVRVLNDAPPAFRYRAIKGKLLVSRDEKKRLNFVERTVEEYLDFEPIERI 120
           ELEKEISMEVDVRVLNDAPPAFRYRAIKGKLLVSRDEKKRLNFVERTVEEYLDFEPIERI
Sbjct: 61  ELEKEISMEVDVRVLNDAPPAFRYRAIKGKLLVSRDEKKRLNFVERTVEEYLDFEPIERI 120

Query: 121 MRKELLAD 128
           MRKELLAD
Sbjct: 121 MRKELLAD 128


>pir||C71157 hypothetical protein PH0458 - Pyrococcus horikoshii
           >gi|3256861|dbj|BAA29544.1| (AP000002) 129aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 129
           
 Score =  181 bits (455), Expect = 2e-45
 Identities = 86/123 (69%), Positives = 107/123 (86%)

Query: 5   EIEEKLKKILEKHREVIFAYLHGSILETDYFRDIDVAVYVDESVKNYLKYEISLAVELEK 64
           EIEEK++K LE H E+IFAYLHGS L T+ F DID+AVYVD+SV++YL+YE+SLAVELE+
Sbjct: 2   EIEEKIRKALEGHHEIIFAYLHGSFLVTEGFMDIDIAVYVDDSVRDYLEYELSLAVELER 61

Query: 65  EISMEVDVRVLNDAPPAFRYRAIKGKLLVSRDEKKRLNFVERTVEEYLDFEPIERIMRKE 124
            I  +VDVRVLNDAPPAFRYRAIKGK+++ RD + RLNF+ERTV EYLD+EP+ER MR+E
Sbjct: 62  MIGKDVDVRVLNDAPPAFRYRAIKGKVILDRDPEVRLNFIERTVWEYLDYEPLERRMREE 121

Query: 125 LLA 127
            L+
Sbjct: 122 FLS 124


>pir||B75034 hypothetical protein PAB1545 - Pyrococcus abyssi (strain Orsay)
           >gi|5458680|emb|CAB50167.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 135
           
 Score =  115 bits (285), Expect = 2e-25
 Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 2/125 (1%)

Query: 2   KRCEIEEKLKKILEKHREVIFAYLHGSILETDYFRDIDVAVYVDESVKNYLKYEISLAVE 61
           ++ EI  KL+K L K  EV+FAYLHGS L+   FRDIDVAVYV ++V  +  YE+ L  E
Sbjct: 11  RKKEIISKLRKALVKKDEVLFAYLHGSFLDDGPFRDIDVAVYVVKTVGRF--YEMELEEE 68

Query: 62  LEKEISMEVDVRVLNDAPPAFRYRAIKGKLLVSRDEKKRLNFVERTVEEYLDFEPIERIM 121
           L + +   VDVR+LNDAP  FR+RAI G+LL S+DEK+R  F E T+ EY D      + 
Sbjct: 69  LSRLVGFPVDVRILNDAPVTFRFRAIGGELLFSKDEKRRCMFEEITMAEYHDQLYYLELY 128

Query: 122 RKELL 126
           R+E+L
Sbjct: 129 RREVL 133


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42883327
Number of Sequences: 2977
Number of extensions: 1563400
Number of successful extensions: 6962
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6958
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 189,106,746
effective HSP length: 56
effective length of query: 72
effective length of database: 155,591,474
effective search space: 11202586128
effective search space used: 11202586128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)