BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2343 (nadB) DE:L-ASPARTATE OXIDASE (EC 1.4.3.16)
(QUINOLINATE SYNTHETASE B)
(464 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75186 L-aspartate oxidase (EC 1.4.3.16) PAB2343 - Pyrococc... 924 0.0
pir||D71219 probable L-aspartate oxidase - Pyrococcus horikoshii... 809 0.0
pir||B70368 L-aspartate oxidase - Aquifex aeolicus >gi|2983344|g... 295 6e-79
gb|AAK41268.1| Aspartate oxidase (nadB) [Sulfolobus solfataricus] 258 8e-68
pir||A82621 L-aspartate oxidase XF1924 [imported] - Xylella fast... 227 2e-58
pir||B82074 l-aspartate oxidase VC2469 [imported] - Vibrio chole... 225 7e-58
gi|11498289 succinate dehydrogenase, flavoprotein subunit A (sdh... 224 2e-57
pir||S77416 succinate dehydrogenase flavoprotein homolog - Synec... 224 2e-57
sp|P38032|NADB_BACSU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 222 8e-57
pir||OXECLD L-aspartate oxidase (EC 1.4.3.16) nadB [validated] -... 221 1e-56
emb|CAA31217.1| (X12714) L-aspartate oxidase (AA 1 - 540) [Esche... 220 2e-56
sp|P10902|NADB_ECOLI L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 220 2e-56
sp|P74562|NADB_SYNY3 L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 219 4e-56
sp|Q51363|NADB_PSEAE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 219 7e-56
sp|O06595|NADB_MYCTU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 216 4e-55
dbj|BAB04937.1| (AP001511) L-aspartate oxidase [Bacillus halodur... 212 6e-54
pir||T36393 L-aspartate oxidase - Streptomyces coelicolor >gi|45... 208 1e-52
pir||C70353 succinate dehydrogenase (EC 1.3.99.1) flavoprotein -... 208 1e-52
pir||F72691 probable fumarate reductase flavoprotein subunit APE... 205 9e-52
gb|AAK42509.1| Succinate dehydrogenase subunit A (sdhA) [Sulfolo... 200 3e-50
emb|CAC04215.1| (AL391515) putative oxidoreductase [Streptomyces... 198 1e-49
pir||D69067 succinate dehydrogenase, flavoprotein subunit - Meth... 195 1e-48
pir||D81881 probable succinate dehydrogenase (EC 1.3.99.1) flavo... 193 4e-48
pir||F81138 succinate dehydrogenase, flavoprotein chain NMB0950 ... 193 4e-48
pir||T50536 succinate dehydrogenase (EC 1.3.99.1) chain A [valid... 190 2e-47
sp|Q60356|Y033_METJA HYPOTHETICAL FAD FLAVOPROTEIN OXIDASE MJ003... 190 2e-47
sp|Q49617|NADB_MYCLE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 190 3e-47
pir||T45162 succinate dehydrogenase (EC 1.3.99.1) chain A [impor... 190 3e-47
sp|P44894|FRDA_HAEIN FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi... 189 6e-47
emb|CAA04398.1| (AJ000941) Thiol:fumarate reductase subunit A [M... 188 1e-46
pir||H81203 l-aspartate oxidase NMB0392 [imported] - Neisseria m... 188 1e-46
emb|CAC12130.1| (AL445066) probable fumarate reductase (frdA) [T... 187 2e-46
gb|AAG22257.1| (AE003796) Scs-fp gene product [Drosophila melano... 187 2e-46
pir||E81780 L-aspartate oxidase (EC 1.4.3.16) NMA2092 [imported]... 186 4e-46
pir||T51421 L-aspartate oxidase-like protein - Arabidopsis thali... 184 2e-45
gb|AAB34901.1| (S78630) succinate-ubiquinone oxidoreductase; fum... 183 3e-45
pir||T15398 hypothetical protein C03G5.1 - Caenorhabditis elegan... 183 3e-45
sp|Q09508|DHSA_CAEEL SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP... 182 6e-45
gb|AAG19651.1| (AE005053) succinate dehydrogenase subunit A; Sdh... 180 2e-44
dbj|BAA84681.1| (AB031741) succinate dehydrogenase [Trypanosoma ... 180 3e-44
dbj|BAA31212.1| (AB015756) succinate dehydrogenase flavoprotein ... 179 5e-44
pir||G75456 succinate dehydrogenase, flavoprotein subunit - Dein... 179 5e-44
pir||E70843 probable flavoprotein subunit of succinate dehydroge... 179 7e-44
pir||T32885 hypothetical protein C34B2.7 - Caenorhabditis elegan... 178 9e-44
gb|AAF21611.1|AF018287_5 (AF018287) SdhA; succinate dehydrogenas... 178 9e-44
gi|4759080 succinate dehydrogenase complex, subunit A, flavoprot... 177 2e-43
sp|P31040|DHSA_HUMAN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP... 177 2e-43
dbj|BAA21636.1| (D30650) flavoprotein subunit of complex II [Asc... 176 6e-43
gb|AAG20080.1| (AE005087) L-aspartate oxidase; NadB [Halobacteri... 176 6e-43
gb|AAD51006.1| (AF171030) succinate dehydrogenase flavoprotein s... 174 2e-42
pir||E83448 succinate dehydrogenase (A subunit) PA1583 [imported... 174 2e-42
sp|P20922|FRDA_PROVU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi... 173 3e-42
gb|AAD01243.1| (AF005272) fumarate reductase flavoprotein subuni... 173 4e-42
sp|P00363|FRDA_ECOLI FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi... 173 5e-42
pdb|1FUM|A Chain A, Structure Of The E. Coli Fumarate Reductase ... 173 5e-42
gb|AAF21045.1|AF211482_1 (AF211482) SdhA [Dictyostelium discoideum] 172 7e-42
gi|6322701 flavoprotein subunit of succinate dehydrogenase; Sdh1... 171 1e-41
gb|AAA23437.1| (J01611) fumarate reductase flavoprotein subunit ... 171 1e-41
pir||F82050 fumarate reductase, flavoprotein chain VC2656 [impor... 171 1e-41
pir||T44962 succinate dehydrogenase chain A homolog [imported] -... 171 2e-41
sp|P51054|DHSA_COXBU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI... 170 3e-41
sp|Q94523|DHSA_DROME SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP... 168 1e-40
emb|CAB89075.1| (AL353872) putative succinate dehydrogenase flav... 168 1e-40
sp|P31038|DHSA_RICPR SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI... 168 2e-40
gb|AAC17942.1| (AF007569) succinate dehydrogenase flavoprotein s... 167 2e-40
pir||T50081 probable succinate dehydrogenase (ubiquinone) (EC 1.... 167 2e-40
sp|Q59661|DHSA_PARDE SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI... 167 2e-40
dbj|BAA31215.1| (AB015757) fumarate reductase flavoprotein subun... 166 4e-40
pir||G82118 succinate dehydrogenase, flavoprotein chain VC2089 [... 165 1e-39
gb|AAC72373.1| (AF095938) succinate dehydrogenase Fp subunit [Mu... 164 1e-39
pir||C81388 succinate dehydrogenase (EC 1.3.99.1) flavoprotein C... 163 3e-39
pir||E82728 succinate dehydrogenase, flavoprotein subunit XF1072... 163 3e-39
sp|Q10760|FRDA_MYCTU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi... 163 4e-39
pir||A42792 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) fl... 163 4e-39
sp|P10444|DHSA_ECOLI SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI... 163 4e-39
emb|CAA25487.1| (X00980) succinate dehydrogenase (sdhA) flavopro... 162 7e-39
dbj|BAA13119.1| (D86573) flavoprotein subunit of succinate dehyd... 161 2e-38
gi|6322416 Yjl045wp [Saccharomyces cerevisiae] >gi|1352266|sp|P4... 158 1e-37
pir||T51815 succinate dehydrogenase (EC 1.3.99.1) flavoprotein a... 158 1e-37
emb|CAA54872.1| (X77919) putative succinate dehydrogenase large ... 157 2e-37
gb|AAC72374.1| (AF095939) succinate dehydrogenase Fp subunit [Ga... 157 3e-37
gb|AAD15493.1| (AC006439) putative succinate dehydrogenase flavo... 156 6e-37
pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reducta... 151 1e-35
emb|CAA74087.1| (Y13760) putative flavoprotein subunit [Shewanel... 150 2e-35
sp|Q59767|NADB_RHORU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE... 150 4e-35
pir||C72035 succinate dehydrogenase, flavoprotein chain CP1083 [... 148 2e-34
pir||B81655 succinate dehydrogenase, flavoprotein chain TC0881 [... 147 2e-34
sp|P17412|FRDA_WOLSU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi... 145 8e-34
sp|P31039|DHSA_BOVIN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP... 145 1e-33
pir||G81384 succinate dehydrogenase (EC 1.3.99.1) flavoprotein C... 143 5e-33
pir||S73049 hypothetical protein L308_F3_120 - Mycobacterium lep... 143 5e-33
pir||T43189 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) fl... 142 7e-33
pir||E71494 probable succinate dehydrogenase - Chlamydia trachom... 140 3e-32
pir||D70939 hypothetical protein Rv0248c - Mycobacterium tubercu... 136 7e-31
dbj|BAB06811.1| (AP001517) succinate dehydrogenase flavoprotein ... 135 9e-31
emb|CAA69872.1| (Y08563) succinate dehydrogenase subunit A [Paen... 129 7e-29
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of... 129 9e-29
gb|AAF49990.1| (AE003543) CG5718 gene product [Drosophila melano... 128 1e-28
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed... 127 2e-28
sp|Q02469|FRDA_SHEFR FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT PRE... 123 3e-27
emb|CAB38558.1| (AJ132010) fumarate reductase flavocytochrome c3... 123 3e-27
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidima... 123 3e-27
pir||T16413 hypothetical protein F48E8.3 - Caenorhabditis elegan... 122 9e-27
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidima... 120 4e-26
pir||A27763 succinate dehydrogenase (EC 1.3.99.1) flavoprotein -... 118 2e-25
gb|AAG12518.1|AC011017_7 (AC011017) L3184.7 [Leishmania major] 115 1e-24
sp|P08065|DHSA_BACSU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI... 114 2e-24
gi|6320788 Yel047cp [Saccharomyces cerevisiae] >gi|418423|sp|P32... 107 3e-22
pir||JC5123 fumarate reductase (NADH) (EC 1.3.1.6) - yeast (Sacc... 105 1e-21
emb|CAB63172.1| (AL133469) putative reductase flavoprotein subun... 104 2e-21
pir||T43862 FAD flavoprotein oxidase [imported] - Clostridium pe... 104 3e-21
gb|AAC02811.1| (U76909) succinate dehydrogenase flavoprotein sub... 97 5e-19
emb|CAB37062.1| (AJ236923) ifc3 protein [Shewanella frigidimarina] 96 1e-18
pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A ... 96 1e-18
pir||S21302 succinate dehydrogenase (EC 1.3.99.1) flavoprotein -... 89 1e-16
>pir||C75186 L-aspartate oxidase (EC 1.4.3.16) PAB2343 - Pyrococcus abyssi
(strain Orsay) >gi|5457447|emb|CAB48938.1| (AJ248283)
L-ASPARTATE OXIDASE (EC 1.4.3.16) (QUINOLINATE
SYNTHETASE B) [Pyrococcus abyssi]
Length = 464
Score = 924 bits (2362), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI
Sbjct: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET 120
HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET
Sbjct: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET 120
Query: 121 GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY 180
GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY
Sbjct: 121 GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY 180
Query: 181 RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD 240
RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD
Sbjct: 181 RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD 240
Query: 241 GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL 300
GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL
Sbjct: 241 GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL 300
Query: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA
Sbjct: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
Query: 361 RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR 420
RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR
Sbjct: 361 RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR 420
Query: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV 464
LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV
Sbjct: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV 464
>pir||D71219 probable L-aspartate oxidase - Pyrococcus horikoshii
>gi|3256400|dbj|BAA29083.1| (AP000001) 464aa long
hypothetical L-aspartate oxidase [Pyrococcus horikoshii]
Length = 464
Score = 809 bits (2066), Expect = 0.0
Identities = 392/464 (84%), Positives = 435/464 (93%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
M++M VGIVGGGLAGL AAI+L EKG DVSIIGP+S DSNSYLAQAGIA PL+EGDSIRI
Sbjct: 1 MMEMRVGIVGGGLAGLTAAIALAEKGFDVSIIGPRSTDSNSYLAQAGIALPLLEGDSIRI 60
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET 120
HVLDTI+AGKYINDEE+VWNVISKS+EA+ FL SHGVTFTGNELEGGHS+PR+FTIKSET
Sbjct: 61 HVLDTIKAGKYINDEEIVWNVISKSSEAHDFLTSHGVTFTGNELEGGHSYPRIFTIKSET 120
Query: 121 GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY 180
GKH+IPILEKHAREL VNF+RGFVEEIGI NGKLAGVFL GELLKFDAVV+A GGFSGLY
Sbjct: 121 GKHIIPILEKHARELDVNFIRGFVEEIGINNGKLAGVFLQGELLKFDAVVIAAGGFSGLY 180
Query: 181 RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD 240
RFTAGVK NIGLLIGD+ALKGVPLRDMEFVQFHPTGFIG+RTYLITEAVRGAGAKLVTGD
Sbjct: 181 RFTAGVKNNIGLLIGDVALKGVPLRDMEFVQFHPTGFIGKRTYLITEAVRGAGAKLVTGD 240
Query: 241 GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL 300
GERFVNELETRD+VARAIY+KMLEGKGVFLDARGIE+FKDRFPY+YSVL+ EGI+P KDL
Sbjct: 241 GERFVNELETRDIVARAIYMKMLEGKGVFLDARGIENFKDRFPYIYSVLRGEGINPEKDL 300
Query: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
IP+TPVAHYT+GGISVD FYRTRI+GLYAIGE+A NGFHGANRLASNSLLECVVSGLEVA
Sbjct: 301 IPITPVAHYTIGGISVDAFYRTRIKGLYAIGESACNGFHGANRLASNSLLECVVSGLEVA 360
Query: 361 RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR 420
RTI RE+PKR NDAPY+F+ELGDVDSIRE++WNHAGIVRD+ SL EGL+KL+ +E D+R
Sbjct: 361 RTISREKPKREVNDAPYSFNELGDVDSIREVLWNHAGIVRDEWSLREGLRKLKEIEVDER 420
Query: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV 464
LK+VAKAV+ AL+REESRG+HYR+D+PFMRKEFE SFF+ NV
Sbjct: 421 LKLVAKAVIISALKREESRGAHYRKDYPFMRKEFEHSSFFYPNV 464
>pir||B70368 L-aspartate oxidase - Aquifex aeolicus >gi|2983344|gb|AAC06932.1|
(AE000707) L-aspartate oxidase [Aquifex aeolicus]
Length = 510
Score = 295 bits (748), Expect = 6e-79
Identities = 186/494 (37%), Positives = 272/494 (54%), Gaps = 50/494 (10%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
+ +V I G G+ GL AISL E G++ I+ N+Y +Q GIA ++ DS +H
Sbjct: 16 EAKVLICGSGIGGLATAISLKELGIEPLIL--TRGIGNTYYSQGGIAAAVLPDDSPYLHY 73
Query: 63 LDTIRAGKYINDE--------EVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF 114
DT+RAG+Y+N E E ++ ++ F +G F LEGGHS PRV
Sbjct: 74 CDTLRAGRYLNHELHTKLLTYEGIFRILDLERWGVDFDKKNG--FYETTLEGGHSKPRVL 131
Query: 115 TIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGE----LLKFDAVV 170
+K TG+ + L K ELG+ + G ++EI I+ + GV + E ++ ++
Sbjct: 132 KVKDYTGREIYTKLLKKTEELGIKILHGELQEIIIEENGVQGVIYSEEGSLKFIRTPLLI 191
Query: 171 VATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVR 230
+ATGG + +Y +T+ K+ G IG G +++ EFVQFHPT G LI+EAVR
Sbjct: 192 LATGGAASMYYYTSNPKKVRGDAIGIAFRMGATVKNPEFVQFHPTVLKGTNL-LISEAVR 250
Query: 231 GAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDARGIED----FKDRFPYVY 286
G GA LV GERFVNEL RD VARAIY ++ G+ V+LD R + ++RFP +Y
Sbjct: 251 GEGAILVNDRGERFVNELLPRDEVARAIYNQIKRGREVYLDLRPVAQKGIKIEERFPTIY 310
Query: 287 SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLAS 346
S L++ G DP ++ +P+ P AHY +GGI VD RT I+GLYA+GE + G HGANRLAS
Sbjct: 311 SFLRERGYDPYREPVPIIPAAHYYIGGIEVDDRGRTSIQGLYAVGECSCTGIHGANRLAS 370
Query: 347 NSLLECVVSGLEVARTILRE-----------EPKRGANDAPYNFDELGDVDSIREIMWNH 395
NSLLE VV G A + + +R +D P LG ++ ++++MWN+
Sbjct: 371 NSLLEGVVFGHRTAYQVYLDLKILKPSKVNFRSERAGSDKP----NLG-IEELKKLMWNY 425
Query: 396 AGIVRDKSSLLEGLKKLEGVEADQR-------------LKVVAKAVLTLALEREESRGSH 442
G+ RD+ L K++ V + + + +VA + AL R+ESRG H
Sbjct: 426 VGLERDEEGLTYVKKRILSVLSQAKHWEPTPQNRQLYDILLVALCTVEGALMRKESRGVH 485
Query: 443 YRRDFPFMRKEFER 456
YR+D+P R+ + R
Sbjct: 486 YRKDYPTEREVYRR 499
>gb|AAK41268.1| Aspartate oxidase (nadB) [Sulfolobus solfataricus]
Length = 487
Score = 258 bits (653), Expect = 8e-68
Identities = 182/463 (39%), Positives = 249/463 (53%), Gaps = 33/463 (7%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLDTIR 67
I G GLAGL AAISL + G V+II K +SY A+ GIA + DS +H +DT+
Sbjct: 19 IFGSGLAGLSAAISLHKSGYKVTIISKKINGGSSYWAKGGIAAAVGNDDSPELHKIDTLE 78
Query: 68 AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-ELEGGHSHPRVFTIKSETGKHVIP 126
G + D + V V + S + G F + LEGGHS R+ +TG+ +
Sbjct: 79 VGDGLCDSKTVDYVTREIRYVVSTVEKWGFKFDDDLRLEGGHSKRRILHKTDDTGREITN 138
Query: 127 ILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFTA 184
L A++ G+N + + + +K+GK+AG F+ + FDA VV+ATGG+ L++FT+
Sbjct: 139 FLLNLAKKKGINLIEDKLLALKVKDGKVAG-FITEKGGSFDAEKVVLATGGYGYLFKFTS 197
Query: 185 GVKENIGLLIGDLALKGVPLRDMEFVQFHPT--GFIGRRTYLITEAVRGAGAKLVTGDGE 242
NIG I G + D EFVQFHPT F G+ YL+TE +RG GA LV E
Sbjct: 198 NPSTNIGDGIAIAFKAGALVSDTEFVQFHPTVTTFDGQ-AYLLTETLRGEGAILVNERNE 256
Query: 243 RFV------NELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDP 296
RFV EL RDV++RAIY + +G V++D IEDF +FP + + +K+ G
Sbjct: 257 RFVFKYDSRGELAPRDVLSRAIYDQYKKGHTVYIDLSPIEDFDRKFPILSNYVKRYG--- 313
Query: 297 GKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG 356
+ V P HYT+GGI V+ + I+GLYAIGE G HGANRLASNSL E +V G
Sbjct: 314 --KRLQVFPGVHYTIGGIRVNTRGESNIKGLYAIGEVTDTGLHGANRLASNSLAEDLVYG 371
Query: 357 LEVARTILR------EEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLK 410
+ + R I ++ K N ++ IRE WN+ GIVR+ EGL
Sbjct: 372 VNLVRYIDNWEGLSIDDVKEVIEVRLRNSSNRLSLEEIREYNWNYLGIVRNG----EGLD 427
Query: 411 KLEGV-EADQRLKVVAKAVLTL----ALEREESRGSHYRRDFP 448
KL + E++ A V L AL R ESRG+HYR D+P
Sbjct: 428 KLVKIYESNDTFNDNASLVSLLSAKGALLRTESRGAHYREDYP 470
>pir||A82621 L-aspartate oxidase XF1924 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9107024|gb|AAF84730.1|AE004012_4 (AE004012)
L-aspartate oxidase [Xylella fastidiosa]
Length = 512
Score = 227 bits (573), Expect = 2e-58
Identities = 166/476 (34%), Positives = 234/476 (48%), Gaps = 28/476 (5%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLDTIR 67
IVG GLAGL+AA+++ + + +++S AQ G++ L D+ +H+ DT+
Sbjct: 14 IVGSGLAGLIAALTMSPEPSVLVTRSALGAETSSAWAQGGMSVSLSPDDNPSLHLADTLA 73
Query: 68 AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFTIKSE- 119
AG + D ++I ++ +A+ L G+ F + LE HS R+ + +
Sbjct: 74 AGDGLCDAVAAESIILEALDAFHVLQHFGIHFDQDSNGHLALGLEAAHSRRRIVHVGGDR 133
Query: 120 TGKHVIPILEKHA-RELGVNFVRGF-VEEIGIKNGKLAGVFLNGE----LLKFDAVVVAT 173
+G ++ L + + + G I + + + G+ L +L +++AT
Sbjct: 134 SGTAIVQALTACVLNDPSITVLEGLEARHILMADNVVCGLLLANPTSEIVLPSSRILLAT 193
Query: 174 GGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI--GRRTYLITEAVRG 231
GG GLY T N G I A G L DMEFVQFHPT R L++EAVRG
Sbjct: 194 GGIGGLYDATTNPVSNFGQGIAMAARAGAVLADMEFVQFHPTALHCHNRPLALVSEAVRG 253
Query: 232 AGAKLVTGDGERFVN-----ELETRDVVARAIYLKMLEGKGVFLDARGI--EDFKDRFPY 284
GA L+ GERF+ EL R++VA+AI ++ G VFLDAR F RFP
Sbjct: 254 EGAVLINERGERFMADIPGAELAARNIVAQAISAEITRGGQVFLDARQALGARFSTRFPT 313
Query: 285 VYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRL 344
+ ++ K GIDP IPV P AHY MGGI++D R+ I GL+ GEAAS G HGANRL
Sbjct: 314 ITALCHKVGIDPVHMPIPVCPAAHYHMGGIAIDHQGRSSIPGLWVAGEAASTGLHGANRL 373
Query: 345 ASNSLLECVVSGLEVARTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSS 404
ASNSLLE VV G AR I P + D IR I+ G++R +
Sbjct: 374 ASNSLLEAVVMGTRAARDITFHNTPHPLGTIPIT-PKKPDTTLIRPIVSQCLGVLRHAAD 432
Query: 405 LLEGLKKL----EGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
+ + L EG E +VA + A R ESRG+H R DFP +R
Sbjct: 433 MHRAIAALLPFVEGEEESSDPAIVALLIAIFAYLRTESRGAHARTDFPLKHDTTQR 488
>pir||B82074 l-aspartate oxidase VC2469 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657047|gb|AAF95611.1| (AE004316)
l-aspartate oxidase [Vibrio cholerae]
Length = 550
Score = 225 bits (568), Expect = 7e-58
Identities = 173/518 (33%), Positives = 257/518 (49%), Gaps = 81/518 (15%)
Query: 5 EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
+V ++G G AGL A+ + + G V V GP+S+ + Y AQ GIA E DSI HV
Sbjct: 25 DVLVIGSGAAGLSLALQVAQYGKVIVLSKGPRSEGATFY-AQGGIAAVFDESDSIESHVQ 83
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE------------LEGGHSHP 111
DT+ AG I DE+ V + + E +L+ GV F E EGGHSH
Sbjct: 84 DTLIAGAGICDEQTVRFIAEHAKECVQWLIDGGVPFDKEEDSDNDHPRYHLTREGGHSHR 143
Query: 112 RVFTIKSETGKHV-------------IPILEKH-ARELGVNFVRGFVEEIGIKNGKLAGV 157
R+ TG + I +LE+H A +L ++IG K+ G
Sbjct: 144 RILHAADATGMAMQTSLQDNAHNHPNITVLERHNALDLITE------DKIGGDANKVVGA 197
Query: 158 FL------NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQ 211
++ + E ++ VV+ATGG S +Y++T+ + G I G + ++EF Q
Sbjct: 198 YVWNRNAEHVETIRAKFVVLATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQ 257
Query: 212 FHPTGFIG--RRTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAI--YLK 261
FHPT R +L+TEA+RG GA L DG RF+ EL RD+VARAI +K
Sbjct: 258 FHPTCLYHPEARNFLLTEALRGEGAYLRRPDGSRFMPDFDERAELAPRDIVARAIDFEMK 317
Query: 262 MLEGKGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
L ++LD + + + FP +YS L GID K+ IP+ P AHYT GG+ V+
Sbjct: 318 RLGADCMYLDISHKPADFIEKHFPTIYSRLMDLGIDMTKEPIPIVPAAHYTCGGVMVNPQ 377
Query: 320 YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAPYNF 379
+T ++ LYAIGE + G HGANR+ASNSLLECVV ++ I+ + P ++ +
Sbjct: 378 GQTDLKQLYAIGEVSYTGLHGANRMASNSLLECVVYAWSASQDIIAQLPNASMPESLPAW 437
Query: 380 DELGDVDSIREI------------MWNHAGIVRDKSSLLEGLKKLEGVEAD--------- 418
DE S E+ MW++ GIVR L +++++ ++ +
Sbjct: 438 DESQVTCSDEEVVLQHNWHELRLFMWDYMGIVRTNKRLERAMRRIQLLQQETHEYYSNFR 497
Query: 419 --------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ L VA+ ++ A++R+ESRG HY D+P
Sbjct: 498 VSNNLLEMRNLLQVAELMVRCAMQRKESRGLHYTLDYP 535
>gi|11498289 succinate dehydrogenase, flavoprotein subunit A (sdhA)
[Archaeoglobus fulgidus] >gi|7431672|pir||A69335
succinate dehydrogenase (EC 1.3.99.1) flavoprotein -
Archaeoglobus fulgidus >gi|2649933|gb|AAB90557.1|
(AE001057) succinate dehydrogenase, flavoprotein subunit
A (sdhA) [Archaeoglobus fulgidus]
Length = 563
Score = 224 bits (564), Expect = 2e-57
Identities = 177/528 (33%), Positives = 264/528 (49%), Gaps = 85/528 (16%)
Query: 2 IDMEVGIVGGGLAGLVAAISLVEKGVDVSI-IGPKSKD--SNSYLAQAGIAFPLVEGDSI 58
++ ++ IVG G+AG+ AAI+ EK +SI + K+ +S A+ G A L EGDS
Sbjct: 1 MEHDIVIVGAGIAGMRAAIAAAEKSRKLSIALIAKTYPIRCHSVCAEGGTAAVLREGDSF 60
Query: 59 RIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP 111
+H DT++ ++ D++ V + + + L + G ++ NE GGHS
Sbjct: 61 DLHAWDTVKGADFLADQDAVEFFVRECPKEIIRLENWGCPWSRNEDGTIAQRPFGGHSFN 120
Query: 112 RVFTIKSETGKHVIPILEKHARELGVN----FVRGFVEEIGIKNGKLAGV----FLNGEL 163
R K TG H + L + R L + F F+ + I+NG + GV GE+
Sbjct: 121 RATYAKDRTGFHEVHTL--YERMLMYDNVEIFPEYFITNLAIENGAVQGVSAIQLKTGEM 178
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
F+A V+ ATGG LY FT + G + G+PL+DMEF QFHPTG +
Sbjct: 179 EFFEAKAVIFATGGAGRLYGFTTYSHQVTGDGLAIAYRNGIPLKDMEFFQFHPTGLVPSG 238
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------- 267
L+TE RG G L+ +GERF+ E+ RDVV+RA++ +++EG+G
Sbjct: 239 I-LMTEGCRGEGGYLLNKNGERFMKRYAPEKMEIAPRDVVSRAMWTEIIEGRGFEGEYGP 297
Query: 268 -VFLDAR--GIEDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
+ LD R G E ++R P + + +K G+DP ++ IPV PVAHYTMGGI ++ T
Sbjct: 298 YIALDLRHLGEEKIEERLPLIRDAAIKFAGVDPVEEPIPVRPVAHYTMGGIDTNVRCETA 357
Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE---EPKRGANDAPYN-- 378
++G +A GE A HGANRL SNS EC+V G VA + E + K+G A +
Sbjct: 358 VKGFFAAGECACVSIHGANRLGSNSTAECLVFG-RVAGEVAAEYALKAKQGKISAEFREK 416
Query: 379 -----FDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR--- 420
FDEL GD + E M + I R++ L E +KK++ ++ R
Sbjct: 417 EEKRIFDELLGKSGDESPYQIKKELNETMEANMWIFREEKGLKEAVKKIKELKERYRNVE 476
Query: 421 --------------------LKVVAKAVLTLALEREESRGSHYRRDFP 448
+ +A+ V AL+R+ESRG+HYR D+P
Sbjct: 477 INDKSRGFNTDLTSAIEIGYMLDLAEVVAIGALKRQESRGAHYRLDYP 524
>pir||S77416 succinate dehydrogenase flavoprotein homolog - Synechocystis sp.
(strain PCC 6803) >gi|1652598|dbj|BAA17519.1| (D90906)
succinate dehydrogenase flavoprotein subunit
[Synechocystis sp.]
Length = 575
Score = 224 bits (564), Expect = 2e-57
Identities = 176/539 (32%), Positives = 253/539 (46%), Gaps = 94/539 (17%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSI-IGPKSKD--SNSYLAQAGIAFPLVE--- 54
M++ +V IVGGGLAG AA+ + D + I K+ S+S AQ GIA L
Sbjct: 1 MLEQDVVIVGGGLAGCRAALEIKRLAPDTKVAIVAKTHPIRSHSVAAQGGIAASLKNVDA 60
Query: 55 GDSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGG 107
DS H DT++ Y+ D++ V + ++ E L GV F+ GG
Sbjct: 61 EDSWEAHAFDTVKGSDYLADQDAVEILTKEAPEVIIELEHLGVLFSRLPDGKIAQRAFGG 120
Query: 108 HSHPRVFTIKSETGKHVIPILEKHARELGVN-----FVRGFVEEIGIKNGKLAGVFLNG- 161
HSH R +TG ++ L + R V +V + E G G + G
Sbjct: 121 HSHNRTCYAADKTGHAILHELVNNLRRNKVEIYDEWYVMKLIYEEGEAKGLVMYEIATGR 180
Query: 162 -ELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF--I 218
E+++ AV+VATGG+ +Y T+ + G + A+ G+PL DMEFVQFHPTG +
Sbjct: 181 IEIVRAKAVMVATGGYGRVYNTTSNDYASTGDGLAMAAIAGIPLEDMEFVQFHPTGLYPV 240
Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG---- 267
G LI+EAVRG GA L+ +G RF+ EL RD+ +RAI L++ G+G
Sbjct: 241 G---VLISEAVRGEGAYLINSEGRRFMEDYAPSRMELAPRDITSRAITLEIRAGRGVNAD 297
Query: 268 -------VFLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVD 317
V+LD R G E R P+ + + GID + +PV P HY MGGI V+
Sbjct: 298 GSAGGPYVYLDLRHMGREKIMSRIPFCWEEAHRLVGIDAVEQPMPVRPTVHYCMGGIPVN 357
Query: 318 IFYRTR------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRG 371
R R G +A GE A HG NRL SNSLLECVV G R+I R
Sbjct: 358 TDGRVRKNANELTEGFFAAGECACVSVHGGNRLGSNSLLECVVYGRRTGRSIAEYVQGRS 417
Query: 372 ---ANDAPYNFDELGDVDSI----------------REIMWNHAGIVRDKSSLLEGLKKL 412
++A Y + +D + ++ M +H G+ R +S + EGL+++
Sbjct: 418 LPEIDEAVYKTEAQTRIDQLLNQQGTVRINTLRQAFQDCMTSHCGVFRSESFMAEGLEQV 477
Query: 413 EGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ ++A Q + V + +LT A++R+ESRGSH R DFP
Sbjct: 478 QNLKAQYGQIFLDDKQPQWNTEVIEALELQSIMAVGELILTSAIQRQESRGSHAREDFP 536
>sp|P38032|NADB_BACSU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|421511|pir||C47071 L-aspartate oxidase (EC 1.4.3.16)
nadB - Bacillus subtilis >gi|547611|gb|AAA21614.1|
(M98822) L-aspartate oxidase [Bacillus subtilis]
>gi|2635252|emb|CAB14747.1| (Z99118) L-aspartate oxidase
[Bacillus subtilis]
Length = 531
Score = 222 bits (559), Expect = 8e-57
Identities = 168/497 (33%), Positives = 244/497 (48%), Gaps = 42/497 (8%)
Query: 6 VGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
+ ++G G A L A + +V++I KS K+SNS AQ GIA + DSI H+ D
Sbjct: 6 IAVIGSGAAALSLAAAF-PPSYEVTVITKKSVKNSNSVYAQGGIAAAYAKDDSIEAHLED 64
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL-------EGGHSHPRVFTIK 117
T+ AG N+ +V +V+ L+ G F NE EG HS+ R+F
Sbjct: 65 TLYAGCGHNNLAIVADVLHDGKMMVQSLLERGFPFDRNERGGVCLGREGAHSYNRIFHAG 124
Query: 118 SE-TGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNG-----ELLKFDAVVV 171
+ TG+ +I L K ++ I++G+ GV ++ D VV+
Sbjct: 125 GDATGRLLIDYLLKRINSKIKLIENETAADLLIEDGRCIGVMTKDSKGRLKVRHADEVVL 184
Query: 172 ATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI--GRRTYLITEAV 229
A GG L+ G + G L D+EF QFHPT + G L++EAV
Sbjct: 185 AAGGCGNLFLHHTNDLTVTGDGLSLAYRAGAELTDLEFTQFHPTLLVKNGVSYGLVSEAV 244
Query: 230 RGAGAKLVTGDGERFVNE------LETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFP 283
RG G LV +G R + E L RD+V+R I+ +M +G V++D I DF+ RFP
Sbjct: 245 RGEGGCLVDENGRRIMAERHPLGDLAPRDIVSRVIHEEMAKGNRVYIDFSAISDFETRFP 304
Query: 284 YVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANR 343
+ ++ +K GID IPV P H+ MGG+SV+ + T + GLYAIGE A +G HGANR
Sbjct: 305 TITAICEKAGIDIHSGKIPVAPGMHFLMGGVSVNRWGETTVPGLYAIGETACSGLHGANR 364
Query: 344 LASNSLLECVVSGLEVARTILREEPKRGANDAPYN---FDELGDVD--SIREIMWNHAGI 398
LASNSLLE +V G A I+++ + F E+ D++ ++ M +H I
Sbjct: 365 LASNSLLEALVFGKRAAEHIIQKPVYNRQYQSGLETSVFYEVPDIEGHELQSKMTSHMSI 424
Query: 399 VRDKSSLLE---GLKKLEGVEAD-----------QRLKVVAKAVLTLALEREESRGSHYR 444
+R++SSL+E L L E + L AK + AL REESRG+H+R
Sbjct: 425 LREQSSLIELSIWLHTLPFQEVNVKDITIRQMELSHLWQTAKLMTFSALLREESRGAHFR 484
Query: 445 RDFPFMRKEFERPSFFH 461
DFP ++ H
Sbjct: 485 TDFPHAEVSWQGRQIVH 501
>pir||OXECLD L-aspartate oxidase (EC 1.4.3.16) nadB [validated] - Escherichia
coli >gi|1788928|gb|AAC75627.1| (AE000344) quinolinate
synthetase, B protein [Escherichia coli K12]
Length = 540
Score = 221 bits (557), Expect = 1e-56
Identities = 178/516 (34%), Positives = 250/516 (47%), Gaps = 77/516 (14%)
Query: 5 EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
+V I+G G AGL A+ L ++ V V GP ++ S Y AQ GIA E DSI HV
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY-AQGGIAAVFDETDSIDSHVE 68
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF------TGNEL-----EGGHSHPR 112
DT+ AG I D V V S + +L+ GV F G E EGGHSH R
Sbjct: 69 DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 128
Query: 113 VFTIKSETGKHVIPILEKHA----------RELGVNFVRGFVEEIGIKNGK-LAGVFL-- 159
+ TG+ V L A R V+ + ++IG+ + + G ++
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVS--DKIGLPGTRRVVGAWVWN 186
Query: 160 ----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
E AVV+ATGG S +Y++T + G I G + ++EF QFHPT
Sbjct: 187 RNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246
Query: 216 GFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEG 265
R +L+TEA+RG GA L DG RF+ EL RD+VARAI +K L
Sbjct: 247 ALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGA 306
Query: 266 KGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
+FLD + + + FP +Y L GID ++ +P+ P AHYT GG+ VD RT
Sbjct: 307 DCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTD 366
Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND----APYNF 379
+ GLYAIGE + G HGANR+ASNSLLEC+V G A I R P A+D P++
Sbjct: 367 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPY--AHDISTLPPWDE 424
Query: 380 DELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD----------- 418
+ + D +R MW++ GIVR L L+++ ++ +
Sbjct: 425 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVS 484
Query: 419 ------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ L VA+ ++ A+ R+ESRG H+ D+P
Sbjct: 485 NNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYP 520
>emb|CAA31217.1| (X12714) L-aspartate oxidase (AA 1 - 540) [Escherichia coli]
Length = 540
Score = 220 bits (556), Expect = 2e-56
Identities = 178/516 (34%), Positives = 250/516 (47%), Gaps = 77/516 (14%)
Query: 5 EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
+V I+G G AGL A+ L ++ V V GP ++ S Y AQ GIA E DSI HV
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY-AQGGIAAVFDETDSIDSHVE 68
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF------TGNEL-----EGGHSHPR 112
DT+ AG I D V V S + +L+ GV F G E EGGHSH R
Sbjct: 69 DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 128
Query: 113 VFTIKSETGKHVIPILEKHA----------RELGVNFVRGFVEEIGIKNGK-LAGVFL-- 159
+ TG+ V L A R V+ + ++IG+ + + G ++
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVS--DKIGLPGTRRVVGAWVWN 186
Query: 160 ----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
E AVV+ATGG S +Y++T + G I G + ++EF QFHPT
Sbjct: 187 RNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246
Query: 216 GFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEG 265
R +L+TEA+RG GA L DG RF+ EL RD+VARAI +K L
Sbjct: 247 ALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGA 306
Query: 266 KGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
+FLD + + + FP +Y L GID ++ +P+ P AHYT GG+ VD RT
Sbjct: 307 DCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTD 366
Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND----APYNF 379
+ GLYAIGE + G HGANR+ASNSLLEC+V G A I R P A+D P++
Sbjct: 367 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPY--AHDISTLPPWDE 424
Query: 380 DELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD----------- 418
+ + D +R MW++ GIVR L L+++ ++ +
Sbjct: 425 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVS 484
Query: 419 ------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ L VA+ ++ A+ R+ESRG H+ D+P
Sbjct: 485 DNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYP 520
>sp|P10902|NADB_ECOLI L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|5542180|pdb|1CHU|A Chain A, Structure Of L-Aspartate
Oxidase: Implications For The Succinate Dehydrogenase
FUMARATE REDUCATSE FAMILY >gi|285776|dbj|BAA02446.1|
(D13169) L-aspartate oxidase [Escherichia coli]
>gi|987649|dbj|BAA10921.1| (D64044) L-aspartate oxidase
[Escherichia coli]
Length = 540
Score = 220 bits (556), Expect = 2e-56
Identities = 178/516 (34%), Positives = 250/516 (47%), Gaps = 77/516 (14%)
Query: 5 EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
+V I+G G AGL A+ L ++ V V GP ++ S Y AQ GIA E DSI HV
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY-AQGGIAAVFDETDSIDSHVE 68
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF------TGNEL-----EGGHSHPR 112
DT+ AG I D V V S + +L+ GV F G E EGGHSH R
Sbjct: 69 DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 128
Query: 113 VFTIKSETGKHVIPILEKHA----------RELGVNFVRGFVEEIGIKNGK-LAGVFL-- 159
+ TG+ V L A R V+ + ++IG+ + + G ++
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVS--DKIGLPGTRRVVGAWVWN 186
Query: 160 ----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
E AVV+ATGG S +Y++T + G I G + ++EF QFHPT
Sbjct: 187 RNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246
Query: 216 GFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEG 265
R +L+TEA+RG GA L DG RF+ EL RD+VARAI +K L
Sbjct: 247 ALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGA 306
Query: 266 KGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
+FLD + + + FP +Y L GID ++ +P+ P AHYT GG+ VD RT
Sbjct: 307 DCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTD 366
Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND----APYNF 379
+ GLYAIGE + G HGANR+ASNSLLEC+V G A I R P A+D P++
Sbjct: 367 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPY--AHDISTLPPWDE 424
Query: 380 DELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD----------- 418
+ + D +R MW++ GIVR L L+++ ++ +
Sbjct: 425 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVS 484
Query: 419 ------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ L VA+ ++ A+ R+ESRG H+ D+P
Sbjct: 485 NNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYP 520
>sp|P74562|NADB_SYNY3 L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|7431678|pir||S76757 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
>gi|1653758|dbj|BAA18669.1| (D90916) L-aspartate oxidase
[Synechocystis sp.]
Length = 553
Score = 219 bits (553), Expect = 4e-56
Identities = 180/531 (33%), Positives = 251/531 (46%), Gaps = 83/531 (15%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
+V +VG G AGL A + L + + K S AQ GIA + DS + H D
Sbjct: 7 DVVVVGSGAAGLYACLCLPGHYRVALVTKAELKTGASDWAQGGIAAAIAPTDSPQSHYED 66
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN------ELEGGHSHPRVFTIKS 118
T+ AG + D E V +++ + +A + LV GV+F + LE HS PRV
Sbjct: 67 TLAAGAGLCDGEAVDFLVNHAPQAIAELVQFGVSFDRHGQHLALTLEAAHSQPRVLHAAD 126
Query: 119 ETGKHVIPIL--EKHARELGVNFVRGFVEEIGIK--NGKLAG--VFLNGELLKFD--AVV 170
TG+ ++ L + AR F + + I+ G G VF+N + F AV+
Sbjct: 127 TTGRAIVSTLMGQVQARPNVEIFSQAIALSLNIEPTTGHCRGIQVFVNQTIETFHSRAVL 186
Query: 171 VATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI--GRRTYLITEA 228
+ATGG ++ T K + G I G +RD+EF QFHPT G +LI+EA
Sbjct: 187 LATGGGGQVFAQTTNPKVSTGDGIALAWRSGAQVRDLEFFQFHPTALTKPGVPHFLISEA 246
Query: 229 VRGAGAKLVTGDGERFV------NELETRDVVARAIYLKMLEGKG------VFLDARGIE 276
VRG GA L+ G+RF EL RDVV+RAI+ + + VFLD IE
Sbjct: 247 VRGEGAHLLDRQGKRFAFDYHPRGELAPRDVVSRAIFQHLANTEKDPTQATVFLDLSPIE 306
Query: 277 D--FKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAA 334
+ RFP + G+D ++ IPV P AHY MGGI+ DI +T I GLYA+GE A
Sbjct: 307 PERIQRRFPNIIRRCLHWGVDIFREPIPVAPAAHYWMGGITTDINCQTTIPGLYALGETA 366
Query: 335 SNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAPYN-------FDELGDV-- 385
S G HGANRLASNSLLEC+V ++ L P ++D+ N D D+
Sbjct: 367 STGVHGANRLASNSLLECIVFASQLRNLSL---PPLASSDSNVNQSIKEIRLDTTNDLAL 423
Query: 386 -----DSIREIMWNHAGIVRDKSSLLEGLKKLEG----------------VEADQRLKV- 423
+ +MW AGI R +L + KLE + DQ++ +
Sbjct: 424 LNHWRSELPRLMWQTAGICRQAETLQMAIAKLEQWQEQWQQLSSSKLLAHLPEDQKISLS 483
Query: 424 -------------------VAKAVLTLALEREESRGSHYRRDFPFMRKEFE 455
+A+ +LT AL REESRG HYR D P ++E++
Sbjct: 484 GPGLNEFMQLWAETHNLLDIAQLILTSALFREESRGGHYRLDCPDTKREWQ 534
>sp|Q51363|NADB_PSEAE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|11252563|pir||T46863 L-aspartate oxidase (EC
1.4.3.16) [validated] - Pseudomonas aeruginosa
>gi|11350532|pir||A83550 L-aspartate oxidase PA0761
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|608530|gb|AAA92356.1| (U17232) L-aspartate oxidase
[Pseudomonas aeruginosa]
>gi|9946649|gb|AAG04150.1|AE004511_3 (AE004511)
L-aspartate oxidase [Pseudomonas aeruginosa]
Length = 538
Score = 219 bits (551), Expect = 7e-56
Identities = 172/520 (33%), Positives = 251/520 (48%), Gaps = 73/520 (14%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
+V ++G G AGL A++L E + + ++Y AQ G+A L + D++ HV D
Sbjct: 8 DVLVIGSGAAGLSLALTLPEHLRIAVLSKGELSQGSTYWAQGGVAAVLDDTDTVESHVED 67
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------EGGHSH 110
T+ AG + E+ V + S EA +L+ GV FT +E EGGHSH
Sbjct: 68 TLVAGGGLCREDAVRFTVEHSREAIQWLIEQGVPFTRDEQHNHEEGSFEYHLTREGGHSH 127
Query: 111 PRVFTIKSETGKHVI----------PILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL- 159
R+ TG + P +E ++ + V+ + ++G+ + + G ++
Sbjct: 128 RRIIHAADATGAAIFNTLLAQARRRPNIELLSQRVAVDLITE--RKLGLPSKRCLGAYVL 185
Query: 160 ---NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHP 214
+GE+ F A V+A+GG S +Y +T+ N G I G + ++EF QFHP
Sbjct: 186 NRESGEVDTFRARFSVLASGGASKVYLYTSNPDGNSGDGIAMAWRAGCRVGNLEFNQFHP 245
Query: 215 TGFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLE 264
T +++LITEA+RG GA L +GERF+ EL RD+VARAI +K L
Sbjct: 246 TCLYHPQAKSFLITEALRGEGALLRLPNGERFMPRFDPRGELAPRDIVARAIDHEMKRLG 305
Query: 265 GKGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRT 322
V+LD + E K FP VY GID + IPV P AHYT GG+ VD T
Sbjct: 306 IDCVYLDISHKPAEFIKAHFPTVYERCLDFGIDITQQPIPVVPAAHYTCGGVLVDQHGHT 365
Query: 323 RIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP------KRGANDAP 376
+ GLYAIGE G HGANR+ASNSLLEC V A +L+ P + DA
Sbjct: 366 DVPGLYAIGETTFTGLHGANRMASNSLLECFVYARSAAADMLQRLPGTPVPESLPSWDAS 425
Query: 377 YNFDELGDV------DSIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD------------ 418
D DV D +R MW++ GIVR L ++ + ++
Sbjct: 426 QVTDSDEDVIIAHNWDELRRFMWDYVGIVRTNKRLQRAQHRVRLLLSEIDEFYSNYKVSR 485
Query: 419 -----QRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKE 453
+ L +VA+ ++ A++R ESRG HY D+P + E
Sbjct: 486 DLIELRNLALVAELIIRSAMQRRESRGLHYTLDYPDLLPE 525
>sp|O06595|NADB_MYCTU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|7449078|pir||E70543 probable L-aspartate oxidase -
Mycobacterium tuberculosis (strain H37RV)
>gi|2117242|emb|CAB09074.1| (Z95586) nadB [Mycobacterium
tuberculosis]
Length = 527
Score = 216 bits (545), Expect = 4e-55
Identities = 169/490 (34%), Positives = 237/490 (47%), Gaps = 49/490 (10%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD--SNSYLAQAGIAFPLVEGD-SIRIH 61
+V ++G G+AGL AA++ G V ++ ++ + ++ AQ GIA L + D S+ H
Sbjct: 11 DVVVIGTGVAGLAAALAADRAGRSVVVLSKAAQTHVTATHYAQGGIAVVLPDNDDSVDAH 70
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
V DT+ AG + D + V+++++ A + LV G + EGGHS R+
Sbjct: 71 VADTLAAGAGLCDPDAVYSIVADGYRAVTDLVGAGARLDESVPGRWALTREGGHSRRRIV 130
Query: 115 TIKSE-TGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL-----NGELLKFDA 168
+ TG V L+ A L + G V + +G L ++ +
Sbjct: 131 HAGGDATGAEVQRALQDAAGMLDIR--TGHVALRVLHDGTAVTGLLVVRPDGCGIISAPS 188
Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT----GFIGRRTYL 224
V++ATGG LY T + G I GV + D+EF+QFHPT G G R L
Sbjct: 189 VILATGGLGHLYSATTNPAGSTGDGIALGLWAGVAVSDLEFIQFHPTMLFAGRAGGRRPL 248
Query: 225 ITEAVRGAGAKLVTGDGERF------VNELETRDVVARAI--YLKMLEGKGVFLDARGIE 276
ITEA+RG GA LV G + +L RDVVA AI LK V+LDARGIE
Sbjct: 249 ITEAIRGEGAILVDRQGNSITAGVHPMGDLAPRDVVAAAIDARLKATGDPCVYLDARGIE 308
Query: 277 DFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASN 336
F RFP V + + GIDP + IPV P AHY+ GGI D++ +T + GLYA GE A
Sbjct: 309 GFASRFPTVTASCRAAGIDPVRQPIPVVPGAHYSCGGIVTDVYGQTELLGLYAAGEVART 368
Query: 337 GFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDA--------PYNFDELGDVDSI 388
G HGANRLASNSLLE +V G + G + A P ++ L D +
Sbjct: 369 GLHGANRLASNSLLEGLVVGGRAGKAAAAHAAAAGRSRATSSATWPEPISYTAL-DRGDL 427
Query: 389 REIMWNHAGIVRDKSSLLEGLKKLEGVEA----------DQRLKVVAKAVLTLALEREES 438
+ M A + R + L L G + D L +VA++V AL R ES
Sbjct: 428 QRAMSRDASMYRAAAGLHRLCDSLSGAQVRDVACRRDFEDVALTLVAQSVTAAALARTES 487
Query: 439 RGSHYRRDFP 448
RG H+R ++P
Sbjct: 488 RGCHHRAEYP 497
>dbj|BAB04937.1| (AP001511) L-aspartate oxidase [Bacillus halodurans]
Length = 509
Score = 212 bits (535), Expect = 6e-54
Identities = 167/488 (34%), Positives = 235/488 (47%), Gaps = 39/488 (7%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
D EV IVG G+A +++A L + + I SNS+LAQ GIA P+ EGD + H
Sbjct: 4 DGEVIIVGSGIAAMMSAYLLRKSFHVIMITKSDVFASNSFLAQGGIAAPIAEGDDWQAHT 63
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFT 115
DT +AG DE + + + L GV+F E LEG H R+
Sbjct: 64 ADTWKAGAAHGDETSIEMMTKHAVNMIELLDDLGVSFDREESGGYSLGLEGAHGTRRIVH 123
Query: 116 IK-SETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATG 174
+ +ETGK V+ L K + R V ++ GV + L +VATG
Sbjct: 124 VNGAETGKAVMRALWKAIKNEITLLDRTCVYRFIKNKDEIIGVETDQGSLFAPVTIVATG 183
Query: 175 GFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR---RTYLITEAVRG 231
G +Y T+ KE G I G + D+EF+QFHPT + G + LI+EAVRG
Sbjct: 184 GCGQMYSVTSNGKEATGDGIALAYRSGAAISDVEFIQFHPTVYTGNEKEKGLLISEAVRG 243
Query: 232 AGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKK 291
G +L+T GER + L++RDVV+R I+ + EG V LD GI DF+ +FP +Y K
Sbjct: 244 EGGQLITSAGER-LQSLKSRDVVSREIFRQEREGHTVHLDLTGISDFERKFPALYKGFNK 302
Query: 292 EGIDPGKDLIP-VTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLL 350
+ L P VTP AH+ GGISVD + +T + LYA+GE A G HGANRLASNSLL
Sbjct: 303 SD---RRTLKPRVTPGAHFLNGGISVDAWGQTSLSRLYAVGEVACTGVHGANRLASNSLL 359
Query: 351 ECVVSGLEVARTILREEPKRGA-------NDAPYNFDELGDVDSIREIMWNHAGIVRDKS 403
E +V + A I + A P +F +L + +++ M + GI R
Sbjct: 360 EGLVFAHQAATHIQQTFQPLTAGLFVERDKAEPRSF-KLPTREDLQKKMMRYVGIERHAR 418
Query: 404 SL---------------LEGLKKLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
SL G + + ++A + A R ESRG H+R D+P
Sbjct: 419 SLWYMNNWFQPFLDTAHYNGPWPERDMFEQANMTLLASLITRSAAIRTESRGGHFRADYP 478
Query: 449 FMRKEFER 456
+F++
Sbjct: 479 NGLDKFQQ 486
>pir||T36393 L-aspartate oxidase - Streptomyces coelicolor
>gi|4585614|emb|CAB40882.1| (AL049628) L-aspartate
oxidase [Streptomyces coelicolor A3(2)]
Length = 580
Score = 208 bits (523), Expect = 1e-52
Identities = 168/515 (32%), Positives = 244/515 (46%), Gaps = 70/515 (13%)
Query: 2 IDMEVGIVGGGLAGLVAAISLVEKGV-DVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
I +V +VG G+AGL AA+ G+ V + + D ++ AQ G+A L EGD+
Sbjct: 17 IAADVVVVGSGVAGLTAALRCESAGLRTVVVTKARLDDGSTRWAQGGVAAALGEGDTPEQ 76
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRV 113
H+ DT+ AG + D++ V ++++ +A L++ G F + EGGH R+
Sbjct: 77 HLDDTLVAGAGLCDQDAVRILVTEGPDAVRRLIATGAHFDESTEGGLALTREGGHHRRRI 136
Query: 114 FTIKSE-TGKHVIPILEKHARELGVNFVRG--FVEEIGIKNGKLAGVFLN--GE------ 162
+ TG + L + R G+ V ++ + G+ AGV L+ GE
Sbjct: 137 AHAGGDATGAEISRALVEAVRARGLRTVENALVLDLLTDAEGRTAGVTLHVMGEGQHDGV 196
Query: 163 -LLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG-FIGR 220
+ AVV+ATGG ++ T + G + G + D+EFVQFHPT F+G
Sbjct: 197 GAVHAPAVVLATGGMGQVFSATTNPSVSTGDGVALALRAGAEVSDLEFVQFHPTVLFLGS 256
Query: 221 ----RTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLE--GKGV 268
+ L++EAVRG GA LV DG RF+ EL RD+VA+AI +M E +
Sbjct: 257 DAEGQQPLVSEAVRGEGAHLVDADGVRFMQGRHELAELAPRDIVAKAITRRMQEHGADHM 316
Query: 269 FLDAR--GIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRG 326
+LDAR G ++ RFP + + + GIDP + +PV P AHY GG+ D RT + G
Sbjct: 317 YLDARHFGRTMWEHRFPTILAACRAHGIDPVTEPVPVAPAAHYASGGVRTDAHGRTTVPG 376
Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPK---RGANDAPYNFDELG 383
LYA GE A G HGANRLASNSLLE +V +A I AP +
Sbjct: 377 LYACGEVACTGVHGANRLASNSLLEGLVYAERIAADIAAAHTAGTLHARVPAPLPHPDHS 436
Query: 384 DVD-----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR------------ 420
+I+ IM AG++R SL +L G+ A+ R
Sbjct: 437 QHPRHPLLPPEARLTIQRIMTEGAGVLRSADSLARAADRLHGLHAEAREALHEHGKTSEP 496
Query: 421 ---------LKVVAKAVLTLALEREESRGSHYRRD 446
L VA+ ++ A REE+RG H+R D
Sbjct: 497 GVDTWEATNLLCVARVLVAAAARREETRGCHWRED 531
>pir||C70353 succinate dehydrogenase (EC 1.3.99.1) flavoprotein - Aquifex
aeolicus >gi|2983214|gb|AAC06812.1| (AE000697) fumarate
reductase flavoprotein subunit [Aquifex aeolicus]
Length = 571
Score = 208 bits (523), Expect = 1e-52
Identities = 179/526 (34%), Positives = 256/526 (48%), Gaps = 83/526 (15%)
Query: 5 EVGIVGGGLAGLVAAISLV-EKGVDVSIIGPKSKD-SNSYLAQAGIAFPL---VEGDSIR 59
+V ++GGG AGL AI + + + V+++ S++ AQ G+ L + DS
Sbjct: 7 DVVVIGGGGAGLRTAIEVAKDPNISVALVSKVYPTRSHTGAAQGGMNAALGNVIPDDSPE 66
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHPR 112
+H DTI+ ++ D++ V+ + K+ E L GV F+ GG S PR
Sbjct: 67 VHAYDTIKGSDFLADQDAVFFMTEKAPEIIYELDRWGVPFSRLPDGRIAQRPFGGASFPR 126
Query: 113 VFTIKSETGKHVIPILEKHA--RELGVNFVRGFVEEIGIKNGKLAGVFL----NGELL-- 164
+TG ++ L + A R+ F F+ ++ ++ GV + NGE+L
Sbjct: 127 TVFAADKTGHVLLHTLFEQALARDNITFFNEYFLLDLIHDGERVKGVTIYDIRNGEVLFL 186
Query: 165 KFDAVVVATGGFSGLYRF-TAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTY 223
+ AVV+ATGGF+ +Y F + N G GVPL+DMEF+QFHPTG + +
Sbjct: 187 QAKAVVLATGGFARIYWFRSTNAIGNTGDGQAVALRAGVPLKDMEFIQFHPTG-LAKTGI 245
Query: 224 LITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-------- 268
L++EA RG G L+ +GERF+ EL RD+V+RAI ++ EG+GV
Sbjct: 246 LLSEACRGEGGYLLNKEGERFMKRYAPDKMELAPRDIVSRAIETEIREGRGVGEGARAYV 305
Query: 269 FLDAR--GIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIFY--RTR 323
+LD R G E K+R P V + + EG+DP K+L+P+ P AHY MGGI V+ + T
Sbjct: 306 YLDLRHLGEEKIKERLPQVRQLAIDFEGVDPAKELVPIRPSAHYCMGGIHVENYKTSETP 365
Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGL---EVARTILRE---------EPKRG 371
++GLYA+GE A HGANRL NSL E VV G R ++E EPK+
Sbjct: 366 LKGLYAVGECACVSVHGANRLGGNSLTELVVFGKYCGMAVREFVKETDFAPVSESEPKKS 425
Query: 372 ANDAPYNFDELGDVD------SIREIMWNHAGIVRDKSSLLEGLKKL-EGVEADQRLKVV 424
G+ + EI W GI RD+ SL E +L E +E + VV
Sbjct: 426 EEFIEELMKREGNESLAQVRAQMGEITWAKMGIFRDEKSLKEAYDELSELLERWNNIPVV 485
Query: 425 AKA---------VLTL-------------ALEREESRGSHYRRDFP 448
KA VL L AL R ESRG H R D+P
Sbjct: 486 DKAKVFNTNLIEVLELRNMLELARVVAYSALHRRESRGGHSREDYP 531
>pir||F72691 probable fumarate reductase flavoprotein subunit APE0950 -
Aeropyrum pernix (strain K1) >gi|5104619|dbj|BAA79934.1|
(AP000060) 573aa long hypothetical fumarate reductase
flavoprotein subunit [Aeropyrum pernix]
Length = 573
Score = 205 bits (516), Expect = 9e-52
Identities = 170/533 (31%), Positives = 245/533 (45%), Gaps = 94/533 (17%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSK----DSNSYLAQAGIAFPLV--EGDSIRIH 61
+VG G+AGL AA+ + + D +G SK S+S A+ G A + EGDS +H
Sbjct: 3 VVGTGIAGLRAAVEIKRRYGDKLDVGLVSKIHLMRSHSISAEGGTAAVIYKEEGDSYALH 62
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
DTI+ ++ D++ VW + E L G+ ++ GGHS R
Sbjct: 63 AWDTIKGSDFLADQDAVWIFVKLMPEEVRLLEHWGMPWSRRPDGRLAVRAFGGHSVKRTL 122
Query: 115 TIKSETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFL----NGE--LLKF 166
+TG + + L + + + I +++G+ GVF +G+ L K
Sbjct: 123 FAGDKTGFYEMHTLYNKLLQYDGWERYDEWYATNIVVEDGEFRGVFAINPRDGDIYLFKA 182
Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLIT 226
A ++ATGG LY F G G G+PL+D EF QFHPTG I LIT
Sbjct: 183 KAGIIATGGAGRLYNFATYAHTVTGDGWGMALRAGLPLKDPEFFQFHPTGLIPSGI-LIT 241
Query: 227 EAVRGAGAKLVTGDGERFV---------NELETRDVVARAIYLKMLEGKG---------- 267
E RG G L+ GERF+ E+ RD+V+R I ++LEG+G
Sbjct: 242 EGARGEGGYLLNNRGERFMLRKECAPKMAEIAPRDIVSRCIIREILEGRGFKDDVSGLEY 301
Query: 268 VFLDAR--GIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR- 323
V LD R G E +R P V + ++ GIDP ++ +PV PVAHYTMGGI D +YR
Sbjct: 302 VLLDLRHLGEEKINERLPAVREIAIRYAGIDPVEEPLPVRPVAHYTMGGIRTDSYYRVLD 361
Query: 324 -----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE----------EP 368
+RGL+A GE A+ HGANRL SNS EC+ SG +A + E EP
Sbjct: 362 AEGRWVRGLFAAGEVAAASIHGANRLGSNSTAECLTSG-RIAGMLAAEYALKAEARGVEP 420
Query: 369 KRGANDAPYNFD----ELGDVD-----SIREIMWNHAGIVRDKSSLLEGLKKL------- 412
+R + + + E G +R+ M + ++RD+ + GL +
Sbjct: 421 ERFEKEEAWVYGLVKRESGTPSYAIKRELRDTMGKYFYVIRDEEGMRRGLLTILKLRKMF 480
Query: 413 -EGVEADQRLKV----------------VAKAVLTLALEREESRGSHYRRDFP 448
E V + + ++ A AV AL R ESRG+HYR D+P
Sbjct: 481 REDVYVEDKGRIYNTDLIAALETANMLDAALAVAKAALNRAESRGAHYRVDYP 533
>gb|AAK42509.1| Succinate dehydrogenase subunit A (sdhA) [Sulfolobus solfataricus]
Length = 566
Score = 200 bits (503), Expect = 3e-50
Identities = 169/527 (32%), Positives = 248/527 (46%), Gaps = 83/527 (15%)
Query: 2 IDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLV----EGD 56
I+ + ++GGGLAGL++A + G V++I S+S A+ GIA + D
Sbjct: 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPND 63
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
+ DT++ G Y+ D++ + +KS E L G F GG +
Sbjct: 64 NPDYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQT 123
Query: 110 HPRVFTIKSETGKHVIPILEKHARELGVNFVRG-FVEEIGIKNGKLAGVF------LNGE 162
+PR + +TG ++ L + L V+F F ++ + K+AG+ L
Sbjct: 124 YPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDDKKVAGIVAMQMKTLTPF 183
Query: 163 LLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
K AVV+ATGG LYR T N G G G L+D EFVQFHPT +
Sbjct: 184 FFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTA-LYPSD 242
Query: 223 YLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFL 270
LI+EA RG GA L GERF+ +L RD+V+RAI ++ EG+G V L
Sbjct: 243 VLISEAARGEGAILKNIKGERFMTRYAPKKLDLAPRDIVSRAIITEIKEGRGFPGGYVGL 302
Query: 271 DAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT-RIRG 326
D G E K+R K G+D + IPV P HY MGGI VDI R I G
Sbjct: 303 DLTHLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIEGRNPDIVG 362
Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------------EEPKRGA 372
L++ GEAA HGANRL SNSLL+ +V G R +++ +E ++
Sbjct: 363 LFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRAVVQFLKSNSSNPTSNYEKEAEKVV 422
Query: 373 NDA--------PYNFDELGDVDSIREIMWNHAGIVRDKSSLLEG---LKKLEGVEAD--- 418
+DA +F ++ ++ +R+ MW++ GI RD+ LL + KL G+ ++
Sbjct: 423 DDAYKLVKSESGVHFGQI--LEKLRDTMWDYVGIYRDEGGLLNAMSEINKLRGMISNMYV 480
Query: 419 -----------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ + +A + ALER+ESRG+HYR D+P
Sbjct: 481 TDKSKVYNTEFFNALELRNMLDLAFVIAKSALERKESRGAHYRTDYP 527
>emb|CAC04215.1| (AL391515) putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 576
Score = 198 bits (498), Expect = 1e-49
Identities = 174/525 (33%), Positives = 245/525 (46%), Gaps = 79/525 (15%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVE---GDSIRIHVL 63
++G G +GL AAI L E GVDV +G + K D+++ LA GI L DS + H
Sbjct: 14 VIGTGGSGLRAAIELAEAGVDVIAVGKRPKEDTHTSLAAGGINAALATMDPEDSWQQHAA 73
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHPRVFTI 116
DT++ + D V + L +G+ F G H R
Sbjct: 74 DTLKESYLLGDPRTAEIVTQGAALGIDDLERYGMAFAREGDGRISQRFFGAHKFRRTAFA 133
Query: 117 KSETGKHVIPILEKHARELGVNFVRG-FVEEIGIKNGKLAGVF----LNG--ELLKFDAV 169
TG + L + A +L + + ++ + + +G + G + NG L+ DAV
Sbjct: 134 GDYTGLEIQRTLIRRAVQLDIPVLDSVYITRLLVHDGAVFGAYGFDLTNGTRHLVHADAV 193
Query: 170 VVATGGFSGLYRFTAGVK-ENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTY---LI 225
++A GG + ++R T+ + EN G G LRD E VQFHP+G I L+
Sbjct: 194 ILAAGGHTRIWRRTSSRRDENTGDSFRLAVEAGARLRDPELVQFHPSGIIEPENAAGTLV 253
Query: 226 TEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFLDAR 273
+EA RG G L GER++N EL TRD VA A Y ++ EG+G V+LD
Sbjct: 254 SEAARGEGGILRNALGERYMNRYDPERMELSTRDRVALASYTEIKEGRGTANGGVWLDVS 313
Query: 274 GI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISV-DIFYRTRIRGLYA 329
+ + +R P VY ++L + +D ++ I V P AHY+MGG+ V + T +RGLYA
Sbjct: 314 HLPRQTIMNRLPRVYQTLLDLQMLDITREPIEVAPTAHYSMGGVWVRPEDHSTDVRGLYA 373
Query: 330 IGEAASNGFHGANRLASNSLLECVVSGLEVARTI------LREEPKRGAN--DAPYNFDE 381
IGEAAS G HGANRL NSL+E +V G R L +P+ +A DE
Sbjct: 374 IGEAAS-GLHGANRLGGNSLIELLVYGRITGRAAAAYSESLTAQPRSATAVAEARAEVDE 432
Query: 382 LGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR----------- 420
L D +IR M HAG+VRD+ L GL +L+ VE +
Sbjct: 433 LLAADGPENVRALQRAIRNTMTEHAGVVRDEDGLRAGLAELDTVEKRMQNVGVHPDIAGF 492
Query: 421 -----------LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEF 454
+ A+A L ALER E+RG H R DFP M F
Sbjct: 493 QDLAHAFDLKSAALAARATLEAALERRETRGCHNRSDFPDMDPAF 537
>pir||D69067 succinate dehydrogenase, flavoprotein subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622619|gb|AAB85977.1| (AE000910) succinate
dehydrogenase, flavoprotein subunit [Methanobacterium
thermoautotrophicum]
Length = 558
Score = 195 bits (490), Expect = 1e-48
Identities = 160/525 (30%), Positives = 250/525 (47%), Gaps = 74/525 (14%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSII--GPKSKDSNSYLAQAGI--AFPLVEG-DS 57
+ +V I+G G AG AAI + E + I+ G K + +A+ G AF V+ DS
Sbjct: 13 ECDVLIIGSGGAGCRAAIEVSEHNLTPLIVSKGLSFKSGCTGMAEGGYNAAFACVDPEDS 72
Query: 58 IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
+H DT+R G ++ND ++V ++ ++ + L ++G F E GG ++
Sbjct: 73 PDVHFEDTMRGGGFLNDPQLVRILVDEAPDRLRDLETYGALFDRQESGLLDQRPFGGQTY 132
Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKNGKLAGVF------LNGEL 163
R TG +I L++ + V + + ++ ++ G +
Sbjct: 133 RRTCYQGDRTGHEMITALKEEVIRRDIETVEEIMITSLLVEEDRVLGAMGVSIRDSSTVA 192
Query: 164 LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI---GR 220
+ + ++A GG +Y T+ + G G L DME VQFHPTG + R
Sbjct: 193 FRASSTILAAGGAGHIYPVTSNTIQKGGDGFSVAWKAGADLIDMEQVQFHPTGMVYPESR 252
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKG-----VF 269
R L+TEAVRG G L+ +GERF+ EL TRDVVARAIY +++EG+G V+
Sbjct: 253 RGVLVTEAVRGEGGILLNSEGERFMKRYDPRGELATRDVVARAIYTEIMEGRGTGNGGVY 312
Query: 270 LDARGIED--FKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGL 327
LD + D +++ + + GID + + V P AH+ MGG+ +D + RT +R L
Sbjct: 313 LDVSHLPDEVIEEKLETMLLQFQDVGIDIRSEPMEVAPTAHHFMGGVRIDEWGRTNLRNL 372
Query: 328 YAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEP---KRGANDAPYNFD 380
+A GE + G HGANRL N+L + V +G+ AR ++ P K + Y
Sbjct: 373 FAAGE-VTGGVHGANRLGGNALADTQVFGRRAGIAAARNAIKSAPASIKSTVEEEEYRIK 431
Query: 381 EL--------GDV-DSIREIMWNHAGIVRDKSSL------LEGLKKLEG----------- 414
+ ++ D + E MWN IVR + SL ++ L + G
Sbjct: 432 SMVAEGSHSPSEIRDRLHEAMWNGVAIVRSRESLESARAVIQDLTTMMGDLNVPETSGFN 491
Query: 415 ---VEA--DQRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEF 454
+EA + + V + V+ AL REESRGSHYR+DFP R E+
Sbjct: 492 TYLIEALELENMLVTSSMVVESALIREESRGSHYRKDFPETRPEW 536
>pir||D81881 probable succinate dehydrogenase (EC 1.3.99.1) flavoprotein NMA1145
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7379838|emb|CAB84407.1| (AL162755) putative
succinate dehydrogenase flavoprotein subunit [Neisseria
meningitidis Z2491]
Length = 587
Score = 193 bits (485), Expect = 4e-48
Identities = 169/536 (31%), Positives = 251/536 (46%), Gaps = 97/536 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
IVGGG AGL AA+ L + G++ +++ S++ AQ GI+ L V+ D H+ D
Sbjct: 12 IVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQEDRWDWHMYD 71
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP------ 111
T++ ++ D++ + + + EA L G+ F E GGH+
Sbjct: 72 TVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGHTAEHGKRAV 131
Query: 112 -RVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEE-IGIKNGKLAGVFL----NGELL 164
R + TG ++ L +++ R FV ++ I +NG + GV GE+
Sbjct: 132 ERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTAMEMETGEVY 191
Query: 165 KFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
F A V+ ATGG +Y + N G +G A G+PL DMEF QFHPTG G
Sbjct: 192 IFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFHPTGVAGAGV 251
Query: 223 YLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKG-------- 267
LITE VRG G L+ DGERF V +L +RDVV+RA+ +++ EG+G
Sbjct: 252 -LITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHV 310
Query: 268 -VFLDARGIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIF------ 319
+ +D G E ++ P + + ++ GIDP KD IPV P HY MGGI +
Sbjct: 311 LLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVP 370
Query: 320 ----YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR-EEPKRGAND 374
Y ++GLYA GE A HGANRL +NSLL+ VV G ++++ + +
Sbjct: 371 QGDEYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKP 430
Query: 375 APYNFDEL--------------GDVDSIREIMWN----HAGIVRDKSSLLEGLK------ 410
P N EL +VD++R + HAG+ R L +G++
Sbjct: 431 LPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIA 490
Query: 411 ------------------KLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
++E +E D ++ VAKA L A R+ESRG+H D P
Sbjct: 491 ERVKRTEIKDKSKVWNTARIEALELDNLIE-VAKATLVSAEARKESRGAHASDDHP 545
>pir||F81138 succinate dehydrogenase, flavoprotein chain NMB0950 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226189|gb|AAF41356.1| (AE002446) succinate
dehydrogenase, flavoprotein subunit [Neisseria
meningitidis MC58]
Length = 587
Score = 193 bits (485), Expect = 4e-48
Identities = 169/536 (31%), Positives = 251/536 (46%), Gaps = 97/536 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
IVGGG AGL AA+ L + G++ +++ S++ AQ GI+ L V+ D H+ D
Sbjct: 12 IVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQEDRWDWHMYD 71
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP------ 111
T++ ++ D++ + + + EA L G+ F E GGH+
Sbjct: 72 TVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGHTAEHGKRAV 131
Query: 112 -RVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEE-IGIKNGKLAGVFL----NGELL 164
R + TG ++ L +++ R FV ++ I +NG + GV GE+
Sbjct: 132 ERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTAMEMETGEVY 191
Query: 165 KFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
F A V+ ATGG +Y + N G +G A G+PL DMEF QFHPTG G
Sbjct: 192 IFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFHPTGVAGAGV 251
Query: 223 YLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKG-------- 267
LITE VRG G L+ DGERF V +L +RDVV+RA+ +++ EG+G
Sbjct: 252 -LITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHV 310
Query: 268 -VFLDARGIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIF------ 319
+ +D G E ++ P + + ++ GIDP KD IPV P HY MGGI +
Sbjct: 311 LLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVP 370
Query: 320 ----YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR-EEPKRGAND 374
Y ++GLYA GE A HGANRL +NSLL+ VV G ++++ + +
Sbjct: 371 QGEDYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKP 430
Query: 375 APYNFDEL--------------GDVDSIREIMWN----HAGIVRDKSSLLEGLK------ 410
P N EL +VD++R + HAG+ R L +G++
Sbjct: 431 LPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIA 490
Query: 411 ------------------KLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
++E +E D ++ VAKA L A R+ESRG+H D P
Sbjct: 491 ERVKRTEIKDKSKVWNTARIEALELDNLIE-VAKATLVSAEARKESRGAHASDDHP 545
>pir||T50536 succinate dehydrogenase (EC 1.3.99.1) chain A [validated] -
Acidianus ambivalens >gi|3378540|emb|CAA06780.1|
(AJ005961) succinate dehydrogenase, subunit A [Acidianus
ambivalens]
Length = 566
Score = 190 bits (479), Expect = 2e-47
Identities = 166/521 (31%), Positives = 239/521 (45%), Gaps = 83/521 (15%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEG-----DSIRIH 61
++GGGLAGL+AA + G V++I S+S A+ GIA +EG D+
Sbjct: 10 VIGGGLAGLMAAHEIAVSGYKVAVISKVFPTRSHSSSAEGGIA-AYIEGNSDPNDNPDYM 68
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
DTI+ G ++ D + + KS E + S G F GG ++PR
Sbjct: 69 TYDTIKGGDFLVDPDAAELLSQKSGEIVRIMESWGTLFNRQPDGRVAVRYFGGQTYPRTR 128
Query: 115 TIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGK-LAGVF------LNGELLKFD 167
+ + ++ L + L ++F + I++ K + GV + K
Sbjct: 129 FVGDKLEMALLHTLFQRVSGLDIDFYNEWFALDLIRDDKRVVGVVAMEMKSMTPVFFKAR 188
Query: 168 AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITE 227
A+V+ATGG LY + N G G L+D EFVQFHPT LI+E
Sbjct: 189 AIVMATGGMGMLYAHSTNAYINTGDGYAMALRAGAALKDPEFVQFHPTALYPS-DILISE 247
Query: 228 AVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFLDARGI 275
A RG GA L+ GERF+ +L RD+ +RAI ++ EG+G V LD R +
Sbjct: 248 AARGEGAILINNKGERFMARYAPRKLDLAPRDITSRAIITEIREGRGFPGGYVGLDLRHL 307
Query: 276 -EDF-KDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR-IRGLYAIG 331
ED+ K+R Y K G+D ++ IPV P HY MGGI VDI + + GL+A G
Sbjct: 308 GEDYIKERLALAYEAAKNFAGVDATQEPIPVRPAQHYYMGGIDVDITGQNPDLVGLFAAG 367
Query: 332 EAASNGFHGANRLASNSLLECVVSGLEVARTI---LREEPKRGAN----------DAPYN 378
EAA HGANRL SNSLLE +V G E R + L E + +N D Y
Sbjct: 368 EAACVSVHGANRLGSNSLLETLVFGRETGRAVAKFLSEHKEEDSNSLDKEAEKVVDDAYK 427
Query: 379 FDE------LGDV-DSIREIMWNHAGIVRDKSSLLEGLKKL------------------- 412
F + G++ + +R +MW GI RD+ + + L ++
Sbjct: 428 FVKSESGVHFGEILNKLRNVMWEKVGIFRDEDGIKDALSQIIELRKMTSSMYVLDKSTTY 487
Query: 413 -----EGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+E L +A + ALER+ESRG+HYR D+P
Sbjct: 488 NTEFFNALELRNMLD-LAIVIARTALERKESRGAHYRTDYP 527
>sp|Q60356|Y033_METJA HYPOTHETICAL FAD FLAVOPROTEIN OXIDASE MJ0033
>gi|2129293|pir||A64304 succinate dehydrogenase (EC
1.3.99.1) flavoprotein - Methanococcus jannaschii
>gi|1592258|gb|AAB98014.1| (U67462) succinate
dehydrogenase, flavoprotein subunit (sdhA)
[Methanococcus jannaschii]
Length = 539
Score = 190 bits (479), Expect = 2e-47
Identities = 156/514 (30%), Positives = 243/514 (46%), Gaps = 68/514 (13%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
++ I+GGG A AAI +K V +++ G K + +A+ G DS + H D
Sbjct: 4 DILIIGGGGAAARAAIECRDKNVIIAVKGLFGKSGCTVMAEGGYNAVFNPKDSFKKHFYD 63
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFTIK 117
T++ G +IN+ ++V ++ + + L G F E GG S R
Sbjct: 64 TVKGGGFINNPKLVEILVKNAPKELLNLERFGALFDRTEDGFIAQRPFGGQSFNRTCYCG 123
Query: 118 SETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFLN---GELLKF--D 167
TG ++ L ++ + ++ E + IK N +FL+ G +
Sbjct: 124 DRTGHEIMRGLMEYISKF--ERIKILEEVMAIKLIVKDNRCYGAIFLDLKTGNIFPIFAK 181
Query: 168 AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITE 227
A ++ATGG LY T+ + G +G L DME VQFHPTG +G L+TE
Sbjct: 182 ATILATGGAGQLYPITSNPIQKTGDGFAIAYNEGAELIDMEMVQFHPTGMVG-TGILVTE 240
Query: 228 AVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGK----GVFLDARGI- 275
AVRG G L ERF+ EL TRDVVARAIY ++ EG+ GV+LD +
Sbjct: 241 AVRGEGGILYNKYKERFMVRYDKERMELSTRDVVARAIYKEIQEGRGVNGGVYLDVSHLP 300
Query: 276 -EDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAA 334
E + + + + GID K+ + V+P AH+ MGG+ ++ T I GL+A GE
Sbjct: 301 NEVIEKKLETMLKQFLRVGIDIRKEPMIVSPTAHHFMGGLKINERCETNIIGLFACGE-V 359
Query: 335 SNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAN------DAPYNFDEL----GD 384
+ G HGANRL N+L + V G ++ N D +E+ GD
Sbjct: 360 TGGVHGANRLGGNALADTQVFGAIAGKSAKEFVENHDFNNIDAEEDVAKILEEINSLKGD 419
Query: 385 ------VDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD------------------QR 420
++ +R++MW++ I+R++ L + L+K++ +E + +
Sbjct: 420 LNVYNLIEDLRKVMWDYVSIIRNEDGLKKALEKIDEIERNIDNVKVNGIIDLQNYFELKN 479
Query: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEF 454
+ VVAK V AL R+ESRG+HYR DFP ++E+
Sbjct: 480 MVVVAKLVTKSALYRKESRGAHYREDFPETKEEW 513
>sp|Q49617|NADB_MYCLE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|2145871|pir||S72695 L-aspartate oxidase (EC
1.4.3.16) nadB - Mycobacterium leprae
>gi|466783|gb|AAA17059.1| (U00010) L-aspartate oxidase
(quinolinate synthetase, B protein); nadB;
Lepb1170_C1_167 [Mycobacterium leprae]
Length = 424
Score = 190 bits (478), Expect = 3e-47
Identities = 137/387 (35%), Positives = 204/387 (52%), Gaps = 31/387 (8%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK---DSNSYLAQAGIAFPLV-EGDSIRI 60
+V ++G G+AGL AA++ G +V ++ + ++ ++ AQ GIA L DS+
Sbjct: 11 DVVVIGTGVAGLAAALAAHRAGRNVVVLTKADQRRGETATHYAQGGIAVVLPGSDDSVDA 70
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRV 113
H DT+ AG + + + V++++++ A + LV +G F + EGGHS R+
Sbjct: 71 HASDTLAAGAGMCNLDTVYSIVAEGYHAVTELVGYGARFDESIPGRWAVTCEGGHSRRRI 130
Query: 114 FTIKSE-TGKHVIPILEKHARELGV---NFVRGFVEEIGIKNGKLAGVFLNG-ELLKFDA 168
+ TG V L+ A L + + + + + NG ++ + NG ++ +
Sbjct: 131 VHAGGDATGAEVQRALDHAADVLDIRTSHLALRVLHDGTVVNG-VSVLNPNGWGIVSAPS 189
Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI------GRRT 222
V++A+GG LY T + + G I GV + D+EF+QFHPT G R
Sbjct: 190 VILASGGLGHLYGATTNPEGSTGDGIALALWAGVAVSDLEFIQFHPTMLFAAGTGTGGRR 249
Query: 223 YLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAI--YLKMLEGKGVFLDARG 274
L+TEA+RG GA L+ G + +L RDVVA AI LK V+LDARG
Sbjct: 250 PLVTEAIRGEGAILLDSKGNSVTSGVHPLGDLAPRDVVAAAIDARLKATGDSCVYLDARG 309
Query: 275 IEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAA 334
I+ F RFP V + + GIDP ++ IPV P AHY+ GGI D + +T + GL+A GE A
Sbjct: 310 IDGFASRFPTVTAACRTVGIDPAREPIPVVPGAHYSCGGIVTDAYGQTELAGLFAAGEVA 369
Query: 335 SNGFHGANRLASNSLLECVVSGLEVAR 361
G HGANRLASNSLLE +V G R
Sbjct: 370 RTGMHGANRLASNSLLEGLVVGGRAGR 396
>pir||T45162 succinate dehydrogenase (EC 1.3.99.1) chain A [imported] -
Sulfolobus acidocaldarius >gi|1654087|emb|CAA70249.1|
(Y09041) succinate dehydrogenase subunit A [Sulfolobus
acidocaldarius]
Length = 566
Score = 190 bits (478), Expect = 3e-47
Identities = 172/524 (32%), Positives = 244/524 (45%), Gaps = 89/524 (16%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEG-----DSIRIH 61
I+G GLAGL+AA + + G ++I S+S A+ GIA V G DS
Sbjct: 10 IIGAGLAGLMAAHEISKAGYSAAVISKVFPTRSHSAAAEGGIA-AYVNGNSDPNDSPDYM 68
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
DTI+ G Y+ D++ + KS E L G F GG ++PR
Sbjct: 69 AYDTIKGGDYLVDQDAAELLAYKSGEIVELLEKWGALFNRQPDGRIALRYFGGQTYPRTR 128
Query: 115 TIKSETGKHVIPILEKHARELG-VNFV-RGFVEEIGIKNGKLAGVF------LNGELLKF 166
+ +TG ++ L + G V+F F E+ ++ GV + K
Sbjct: 129 FVGDKTGMALLHTLYERTSGSGKVDFYFEWFAWELIRDESRVRGVVAFDMRNMVPFFFKA 188
Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALKG-VPLRDMEFVQFHPTGFIGRRT 222
AVV+A GG LYR T N + GD +AL+ V L+D EFVQFHPT
Sbjct: 189 KAVVIAAGGMGMLYRHTT----NSYIGTGDGYAMALRARVALKDPEFVQFHPTALYPS-D 243
Query: 223 YLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFL 270
LI+EA RG GA L GERF+ +L RD+V+RAI ++ EG+G V L
Sbjct: 244 ILISEAARGEGAVLKNAKGERFMTRYAPKKLDLAPRDIVSRAIITEIKEGRGFPGGYVGL 303
Query: 271 DAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR-IRG 326
D G E K+R Y K G+D K+LIP+ P HY MGGI VDI + + G
Sbjct: 304 DISHLGEEYIKERLALAYEAAKTFSGVDATKELIPIRPAHHYYMGGIDVDITGKNPDVIG 363
Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR------------EEPKRGAND 374
L+A GEAA HGANRL SNSLLE +V G E +++ ++ A
Sbjct: 364 LFAAGEAACVSVHGANRLGSNSLLETLVFGRETGNEVVKFLQSFTEPSSDIDKEAEKAEQ 423
Query: 375 APYNFDE------LGDV-DSIREIMWNHAGIVRDKSSLLEGLKK-LEGVEADQRLKVVAK 426
+ Y+ + GD+ + +R+ MW GI RD++ L + + L+ E + + V+ K
Sbjct: 424 SAYDIMKKESGVHFGDILEKLRDYMWEFVGIYRDENGLKNAVSEILKLREQMKNMYVLDK 483
Query: 427 A----------------------VLTLALEREESRGSHYRRDFP 448
+ + + AL R+ESRG+HYR D+P
Sbjct: 484 SKVYNTEFYNALELKNMIDLGLVIASTALNRKESRGAHYRTDYP 527
>sp|P44894|FRDA_HAEIN FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|1074113|pir||H64097
fumarate reductase (EC 1.3.99.1) flavoprotein -
Haemophilus influenzae (strain Rd KW20)
>gi|1573849|gb|AAC22493.1| (U32765) fumarate reductase,
flavoprotein subunit (frdA) [Haemophilus influenzae Rd]
Length = 599
Score = 189 bits (475), Expect = 6e-47
Identities = 165/542 (30%), Positives = 258/542 (47%), Gaps = 102/542 (18%)
Query: 2 IDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS---KDSNSYLAQAGIAFPLVEGDSI 58
+++++ IVG G GL AAI+ E ++ I +++ A+ G A + E DS
Sbjct: 4 VNVDIAIVGAGGGGLRAAIAAAEANPNLKIALVSKVYPMRTHTVAAEGGAAAVIKEEDSY 63
Query: 59 RIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHP 111
H DT+ G ++ +++VV + S + L G ++ GG
Sbjct: 64 DKHFQDTVAGGDWLCEQDVVEYFVQHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIE 123
Query: 112 RVFTIKSETGKHVIPILEKHA------RELGVNFVRGFVEEIGIKNGKLAGVFLNGELLK 165
R + +TG H++ L + + + +FV + + G G +A + G L++
Sbjct: 124 RTWFAADKTGFHLLHTLFQTSIQYPQIQRFDEHFVLDILVDDGHARGMVAMNMMEGSLVQ 183
Query: 166 FDA--VVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIG 219
+A VV+ATGG ++F N G++ GD +A + GVPLRDMEFVQ+HPTG +
Sbjct: 184 INANAVVIATGGGCRAFKFNT----NGGIVTGDGLSMAYRHGVPLRDMEFVQYHPTG-LP 238
Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLK 261
L+TE RG G LV DG R++ EL RD V++A + +
Sbjct: 239 NTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIGKPQNKYMELGPRDKVSQAFWQE 298
Query: 262 MLEG------KGV---FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHY 309
+G KGV LD R G + +R P++ + EG++P + IPV PV HY
Sbjct: 299 WKKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELASAYEGVNPVNEPIPVRPVVHY 358
Query: 310 TMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-----LEVARTIL 364
TMGGI VD TRI+GL+A+GE AS+G HGANRL SNSL E VV G R +
Sbjct: 359 TMGGIEVDFNSETRIKGLFAVGECASSGLHGANRLGSNSLAELVVLGRVAGEYAAQRAVE 418
Query: 365 REEPKRGANDAPYNFDELGDVDSIRE----------------IMWNHAGIVRDKSSLLEG 408
+ + A DA D + ++++ + +M GI RD++S+ +
Sbjct: 419 AQSVNQSAVDAQAK-DVVARLEALHKQEGNESWSEIRDEMGTVMEEGCGIYRDQASMQKA 477
Query: 409 LKKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRR 445
+ K+ E E +R++V VA+++ A+ER+ESRG+H R
Sbjct: 478 VDKIAELKERYKRIRVSDNSSVFNTDVLYTVELGYILDVAQSIANSAIERKESRGAHQRL 537
Query: 446 DF 447
D+
Sbjct: 538 DY 539
>emb|CAA04398.1| (AJ000941) Thiol:fumarate reductase subunit A [Methanobacterium
thermoautotrophicum]
Length = 545
Score = 188 bits (473), Expect = 1e-46
Identities = 161/529 (30%), Positives = 244/529 (45%), Gaps = 80/529 (15%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSII--GPKSKDSNSYLAQAGI--AFPLVEG-DS 57
+ +V I+G G AG AAI + E + I+ G K + +A+ G AF V+ DS
Sbjct: 7 ECDVLIIGSGGAGCRAAIEVSEHKLTPIIVSKGLSFKSGCTGMAEGGYNAAFACVDPEDS 66
Query: 58 IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
+H DT+R G +IND +V ++ ++ + L +G F E GG ++
Sbjct: 67 PDVHFEDTMRGGGFINDPRLVRILVDEAPDRLRDLEEYGALFDRQESGLLDQRPFGGQTY 126
Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFV-RGFVEEIGIKNGKLAGVF----LNGELLK 165
TG +I L++ + + + + +++G + G +N E +
Sbjct: 127 RETCYHGDRTGHEMITALKEEVIRRDIETIDEVMITSLLVEDGSVLGAMGVSIMNSEPVA 186
Query: 166 FDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI---GR 220
F A ++A+GG +Y T+ + G G L DME VQFHPTG + R
Sbjct: 187 FRASSTILASGGAGHIYPVTSNTMQKGGDGFAIAWKAGADLIDMEQVQFHPTGMVYPESR 246
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKG-----VF 269
R L+TEAV+G G L+ +GERF+ EL TRDVVARAIY +++EG+G V+
Sbjct: 247 RGVLVTEAVKGEGGILLNSEGERFMGRYDPRGELATRDVVARAIYTEIMEGRGTENGGVY 306
Query: 270 LDARGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVT---PVAHYTMGGISVDIFYRTRIRG 326
LD + R+ + + +D G D+ P AH+ MGG+ +D + T ++
Sbjct: 307 LD---VSHLLMRYRGELETMLLQFLDVGVDIRSEQWRLPTAHHFMGGVRIDEWGTTNLKN 363
Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVA---------------RTILREEPKRG 371
LYA GE S G HGANRL N+L + V G R+++ EE +R
Sbjct: 364 LYAAGEV-SGGVHGANRLGGNALADTQVFGRRAGISAAKNAMSSSRRHVRSLIEEEEQRI 422
Query: 372 ANDAPYNFDELGDV-DSIREIMWNHAGIVRDKSSLLEGLKK------------------- 411
+ ++ D + E MW+ IVR + SL + +
Sbjct: 423 KDMVRDGSIRPAEIRDELHEAMWSDVAIVRSRRSLESAMSRISTLMDKLGDLDVPETGGF 482
Query: 412 ----LEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
LE +E + L + A V AL REESRGSHYR DFP R E++R
Sbjct: 483 NSNLLEALELENML-ITASLVTRSALIREESRGSHYREDFPETRPEWKR 530
>pir||H81203 l-aspartate oxidase NMB0392 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7225614|gb|AAF40832.1|
(AE002395) l-aspartate oxidase [Neisseria meningitidis
MC58]
Length = 502
Score = 188 bits (472), Expect = 1e-46
Identities = 163/498 (32%), Positives = 233/498 (46%), Gaps = 54/498 (10%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
D +V I G GLA L A+SL E V + + D+ S AQ GIA D I HV
Sbjct: 4 DCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRHAQGGIAAAWSGEDDIEKHV 63
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE------LEGGHSHPRVFTI 116
DT+ AG + DE V ++S+ A +L++ GV F N EGGH+ R+ +
Sbjct: 64 ADTLEAGAGLCDEAAVRAILSQGKPAIEWLLAQGVAFDRNHNGLHLTREGGHTCRRIAHV 123
Query: 117 KSETGKHVIPILEKHARELGVNFV--RGFVEEIGIKNGKLAGVFL----NGELLKFDA-- 168
TG+ V+ L R V R +I ++G G+ + E + A
Sbjct: 124 ADYTGEAVMQSLIAQIRRRPNIRVCERQMALDIQTESGAACGLTVLDCRTQETYRIRARH 183
Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI----GRRTYL 224
V+A GG +Y T E G I G + ++EF+QFHPTG RT+L
Sbjct: 184 TVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCAVGNLEFIQFHPTGLARPSENGRTFL 243
Query: 225 ITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDA----RG 274
I+EAVRG G L GERF+ EL RD+VARAI ++ + F+ +
Sbjct: 244 ISEAVRGEGGILTNQAGERFMPHYDRRAELAPRDIVARAIAAEIAKQTQDFVSLDISHQP 303
Query: 275 IEDFKDRFPYVYS-VLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEA 333
+ FP ++ L + G+D + IPV PV HYT GGI D RT + LYA+GE
Sbjct: 304 AAFVRRHFPSIHRHCLSQCGLDITRQAIPVRPVQHYTCGGIQTDPCGRTSLPQLYALGET 363
Query: 334 ASNGFHGANRLASNSLLECVVSGLEVARTI-----LREEPKRGAN-----DAPYNFDELG 383
A G HGANRLASNSLLECVV+ A+ I + EP + + +A D+L
Sbjct: 364 ACTGLHGANRLASNSLLECVVTARLCAQAIADGQAFQAEPFQRPSESLSAEAGIFSDDLQ 423
Query: 384 DVDS---IREIMWNHAGIVRDKSSLLEGLKKLEGVEADQ------------RLKVVAKAV 428
+ S ++ H GI+R+ + L + +L+ + +Q L + AV
Sbjct: 424 NTFSRPVLQTFNQRHLGILRNDTGLRRAIAQLQLWKQNQAEPHTASEYENRNLLECSLAV 483
Query: 429 LTLALEREESRGSHYRRD 446
A R ++ G+H+ D
Sbjct: 484 AQAAYRRRQNIGAHFNSD 501
>emb|CAC12130.1| (AL445066) probable fumarate reductase (frdA) [Thermoplasma
acidophilum]
Length = 567
Score = 187 bits (470), Expect = 2e-46
Identities = 166/527 (31%), Positives = 247/527 (46%), Gaps = 82/527 (15%)
Query: 2 IDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK----DSNSYLAQAGIAFPLVEGDS 57
I +V I+GGG+AGL AA++ E ++S+ G SK S+S A+ G + L DS
Sbjct: 4 IKEDVIILGGGMAGLRAAVAAAEYNKNISV-GVVSKLYPLRSHSVSAEGGTSAVLNPKDS 62
Query: 58 IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
+H DTI+ Y+ D++ V + E G ++ N G S
Sbjct: 63 FDLHAYDTIKGSDYLADQDAVEEFVRLVPEQIYTTDHWGCPWSRNPDGTISQRDFGALSF 122
Query: 111 PRVFTIKSETGKHVIPILEKHAREL-GVNFVRG-FVEEIGIKNGKLAGV----FLNGELL 164
PR +TG HV+ L A + ++F F + + G+ + GE +
Sbjct: 123 PRATFAADKTGFHVMQTLFSRALKYDNIHFYNEYFATSMFLDGGRFNSLTTINLRTGEFV 182
Query: 165 KFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
F +++ A GG LY+F+ G G+PL+DMEF+QFHPTG +
Sbjct: 183 VFQGKSIIFAAGGAGRLYQFSTYAHSVSGDGDAIAYRAGIPLKDMEFIQFHPTGLVPSGI 242
Query: 223 YLITEAVRGAGAKLVTGDGERFV-----NELE--TRDVVARAIYLKMLEGKG-------- 267
LITE R G L+ G+ +RF+ N+LE +RDVV+RAI ++ G+G
Sbjct: 243 -LITEGARADGGYLLNGEKKRFMQAYAPNKLEKASRDVVSRAIMWEIEAGRGAKGEYGDM 301
Query: 268 --VFLDARGIEDFKD-RFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
V+LD R + D D R P + + KK GID +LIPV P HYTMGGI ++ T
Sbjct: 302 EYVYLDLRHMADILDERLPMITEIAKKFNGIDAHTELIPVHPATHYTMGGIDSNVKTTTD 361
Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECV----VSGLEVARTILREE-----PKRGAND 374
G++A GE A HGANRL SNS EC+ V+G+ A+ + + + N+
Sbjct: 362 FSGIFAAGENACVSIHGANRLGSNSTNECLALGNVAGVSAAKYAMEHDIPDLVVENVNNE 421
Query: 375 APYNFDEL------GDVDSIRE----IMWNHAGIVRDKSSLLEGLKKLE----------- 413
+D+L +V IRE M + GI RD L LK ++
Sbjct: 422 EKRIWDDLLKRDGGENVAKIREDLRINMDKNVGIFRDADGLNTSLKNIKQYKERYQKISI 481
Query: 414 -------GVEADQRLKV-----VAKAVLTLALEREESRGSHYRRDFP 448
+E + L+V +A+ + A+ R ESRG+HYR+D+P
Sbjct: 482 QDKSSTFNMELEWALEVGFMLDLAEIITVGAIMRTESRGAHYRKDYP 528
>gb|AAG22257.1| (AE003796) Scs-fp gene product [Drosophila melanogaster]
Length = 661
Score = 187 bits (470), Expect = 2e-46
Identities = 163/545 (29%), Positives = 265/545 (47%), Gaps = 101/545 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA LV +G ++I S++ AQ GI L +E D + H+ D
Sbjct: 63 VVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYD 122
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
T++ ++ D++ + + ++ +A L ++G+ F+ G L+ GG
Sbjct: 123 TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQ 182
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
+H R + TG ++ L + N FV F ++ ++G+ GV +G L
Sbjct: 183 AH-RCCAVADRTGHSLLHTLYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTL 241
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F A V+ATGG+ + G +A +G+P +D+EFVQFHPTG G
Sbjct: 242 HRFRAKNTVIATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAG 301
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------- 267
LITE RG G L+ G+GERF+ +L +RDVV+R++ ++++EG+G
Sbjct: 302 C-LITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDH 360
Query: 268 VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRI 324
V+L + + +R P + + + G+D ++ IPV P HY MGG+ + YR ++
Sbjct: 361 VYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTN--YRGQV 418
Query: 325 ------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR-EEP--- 368
GLYA GEAAS+ HGANRL +NSLL+ VV G A+TI +P
Sbjct: 419 ITIDKDGKDVIVPGLYAAGEAASSSVHGANRLGANSLLDLVVFGRACAKTIAELNKPGAP 478
Query: 369 ----KRGANDAPY-NFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLE 413
K A +A N D+L + +++ M +HA + RD L +G+ K++
Sbjct: 479 APTLKENAGEASVANLDKLRHANGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMK 538
Query: 414 GV-EADQRLKVVAKAVL-------TLALE---------------REESRGSHYRRDFPFM 450
+ + + +KVV ++++ TL L+ R+ESRG+H R DF
Sbjct: 539 EIYKQFKDIKVVDRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVR 598
Query: 451 RKEFE 455
E++
Sbjct: 599 EDEYD 603
>pir||E81780 L-aspartate oxidase (EC 1.4.3.16) NMA2092 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380717|emb|CAB85308.1| (AL162758) L-aspartate
oxidase [Neisseria meningitidis Z2491]
Length = 502
Score = 186 bits (468), Expect = 4e-46
Identities = 158/498 (31%), Positives = 234/498 (46%), Gaps = 54/498 (10%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
D +V I G GLA L A+SL E V + + D+ S AQ GIA D I HV
Sbjct: 4 DCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRHAQGGIAAAWSGEDDIEKHV 63
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE------LEGGHSHPRVFTI 116
DT+ AG + +E V ++S+ A +L++ GV F + EGGH+ R+ +
Sbjct: 64 ADTLEAGAGLCNEAAVRTILSQGKPAIEWLLAQGVAFDRSHDGLHLTREGGHTCRRIAHV 123
Query: 117 KSETGKHVIP--ILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGEL------LKFDA 168
TG+ V+ I++ R + R +I ++G G+ + ++
Sbjct: 124 ADYTGEAVMQSLIVQIRRRPNIRVYERQMALDIQTESGAACGLTVLDRRTQETYNIRASH 183
Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI----GRRTYL 224
V+A GG +Y T E G I G + ++EF+QFHPTG RT+L
Sbjct: 184 TVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCAVENLEFIQFHPTGLARSSENGRTFL 243
Query: 225 ITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDA----RG 274
I+EAVRG G L GERF+ EL RD+VARAI ++ + F+ +
Sbjct: 244 ISEAVRGEGGILTNQAGERFMPHYDRRAELAPRDIVARAIAAEIAKQTQDFVSLDISHQP 303
Query: 275 IEDFKDRFPYVYS-VLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEA 333
+ FP ++ L + G+D + IPV PV HYT GGI D RT + LYA+GE
Sbjct: 304 AAFVRRHFPSIHRHCLSQCGLDITRQAIPVRPVQHYTCGGIQTDPCGRTSLPQLYALGET 363
Query: 334 ASNGFHGANRLASNSLLECVVSGLEVARTI-----LREEPKRGAN-----DAPYNFDELG 383
A G HGANRLASNSLLECVV+ A+ I + EP + + +A D+L
Sbjct: 364 ACTGLHGANRLASNSLLECVVTARLCAQAIADGQAFQAEPFQRPSESLSAEAGIFSDDLQ 423
Query: 384 DVDS---IREIMWNHAGIVRDKSSLLEGLKKLEGVEADQ------------RLKVVAKAV 428
+ S ++ H GI+R+ + L + +L+ + +Q L + AV
Sbjct: 424 NTFSRPVLQTFNQRHLGILRNDTGLRRAIAQLQLWKQNQAEPHTASEYENRNLLECSLAV 483
Query: 429 LTLALEREESRGSHYRRD 446
A R ++ G+H+ D
Sbjct: 484 AQAAYRRRQNIGAHFNSD 501
>pir||T51421 L-aspartate oxidase-like protein - Arabidopsis thaliana
>gi|9755744|emb|CAC01875.1| (AL391149) L-aspartate
oxidase-like protein [Arabidopsis thaliana]
Length = 642
Score = 184 bits (462), Expect = 2e-45
Identities = 161/530 (30%), Positives = 235/530 (43%), Gaps = 83/530 (15%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLDTIR 67
++G G+AGL A+ + ++G I + +SN+ AQ G++ L DS+ H+ DT+
Sbjct: 89 VIGSGVAGLRYALEVAKQGTVAVITKDEPHESNTNYAQGGVSAVLCPLDSVESHMRDTMV 148
Query: 68 AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFTIKSET 120
AG ++ DEE V V ++ E L++ G +F E EGGHSH R+ T
Sbjct: 149 AGAHLCDEETV--VCTEGPERIRELIAMGASFDHGEDGNLHLAREGGHSHCRIVHAADMT 206
Query: 121 GKHVI-PILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFLNGELLKF---DAVVVATGG 175
G+ + +LE + ++ F F ++ L V + L + ++A+GG
Sbjct: 207 GREIERALLEAVLNDPNISVFKHHFAIDLLTSQDGLNTVCHGVDTLNIKTNEVTLLASGG 266
Query: 176 FSGLYRFTAG--VKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR-----------RT 222
+Y T V G+ + A + +MEFVQFHPT
Sbjct: 267 AGHIYPSTTNPLVATGDGMAMAHRAQ--AVISNMEFVQFHPTALADEGLPIKLQTARENA 324
Query: 223 YLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAI--YLKMLEGKGVFLDA-- 272
+LITEAVRG G L ERF+ EL RDVVAR+I LK K V LD
Sbjct: 325 FLITEAVRGDGGILYNLGMERFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH 384
Query: 273 RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGE 332
+ E FP + S K G+D + IPV P AHY GG+ + T + GL+ GE
Sbjct: 385 KPREKILAHFPNIASECLKHGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVLGLFVAGE 444
Query: 333 AASNGFHGANRLASNSLLECVV---SGLEVARTILRE------EPKRGANDAPYNFDELG 383
A G HGANRLASNSLLE +V ++ + +++ ++ LG
Sbjct: 445 VACTGLHGANRLASNSLLEALVFARRAVQPSTELMKRTRLDVCASEKWTRPVVATARLLG 504
Query: 384 DV-------------DSIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD------------ 418
D ++E+MW + GIVR L +K+ +EA
Sbjct: 505 DEVIAKIIALTKEVRRELQEVMWKYVGIVRSTIRLTTAERKIAELEAKWETFLFEHGWEQ 564
Query: 419 ----------QRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPS 458
+ L AK V++ AL R ESRG HY DFPF+ + P+
Sbjct: 565 TVVALEACEMRNLFCCAKLVVSSALARHESRGLHYMTDFPFVEESKRIPT 614
>gb|AAB34901.1| (S78630) succinate-ubiquinone oxidoreductase; fumarate reductase
[Dirofilaria immitis] >gi|1582622|prf||2119194A fumarate
reductase:SUBUNIT=flavoprotein [Dirofilaria immitis]
Length = 646
Score = 183 bits (460), Expect = 3e-45
Identities = 159/543 (29%), Positives = 245/543 (44%), Gaps = 96/543 (17%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA+ L E G +V++I S++ AQ G+ L + D R H D
Sbjct: 46 VVGAGGAGLRAAMGLSENGQNVAVITKLFPTRSHTVAAQGGVNAALGNMNPDDWRWHFYD 105
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP------ 111
T++ ++ D+ + + ++ A + ++G+ F+ E GG S+
Sbjct: 106 TVKGSDWLGDQNAIHYMTREAVRAVIEMENYGMPFSRTEEGKIYQRSFGGQSNNFGKGGM 165
Query: 112 --RVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGELL 164
R + TG ++ L + + F+ F ++ + G+ G+ +G +
Sbjct: 166 ARRTCCVADRTGHSMLHTLYGSSLQYNCRYFIEYFALDLLMDKGRCIGIIAMDLEDGSIH 225
Query: 165 KFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
+F A V+ATGG+ + G + G+ DMEFVQFHPTG G
Sbjct: 226 RFRAKNTVIATGGYGRAFFSCTSAHTCTGDGTAMITRAGLQNSDMEFVQFHPTGIYGAGC 285
Query: 223 YLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARGI 275
LITE RG G LV +GERF+ +L +RDVV+RA+ ++++EG+GV D I
Sbjct: 286 -LITEGSRGEGGFLVNSEGERFMKKYAPNALDLASRDVVSRAMTIEIMEGRGVGKDKDHI 344
Query: 276 ---------EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR-- 323
+D + P + + + G+D K+ IPV P HY MGGI + +
Sbjct: 345 YLQLHHLPAKDLHAKLPGIMETAMIFAGVDAAKEPIPVLPTVHYNMGGIPTNYMGQVLTH 404
Query: 324 --------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR---------- 365
+ GLYA GEAA++ HGANRL +NSLL+ VV G A IL
Sbjct: 405 KRDKGDQLVPGLYACGEAAAHSVHGANRLGANSLLDLVVFGRACAIDILEKAKKSPEKIP 464
Query: 366 EEPKRGANDAPYNFDEL----GDVDS------IREIMWNHAGIVRDKSSLLEGLKKLEGV 415
E P+ N D+L GD+ + +++ M HA + R L EG+ K+E +
Sbjct: 465 ELPENAGESTIANVDKLRFAKGDIPTAALRLKMQKTMQQHAAVFRRGDILKEGITKMEAL 524
Query: 416 EADQR-----------------------LKVVAKAVLTLALEREESRGSHYRRDFPFMRK 452
+Q+ L + A +T A R+ESRG+H R DFP
Sbjct: 525 FKEQKLLKTTDRGLIWNSDLAETLELQNLMLNATQTITAAEARKESRGAHARDDFPTRID 584
Query: 453 EFE 455
EF+
Sbjct: 585 EFD 587
>pir||T15398 hypothetical protein C03G5.1 - Caenorhabditis elegans
>gi|1118081|gb|AAB37034.1| (U41555) Similar to succinate
dehydrogenase flavoprotein subunit; coded for by C.
elegans cDNA yk67c12.5; coded for by C. elegans cDNA
yk127c12.5; coded for by C. elegans cDNA yk56g1.5; coded
for by C. elegans cDNA yk15f12.5; coded for by C.
elegans cD>
Length = 646
Score = 183 bits (460), Expect = 3e-45
Identities = 162/536 (30%), Positives = 245/536 (45%), Gaps = 97/536 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA+ L E G+ ++I S++ AQ GI L + D+ R H D
Sbjct: 47 VVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYD 106
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNEL-EGGH 108
T++ ++ D++ + + ++ A L ++G+ F+ N+ GG
Sbjct: 107 TVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 166
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
+H R + TG ++ L + + N FV F ++ ++NG GV +G +
Sbjct: 167 AH-RTCCVADRTGHSLLHTLYGASLQYNCNYFVEYFALDLIMENGVCVGVIAMDLEDGTI 225
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F + V+ATGG+ + G A G+ DMEFVQFHPTG G
Sbjct: 226 HRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGINNSDMEFVQFHPTGIYGAG 285
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARG 274
LITE RG G LV GERF+ +L +RDVV+R++ ++++EG+GV D
Sbjct: 286 C-LITEGSRGEGGYLVNSAGERFMERYAPNAKDLASRDVVSRSMTVEIMEGRGVGPDKDH 344
Query: 275 I---------EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVD-----IF 319
I E + R P + + + G+D K+ IPV P HY MGG+ + +
Sbjct: 345 IYLQLHHLPAEQLQQRLPGISETAMIFAGVDVTKEPIPVIPTVHYNMGGVPTNYKGQVLN 404
Query: 320 YRTR-----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------- 365
Y + + GLYA GE ++ HGANRL +NSLL+ V+ G A IL+
Sbjct: 405 YTPKKGDEVVPGLYAAGECGAHSVHGANRLGANSLLDLVIFGRACAIDILKNTSAGVGVP 464
Query: 366 EEPKRGANDAPYNFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEGV 415
E PK + N D+L GD+ ++++ M NHA + R L EG+K L +
Sbjct: 465 ELPKNAGEASVANIDKLRHNKGDISTAELRLTMQKSMQNHAAVFRRGDILKEGVKVLSKL 524
Query: 416 EAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
D Q L + A + A REESRG+H R DFP
Sbjct: 525 YKDQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARDDFP 580
>sp|Q09508|DHSA_CAEEL SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
COMPLEX II) >gi|7511659|pir||T41753 succinate
dehydrogenase (ubiquinone) (EC 1.3.5.1), mitochondrial -
Caenorhabditis elegans >gi|2282574|dbj|BAA21637.1|
(D30651) flavoprotein subunit of complex II
[Caenorhabditis elegans]
Length = 646
Score = 182 bits (458), Expect = 6e-45
Identities = 161/536 (30%), Positives = 245/536 (45%), Gaps = 97/536 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA+ L E+G+ ++I S++ AQ GI L + D+ R H D
Sbjct: 47 VVGAGGAGLRAAMGLAEEGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYD 106
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNEL-EGGH 108
T++ ++ D++ + + ++ A L ++G+ F+ N+ GG
Sbjct: 107 TVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 166
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
+H R + TG ++ L + + N FV F ++ ++NG GV +G +
Sbjct: 167 AH-RTCCVADRTGHSLLHTLYGASLQYNCNYFVEYFALDLIMENGVCVGVIAMDLEDGTI 225
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F + V+ATGG+ + G A G+ DMEFVQFHPTG G
Sbjct: 226 HRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGISNSDMEFVQFHPTGIYGAG 285
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARG 274
LITE RG G LV GERF+ +L +RDVV+R++ ++++EG+GV D
Sbjct: 286 C-LITEGSRGEGGYLVNSSGERFMERYAPNSKDLASRDVVSRSMTVEIMEGRGVGPDKDH 344
Query: 275 I---------EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVD-----IF 319
I E + R P + + + G+D K+ IPV P HY MGG+ + +
Sbjct: 345 IYLQLHHLPAEQLQQRLPGISETAMIFAGVDVTKEPIPVIPTVHYNMGGVPTNYKGQVLN 404
Query: 320 YRTR-----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------- 365
Y + + GLYA GE ++ HGANRL +NSLL+ V+ G A IL+
Sbjct: 405 YTPKKGDEVVPGLYAAGECGAHSVHGANRLGANSLLDLVIFGRACAIDILKNTSAGVGGP 464
Query: 366 EEPKRGANDAPYNFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEGV 415
E PK + N D+L D+ ++++ M NHA + R L EG+K L +
Sbjct: 465 ELPKNAGEASVANIDKLRTTREDISTAELRLTMQKSMQNHAAVFRRGDILKEGVKVLSKL 524
Query: 416 EAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
D Q L + A + A REESRG+H R DFP
Sbjct: 525 YKDQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARDDFP 580
>gb|AAG19651.1| (AE005053) succinate dehydrogenase subunit A; SdhA [Halobacterium
sp. NRC-1]
Length = 615
Score = 180 bits (453), Expect = 2e-44
Identities = 135/400 (33%), Positives = 198/400 (48%), Gaps = 40/400 (10%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEGDSIR 59
M + +V +VGGG AGL AAI+ E+G DV+I+ S++ A+ GI L +GDS
Sbjct: 1 MYEHDVIVVGGGGAGLRAAIAAQEEGADVAIVTKLHPVRSHTGAAEGGINAALRDGDSWE 60
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHPR 112
H DT++ Y+ D + + + L G+ F+ + GG S PR
Sbjct: 61 DHAYDTMKGSDYLGDAPAIDTFAKTAPDEVIQLEHWGMPFSREDDGRVSQRPFGGLSFPR 120
Query: 113 VFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKN----------GKLAGVFLNG 161
+ETG H++ L + + G+ + +V E+ + + G +A +G
Sbjct: 121 TTYAGAETGHHMLHTLYEQVVKRGIEVYDEWYVSELAVTDEDNPNDRECHGVVAWDVQSG 180
Query: 162 ELLKF---DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI 218
E+ F D+V++ATGG + T N G + GVP+ DME +QFHPT +
Sbjct: 181 EIAGFKASDSVILATGGIGQAFDHTTNAVANTGDGVAMAYRAGVPVEDMEMIQFHPTT-L 239
Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFV---------NELETRDVVARAIYLKMLEGKGV- 268
LI+E VRG G L G+GERF+ EL +RDVV+RA ++ EG+GV
Sbjct: 240 PSTGVLISEGVRGEGGILYNGEGERFMFEHGYATNDGELASRDVVSRAELTEINEGRGVD 299
Query: 269 ----FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYR 321
+LD R G E DR + + + EG++ ++ +PV P HY MGGI + F
Sbjct: 300 DEHIYLDMRHLGEERITDRLENILHLAEDFEGVNGLEEPMPVKPGQHYAMGGIETNEFGE 359
Query: 322 TRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVAR 361
T + GLYA GE A HGANRL N+L E +V G R
Sbjct: 360 TCVSGLYAAGECACVSLHGANRLGGNALPELIVFGALAGR 399
>dbj|BAA84681.1| (AB031741) succinate dehydrogenase [Trypanosoma cruzi]
Length = 609
Score = 180 bits (452), Expect = 3e-44
Identities = 162/535 (30%), Positives = 236/535 (43%), Gaps = 95/535 (17%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGI--AFPLVEGDSIRIHVLD 64
+VG G +GL AA+ + G DV+ I S++ AQ GI A E D R HV D
Sbjct: 28 VVGAGGSGLRAAMGVAASGYDVACISKLYPSRSHTIAAQGGINAALDNCEEDDWRWHVYD 87
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE-GGHSH 110
T++ ++ D++ + + ++ S L S G+ F G + GG
Sbjct: 88 TVKGSDWLGDQDAIQYMCQEAPCVVSELESMGLPFLRTKDGFIYQRAFGGQSIHFGGKQA 147
Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFVRGF-----VEEIGIKNGKLAGVFLNGELLK 165
R TG ++ L + + GVNF + + E G G +A +G + +
Sbjct: 148 RRTCAASDRTGHAMLHTLYGQSFQYGVNFFNEYYCLDLIVEDGCCRGVVAMSIDDGTIHR 207
Query: 166 FDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTY 223
F + ++ATGG+ + T K G +A G+P DMEFVQFHPTG G
Sbjct: 208 FRSKYTILATGGYGRCWFTTTSAKSCTGDGTAMVARAGLPAEDMEFVQFHPTGIYGPGV- 266
Query: 224 LITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-------VF 269
LITE RG G LV +GERF+ +L +RDVV RAI L++L G+G V
Sbjct: 267 LITEGARGEGGYLVNSEGERFMERYAPKAKDLASRDVVLRAITLEVLAGRGCGPKKDHVL 326
Query: 270 LDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISV----DIFYRT 322
L + E ++ P + S G+D K+ IP+ P HY MGGI ++
Sbjct: 327 LQLHHLPPEQLHEKLPGISESAHIFAGVDVTKESIPIVPTVHYNMGGIPTLWTGEVVSPR 386
Query: 323 R------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAP 376
+ GL A GE A HGANRL +NSLL+ VV G A T++ K G N
Sbjct: 387 NGDDDAIVPGLLAAGECACASVHGANRLGANSLLDIVVFGKSCANTVIFNLTKEGRNQPE 446
Query: 377 YNFD----ELGDVDSI----------------REIMWNHAGIVRDKSSLLEGLKKLEG-- 414
D + D+D I +E M +A + R + S+L+G +E
Sbjct: 447 LRPDAGESSIADLDGILHNKGDIPVARIRERMKETMALYAAVFRTEESMLKGQGIIEECY 506
Query: 415 -------------------VEADQRLKVVAKAVLTL--ALEREESRGSHYRRDFP 448
+EA + ++ A+LT+ A R ESRG+H R D+P
Sbjct: 507 RDYSHVFVHDKSPVWNSNLIEALELRNLLTNALLTITGAAVRRESRGAHARDDYP 561
>dbj|BAA31212.1| (AB015756) succinate dehydrogenase flavoprotein subunit
[Rhodospirillum rubrum]
Length = 594
Score = 179 bits (450), Expect = 5e-44
Identities = 161/537 (29%), Positives = 236/537 (42%), Gaps = 100/537 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL A LVE+G+ + I S++ AQ GI L + D+ + H+ D
Sbjct: 15 VVGAGGAGLRATFGLVEQGLKTACITKVFPTRSHTVAAQGGIGAALGNMAEDNWKWHMYD 74
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSH------- 110
T++ ++ D++ + + ++ A L +GV F+ E GGH
Sbjct: 75 TVKGADWLGDQDAIEYMCREAIPAVYELEHYGVPFSRTEDGRIYQRPFGGHMRNFGEAPV 134
Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFVRGFVE--------EIGIKNGKLAGVFLNGE 162
R TG ++ L + + F FVE E G+ G +A +G
Sbjct: 135 QRACAAADRTGHAILQTLYQQSLRFNAEF---FVEYFALDLIIEDGVCRGVIAWCMEDGT 191
Query: 163 LLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
+ +F + V+ATGG+ Y G G +A G+PL+DMEFVQFHPTG G
Sbjct: 192 IHRFKSHTTVLATGGYGRAYFSCTSAHTCTGDGNGMVARAGLPLQDMEFVQFHPTGIYGA 251
Query: 221 RTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKGV----- 268
LITE RG G L +GERF+ +L +RDVV+RA+ +++ EG+GV
Sbjct: 252 GC-LITEGARGEGGYLTNSEGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVGPKKD 310
Query: 269 ----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV----DIF 319
L+ G E R P + K G+D +D IPV P HY MGGI ++
Sbjct: 311 HINLHLEHLGPEVLHSRLPGITETAKVFSGVDATRDPIPVLPTVHYNMGGIPTNYHGEVL 370
Query: 320 YRTR------IRGLYAIGEAASNGFHGANRLASNSLLECVVSG-------LEVARTILRE 366
T+ GL A+GE A HGANRL +NSLL+ VV G EV + +
Sbjct: 371 NPTKADPEAIFPGLMAVGECACVSVHGANRLGTNSLLDIVVFGRAAALRAAEVVKPGIAH 430
Query: 367 EPKR--GANDAPYNFDELGDV----------DSIREIMWNHAGIVRDKSSLLEGLKKLEG 414
+P + A+ A D L D +++ M A + R SL EG+ +++
Sbjct: 431 KPLKADAADLALSRLDRLRSAKGAKLTAEIRDDLQQAMQRDAAVFRTTKSLAEGVARVDQ 490
Query: 415 VEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
V A + L A+ + A R+ESRG+H DFP
Sbjct: 491 VAASLADIKLVDTSMIFNTDLAEALELENLMACAQTTIHGAAARQESRGAHAHEDFP 547
>pir||G75456 succinate dehydrogenase, flavoprotein subunit - Deinococcus
radiodurans (strain R1)
>gi|6458673|gb|AAF10525.1|AE001947_8 (AE001947)
succinate dehydrogenase, flavoprotein subunit
[Deinococcus radiodurans]
Length = 583
Score = 179 bits (450), Expect = 5e-44
Identities = 165/533 (30%), Positives = 247/533 (45%), Gaps = 92/533 (17%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
+V +VG G AGL++A+ + GV V+ I S++ AQ GI L ++ D H
Sbjct: 6 DVIVVGAGGAGLMSALYAAKGGVSVACISKLYPTRSHTGAAQGGIGAALGNIQEDHWEWH 65
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSH-GVTFT-------GNELEGGHSHP-- 111
+ DTI+ G Y+ D++ V SK + + H G+ F+ GGH+
Sbjct: 66 MFDTIKGGDYLTDQDAA-EVFSKDIIEVVYELEHMGLPFSRTPEGKIAQRKFGGHTRDFG 124
Query: 112 -----RVFTIKSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKNGKLAGV----FLNG 161
R K TG ++ L + + G F F V ++ I++G+ GV G
Sbjct: 125 KAAVERSCYAKDRTGHMILQTLYQQNVKAGTLFFNEFHVTDLIIEDGRCRGVVAYDLATG 184
Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
EL F A V++A GG+ +++ T+ G L+ KG+PL+DMEF QFHPTG +
Sbjct: 185 ELHTFHAKAVILAAGGYGRVFKITSNALTLTGDLMSIYYRKGLPLQDMEFYQFHPTG-LA 243
Query: 220 RRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGVFLDA 272
+ L+TE +RG G L +GERF + +L RD+VAR++ ++ EG+GV D
Sbjct: 244 KLGILVTEGIRGEGGILRNSNGERFMERYAPTIKDLAPRDIVARSMTTEIREGRGVGKDK 303
Query: 273 RGI---------EDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDI---- 318
I E + + + + + G DP KDL+ V P AHY MGGI D+
Sbjct: 304 DAIHIDLTHLPREVIEGKLAEITDLARTYLGQDPVKDLVMVQPTAHYAMGGIPTDLNGLC 363
Query: 319 ---FYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------EE 367
I GLYA GE A HGANRL +NSL + VV G R E
Sbjct: 364 LSDGNGGSIEGLYAAGEQACVSLHGANRLGTNSLGDLVVFGRRAGRYAAEYAKQVEYAEM 423
Query: 368 PKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVR---DKSSLLEGLKKLE- 413
P+ ++ FD+L ++E M + GI R D + +E +K+L+
Sbjct: 424 PENAEAESRRVFDDLRAASGKDNAAAIRKELQETMMRNVGIFRNGPDMAKQVEIIKELKT 483
Query: 414 -----GV---------EADQRLKV-----VAKAVLTLALEREESRGSHYRRDF 447
GV E + L++ A+A+ + A+ R ESRG+H R DF
Sbjct: 484 RYKNVGVSDTNARYNSELVEALELGFMLDCAEAMASSAVNRTESRGAHDREDF 536
>pir||E70843 probable flavoprotein subunit of succinate dehydrogenase -
Mycobacterium tuberculosis (strain H37RV)
>gi|2894228|emb|CAA17090.1| (AL021841) sdhA
[Mycobacterium tuberculosis]
Length = 590
Score = 179 bits (449), Expect = 7e-44
Identities = 157/535 (29%), Positives = 239/535 (44%), Gaps = 92/535 (17%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHV 62
+V IVG G AG+ AA+ + + S++ AQ G+ L VE D+ H
Sbjct: 8 DVVIVGAGGAGMRAAVEAGPRVRTAVLTKLYPTRSHTGAAQGGMCAALANVEDDNWEWHT 67
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHP---- 111
DT++ G Y+ D++ V + ++ +A L G+ F GGH+
Sbjct: 68 FDTVKGGDYLADQDAVEIMCKEAIDAVLDLEKMGMPFNRTPEGRIDQRRFGGHTRDHGKA 127
Query: 112 ---RVFTIKSETGKHVIPILEKHARELGVNFVRGF---------VEEIGIKNGKLAGVFL 159
R TG ++ L ++ + V F F + G +A
Sbjct: 128 PVRRACYAADRTGHMILQTLYQNCVKHDVEFFNEFYALDLALTQTPSGPVATGVIAYELA 187
Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
G++ F A VV+ATGG +Y+ T+ G IG + KG+PL DMEF QFHPTG
Sbjct: 188 TGDIHVFHAKAVVIATGGSGRMYKTTSNAHTLTGDGIGIVFRKGLPLEDMEFHQFHPTGL 247
Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG--- 267
G LI+EAVRG G +L+ G+GERF+ +L RD+VAR++ L++LEG+G
Sbjct: 248 AG-LGILISEAVRGEGGRLLNGEGERFMERYAPTIVDLAPRDIVARSMVLEVLEGRGAGP 306
Query: 268 ----VFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDIFY 320
V++D R G E + + P + + G+DP +L+PV P HY MGGI +
Sbjct: 307 LKDYVYIDVRHLGEEVLEAKLPDITEFARTYLGVDPVTELVPVYPTCHYLMGGIPTTVTG 366
Query: 321 R------TRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND 374
+ + + GLYA GE A HGANRL +NSLL+ V G D
Sbjct: 367 QVLRDNTSVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAASYAQGHDFVD 426
Query: 375 APYN-----------------FDELGDV-DSIREIMWNHAGIVRDKSSLLEGLKKLEGV- 415
P N + + D+ ++++ M N+A + R + +L + L + +
Sbjct: 427 MPPNPEAMVVGWVSDILSEHGNERVADIRGALQQSMDNNAAVFRTEETLKQALTDIHALK 486
Query: 416 EADQRLKV----------------------VAKAVLTLALEREESRGSHYRRDFP 448
E R+ V +A+ + AL R+ESRG H R D+P
Sbjct: 487 ERYSRITVHDKGKRFNTDLLEAIELGFLLELAEVTVVGALNRKESRGGHAREDYP 541
>pir||T32885 hypothetical protein C34B2.7 - Caenorhabditis elegans
>gi|2804418|gb|AAB97539.1| (AF043693) similar to the
flavoprotein subunit of succinate dehydrogenase
[Caenorhabditis elegans]
Length = 640
Score = 178 bits (448), Expect = 9e-44
Identities = 163/546 (29%), Positives = 244/546 (43%), Gaps = 102/546 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA+ L E G+ ++I S++ AQ G+ L + D+ R H D
Sbjct: 40 VVGAGGAGLRAAMGLSEGGMKTAVITKLFPTRSHTVAAQGGVNAALGNMNPDNWRWHFYD 99
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNEL-EGGH 108
T++ ++ D++ + + ++ A L ++G+ F+ N+ GG
Sbjct: 100 TVKGSDWLGDQDAIHYMTREAERAIIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 159
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
+H R + TG ++ L + + N FV F ++ + GK GV G++
Sbjct: 160 AH-RTCCVADRTGHSLLHTLYGASLQYDCNYFVEYFALDLIMDKGKCIGVVALDIETGQI 218
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F A V+ATGG+ Y G A G+ DMEFVQFHPTG G
Sbjct: 219 HRFRAKNTVLATGGYGRAYFSCTSAHTCTGDGTALTARAGIRNSDMEFVQFHPTGIYGVG 278
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV------ 268
LITE RG G LV GERF+ +L +RDVV+RA+ +++ EG+GV
Sbjct: 279 C-LITEGSRGEGGYLVNSQGERFMERYAPNAKDLASRDVVSRAMTMEINEGRGVGPNKDH 337
Query: 269 -FLDARGI--EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR- 323
+L + E + R P + + G+D K+ IPV P HY MGG+ + Y+ +
Sbjct: 338 IYLQLHHLPAEQLQQRLPGISETAQIFAGVDVTKEPIPVIPTVHYNMGGVPTN--YKGQV 395
Query: 324 -----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE-EPKRG 371
I GLYA GE A++ HGANRL +NSLL+ V+ G A TIL E +P
Sbjct: 396 LDFTPEGGDKVIPGLYAAGECAAHSVHGANRLGANSLLDLVIFGRSCALTILNENKPGDS 455
Query: 372 ANDAPYNFDE------------LGDVDSI------REIMWNHAGIVRDKSSLLEGLKKLE 413
+ P N +E GD+ SI + M HA + R L EG+ K+
Sbjct: 456 IPELPVNCEEKSCDNLNGLLHSKGDISSIELRQKMQMTMQKHAAVFRRGDLLKEGVDKMS 515
Query: 414 GVEADQR------------------------LKVVAKAVLTLALEREESRGSHYRRDFPF 449
+ +Q+ L + A + A R ESRG+H R DF
Sbjct: 516 SIYKEQQNLKACADSGKVWNSELVETLELQNLLINANQTIVAAENRTESRGAHARDDFQE 575
Query: 450 MRKEFE 455
E++
Sbjct: 576 RIDEYD 581
>gb|AAF21611.1|AF018287_5 (AF018287) SdhA; succinate dehydrogenase flavoprotein subunit
[papaya bunchy top disease rickettsia]
Length = 596
Score = 178 bits (448), Expect = 9e-44
Identities = 164/540 (30%), Positives = 257/540 (47%), Gaps = 99/540 (18%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
+V +VG G AGL AA + ++G++ + I S++ AQ GI+ L + D R H
Sbjct: 13 DVIVVGAGGAGLRAAFGMAKEGLNTACISKLFPTRSHTVAAQGGISAALGNMGADDWRWH 72
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEG--------------- 106
+ DT++ ++ D++ + + + +A L +GV F+ E EG
Sbjct: 73 MYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTE-EGKIYQRPFGGMTTEYG 131
Query: 107 -GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----N 160
G + R TG ++ L + + + V F + F ++ +++G+ GV +
Sbjct: 132 KGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLMEDGECRGVVAWNLDD 191
Query: 161 GELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALK-GVPLRDMEFVQFHPTGF 217
G L F A VV+ATGG+ Y F+A G +A++ G+PL+DMEFVQFHPTG
Sbjct: 192 GSLHCFRAHNVVLATGGYGRAY-FSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGI 250
Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-- 268
LITE RG G LV +GERF+ +L +RDVV+RA+ +++ EG+GV
Sbjct: 251 YSAGC-LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGE 309
Query: 269 -------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF- 319
L+ E R P + K G+D K+ IPV P HY MGGI +
Sbjct: 310 HKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHG 369
Query: 320 ---------YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG----LEVARTILRE 366
+ + ++GL +IGEAA HGANRL SNSLL+ VV G L+ A I
Sbjct: 370 QVIIKDGKNHNSVVKGLMSIGEAACVSVHGANRLGSNSLLDLVVFGRSAALKAAELIKPA 429
Query: 367 EPKRGANDAPY-----NFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKK 411
P + ++ FD++ G++ ++ M +HA + R + L EG K
Sbjct: 430 SPHKPVSEEALEKIVSRFDKIRHSSGNISVADLRLKMQRTMQSHASVFRTQEVLNEGAKM 489
Query: 412 L---------------------EGVEADQRLKVVAKAVLTL--ALEREESRGSHYRRDFP 448
+ + VEA + ++ +A++T+ A R+ESRG+H R D+P
Sbjct: 490 ISEIRSSYKDIKINDRSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYP 549
>gi|4759080 succinate dehydrogenase complex, subunit A, flavoprotein precursor;
succinate dehydrogenase complex flavoprotein subunit
precursor [Homo sapiens] >gi|347134|gb|AAA20683.1|
(L21936) succinate dehydrogenase flavoprotein subunit
[Homo sapiens]
Length = 664
Score = 177 bits (445), Expect = 2e-43
Identities = 163/551 (29%), Positives = 247/551 (44%), Gaps = 104/551 (18%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + +VG G AGL AA L E G + + + S++ AQ GI L +E D+ R
Sbjct: 61 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
H DT++ ++ D++ + + ++ A L ++G+ F+ E
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180
Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
+GG +H R + TG ++ L + + FV F ++ ++NG+ GV
Sbjct: 181 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 239
Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
+G + + A VVATGG+ Y + G + G+P +D+EFVQFHPTG
Sbjct: 240 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTG 299
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
G LITE RG G L+ GERF+ +L +RDVV+R++ L++ EG+G
Sbjct: 300 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCG 358
Query: 268 -----VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
V+L + E R P + + + G+D K+ IPV P HY MGGI +
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN-- 416
Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP 368
Y+ ++ GLYA GEAA HGANRL +NSLL+ VV G A +I EE
Sbjct: 417 YKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI--EES 474
Query: 369 KRGANDAP-----------YNFDELGDVD----------SIREIMWNHAGIVRDKSSLLE 407
R + P N D+L D S+++ M NHA + R S L E
Sbjct: 475 CRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQE 534
Query: 408 GLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYR 444
G K+ + D Q L + A + A R+ESRG+H R
Sbjct: 535 GCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAR 594
Query: 445 RDFPFMRKEFE 455
D+ E++
Sbjct: 595 EDYKVRIDEYD 605
>sp|P31040|DHSA_HUMAN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
COMPLEX II) >gi|625366|pir||JX0336 succinate
dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
chain precursor, mitochondrial - human
>gi|506338|dbj|BAA06332.1| (D30648) flavoprotein subunit
of complex II [Homo sapiens]
Length = 664
Score = 177 bits (445), Expect = 2e-43
Identities = 163/551 (29%), Positives = 247/551 (44%), Gaps = 104/551 (18%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + +VG G AGL AA L E G + + + S++ AQ GI L +E D+ R
Sbjct: 61 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
H DT++ ++ D++ + + ++ A L ++G+ F+ E
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180
Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
+GG +H R + TG ++ L + + FV F ++ ++NG+ GV
Sbjct: 181 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 239
Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
+G + + A VVATGG+ Y + G + G+P +D+EFVQFHPTG
Sbjct: 240 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTG 299
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
G LITE RG G L+ GERF+ +L +RDVV+R++ L++ EG+G
Sbjct: 300 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCG 358
Query: 268 -----VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
V+L + E R P + + + G+D K+ IPV P HY MGGI +
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN-- 416
Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP 368
Y+ ++ GLYA GEAA HGANRL +NSLL+ VV G A +I EE
Sbjct: 417 YKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI--EES 474
Query: 369 KRGANDAP-----------YNFDELGDVD----------SIREIMWNHAGIVRDKSSLLE 407
R + P N D+L D S+++ M NHA + R S L E
Sbjct: 475 CRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQE 534
Query: 408 GLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYR 444
G K+ + D Q L + A + A R+ESRG+H R
Sbjct: 535 GCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAR 594
Query: 445 RDFPFMRKEFE 455
D+ E++
Sbjct: 595 EDYKVRIDEYD 605
>dbj|BAA21636.1| (D30650) flavoprotein subunit of complex II [Ascaris suum]
Length = 645
Score = 176 bits (441), Expect = 6e-43
Identities = 160/547 (29%), Positives = 245/547 (44%), Gaps = 99/547 (18%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGI--AFPLVEGDSIRIH 61
+V I+G G AGL AA+ L E G +++ S++ AQ GI A + D + H
Sbjct: 43 DVVIIGAGGAGLRAAMGLGEAGFKTAVVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWH 102
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNELEG 106
DT + ++ D+ + + + EA + L + G+ F+ N
Sbjct: 103 FYDTAKGSDWLGDQNAMHYLTRNAVEAVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGK 162
Query: 107 GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NG 161
G R + TG ++ L ++ F + F ++ + G+ GV +G
Sbjct: 163 GGVAKRTCCVADRTGHSMLHTLYGNSLRCHCTFFIEYFALDLLMDKGRCVGVIALCLEDG 222
Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
+ +F + +VATGG+ Y N G G+ L D+EF+QFHPTG G
Sbjct: 223 TIHRFRSKRTIVATGGYGRAYFSCTTAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYG 282
Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDA 272
LITE RG G LV +GERF+ +L +RDVV+RA ++++EG+GV +
Sbjct: 283 VGC-LITEGSRGEGGFLVNSEGERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEK 341
Query: 273 RGI---------EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT 322
I E R P + K G+D K+ IPV P HY MGGI + Y+
Sbjct: 342 DHIYLQLHHLPAEQLHQRLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGIPTN--YKA 399
Query: 323 RI------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTI------- 363
++ GLYA GE A + HGANRL +NSLL+ VV G + I
Sbjct: 400 QVIKYTKEGGDKIVPGLYACGECACHSVHGANRLGANSLLDAVVFGRACSINIKEELKPD 459
Query: 364 --LREEPKRGANDAPYNFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKK 411
+ E P+ ++ N D + GDV ++++ M HAG+ R L EG+KK
Sbjct: 460 EKIPELPEGAGEESIANLDAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDILAEGVKK 519
Query: 412 LEGVEAD-QRLKVVAKAV-----LTLALE-----------------REESRGSHYRRDFP 448
+ + + +RLK +++ LT +LE R+ESRG+H R DFP
Sbjct: 520 MMDLSKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKESRGAHARDDFP 579
Query: 449 FMRKEFE 455
E++
Sbjct: 580 KREDEYD 586
>gb|AAG20080.1| (AE005087) L-aspartate oxidase; NadB [Halobacterium sp. NRC-1]
Length = 509
Score = 176 bits (441), Expect = 6e-43
Identities = 150/495 (30%), Positives = 229/495 (45%), Gaps = 58/495 (11%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSII--GPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
+V ++G G+AG AA++ +G V + + D+++ AQ GIA + +S++
Sbjct: 8 DVLVLGSGIAGCGAALAAAREGASVLVATKAQQPADASTDWAQGGIATTRDDPESLK--- 64
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLV--SHGVTFTGNE-----LEGGHSHPRVFT 115
D + AG D E V ++ + A ++ + GV F G E E HS R+
Sbjct: 65 RDILAAGDGEADPEAVDALVGDAAAAVEDVLVDTLGVPFDGEEGFDYAREAAHSAARILH 124
Query: 116 IKSETGKHVI-PILEKHARELGVNFVRGFVE-EIGIKNGKLAGVFLN-----------GE 162
+ + TG H++ P L V+ + ++ G + G L+ G
Sbjct: 125 VDAATGHHILGPFLRHLDAHENVDMLEDAAALDLITDEGAVTGALLDRNPRTGDRAETGV 184
Query: 163 LLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
+ + V+ATGG LYR + + + G + AL G + D E+VQFHPT +
Sbjct: 185 PVFAGSTVLATGGIGDLYRRSTNPRGSTGDGVAMAALAGADVTDAEYVQFHPTAYDDADP 244
Query: 223 YLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDARGIE 276
+L++EAVRG GA L DGERF+ EL RDVVARA+ + V LD +
Sbjct: 245 FLVSEAVRGEGALLRNADGERFMPDYHEDAELAPRDVVARAVAAERDATGEVRLDVSPLA 304
Query: 277 DFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASN 336
F + FP + G+D + IPV P H+ GG++VD RT + L+A+GE A
Sbjct: 305 -FAEEFPGLAEACADRGVD-WETGIPVAPCEHFLCGGVAVDTVGRTSLDRLFAVGECART 362
Query: 337 GFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAPYNFDELGDVDS--------- 387
G HGANRLAS SLLE +V GL T ++ ++ P D D+
Sbjct: 363 GVHGANRLASTSLLEGLVWGLRAGETAAGDDRAPAPSEPPELRDRDPDLPDGFAAEKFRR 422
Query: 388 IREIMWNHAGIVRDKSSLLEG---LKKLEG-VEADQRLK------------VVAKAVLTL 431
+R +M H G+ R + L L++L+G V++ R + VV +
Sbjct: 423 LRRVMDEHVGLRRTGADLQRAQGVLRRLKGEVDSYARTRTSRDLYQLRNAAVVGLLIARA 482
Query: 432 ALEREESRGSHYRRD 446
A E ES G H+R D
Sbjct: 483 AGENPESAGCHHRSD 497
>gb|AAD51006.1| (AF171030) succinate dehydrogenase flavoprotein subunit [Homo
sapiens]
Length = 664
Score = 174 bits (436), Expect = 2e-42
Identities = 162/551 (29%), Positives = 245/551 (44%), Gaps = 104/551 (18%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + +VG G AGL AA L E G + + + S++ AQ GI L +E D+ R
Sbjct: 61 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
H DT++ ++ D++ + + ++ A L ++G+ F+ E
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180
Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
+GG +H R + TG ++ L + + FV F ++ ++NG+ GV
Sbjct: 181 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 239
Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
+G + + A VVATGG+ Y + G + G+P +D+EFVQFHPTG
Sbjct: 240 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTG 299
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
G LITE RG G L+ GERF+ +L +RDVV+R++ L++ EG+
Sbjct: 300 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRDCG 358
Query: 268 -----VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
V+L + E R P + + + G+D KD IPV P HY MGGI +
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKDPIPVLPTVHYNMGGIPTN-- 416
Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP 368
Y+ ++ GLYA GEAA HGANRL +NSLL+ VV G A +I EE
Sbjct: 417 YKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI--EES 474
Query: 369 KRGANDAP-----------YNFDELGDVD----------SIREIMWNHAGIVRDKSSLLE 407
R + P N D+L D S+++ M NHA + R S L E
Sbjct: 475 CRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQE 534
Query: 408 GLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYR 444
G K+ + D Q L + A + A R+ESRG+H R
Sbjct: 535 GCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGTHAR 594
Query: 445 RDFPFMRKEFE 455
+ E++
Sbjct: 595 EGYKVQIDEYD 605
>pir||E83448 succinate dehydrogenase (A subunit) PA1583 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947546|gb|AAG04972.1|AE004586_10 (AE004586)
succinate dehydrogenase (A subunit) [Pseudomonas
aeruginosa]
Length = 590
Score = 174 bits (436), Expect = 2e-42
Identities = 159/537 (29%), Positives = 234/537 (42%), Gaps = 99/537 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEGD---SIRIHVL 63
IVGGG AG+ AA+ L + G +++ S++ AQ GI + D R H+
Sbjct: 13 IVGGGGAGMRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMY 72
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHP------------ 111
DT++ YI D++ + + S EA L G+ F+ E + P
Sbjct: 73 DTVKGSDYIGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGG 132
Query: 112 ---RVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKN--GKLAGVFL----NGE 162
R TG ++ L + + G +F+ + +KN G + G+ GE
Sbjct: 133 QAARTCAAADRTGHALLHTLYQANLKNGTSFLNEWYAVDLVKNQDGAVVGIIAICIETGE 192
Query: 163 L--LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
++ AVV+ATGG +Y T N G +G GVP++D+E QFHPTG G
Sbjct: 193 TVYIRSKAVVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGA 252
Query: 221 RTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKGV----- 268
L+TE RG G L+ GERF+ +L RDVVAR++ ++L G GV
Sbjct: 253 GV-LVTEGCRGEGGYLINAHGERFMERYAPNAKDLAGRDVVARSMVKEVLAGNGVGPNKD 311
Query: 269 ----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT- 322
LD G E R P + + K +DP IPV P HY MGG++ +I +
Sbjct: 312 HVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVIPTCHYMMGGVATNIHGQAI 371
Query: 323 ---------RIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEPK 369
+ GL+A+GE A HGANRL NSLL+ VV +GL + + +
Sbjct: 372 TQDANGNDQIVEGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIDA 431
Query: 370 RGA--NDAPYNFDELGDVD-------------SIREIMWNHAGIVRDKSSLLEGLKKL-- 412
RGA +D +F L V+ ++ M N+ G+ R + +G+ +L
Sbjct: 432 RGASESDLEASFKRLNGVNERTSGEEVAPLKRELQSCMQNYFGVFRTGEYMQKGIAQLAD 491
Query: 413 ----------------------EGVEADQRLKVVAKAVLTLALEREESRGSHYRRDF 447
E +E Q L VA+A A R+ESRG+H R DF
Sbjct: 492 LRERIANVKINDKSQAFNTARIEALEL-QNLLEVAEATAIAAEHRKESRGAHAREDF 547
>sp|P20922|FRDA_PROVU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|66068|pir||RDEBFV
fumarate reductase (EC 1.3.99.1) flavoprotein - Proteus
vulgaris >gi|581487|emb|CAA29501.1| (X06144) frdA (AA
1-598) [Proteus vulgaris]
Length = 598
Score = 173 bits (435), Expect = 3e-42
Identities = 166/540 (30%), Positives = 238/540 (43%), Gaps = 107/540 (19%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
++ I+G G AGL AAI+ E + I + P S++ A+ G A DS
Sbjct: 7 DIAIIGAGGAGLRAAIAAAEANPQLKIALISKVYPMR--SHTVAAEGGSAAVTQAHDSYD 64
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPR 112
H DT+ G ++ +++VV + + L G ++ E GG R
Sbjct: 65 FHFNDTVSGGDWLCEQDVVDYFVEHCPTEMTQLELWGCPWSRKEDGSVNVRRFGGMKIER 124
Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGVFLNGEL------L 164
+ +TG H++ L + + + F FV +I + G GV + +
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDEGHARGVVAINMMEGTKVQI 184
Query: 165 KFDAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
+ +AV++ATGG +YRF N G++ GD +AL+ GVPLRDMEFVQ+HPTG G
Sbjct: 185 RANAVIMATGGAGRVYRFNT----NGGIVTGDGMGIALRHGVPLRDMEFVQYHPTGLPGS 240
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIY--- 259
L+TE RG G LV DG R++ EL RD V++A +
Sbjct: 241 GI-LMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGKPENKYMELGPRDKVSQAFWHEW 299
Query: 260 -----LKMLEGKGVFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
+K G V LD R G + +R P++ + K G+DP + IPV P AHYTM
Sbjct: 300 RAGRTIKTHRGDVVHLDLRHLGAKKLHERLPFICELAKAYVGVDPVNEPIPVRPTAHYTM 359
Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREE 367
GGI + TRI+GL+A+GE +S G HGANRL SNSL E VV +G E R
Sbjct: 360 GGIETNQRTETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEEAVRRAQEAT 419
Query: 368 PKRGA------NDAPYNFDELGDV----------DSIREIMWNHAGIVRDKSSLLEGLKK 411
P + D N +L + D + E M GI R + + + K
Sbjct: 420 PANASALDAQTRDIEDNLKKLMNQKGSENWAQIRDEMGEAMEEGCGIYRTPELMQKTIDK 479
Query: 412 LEGVEADQRLK-------------------------VVAKAVLTLALEREESRGSHYRRD 446
L E +R K VA+ + A R+ESRG+H R D
Sbjct: 480 L--TELKERFKHVEIKDTSSVFNTDLLYKIELGFGLDVAECMAHSAFNRKESRGAHQRLD 537
>gb|AAD01243.1| (AF005272) fumarate reductase flavoprotein subunit homolog
[Haemophilus paragallinarum]
Length = 382
Score = 173 bits (434), Expect = 4e-42
Identities = 137/389 (35%), Positives = 194/389 (49%), Gaps = 58/389 (14%)
Query: 39 SNSYLAQAGIAFPLVEGDSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVT 98
S++ A+ G A + E DS H DT+ G ++ +++VV + S + L G
Sbjct: 3 SHTVAAEGGAAAVIKEEDSYEKHFHDTVAGGDWLCEQDVVEYFVEHSPVEMTQLERWGCP 62
Query: 99 FTGNE-------LEGGHSHPRVFTIKSETGKHVIPILEKHAREL------GVNFVRGFVE 145
++ E GG R + +TG H++ L + + + +FV +
Sbjct: 63 WSRKEDGDVNVRRFGGMKIERTWFAADKTGFHLLHTLFQTSMQFPQIQRFDEHFVLDILV 122
Query: 146 EIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGD---LALK 200
+ G G +A + G L++ +A VV+ATGG +RF N G++ GD +A +
Sbjct: 123 DDGHARGMVAMNMMEGTLVQINANAVVIATGGGCRAFRFNT----NGGIVTGDGLSMAYR 178
Query: 201 -GVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN------------- 246
GVPLRDMEFVQ+HPTG + L+TE RG G LV DG R++
Sbjct: 179 HGVPLRDMEFVQYHPTG-LPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIGKP 237
Query: 247 -----ELETRDVVARAIYLKMLEG------KGV---FLDAR--GIEDFKDRFPYVYSVLK 290
EL RD V++A + + +G KGV LD R G + +R P++ + K
Sbjct: 238 ENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELAK 297
Query: 291 K-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSL 349
EG+DP K IPV PV HYTMGGI VD TRI+GL+A+GE AS+G HGANRL SNSL
Sbjct: 298 AYEGVDPAKAPIPVRPVVHYTMGGIEVDFNSETRIKGLFAVGECASSGLHGANRLGSNSL 357
Query: 350 LECVVSGLEVARTILREEPKRGANDAPYN 378
E VV G R +R A +P N
Sbjct: 358 AELVVLG----RVAGEYAAQRAAEASPAN 382
>sp|P00363|FRDA_ECOLI FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|66067|pir||RDECFF
fumarate reductase (EC 1.3.99.1) flavoprotein -
Escherichia coli >gi|536998|gb|AAA97053.1| (U14003)
fumarate reductase, flavoprotein subunit [Escherichia
coli] >gi|1790597|gb|AAC77114.1| (AE000487) fumarate
reductase, anaerobic, flavoprotein subunit [Escherichia
coli K12]
Length = 602
Score = 173 bits (433), Expect = 5e-42
Identities = 163/538 (30%), Positives = 246/538 (45%), Gaps = 103/538 (19%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
++ IVG G AGL AAI+ + + I + P S++ A+ G A + DS
Sbjct: 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR--SHTVAAEGGSAAVAQDHDSFE 64
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPR 112
H DT+ G ++ +++VV + + L G ++ GG R
Sbjct: 65 YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 124
Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGV----FLNGELLKF 166
+ +TG H++ L + + + F FV +I + +G + G+ + G L++
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQI 184
Query: 167 --DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
+AVV+ATGG +YR+ N G++ GD +AL GVPLRDMEFVQ+HPTG G
Sbjct: 185 RANAVVMATGGAGRVYRYNT----NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS 240
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLKM 262
L+TE RG G LV +G R++ EL RD V++A + +
Sbjct: 241 GI-LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEW 299
Query: 263 LEGKG--------VFLDARGIEDFK--DRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
+G V+LD R + + K +R P++ + K G+DP K+ IPV P AHYTM
Sbjct: 300 RKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTM 359
Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEPKR 370
GGI D TRI+GL+A+GE +S G HGANRL SNSL E VV G L + R
Sbjct: 360 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAG 419
Query: 371 GANDAPYNFDELGDVDSIREI-------------------MWNHAGIVRDKSSLLEGLKK 411
N+A G ++++ M GI R + + + K
Sbjct: 420 NGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 479
Query: 412 L-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
L E E +R+++ VA+ + A+ R+ESRG+H R D
Sbjct: 480 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pdb|1FUM|A Chain A, Structure Of The E. Coli Fumarate Reductase Respiratory
Complex >gi|5542239|pdb|1FUM|M Chain M, Structure Of The
E. Coli Fumarate Reductase Respiratory Complex
Length = 601
Score = 173 bits (433), Expect = 5e-42
Identities = 163/538 (30%), Positives = 246/538 (45%), Gaps = 103/538 (19%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
++ IVG G AGL AAI+ + + I + P S++ A+ G A + DS
Sbjct: 6 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR--SHTVAAEGGSAAVAQDHDSFE 63
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPR 112
H DT+ G ++ +++VV + + L G ++ GG R
Sbjct: 64 YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 123
Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGV----FLNGELLKF 166
+ +TG H++ L + + + F FV +I + +G + G+ + G L++
Sbjct: 124 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQI 183
Query: 167 --DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
+AVV+ATGG +YR+ N G++ GD +AL GVPLRDMEFVQ+HPTG G
Sbjct: 184 RANAVVMATGGAGRVYRYNT----NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS 239
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLKM 262
L+TE RG G LV +G R++ EL RD V++A + +
Sbjct: 240 GI-LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEW 298
Query: 263 LEGKG--------VFLDARGIEDFK--DRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
+G V+LD R + + K +R P++ + K G+DP K+ IPV P AHYTM
Sbjct: 299 RKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTM 358
Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEPKR 370
GGI D TRI+GL+A+GE +S G HGANRL SNSL E VV G L + R
Sbjct: 359 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAG 418
Query: 371 GANDAPYNFDELGDVDSIREI-------------------MWNHAGIVRDKSSLLEGLKK 411
N+A G ++++ M GI R + + + K
Sbjct: 419 NGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 478
Query: 412 L-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
L E E +R+++ VA+ + A+ R+ESRG+H R D
Sbjct: 479 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 536
>gb|AAF21045.1|AF211482_1 (AF211482) SdhA [Dictyostelium discoideum]
Length = 626
Score = 172 bits (432), Expect = 7e-42
Identities = 159/541 (29%), Positives = 248/541 (45%), Gaps = 109/541 (20%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA+ L EKG + I S++ AQ GI L + D R H D
Sbjct: 44 VVGAGGAGLRAALGLTEKGYKTACITKLFPTRSHTVAAQGGINAALGNADQDDWRWHAYD 103
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSE----- 119
T++ ++ D++ + + ++ L +GV F+ ++ G + R F +S+
Sbjct: 104 TVKGSDFLGDQDAIHYMCKEAVPTVLELEQYGVPFS--RMDDGRIYQRAFGGQSKNFGKG 161
Query: 120 ------------TGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NGE 162
TG ++ L A + F + FV ++ ++NG GV +G
Sbjct: 162 GQATRCCAAADRTGHALLHTLYGQAVKHNTKFFIEYFVTDLIMENGDCRGVVAINLEDGT 221
Query: 163 LLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
+ +F A V+ATGG+ Y G + G+P +D+EFVQFHPTG G
Sbjct: 222 IHRFRSHATVIATGGYGRAYFSATSAHTCTGDGNAMVIRAGLPCQDLEFVQFHPTGIYGS 281
Query: 221 RTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGVF---- 269
LITE RG G L+ GERF V +L +RDVV+R+ +++ EG+GV
Sbjct: 282 GC-LITEGARGEGGYLLNSSGERFMPRYAPSVADLASRDVVSRSETMEIREGRGVGPEKD 340
Query: 270 -----LDARGIEDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
L E +R P + + + G+D K+ IPV P HY MGGI + Y+ +
Sbjct: 341 HCLLNLTHLSPEIIDERLPGIRETAMIFAGVDVTKEPIPVIPTVHYNMGGIPTN--YKGQ 398
Query: 324 I-----------RGLYAIGEAASNGFHGANRLASNSLLECVVSGL----EVARTILREEP 368
+ +GLYA GE+A HGANRL +NSLL+ VV G E+ T+ ++ P
Sbjct: 399 VITQVDGKDKLVKGLYAAGESACVSVHGANRLGANSLLDIVVFGRAVANEIENTLAKDTP 458
Query: 369 KRGANDAPYNFDE--LGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLK 410
+ P N E + ++D+IR +IM +A + RD L EG++
Sbjct: 459 HK---PLPPNAGEESIANIDAIRFSNGTRSTAEIRLEMQKIMQRNAAVFRDGQVLKEGVE 515
Query: 411 KLEG----------------------VEADQRLKVVAKAVLTL--ALEREESRGSHYRRD 446
++ +E+ + ++ +AVLT+ A R+ESRG+H R D
Sbjct: 516 LIDKCARSLINDLKTTDRTMIWNTDLIESLELQNLMTQAVLTMHSAEARKESRGAHARED 575
Query: 447 F 447
+
Sbjct: 576 Y 576
>gi|6322701 flavoprotein subunit of succinate dehydrogenase; Sdh1p
[Saccharomyces cerevisiae]
>gi|231993|sp|Q00711|DHSA_YEAST SUCCINATE DEHYDROGENASE
[UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF COMPLEX II)
>gi|479587|pir||S34793 succinate dehydrogenase
(ubiquinone) (EC 1.3.5.1) flavoprotein precursor,
mitochondrial - yeast (Saccharomyces cerevisiae)
>gi|172551|gb|AAA35022.1| (M86909) succinate
dehydrogenase flavoprotein subunit [Saccharomyces
cerevisiae] >gi|172554|gb|AAA35024.1| (M94874) succinate
dehydrogenase flavoprotein [Saccharomyces cerevisiae]
>gi|172557|gb|AAA35026.1| (M86746) succinate
dehydrogenase [Saccharomyces cerevisiae]
>gi|407500|emb|CAA81506.1| (Z26877) unknown
[Saccharomyces cerevisiae] >gi|486254|emb|CAA81989.1|
(Z28148) ORF YKL148c [Saccharomyces cerevisiae]
>gi|1582556|prf||2118404T ORF [Saccharomyces cerevisiae]
Length = 640
Score = 171 bits (430), Expect = 1e-41
Identities = 156/538 (28%), Positives = 238/538 (43%), Gaps = 100/538 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
++G G AGL AA L E G + I S++ AQ GI L + D+ + H+ D
Sbjct: 57 VIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNWKWHMYD 116
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF---------- 114
T++ ++ D++ + + ++ ++ L +GV F + E G + R F
Sbjct: 117 TVKGSDWLGDQDSIHYMTREAPKSIIELEHYGVPF--SRTENGKIYQRAFGGQTKEYGKG 174
Query: 115 -------TIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGE 162
+ TG ++ L A + F+ F ++ NG++ GV +G
Sbjct: 175 AQAYRTCAVADRTGHALLHTLYGQALRHDTHFFIEYFALDLLTHNGEVVGVIAYNQEDGT 234
Query: 163 LLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
+ +F A ++ATGG+ Y G ++ G PL+D+EFVQFHP+G G
Sbjct: 235 IHRFRAHKTIIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLQDLEFVQFHPSGIYGS 294
Query: 221 RTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKGV----- 268
LITE RG G LV +GERF+ +L RDVV+RAI +++ EG+GV
Sbjct: 295 GC-LITEGARGEGGFLVNSEGERFMERYAPTAKDLACRDVVSRAITMEIREGRGVGKKKD 353
Query: 269 --FLDARGI--EDFKDRFPYVYSVLK-KEGIDPGKDLIPVTPVAHYTMGGI-------SV 316
+L + E K+R P + G+D K+ IP+ P HY MGGI ++
Sbjct: 354 HMYLQLSHLPPEVLKERLPGISETAAIFAGVDVTKEPIPIIPTVHYNMGGIPTKWNGEAL 413
Query: 317 DIFYRTR----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTIL-------- 364
I T I GL A GEAA HGANRL +NSLL+ VV G VA T+
Sbjct: 414 TIDEETGEDKVIPGLMACGEAACVSVHGANRLGANSLLDLVVFGRAVAHTVADTLQPGLP 473
Query: 365 -REEPKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLE 413
+ P ++ N D+L + + ++++ M + R +SSL EG++ +
Sbjct: 474 HKPLPSDLGKESIANLDKLRNANGSRSTAEIRMNMKQTMQKDVSVFRTQSSLDEGVRNIT 533
Query: 414 GVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
VE Q L A A R+ESRG+H R D+P
Sbjct: 534 AVEKTFDDVKTTDRSMIWNSDLVETLELQNLLTCASQTAVSAANRKESRGAHAREDYP 591
>gb|AAA23437.1| (J01611) fumarate reductase flavoprotein subunit [Escherichia coli]
Length = 602
Score = 171 bits (429), Expect = 1e-41
Identities = 163/538 (30%), Positives = 246/538 (45%), Gaps = 103/538 (19%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
++ IVG G AGL AAI+ + + I + P S++ A+ G A + DS
Sbjct: 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR--SHTVAAEGGSAAVAQDHDSFE 64
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPR 112
H DT+ G ++ +++VV + + L G ++ GG R
Sbjct: 65 YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 124
Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGV----FLNGELLKF 166
+ +TG H++ L + + + F FV +I + +G + G+ + G L++
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQI 184
Query: 167 --DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
+AVV+ATGG +YR+ N G++ GD +AL GVPLRDMEFVQ+HPTG G
Sbjct: 185 RANAVVMATGGAGRVYRYNT----NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS 240
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLKM 262
L+TE RG G LV +G R++ EL RD V++A + +
Sbjct: 241 GI-LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEW 299
Query: 263 LEGKG--------VFLDARGIEDFK--DRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
+G V+LD R + + K +R P++ + K G+DP K+ IPV P AHYTM
Sbjct: 300 RKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTM 359
Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEPKR 370
GGI D TRI+GL+A+GE +S G HGANRL SNSL E VV G L + R
Sbjct: 360 GGIETDQNCETRIKGLFAVGECSSVGPHGANRLGSNSLAELVVFGRLAGEQATERAATAG 419
Query: 371 GANDAPYNFDELGDVDSIREI-------------------MWNHAGIVRDKSSLLEGLKK 411
N+A G ++++ M GI R + + + K
Sbjct: 420 NGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 479
Query: 412 L-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
L E E +R+++ VA+ + A+ R+ESRG+H R D
Sbjct: 480 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pir||F82050 fumarate reductase, flavoprotein chain VC2656 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657248|gb|AAF95797.1| (AE004331) fumarate
reductase, flavoprotein subunit [Vibrio cholerae]
Length = 602
Score = 171 bits (429), Expect = 1e-41
Identities = 160/540 (29%), Positives = 247/540 (45%), Gaps = 99/540 (18%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKG--VDVSIIGPK-SKDSNSYLAQAGIAFPLVEGDS 57
++ ++ ++G G AGL AI+ E ++V++I S++ A+ G A + + DS
Sbjct: 3 ILTTDIAVIGAGGAGLRTAIAAAEANPHLEVALISKVYPMRSHTVAAEGGSAAVIKDEDS 62
Query: 58 IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
+ H DT+ G ++ +++VV ++ +T + G ++ E GG
Sbjct: 63 LDNHFNDTVGGGDWLCEQDVVEYFVANATREMIQMEQWGCPWSRKENGEVNVRRFGGMKV 122
Query: 111 PRVFTIKSETGKHVIPILEKHA------RELGVNFVRGFVEEIGIKNGKLAGVFLNGEL- 163
R + +TG H++ L + + + L FV + + G G +A GEL
Sbjct: 123 ERTWFAADKTGFHMLHTLFQTSMKYPQIKRLDEYFVVDLLVDEGEIQGLIAIHMSEGELV 182
Query: 164 -LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFI 218
+K +VV+ATGG +Y N G++ GD +A + GVPLRDMEFVQ+HPTG
Sbjct: 183 TIKAKSVVLATGGAGRVYHCNT----NGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLP 238
Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYL 260
G L+TE RG G +V G R++ EL RD V++A +
Sbjct: 239 GTGI-LMTEGCRGEGGIIVNKHGYRYLQDYGMGPETPVGQPKNKYMELGPRDKVSQAFWH 297
Query: 261 KMLEGKG--------VFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHY 309
+ +G V LD R G E ++R P++ + K +DP K+ IP+ P HY
Sbjct: 298 EQQKGNTIKHPLGDVVHLDLRHLGEEYLQERLPFICELAKAYVNVDPAKEPIPIRPTVHY 357
Query: 310 TMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEP 368
TMGGI + TRI+GL+A+GE AS G HGANRL SNSL E VV G + + + R
Sbjct: 358 TMGGIETNGECETRIKGLFAVGECASVGLHGANRLGSNSLAEFVVFGRVAGEKAVERAAE 417
Query: 369 KRGANDAPYNFDELGDVDSIREIMWNH-------------------AGIVRDKSSLLEGL 409
+G N+ D I +M GI R + + E +
Sbjct: 418 FKGWNEKAIAAQVKAVEDRIAALMQQEGDENWATIRTEMGHTMEAGCGIYRQEDLMQETI 477
Query: 410 KKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
KL E E +R+ + VA+A++ A+ R+ESRG+H R D
Sbjct: 478 DKLAELKERYKRISIKDKGKVFNTDLLYAIEVGYGLDVAEAMVHSAILRKESRGAHQRLD 537
>pir||T44962 succinate dehydrogenase chain A homolog [imported] - Natronomonas
pharaonis >gi|1524302|emb|CAA68982.1| (Y07709) SDH
subunit A-homologue; flavoprotein [Natronomonas
pharaonis]
Length = 611
Score = 171 bits (428), Expect = 2e-41
Identities = 130/391 (33%), Positives = 194/391 (49%), Gaps = 40/391 (10%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEGDSIRIHVL 63
+V +VG G AGL AAI+ E+G DV+++ S++ A+ GI + +GD +H
Sbjct: 7 DVIVVGAGGAGLRAAIAAHEEGADVAMVTKLHPVRSHTGAAEGGINAAIRDGDDWELHAY 66
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHPRVFTI 116
DT++ Y+ D + + + E L G+ F+ + GG S PR
Sbjct: 67 DTMKGSDYLGDAPAIETLAQDAPEEVIQLEHWGMPFSREDDGRVSQRPFGGLSFPRTTYA 126
Query: 117 KSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKN----------GKLAGVFLNGELLK 165
+ETG H++ + + + G+ F V E+ + + G +A +G+++
Sbjct: 127 GAETGHHLLHTMYEQVVKRGIKVYDEFYVSELAVTDHDDPEDRECHGCVAYDIKSGDIVG 186
Query: 166 FDA---VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
F A V++ATGG ++ T N G GVP+ DMEFVQFHPT +
Sbjct: 187 FRATGGVILATGGDGQVFDHTTNAVANTGDGPAMAYRAGVPVEDMEFVQFHPTT-LPSTG 245
Query: 223 YLITEAVRGAGAKLVTGDGERFV---------NELETRDVVARAIYLKMLEGKG-----V 268
LI+E VRG G L +GERF+ EL +RDVV+RA ++ EG+G V
Sbjct: 246 VLISEGVRGEGGILYNSEGERFMFEYGYANNDGELASRDVVSRAELTEVNEGRGINDEYV 305
Query: 269 FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIR 325
FLD R G E DR + + + EG++P ++ +PV P HY MGG+ + T I
Sbjct: 306 FLDMRHLGDERINDRLENIIHLAEDFEGVNPVEEPMPVKPGQHYHMGGVETNEHGETCID 365
Query: 326 GLYAIGEAASNGFHGANRLASNSLLECVVSG 356
GLYA GE A HG+NRL N+L E +V G
Sbjct: 366 GLYAAGECACASVHGSNRLGGNALPELIVFG 396
>sp|P51054|DHSA_COXBU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
>gi|2117543|pir||I40849 succinate dehydrogenase (EC
1.3.99.1) - Coxiella burnetii >gi|495755|gb|AAA74133.1|
(L33409) succinate dehydrogenase [Coxiella burnetii]
Length = 587
Score = 170 bits (427), Expect = 3e-41
Identities = 163/540 (30%), Positives = 242/540 (44%), Gaps = 106/540 (19%)
Query: 8 IVGGGLAGLVAAISLVE----KGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIH 61
IVG G AGL AA+ + + K VS + P S++ AQ GIA L V D H
Sbjct: 13 IVGAGGAGLRAALEMAQSRQYKVAVVSKVFPTR--SHTVSAQGGIAAALGNVVPDKPIWH 70
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTG-------NELEGGHSHP--- 111
+ DT++ Y+ D++ + + ++ + L +G+ F+ GGH+
Sbjct: 71 MFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFGK 130
Query: 112 ----RVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFL--- 159
R TG ++ L + E G +F + E GI G +AG+
Sbjct: 131 EMARRTCACADRTGHAMLHTLYQKNVEAGTHF---YYEWYGIDLVRGAQGGIAGMIAMNM 187
Query: 160 -NGELLKFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
EL+ F A + ATGG +Y T+ N G IG + G+P++DMEF QFHPTG
Sbjct: 188 ETSELVFFKSRATIFATGGAGRIYETTSNAYTNTGDGIGMVLRAGLPVQDMEFWQFHPTG 247
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGV- 268
G LITE RG G L+ DGERF + +L+ RDVVAR+I +++ G GV
Sbjct: 248 IYGVGC-LITEGARGEGGYLINKDGERFMERYSPHLKDLDCRDVVARSILQEVMAGGGVG 306
Query: 269 --------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF 319
LD G + ++R P + + +K +D K+ IP+ P HY MGGI +I
Sbjct: 307 PKKDHVLLKLDHLGEKVLRERLPGIIELSEKFANVDITKEPIPILPTCHYMMGGIPTNIH 366
Query: 320 YRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILR 365
+ I GL+A GE A HGANRL +NSLL+ VV GL + +
Sbjct: 367 GQALTVDENGKDQIIEGLFAAGECACVSVHGANRLGTNSLLDLVVFGRAIGLHLEEALKT 426
Query: 366 EEPKRGAN--------------DAPYNFDELGDV-DSIREIMWNHAGIVRDKSSLLEGLK 410
E R N + P N + + +R+ M G+ R++ + +GL+
Sbjct: 427 ELKHRSENPDDIDAAIARLKRWEKPNNVENPALLRQEMRKAMSEDFGVFREEQKMKQGLE 486
Query: 411 KLEGV-EADQRLKV----------------------VAKAVLTLALEREESRGSHYRRDF 447
+L+ + E QR K+ V+ A A +R ESRG+H R D+
Sbjct: 487 RLQKLNERLQRAKLTDTSRTFNNARIEALELDNLMEVSYATAVSAQQRTESRGAHSRYDY 546
>sp|Q94523|DHSA_DROME SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
COMPLEX II) >gi|1813955|emb|CAA70285.1| (Y09064)
succinate dehydrogenase flavoprotein subunit [Drosophila
melanogaster]
Length = 509
Score = 168 bits (422), Expect = 1e-40
Identities = 145/466 (31%), Positives = 229/466 (49%), Gaps = 62/466 (13%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA LV +G ++I S++ AQ GI L +E D + H+ D
Sbjct: 45 VVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYD 104
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
T++ ++ D++ + + ++ +A L ++G+ F+ G L+ GG
Sbjct: 105 TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQ 164
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
+H R + TG ++ L + N FV F ++ ++G+ GV +G L
Sbjct: 165 AH-RCCAVADRTGHSLLHTLYGQSLNYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTL 223
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F A V+ATGG+ + G +A +G+P +D+EFVQFHPTG G
Sbjct: 224 HRFRAKNTVLATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAG 283
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------- 267
LITE RG G L+ G+GERF+ +L +RDVV+R++ ++++EG+G
Sbjct: 284 C-LITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDH 342
Query: 268 VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRI 324
V+L + + +R P + + + G+D ++ IPV P HY MGG+ + YR ++
Sbjct: 343 VYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTN--YRGQV 400
Query: 325 ------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGA 372
GLYA GEAAS+ HGANRL +NSLL+ VV G A+TI E K GA
Sbjct: 401 ITIDKDGKDVIVPGLYAAGEAASSSVHGANRLGANSLLDLVVFGRACAKTI-AELNKPGA 459
Query: 373 NDAPYNFDELGDVDSIREIMWNHA-GIVRDKSSLLEGLKKLEGVEA 417
AP + G+ HA G++ L+ K ++ + A
Sbjct: 460 -PAPTLKENAGEASVANLDKLRHANGLITTADLRLKMQKTMQHLAA 504
>emb|CAB89075.1| (AL353872) putative succinate dehydrogenase flavoprotein subunit
[Streptomyces coelicolor A3(2)]
Length = 584
Score = 168 bits (421), Expect = 1e-40
Identities = 162/534 (30%), Positives = 233/534 (43%), Gaps = 96/534 (17%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHVLDT 65
IVG G AG+ AAI ++ + S++ AQ G+A L VE D+ H DT
Sbjct: 10 IVGAGGAGMRAAIESTKRSRTAVLTKLYPTRSHTGAAQGGMAAALANVEEDNWEWHTFDT 69
Query: 66 IRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHP------- 111
++ G Y+ D++ + ++ ++ L G+ F GGHS
Sbjct: 70 VKGGDYLVDQDAAEILAKEAIDSVLDLEKMGLPFNRTPDGTIDQRRFGGHSRNHGEAPVR 129
Query: 112 RVFTIKSETGKHVIPILEKHARELGVNFVRGF-------VEEIGIKN--GKLAGVFLNGE 162
R TG ++ L ++ + GV F F E G+K G +A GE
Sbjct: 130 RSCYAADRTGHMILQTLYQNCVKEGVEFFNEFYVLDQLITEVDGVKKSAGVVAYELATGE 189
Query: 163 LLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
+ F A V+ A+GG ++ T+ G + +G+PL DMEF QFHPTG I R
Sbjct: 190 IHVFQAKSVIYASGGTGKFFKVTSNAHTLTGDGQAAVYRRGLPLEDMEFFQFHPTG-IWR 248
Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------ 267
L+TE RG G L DGERF+ +L +RDVV+R+IY ++ EG+G
Sbjct: 249 MGILLTEGARGEGGILRNKDGERFMEKYAPVMKDLASRDVVSRSIYTEIREGRGCGPEGD 308
Query: 268 -VFLDARGI--EDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDIFYR-- 321
V+LD + E + P + + GI+P D IP+ P AHY MGGI ++
Sbjct: 309 HVYLDLTHLPPEQLDAKLPDITEFARTYLGIEPYTDPIPIQPTAHYAMGGIPTNVEGEVL 368
Query: 322 ----TRIRGLYAIGEAASNGFHGANRLASNSLLECVV----------------------- 354
T + GLYA GE A HGANRL +NSLL+ V
Sbjct: 369 ADNTTVVPGLYAAGEVACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAQKADFVELPE 428
Query: 355 ----------------SGLEVARTILRE-EPKRGANDAPYNFDEL--GDVDSIREIMWNH 395
+G E TI RE + AN + ++ V+ I E+ +
Sbjct: 429 DPETLVVEQIERLRSSTGTERVATIRRELQECMDANVMVFRTEQTIKTAVEKIAELRARY 488
Query: 396 AGI-VRDKSSLLEGLKKLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
+ ++DK LE VE L +A+ + AL R+ESRG HYR DFP
Sbjct: 489 KNVSIQDKGRRF-NTDLLEAVELGNLLD-LAEVMAVSALARKESRGGHYREDFP 540
>sp|P31038|DHSA_RICPR SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT >gi|538837|pir||JN0895
succinate dehydrogenase (EC 1.3.99.1) flavoprotein chain
sdhA - Rickettsia prowazekii >gi|152492|gb|AAA16097.1|
(M88696) succinate dehydrogenase [Rickettsia prowazekii]
>gi|409936|gb|AAA18327.1| (U02603) SdhA [Rickettsia
prowazekii] >gi|3860696|emb|CAA14597.1| (AJ235270)
SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (sdhA)
[Rickettsia prowazekii]
Length = 596
Score = 168 bits (420), Expect = 2e-40
Identities = 158/538 (29%), Positives = 244/538 (44%), Gaps = 95/538 (17%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
+V +VG G AGL +A + ++G++ + I S++ AQ GI+ L + D R H
Sbjct: 13 DVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDWRWH 72
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN---------------ELEG 106
+ DT++ ++ D++ + + + +A L +GV F+ E
Sbjct: 73 MYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTVDGKIYQRPFGGMTTEYGK 132
Query: 107 GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NG 161
G + R TG ++ L + + + V F + F ++ +++G+ GV +G
Sbjct: 133 GKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLMEDGECRGVVAWNLDDG 192
Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
L F A VV+ATGG+ Y G G + G+PL+DMEFVQFHPTG
Sbjct: 193 SLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMVIRAGLPLQDMEFVQFHPTGIYS 252
Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV---- 268
LITE RG G LV +GERF+ +L +RDVV+RA+ +++ EG+GV
Sbjct: 253 AGC-LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHK 311
Query: 269 -----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF--- 319
L+ E R P + K G+D KD IPV P HY MGGI +
Sbjct: 312 DHVFLHLNHLSPEILHRRLPGISETAKIFAGVDVTKDPIPVLPTVHYNMGGIPTNYQGQV 371
Query: 320 -------YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEP 368
+ + + G+ AIGEAA HGANRL SNSLL+ VV S L+ A I P
Sbjct: 372 IIKDGKNHNSIVNGIMAIGEAACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASP 431
Query: 369 -----KRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKL- 412
K FD++ + ++ M +H + R + L EG+ +
Sbjct: 432 HKPLQKETLEKIINRFDKVRYANGNILVADLRLKMQRTMQSHVSVFRTQKLLDEGVGMIS 491
Query: 413 --------------------EGVEADQRLKVVAKAVLTL--ALEREESRGSHYRRDFP 448
+ VEA + ++ +A++T+ A R+ESRG+H R D+P
Sbjct: 492 EIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVCSAAARKESRGAHAREDYP 549
>gb|AAC17942.1| (AF007569) succinate dehydrogenase flavoprotein subunit
[Bradyrhizobium japonicum]
Length = 611
Score = 167 bits (419), Expect = 2e-40
Identities = 155/537 (28%), Positives = 237/537 (43%), Gaps = 95/537 (17%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
+V +VG G AGL A + E G+ + I S++ AQ GI+ L + D R H
Sbjct: 28 DVVVVGAGGAGLRAVVGCSEAGLRTACITKVFPTRSHTVAAQGGISASLGNMHKDDWRWH 87
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHP---------- 111
+ DT++ ++ D++ + ++ + +A L GV F+ E + P
Sbjct: 88 MYDTVKGSDWLGDQDAIEYMVRNAPDAVYELEHWGVPFSRTEDGKIYQRPFGGMTLDFGK 147
Query: 112 ----RVFTIKSETGKHVIPILE----KHARELGVNF--VRGFVEEIGIKNGKLAGVFLNG 161
R TG ++ + +HA E + F + +++ G G +A +G
Sbjct: 148 GQAQRTCAAADRTGHAMLHTMYGQSLRHAAEFFIEFFAIDLIMDDQGTCRGVIALKLDDG 207
Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
L +F A V++ATGG+ Y G G + G+P++DMEFVQFHPTG G
Sbjct: 208 TLHRFRAQTVILATGGYGRAYASCTSAHTCTGDGGGMVLRAGLPMQDMEFVQFHPTGIYG 267
Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV---- 268
L+TE RG G LV +GERF+ +L +RDVV+RA+ +++ EG+GV
Sbjct: 268 SGC-LVTEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKK 326
Query: 269 -----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT 322
LD +R P + K +D ++ IP+ P HY MGGI +
Sbjct: 327 DHIFLHLDHLDPAVLAERLPGISESAKIFANVDVTREPIPIVPTVHYNMGGIPTNYHGEV 386
Query: 323 R----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR------E 366
I GL AIGEAA HGANRL SNSL++ VV G A + +
Sbjct: 387 LTKKDGDDNAVIPGLMAIGEAACVSVHGANRLGSNSLIDLVVFGRAAALRLAEKLTPNAK 446
Query: 367 EPKRGANDAPYNFDELGDV-------------DSIREIMWNHAGIVRDKSSLLEGLKKLE 413
+P+ AN A L + ++ +M ++ + R L EG +E
Sbjct: 447 QPELPANSAELALGRLDHYRYASGGTPTAKLREGMQHVMQSNCAVFRTGEVLSEGQNLIE 506
Query: 414 GVE--------ADQRL-------------KVVAKAVLTL--ALEREESRGSHYRRDF 447
V +D+ L ++A+AV+T+ A R ESRG+H R DF
Sbjct: 507 KVHSGITDIAVSDRSLVWNSDLVETLEFDNLIAQAVVTMNSAANRTESRGAHAREDF 563
>pir||T50081 probable succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)
flavoprotein chain precursor [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|6448607|emb|CAB61213.1|
(AL132984) probable succinate dehydrogenase flavoprotein
subunit precursor(ec 1.3.5.1) [Schizosaccharomyces
pombe]
Length = 641
Score = 167 bits (419), Expect = 2e-40
Identities = 161/538 (29%), Positives = 237/538 (43%), Gaps = 101/538 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL A L E G + + I S++ AQ GI L + D R H D
Sbjct: 59 VVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYD 118
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
T++ ++ D++ + + ++ +A L GV F+ G LE GG
Sbjct: 119 TVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQ 178
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NGEL 163
++ R + TG ++ L + + NF + F ++ ++ G+ GV +G +
Sbjct: 179 AY-RCAAVADRTGHSILHTLYGQSLKHNTNFFIEYFAMDLIMEGGECRGVIAMNLEDGSI 237
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F A ++ATGG+ Y G ++ G+PL+D+EFVQFHPTG G
Sbjct: 238 HRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGLPLQDLEFVQFHPTGIYGAG 297
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVF----- 269
LITE RG G L+ GERF+ +L +RDVV+RA+ +++ EG+GV
Sbjct: 298 C-LITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVGPEKDH 356
Query: 270 ----LDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGI---------S 315
L E K+R P + G+D K+ IPV P HY MGGI +
Sbjct: 357 CYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLT 416
Query: 316 VDIFYRTRI-RGLYAIGEAASNGFHGANRLASNSLLECVVSG----LEVARTILREEP-K 369
+D + +I GLYA GEAA HG NRL +NSLL+ VV G L + T+ P K
Sbjct: 417 IDENGKDKIVPGLYAAGEAACVSVHGGNRLGANSLLDIVVFGRACALHIKDTLEPNTPHK 476
Query: 370 RGANDAPYNFDELGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLKKLE 413
A DA D L +D IR + M + R + +L EG+K +
Sbjct: 477 PLAADA--GLDSLKFLDQIRTSQGPKHTSEIRLDMQKTMQRDVSVFRMEETLQEGVKNIA 534
Query: 414 GVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
V+ + L A AL R+ESRG+H R D+P
Sbjct: 535 RVDGTYKDIGIRDRGLIWNTDLVEALELRNLLTCAVQTANAALNRKESRGAHAREDYP 592
>sp|Q59661|DHSA_PARDE SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
>gi|11252561|pir||T46880 succinate dehydrogenase
flavoprotein chain [imported] - Paracoccus denitrificans
>gi|975318|gb|AAA75177.1| (U31902) succinate
dehydrogenase flavoprotein subunit [Paracoccus
denitrificans]
Length = 600
Score = 167 bits (419), Expect = 2e-40
Identities = 157/540 (29%), Positives = 239/540 (44%), Gaps = 95/540 (17%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ +V +VG G AGL A + + E+G+ + + S++ AQ GIA L + D+ +
Sbjct: 10 EYDVVVVGAGGAGLRATLGMAEQGLRTACVTKVFPTRSHTVAAQGGIAASLSNMGPDNWQ 69
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELEG 106
H+ DT++ ++ D + + + ++ +A L +GV F+ G+ E
Sbjct: 70 WHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTTEF 129
Query: 107 GHSHP--RVFTIKSETGKHVIPILEKHA-RELGVNFVRGFVEEIGIKNGKLAGVFL---- 159
G P R TG ++ L + +E F+ F ++ I +G GV
Sbjct: 130 GEGPPVQRTCAAADRTGHAILHTLYGQSLKEKAEFFIEYFALDLIITDGACTGVVCWKLD 189
Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
+G + F+A VV+ATGG+ Y G G +A G+PL+DMEFVQFHPTG
Sbjct: 190 DGTIHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMVARAGLPLQDMEFVQFHPTGI 249
Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-- 268
G LITE RG G L +GERF+ +L +RDVV+R I +++ EG+GV
Sbjct: 250 YGSGC-LITEGARGEGGYLTNSEGERFMERYAPTYKDLASRDVVSRCITIEIREGRGVGP 308
Query: 269 -----FLDARGI--EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
L+ + E +R P + K G+D ++ IP+ P HY MGGI + +
Sbjct: 309 HKDHMHLNLMHLPPESLAERLPGISESAKIFAGVDVTREPIPILPTVHYNMGGIPTNYWG 368
Query: 321 RTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSG----LEVARTILRE 366
GL A+GEA HGANRL SNSL++ VV G + + I RE
Sbjct: 369 EVLNPTQDNPDQVFPGLMAVGEAGCASVHGANRLGSNSLIDLVVFGRAAAIRAGQVIDRE 428
Query: 367 EP-----KRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKK 411
K + A FD + + D ++ M A + R +L EG+ K
Sbjct: 429 AQIPTTNKEQVDKALDRFDRIRNADGSVSTADLRLEMQRTMQADAAVFRTDKTLAEGVDK 488
Query: 412 LEGVEAD-QRLKVV----------------------AKAVLTLALEREESRGSHYRRDFP 448
+ + LKV A A + A R+ESRG+H D+P
Sbjct: 489 MRVIAGKLSDLKVTDRSLIWNSDLMETLELTNLMPNALATIVAAEARKESRGAHAHEDYP 548
>dbj|BAA31215.1| (AB015757) fumarate reductase flavoprotein subunit [Rhodoferax
fermentans]
Length = 601
Score = 166 bits (417), Expect = 4e-40
Identities = 156/541 (28%), Positives = 241/541 (43%), Gaps = 103/541 (19%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
+V IVG G +G+ A++ L G++V+++ S++ AQ GI L + D+ H
Sbjct: 13 DVVIVGAGGSGMSASLRLSNAGLNVAVLTKVFPTRSHTVAAQGGIGASLGNMAEDNWHYH 72
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSH---- 110
DTI+ ++ D++ + + + T+ L G+ F N GGH+
Sbjct: 73 FYDTIKGSDWLGDQDAIEFMCRERTQVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGE 132
Query: 111 ---PRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFL--- 159
R TG ++ L + + NF FVE + + G + GV
Sbjct: 133 KPVQRACAAADRTGHAMLHTLYQQNVKARTNF---FVEWMALDLIRDAEGDVVGVTALEM 189
Query: 160 -NGEL--LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
GE+ L+ +V++ATGG ++ + N G +G A G+PL+DMEF QFHPTG
Sbjct: 190 ETGEIHVLRAKSVLLATGGAGRIFAASTNAFINTGDGLGIAARAGIPLQDMEFWQFHPTG 249
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKG-- 267
G L+TE RG GA L GERF + +L RD V+R + ++ EG+G
Sbjct: 250 VAGAGV-LLTEGCRGEGAILRNSAGERFMERYAPTLKDLAPRDFVSRCMDQEIKEGRGCG 308
Query: 268 -----VFLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF 319
+ LD G E R P V+ + +D K+ IPV P HY MGGI +I+
Sbjct: 309 PNKNYINLDMTHLGAETIAKRLPSVFEIGHNFANVDITKESIPVVPTIHYQMGGIPTNIY 368
Query: 320 ----------YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTIL----- 364
+ ++GLYA+GE A HGANRL +NSLL+ VV G + I+
Sbjct: 369 GQVVTPDGSGSQKVVKGLYAVGECACVSVHGANRLGTNSLLDIVVFGRAAGKHIVQFNNE 428
Query: 365 ----REEPKRGANDAPYNFDELGDV----------DSIREIMWNHAGIVRDKSSLLEGLK 410
+ P+ GA+ + + L + D IR M HA + R ++S+ EG+
Sbjct: 429 SDTHKPVPENGADISLDRLNRLDNSTSGEYAQVVRDDIRNTMQTHASVFRTQASMDEGVI 488
Query: 411 K------------------------LEGVEADQRLKVVAKAVLTLALEREESRGSHYRRD 446
K +E +E D ++ A+A + A R E RG+H D
Sbjct: 489 KIAAMRERVKNITLADKSKIFNTARIEALEVDNMIE-AAQATMVSAAARRECRGAHTVLD 547
Query: 447 F 447
+
Sbjct: 548 Y 548
>pir||G82118 succinate dehydrogenase, flavoprotein chain VC2089 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656638|gb|AAF95235.1| (AE004283) succinate
dehydrogenase, flavoprotein subunit [Vibrio cholerae]
Length = 588
Score = 165 bits (413), Expect = 1e-39
Identities = 150/537 (27%), Positives = 237/537 (43%), Gaps = 98/537 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEG--DSIRIHVLD 64
++G G AG+ AA+ + E+G+ +++ S++ AQ GI L D + H+ D
Sbjct: 12 VIGAGGAGMRAALQISEQGLTCALLSKVFPTRSHTVSAQGGITVALGNSHKDDWQWHMYD 71
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE-GGHSH 110
T++ YI D+ + + E+ L G+ F+ G E GG
Sbjct: 72 TVKGSDYIGDQNAIEYMCKNGPESVIELERMGLPFSRFENGTIYQRPFGGQSKEFGGEQA 131
Query: 111 PRVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEEIGIKN------GKLAGVFLNGEL 163
R TG ++ L +++ + F + ++ +KN G A GE+
Sbjct: 132 ARTAAAADRTGHALLHTLYQQNVKHKTTIFSEWYALDL-VKNQDGAVLGCTAICMETGEI 190
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
F A V+ATGG +Y T N G +G GVP++DME QFHPTG G
Sbjct: 191 CYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMALRAGVPMQDMEMWQFHPTGIAGAG 250
Query: 222 TYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG------- 267
L+TE RG G L+ DGERF+ +L RDVVAR++ +++ EG+G
Sbjct: 251 V-LVTEGCRGEGGYLLNKDGERFMERYAPNAKDLAGRDVVARSMMIEIREGRGCDGPWGP 309
Query: 268 ---VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYR-- 321
+ LD G + + R P + + + +DP K+ IPV P HY MGG+ + +
Sbjct: 310 HIKLKLDHLGRDVLESRLPGICELSRTFAHVDPVKEPIPVIPTCHYMMGGVPTQVSGQAI 369
Query: 322 --------TRIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEPK 369
++GL+A GE AS HGANRL NSLL+ VV +GL + T+ +
Sbjct: 370 KQDSHGKDVEVQGLFACGEIASVSVHGANRLGGNSLLDLVVFGRATGLHLGETLRAQAEA 429
Query: 370 RGANDAPYNF---------DELGDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEG 414
R A + + G D ++ M N+ + R+ ++ EGL++L+
Sbjct: 430 RPATASDIEASLARTMRWENSKGGEDPVVIRKDLQRCMQNNFSVFREGKAMAEGLEELKV 489
Query: 415 VE--------ADQRLKVVAKAVLTLALE---------------REESRGSHYRRDFP 448
+ AD+ + + + L L+ R ESRG+H R D+P
Sbjct: 490 IRERLKNAHLADKSTEFNTQRIECLELDNLMETAFSTAVAANYRTESRGAHARFDYP 546
>gb|AAC72373.1| (AF095938) succinate dehydrogenase Fp subunit [Mus musculus]
Length = 532
Score = 164 bits (412), Expect = 1e-39
Identities = 154/536 (28%), Positives = 241/536 (44%), Gaps = 100/536 (18%)
Query: 16 LVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLDTIRAGKYI 72
L AA L E G + + + S++ AQ GI L +E D+ R H DT++ ++
Sbjct: 1 LRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWL 60
Query: 73 NDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL----------------EGGHSHPRVFTI 116
D++ + + ++ + L ++G+ F+ E +GG +H R +
Sbjct: 61 GDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAH-RCCCV 119
Query: 117 KSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGELLKFDA--V 169
TG ++ L + + FV F ++ ++NG+ GV +G + + A
Sbjct: 120 ADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRIRAKNT 179
Query: 170 VVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAV 229
V+ATGG+ Y + G + G+P +D+EFVQFHPTG G LITE
Sbjct: 180 VIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC-LITEGC 238
Query: 230 RGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-------VFLDARGI 275
RG G L+ GERF+ +L +RDVV+R++ L++ EG+G V+L +
Sbjct: 239 RGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHL 298
Query: 276 --EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIR------- 325
E R P + + + G+D K+ IPV P HY MGGI + Y+ ++
Sbjct: 299 PPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN--YKGQVLKHVNGQD 356
Query: 326 ----GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR------EEPKRGAN-- 373
GLYA GEAA HGANRL +NSLL+ VV G A +I + P AN
Sbjct: 357 QIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGDKVPSIKANAG 416
Query: 374 -DAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD---- 418
++ N D+L D ++++ M NHA + R S L EG +K+ + D
Sbjct: 417 EESVMNLDKLRFADGSIRTSELRLNMQKSMQNHAAVFRVGSVLQEGCEKISQLYGDLKHL 476
Query: 419 -------------------QRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFE 455
Q L + A + A R+ESRG+H R D+ E++
Sbjct: 477 KTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRVDEYD 532
>pir||C81388 succinate dehydrogenase (EC 1.3.99.1) flavoprotein Cj0437
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967911|emb|CAB74273.1| (AL139075) succinate
dehydrogenase flavoprotein subunit [Campylobacter
jejuni]
Length = 611
Score = 163 bits (409), Expect = 3e-39
Identities = 160/527 (30%), Positives = 237/527 (44%), Gaps = 84/527 (15%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSII-GPKSKDSNSY--LAQAGI--AFPLVEGDSIR 59
+V ++G G AGL AA ++ ++ +S++ K S + +A+ GI GDS +
Sbjct: 46 DVLVIGSGGAGLCAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGDSYK 105
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPR 112
+H DTI+ G Y+ D++ + +A + G F+ NE L GG S R
Sbjct: 106 LHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGGASKKR 165
Query: 113 VFTIKSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKNGKLAGVFL----NGELLKF- 166
+TG ++ A GV F+ + +IG+ +GK GV L +G +
Sbjct: 166 CNYSADKTGHILMHSCLDDAISSGVKFLMNHELLDIGVVDGKCEGVVLRDIQSGGIYPVL 225
Query: 167 -DAVVVATGGFSGL-YRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYL 224
A+V+ATGG++ + Y T+ G + G+ D E +QFHPTG T L
Sbjct: 226 CKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPTGVANGGT-L 284
Query: 225 ITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKG--------VFL 270
ITEA RG G L+ GERF+ EL RDVVARAI ++ EG+G V
Sbjct: 285 ITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGYGEGLGAYVLC 344
Query: 271 DAR--GIEDFKDRFPYV-YSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF--YRTRIR 325
D R G E P + ++ + E ID +P+ P AHY+MGGI V F T+I
Sbjct: 345 DVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIEVAKFEDMGTKIA 404
Query: 326 GLYAIGEAASNGFHGANRLASNSLLECVVSG--LEVARTILREEPKRG--------ANDA 375
G+Y GEA+ HGANRL NSL + VV+G + T ++ G A
Sbjct: 405 GIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDASFGKGAKTHELAQKW 464
Query: 376 PYNFDEL----GDVDSIREIM-------WNHAGIVRDKSSLLEGLKKLEGVEADQ----- 419
F E+ G+ + E+ W++ GI R + L KKLE ++A
Sbjct: 465 QVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLLAKKLEDIQARYEKIRI 524
Query: 420 ------------------RLKVVAKAVLTLALEREESRGSHYRRDFP 448
L ++++ A R ESRG+H R D+P
Sbjct: 525 PNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHTREDYP 571
>pir||E82728 succinate dehydrogenase, flavoprotein subunit XF1072 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106019|gb|AAF83882.1|AE003943_13 (AE003943)
succinate dehydrogenase, flavoprotein subunit [Xylella
fastidiosa]
Length = 596
Score = 163 bits (409), Expect = 3e-39
Identities = 160/537 (29%), Positives = 235/537 (42%), Gaps = 98/537 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVD-VSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL A L +KG+ V + S++ AQ GI+ L + D R H D
Sbjct: 15 VVGAGGAGLRATFGLAQKGLQTVCLTKVFPTRSHTVAAQGGISAALGNMGEDDWRYHFYD 74
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHP------------- 111
TI+ ++ D++ + + ++ A L +GV F+ + P
Sbjct: 75 TIKGSDWLGDQDAIEYMCREAIPAVIELEHYGVPFSRTAQGKIYQRPFGGMTTRYGEGPR 134
Query: 112 --RVFTIKSETGKHVIPILEKHARELGVNFVRGFV------EEIGIKNGKLAGVFLNGEL 163
R TG ++ L + A F+ + + G+ G LA G L
Sbjct: 135 AERTCAAADRTGHAMLHTLYQQALAHDARFMIEYFALDLIFDNEGVCCGVLALDMAEGSL 194
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
F A VV+ATGG+ Y G G + G+P++DMEFVQFHPTG G
Sbjct: 195 HLFRAHGVVLATGGYGRTYFSATSAHTCTGDGGGLVMRAGLPMQDMEFVQFHPTGIYGAG 254
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV------ 268
LITE VRG G L +GERF+ +L +RDVV+R++ +++ EG+GV
Sbjct: 255 C-LITEGVRGEGGILRNSNGERFMERYAPHYKDLASRDVVSRSMIIEIREGRGVGEHKDH 313
Query: 269 -FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRI 324
LD G +++ P + + G+D K IPV P HY MGGI + ++ +
Sbjct: 314 ILLDLTHLGPSMIQEKLPGIAESARIFAGVDVTKQPIPVLPTVHYNMGGIPTN-YHGEVV 372
Query: 325 R-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEV----ARTILREEPK 369
R GLYA+GEAA HGANRL SNSLL+ VV G V A TI +P
Sbjct: 373 RKIGNDPDAVVPGLYAVGEAACVSVHGANRLGSNSLLDLVVFGRAVANRCAETIKPNQPH 432
Query: 370 R-----GANDAPYNFDELGDVDS----------IREIMWNHAGIVRDKSSLLEGLKKL-- 412
+ + A D+L D ++ M + A + R +L EG +K+
Sbjct: 433 KVLPSDSCDKALGLLDKLRHADGSTPTAVIRDRMQRTMQSDASVFRTSKTLQEGCEKMNE 492
Query: 413 -----EGVEADQR----------------LKVVAKAVLTLALEREESRGSHYRRDFP 448
+ V+ R L + A A + A +R+ESRG+H D+P
Sbjct: 493 IFALFDDVKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHAHEDYP 549
>sp|Q10760|FRDA_MYCTU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|7431670|pir||E70762
probable frdA protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1403490|emb|CAA98311.1| (Z74020) frdA
[Mycobacterium tuberculosis]
Length = 583
Score = 163 bits (408), Expect = 4e-39
Identities = 152/538 (28%), Positives = 244/538 (45%), Gaps = 102/538 (18%)
Query: 8 IVGGGLAGLVAAISLVEKG--VDVSIIGPK-SKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
++GGG AGL AAI++ E +DV+I+ S++ A+ G A + DS+ H D
Sbjct: 9 VIGGGGAGLRAAIAIAETNPHLDVAIVSKVYPMRSHTVSAEGGAAAVTGDDDSLDEHAHD 68
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVFTIK 117
T+ G ++ D++ V ++++ + L G ++ GG R +
Sbjct: 69 TVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGGMKKLRTWFAA 128
Query: 118 SETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFL------NGELLKFDAV 169
+TG H++ L + + + F + + +G++ G+ E + DAV
Sbjct: 129 DKTGFHLLHTLFQRLLTYSDVMRYDEWFATTLLVDDGRVCGLVAIELATGRIETILADAV 188
Query: 170 VVATGGFSGLYRFT--AGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG--FIGRRTYLI 225
++ TGG ++ FT A +K G+ + A G PL+DMEFVQ+HPTG F G LI
Sbjct: 189 ILCTGGCGRVFPFTTNANIKTGDGMALAFRA--GAPLKDMEFVQYHPTGLPFTG---ILI 243
Query: 226 TEAVRGAGAKLVTGDGERFVN----------------ELETRDVVARAIYLKMLEGKGV- 268
TEA R G L+ DG R++ EL RD +++A + +G+ V
Sbjct: 244 TEAARAEGGWLLNKDGYRYLQDYDLGKPTPEPRLRSMELGPRDRLSQAFVHEHNKGRTVD 303
Query: 269 -------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
+LD R G + + P+V + + + IDP +L+PV PV HY MGG+ DI
Sbjct: 304 TPYGPVVYLDLRHLGADLIDAKLPFVRELCRDYQHIDPVVELVPVRPVVHYMMGGVHTDI 363
Query: 319 FYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTIL-----REEPKRGAN 373
T + GLYA GE A +GANRL SNSL E +V G R ++ RG +
Sbjct: 364 NGATTLPGLYAAGETACVSINGANRLGSNSLPELLVFGARAGRAAADYAARHQKSDRGPS 423
Query: 374 DA-------------------PYNFDELGDVDS-IREIMWNHAGIVRDKSSLLEGLKKLE 413
A + + D+ + ++ + + AGI RD +L + ++++
Sbjct: 424 SAVRAQARTEALRLERELSRHGQGGERIADIRADMQATLESAAGIYRDGPTLTKAVEEIR 483
Query: 414 ---------GVEADQR--------------LKVVAKAVLTLALEREESRGSHYRRDFP 448
G++ R + VA A++ L REESRG+H R DFP
Sbjct: 484 VLQERFATAGIDDHSRTFNTELTALLELSGMLDVALAIVESGLRREESRGAHQRTDFP 541
>pir||A42792 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
chain precursor, mitochondrial - bovine
Length = 665
Score = 163 bits (408), Expect = 4e-39
Identities = 154/550 (28%), Positives = 245/550 (44%), Gaps = 102/550 (18%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + +VG G AGL AA L E G + + + S++ AQ GI L +E D+ R
Sbjct: 62 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 121
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
H DT++ ++ D++ + + ++ + L ++G+ F+ E
Sbjct: 122 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 181
Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
+GG +H R + TG ++ L + + FV F ++ +++G+ GV
Sbjct: 182 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMESGECRGVIALCI 240
Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
+G + + A V+ATGG+ Y + G + G+P +D+EFVQFHPTG
Sbjct: 241 EDGSIHRIRARNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 300
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
G LITE RG G L+ GERF+ +L +RDVV+R++ L++ EG+G
Sbjct: 301 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCG 359
Query: 268 -----VFLDARGIE--DFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
V+L + R P + + + G+D K+ IPV P HY MGGI +
Sbjct: 360 PEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN-- 417
Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE-- 366
Y+ ++ GLYA GEAA HGANRL +NSLL+ VV G A +I
Sbjct: 418 YKGQVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR 477
Query: 367 --------EPKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEG 408
+P G ++ N D+L + ++++ M +HA + R S L EG
Sbjct: 478 PGDKVPSIKPNAG-EESVMNLDKLRFANGSIRTSELRLNMQKSMQSHAAVFRVGSVLQEG 536
Query: 409 LKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRR 445
+K+ + D Q L + A + A R+ESRG R
Sbjct: 537 CEKISSLYGDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGPRRE 596
Query: 446 DFPFMRKEFE 455
DF E++
Sbjct: 597 DFKERVDEYD 606
>sp|P10444|DHSA_ECOLI SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
>gi|7427736|pir||DEECSF succinate dehydrogenase (EC
1.3.99.1) flavoprotein - Escherichia coli
>gi|1651319|dbj|BAA35390.1| (D90711) Succinate
dehydrogenase (EC 1.3.99.1) flavoprotein [Escherichia
coli] >gi|1786942|gb|AAC73817.1| (AE000175) succinate
dehydrogenase, flavoprotein subunit [Escherichia coli
K12]
Length = 588
Score = 163 bits (408), Expect = 4e-39
Identities = 154/543 (28%), Positives = 240/543 (43%), Gaps = 100/543 (18%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + ++G G AG+ AA+ + + G +++ S++ AQ GI L D+
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWE 66
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT------------GNELE-- 105
H+ DT++ YI D++ + + EA L G+ F+ G + +
Sbjct: 67 WHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNF 126
Query: 106 GGHSHPRVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEEIGIKN------GKLAGVF 158
GG R TG ++ L +++ + F + ++ +KN G A
Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDL-VKNQDGAVVGCTALCI 185
Query: 159 LNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
GE++ F A V+ATGG +Y+ T N G +G GVP++DME QFHPTG
Sbjct: 186 ETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTG 245
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG-- 267
G L+TE RG G L+ GERF+ +L RDVVAR+I +++ EG+G
Sbjct: 246 IAGAGV-LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304
Query: 268 --------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
+ LD G E + R P + + + +DP K+ IPV P HY MGGI +
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364
Query: 319 FYRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTIL 364
+ + GL+A+GE A HGANRL NSLL+ VV +GL + +I
Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA 424
Query: 365 REEPKRGA--NDAPYNFDELGDVD-------------SIREIMWNHAGIVRDKSSLLEGL 409
+ R A +D + D L + +++E M ++ + R+ ++ +GL
Sbjct: 425 EQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGL 484
Query: 410 KKL------------------------EGVEADQRLKVVAKAVLTLALEREESRGSHYRR 445
++L E +E D L A A A R ESRG+H R
Sbjct: 485 EQLKVIRERLKNARLDDTSSEFNTQRVECLELD-NLMETAYATAVSANFRTESRGAHSRF 543
Query: 446 DFP 448
DFP
Sbjct: 544 DFP 546
>emb|CAA25487.1| (X00980) succinate dehydrogenase (sdhA) flavoprotein subunit (aa
1-587) [Escherichia coli] >gi|146199|gb|AAA23895.1|
(J01619) succinate dehydrogenase large subunit
[Escherichia coli]
Length = 588
Score = 162 bits (406), Expect = 7e-39
Identities = 153/543 (28%), Positives = 239/543 (43%), Gaps = 100/543 (18%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + ++G G AG+ A+ + + G +++ S++ AQ GI L D+
Sbjct: 7 EFDAVVIGAGGAGIARALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWE 66
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT------------GNELE-- 105
H+ DT++ YI D++ + + EA L G+ F+ G + +
Sbjct: 67 WHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNF 126
Query: 106 GGHSHPRVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEEIGIKN------GKLAGVF 158
GG R TG ++ L +++ + F + ++ +KN G A
Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDL-VKNQDGAVVGCTALCI 185
Query: 159 LNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
GE++ F A V+ATGG +Y+ T N G +G GVP++DME QFHPTG
Sbjct: 186 ETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTG 245
Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG-- 267
G L+TE RG G L+ GERF+ +L RDVVAR+I +++ EG+G
Sbjct: 246 IAGAGV-LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304
Query: 268 --------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
+ LD G E + R P + + + +DP K+ IPV P HY MGGI +
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364
Query: 319 FYRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTIL 364
+ + GL+A+GE A HGANRL NSLL+ VV +GL + +I
Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA 424
Query: 365 REEPKRGA--NDAPYNFDELGDVD-------------SIREIMWNHAGIVRDKSSLLEGL 409
+ R A +D + D L + +++E M ++ + R+ ++ +GL
Sbjct: 425 EQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGL 484
Query: 410 KKL------------------------EGVEADQRLKVVAKAVLTLALEREESRGSHYRR 445
++L E +E D L A A A R ESRG+H R
Sbjct: 485 EQLKVIRERLKNARLDDTSSEFNTQRVECLELD-NLMETAYATAVSANFRTESRGAHSRF 543
Query: 446 DFP 448
DFP
Sbjct: 544 DFP 546
>dbj|BAA13119.1| (D86573) flavoprotein subunit of succinate dehydrogenase
[Plasmodium falciparum]
Length = 620
Score = 161 bits (402), Expect = 2e-38
Identities = 164/550 (29%), Positives = 247/550 (44%), Gaps = 116/550 (21%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
IVG G AGL +A+ L + V+ I S++ AQ GI L + D R H D
Sbjct: 27 IVGAGGAGLRSALELSKNKYKVACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYD 86
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
TI+ ++ D+ + + ++ ++ L G+ F+ G L+ GG
Sbjct: 87 TIKGSDWLGDQNAIHYMCREAPDSVLELEEFGLPFSRTKDGKIYQRAFGGQSLKYGKGGQ 146
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN---FVRGFVEEIGIKN-----GKLAGVFLN 160
++ R TG ++ L + + L N FV FV ++ + N G + +
Sbjct: 147 AY-RCAAAADRTGHAMLHTL--YGQSLSYNCIFFVEYFVLDLLMLNSNECIGVICINIAD 203
Query: 161 GELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI 218
G++ +F V+ATGG+ Y G +A +PL+D+EFVQFHPTG I
Sbjct: 204 GKIHRFFTPHTVIATGGYGRAYLSCTSAHACTGDGNAIVARSKLPLQDLEFVQFHPTG-I 262
Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG---- 267
LITE RG G L +GE F+ +L +RDVV+RA+ +++ E +G
Sbjct: 263 YPAGCLITEGCRGEGGILRNKEGEAFMMRYAPKAKDLASRDVVSRAMTIEINEQRGCGPN 322
Query: 268 ---VFLDARGI--EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYR 321
++LD + E K+R P + K G+D K IPV P HY MGGI + Y+
Sbjct: 323 ADHIYLDLTHLPYETLKERLPGIMETAKIFAGVDVTKQYIPVLPTVHYNMGGIPTN--YK 380
Query: 322 TRI--------------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVAR 361
T++ +GLYA GEAAS HGANRL +NSLL+ VV G A
Sbjct: 381 TQVLTQNVNFNKQTNKSNEDIIVKGLYAAGEAASASVHGANRLGANSLLDIVVFGKRAAL 440
Query: 362 TILREE----PKRGAN-----DAPYNFDEL----GDVDS------IREIMWNHAGIVRDK 402
TI+ + PK AN ++ D + G + + ++ M HA + R
Sbjct: 441 TIMEIDKPNIPKINANTNIGEESIQRLDHIRFNKGSIQTSQLRKKMQICMQKHAAVFRIG 500
Query: 403 SSLLEGLKK------------------------LEGVEADQRLKVVAKAVLTLALEREES 438
L EG K+ LE +E + L + ++ +L A+ER+ES
Sbjct: 501 PLLQEGYKQILEICSIFKDIEITDKTLTWNTDLLETLELENLLTLASQTILA-AVERKES 559
Query: 439 RGSHYRRDFP 448
RG+H R DFP
Sbjct: 560 RGAHARDDFP 569
>gi|6322416 Yjl045wp [Saccharomyces cerevisiae]
>gi|1352266|sp|P47052|DHSX_YEAST PROBABLE SUCCINATE
DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT 2,
MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
COMPLEX II) >gi|1078399|pir||S56817 probable succinate
dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
precursor YJL045w, mitochondrial - yeast (Saccharomyces
cerevisiae) >gi|1008175|emb|CAA89336.1| (Z49320) ORF
YJL045w [Saccharomyces cerevisiae]
Length = 634
Score = 158 bits (395), Expect = 1e-37
Identities = 151/536 (28%), Positives = 237/536 (44%), Gaps = 98/536 (18%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AA L E G + + S++ AQ GI L + D + H+ D
Sbjct: 51 VVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDWKSHMYD 110
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL----------------EGGH 108
T++ ++ D++ + + ++ ++ L +G+ F+ E +GG
Sbjct: 111 TVKGSDWLGDQDAIHYMTREAPKSVIELEHYGMPFSRTEDGRIYQRAFGGQSKDFGKGGQ 170
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NGEL 163
++ R + TG ++ L A + +F + F ++ NG++ GV +G +
Sbjct: 171 AY-RTCAVADRTGHAMLHTLYGQALKNNTHFFIEYFAMDLLTHNGEVVGVIAYNQEDGTI 229
Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
+F A V+ATGG+ Y G ++ G PL D+EFVQFHP+G G
Sbjct: 230 HRFRAHKTVIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLEDLEFVQFHPSGIYGSG 289
Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARG 274
LITE RG G L+ +GERF+ +L +RDVV+RAI +++ G+GV +
Sbjct: 290 C-LITEGARGEGGFLLNSEGERFMERYAPTAKDLASRDVVSRAITMEIRAGRGVGKNKDH 348
Query: 275 I---------EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGI-------SVD 317
I E K+R P + G+D ++ IPV P HY MGGI ++
Sbjct: 349 ILLQLSHLPPEVLKERLPGISETAAVFAGVDVTQEPIPVLPTVHYNMGGIPTKWTGEALT 408
Query: 318 IFYRTR----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTI-------LRE 366
I T I GL A GEAA HGANRL +NSLL+ VV G VA TI L
Sbjct: 409 IDEETGEDKVIPGLMACGEAACVSVHGANRLGANSLLDLVVFGRAVANTIADTLQPGLPH 468
Query: 367 EPKRG--ANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEG 414
+P +++ N D++ + +++ M + R + +L EG++ +
Sbjct: 469 KPLASNIGHESIANLDKVRNARGSLKTSQIRLNMQRTMQKDVSVFRTQDTLDEGVRNITE 528
Query: 415 VEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDF 447
V+ Q L A A +R+ESRG+H R D+
Sbjct: 529 VDKTFEDVHVSDKSMIWNSDLVETLELQNLLTCATQTAVSASKRKESRGAHAREDY 584
>pir||T51815 succinate dehydrogenase (EC 1.3.99.1) flavoprotein alpha chain
[imported] - Arabidopsis thaliana
>gi|3660471|emb|CAA05025.1| (AJ001809) succinate
dehydrogenase flavoprotein alpha subunit [Arabidopsis
thaliana] >gi|8843734|dbj|BAA97282.1| (AB018119)
succinate dehydrogenase flavoprotein alpha subunit
[Arabidopsis thaliana]
Length = 634
Score = 158 bits (395), Expect = 1e-37
Identities = 159/540 (29%), Positives = 234/540 (42%), Gaps = 106/540 (19%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AAI L E G + + I S++ AQ GI L + D R H+ D
Sbjct: 54 VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYD 113
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL----------------EGGH 108
T++ ++ D++ + + ++ +A L ++G+ F+ E +GG
Sbjct: 114 TVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQ 173
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGI-----KNGKLAGVFL---- 159
++ R TG ++ L A + F FVE + +G GV
Sbjct: 174 AY-RCACAADRTGHALLHTLYGQAMKHNTQF---FVEYFALDLLMASDGSCQGVIALNME 229
Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
+G L +F + ++ATGG+ Y G +A G+PL+D+EFVQFHPTG
Sbjct: 230 DGTLHRFRSSQTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGI 289
Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-- 268
G LITE RG G L +GERF+ +L +RDVV+R++ +++ EG+GV
Sbjct: 290 YGAGC-LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGP 348
Query: 269 -------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
L+ E K+R P + G+D K+ IPV P HY MGGI +
Sbjct: 349 HKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHG 408
Query: 321 RTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKR 370
I GL A GEAA HGANRL +NSLL+ VV G A + E K
Sbjct: 409 EVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRV-AEISKP 467
Query: 371 GANDAPYNFD----ELGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLK 410
G P D + +D +R IM N+A + R + +L EG +
Sbjct: 468 GEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVFRTQETLEEGCQ 527
Query: 411 KLE-------GVEADQR----------------LKVVAKAVLTLALEREESRGSHYRRDF 447
++ V+ R L + A + A R+ESRG+H R DF
Sbjct: 528 LIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDF 587
>emb|CAA54872.1| (X77919) putative succinate dehydrogenase large subunit [Coxiella
burnetii]
Length = 532
Score = 157 bits (394), Expect = 2e-37
Identities = 141/481 (29%), Positives = 214/481 (44%), Gaps = 98/481 (20%)
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTG-------NELEGGHSHP-- 111
H+ DT++ Y+ D++ + + ++ + L +G+ F+ GGH+
Sbjct: 15 HMFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFG 74
Query: 112 -----RVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFL-- 159
R TG ++ L + E G +F + E GI G +AG+
Sbjct: 75 KEMARRTCACADRTGHAMLHTLYQKNVEAGTHF---YYEWYGIDLVRGAQGGIAGMIAMN 131
Query: 160 --NGELLKFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
EL+ F A + ATGG +Y T+ N G IG + G+P++DMEF QFHPT
Sbjct: 132 METSELVFFKSRATIFATGGAGRIYETTSNAYTNTGDGIGMVLRAGLPVQDMEFWQFHPT 191
Query: 216 GFIGRRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGV 268
G G LITE RG G L+ DGERF + +L+ RDVVAR+I +++ G GV
Sbjct: 192 GIYGVGC-LITEGARGEGGYLINKDGERFMERYSPHLKDLDCRDVVARSILQEVMAGGGV 250
Query: 269 ---------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
LD G + ++R P + + +K +D K+ IP+ P HY MGGI +I
Sbjct: 251 GPKKDHVLLKLDHLGEKVLRERLPGIIELSEKFANVDITKEPIPILPTCHYMMGGIPTNI 310
Query: 319 FYRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTIL 364
+ I GL+A GE A HGANRL +NSLL+ VV GL + +
Sbjct: 311 HGQALTVDENGKDQIIEGLFAAGECACVSVHGANRLGTNSLLDLVVFGRAIGLHLEEALK 370
Query: 365 REEPKRGAN--------------DAPYNFDELGDV-DSIREIMWNHAGIVRDKSSLLEGL 409
E R N + P N + + +R+ M G+ R++ + +GL
Sbjct: 371 TELKHRSENPDDIDAAIARLKRWEKPNNVENPALLRQEMRKAMSEDFGVFREEQKMKQGL 430
Query: 410 KKLEGV-EADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
++L+ + E QR K+ V+ A A +R ESRG+H R D
Sbjct: 431 ERLQKLNERLQRAKLTDTSRTFNNARIEALELDNLMEVSYATAVSAQQRTESRGAHSRYD 490
Query: 447 F 447
+
Sbjct: 491 Y 491
>gb|AAC72374.1| (AF095939) succinate dehydrogenase Fp subunit [Gallus gallus]
Length = 499
Score = 157 bits (392), Expect = 3e-37
Identities = 135/437 (30%), Positives = 201/437 (45%), Gaps = 84/437 (19%)
Query: 99 FTGNELE---GGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKL 154
F G L+ GG +H R + TG ++ L + + FV F ++ ++NG+
Sbjct: 8 FGGQSLQFGKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGEC 66
Query: 155 AGVFL----NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDME 208
GV +G + +F A V+ATGG+ Y + G + G+P +D+E
Sbjct: 67 RGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLE 126
Query: 209 FVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLK 261
FVQFHPTG G LITE RG G L+ GERF+ +L +RDVV+R++ ++
Sbjct: 127 FVQFHPTGIYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIE 185
Query: 262 MLEGKG-------VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTM 311
+ EG+G V+L + + R P + + + G+D K+ IPV P HY M
Sbjct: 186 IREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNM 245
Query: 312 GGISVDIFYRTRI-----------RGLYAIGEAASNGFHGANRLASNSLLECVVSG---- 356
GGI + Y+ ++ GLYA GEAAS HGANRL +NSLL+ VV G
Sbjct: 246 GGIPTN--YKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACA 303
Query: 357 LEVARTILREEP-----KRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRD 401
L +A T EP ++ N D+L D ++++ M +HA + R
Sbjct: 304 LTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRT 363
Query: 402 KSSLLEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREES 438
S L EG +KL + D Q L + A + A R+ES
Sbjct: 364 GSILQEGCEKLSQIYCDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKES 423
Query: 439 RGSHYRRDFPFMRKEFE 455
RG+H R D+ F +F+
Sbjct: 424 RGAHAREDYKFRIDDFD 440
>gb|AAD15493.1| (AC006439) putative succinate dehydrogenase flavoprotein subunit
[Arabidopsis thaliana]
Length = 632
Score = 156 bits (390), Expect = 6e-37
Identities = 156/540 (28%), Positives = 238/540 (43%), Gaps = 106/540 (19%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
+VG G AGL AAI L E G + + I S++ AQ GI L + D R H+ D
Sbjct: 52 VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYD 111
Query: 65 TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
T++ ++ D++ + + ++ +A L ++G+ F+ G LE GG
Sbjct: 112 TVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQ 171
Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGI-----KNGKLAGVFL---- 159
++ R TG ++ L A + F FVE + +G GV
Sbjct: 172 AY-RCACAADRTGHALLHTLYGQAMKHNTQF---FVEYFALDLIMNSDGTCQGVIALNME 227
Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
+G L +F A ++ATGG+ Y G +A G+PL+D+EFVQFHPTG
Sbjct: 228 DGTLHRFHAGSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGI 287
Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG--- 267
G LITE RG G L +GE+F++ +L +RDVV+R++ +++ +G+G
Sbjct: 288 YGAGC-LITEGARGEGGILRNSEGEKFMDRYAPTARDLASRDVVSRSMTMEIRQGRGAGP 346
Query: 268 ------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
++L+ E K+R P + G+D ++ IPV P HY MGGI +
Sbjct: 347 MKDYLYLYLNHLPPEVLKERLPGISETAAIFAGVDVTREPIPVLPTVHYNMGGIPTNYHG 406
Query: 321 RTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKR 370
+ GL A GEAA HGANRL +NSLL+ VV G A + E K
Sbjct: 407 EVITLRGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRV-AEIQKP 465
Query: 371 GANDAPYNFD----ELGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLK 410
G P D + +D IR +M N+A + R + +L EG
Sbjct: 466 GEKLKPLEKDAGEKSIEWLDRIRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCD 525
Query: 411 KLEG---------------------VEADQRLKVVAKAVLTL--ALEREESRGSHYRRDF 447
++ +E + ++ A +T+ A R+ESRG+H R DF
Sbjct: 526 LIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDF 585
>pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes >gi|6730467|pdb|1QLA|D Chain D,
Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes >gi|6730470|pdb|1QLB|A Chain A,
Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes >gi|6730473|pdb|1QLB|D Chain D,
Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 151 bits (378), Expect = 1e-35
Identities = 156/547 (28%), Positives = 246/547 (44%), Gaps = 109/547 (19%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGP-KSKDSNSYLAQAGIAFPL-----VEGDSIRIH 61
++GGGLAGL AA++ +KG+ ++ K S+S AQ G+ L +GD+ +H
Sbjct: 10 VIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLH 69
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGV-------------------TFTGN 102
+DT++ + D++V ++ + +A L + GV T T
Sbjct: 70 FMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEE 129
Query: 103 ELEGGHSHPRVFT---------IKSETGKHVIPILEKHARELGVNFVRGFVEEIGI--KN 151
+ G H R F TG ++ + +LGV+ ++ E I + ++
Sbjct: 130 DFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVS-IQDRKEAIALIHQD 188
Query: 152 GKLAGV----FLNGELLKFDA--VVVATGGFSGLYRFT--AGVKENIGLLIGDLALKGVP 203
GK G + G+++ + A ++ATGG+ +Y+ T A V E G I L
Sbjct: 189 GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA-LETGIAQ 247
Query: 204 LRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVAR 256
L +ME VQFHPT L+TE RG G L DG RF+ EL +RDVV+R
Sbjct: 248 LGNMEAVQFHPTPLFPSGI-LLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSR 306
Query: 257 AIYLKMLEGKGV--------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTP 305
+ + +GKGV +LD G + + V + + GIDP + PV P
Sbjct: 307 RMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLP 366
Query: 306 VAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEV------ 359
+ HY+MGGI D +++GL++ GEAA HG NRL NS+ E VV+G+ V
Sbjct: 367 MQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE 426
Query: 360 --ARTILREEPK-------------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSS 404
A T + E K + ++ D + ++++M ++ GI RD
Sbjct: 427 HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPH 486
Query: 405 LLEGLKKLEGV------------------EADQRLKV-----VAKAVLTLALEREESRGS 441
L + +K+LE + E ++ +V VA V AL+R ESRG+
Sbjct: 487 LEKSVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGA 546
Query: 442 HYRRDFP 448
H R D+P
Sbjct: 547 HNREDYP 553
>emb|CAA74087.1| (Y13760) putative flavoprotein subunit [Shewanella frigidimarina]
Length = 588
Score = 150 bits (376), Expect = 2e-35
Identities = 151/550 (27%), Positives = 229/550 (41%), Gaps = 116/550 (21%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ +V ++G G AG+ AA+ + ++G +++ S++ AQ GI L D
Sbjct: 7 EFDVIVIGAGGAGMRAALQISKEGKSCALLSKVFPTRSHTVSAQGGITVALGNAHEDHWE 66
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT------------GNELE-- 105
H+ DT++ +I D+E + + EA L G+ F+ G +
Sbjct: 67 QHMYDTVKGSDFIGDQEAIEFMCQTGPEAIIELEQMGLPFSRFEDGTIYQRPFGGQSRNF 126
Query: 106 GGHSHPRVFTIKSETGKHVIPILE----KHAREL-----GVNFVRGFVEEIGIKNGKLAG 156
GG R TG ++ L KH ++ ++ V+ E + G A
Sbjct: 127 GGEQAARTAAAADRTGHALLHCLYQQNVKHKTDVYSEWYALDLVKN---EDDVVVGCTAI 183
Query: 157 VFLNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHP 214
GE++ F A ++ATGG +Y T N G +G A GV L+DME QFHP
Sbjct: 184 EIETGEIVYFKAKATILATGGAGRIYASTTNAHINTGDGVGMAARAGVQLQDMEMWQFHP 243
Query: 215 TGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG 267
TG G L+TE RG G L+ DGERF+ +L +RDVVAR++ ++ EG+G
Sbjct: 244 TGIAGAGV-LVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIREGRG 302
Query: 268 ----------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
+ LD G E + R P V + + IDP IPV P HY MGG+
Sbjct: 303 LDGPLGPHCLLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVLPTCHYMMGGLPT 362
Query: 317 DIFYRT----------RIRGLYAIGEAASNGFHGANRLASNSLLECVVSG---------- 356
+ + + GL+A+GE A HGANRL NSLL+ VV G
Sbjct: 363 KVSGQVIRMNDDGTEQDVLGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHLGKA 422
Query: 357 ------------LEVARTILR----EEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVR 400
+E++ ++ R E K G A D ++ M + + R
Sbjct: 423 LDATPDPKAASDVEISASLARLNRWESNKDGEEPAVIRKD-------LQLCMQLNFSVFR 475
Query: 401 DKSSLLEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREE 437
++ EGL++L+ ++ L A A A R E
Sbjct: 476 SGDAMAEGLEQLQAIQKRLENAKLSDNSTEFNTQRIECLELDNLMATALATAYAANFRTE 535
Query: 438 SRGSHYRRDF 447
SRG+H R D+
Sbjct: 536 SRGAHSREDY 545
>sp|Q59767|NADB_RHORU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
>gi|11356364|pir||T51327 L-aspartate oxidase (EC
1.4.3.16) [imported] - Rhodospirillum rubrum (fragment)
>gi|1498754|gb|AAC45129.1| (U65510) L-aspartate oxidase
[Rhodospirillum rubrum]
Length = 277
Score = 150 bits (374), Expect = 4e-35
Identities = 92/235 (39%), Positives = 119/235 (50%), Gaps = 22/235 (9%)
Query: 236 LVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDARGI--EDFKDRFPYVYS 287
LV G RF+ EL RDVV R + + GKG FLDAR F FP VY+
Sbjct: 2 LVDAQGRRFMTALDPAAELAPRDVVTRGVAAAIKAGKGAFLDARTALGAAFPQAFPTVYA 61
Query: 288 VLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASN 347
+ GIDP + IP+ P AHY MGG+ D F RT I GL+A+GE A G HGANRLASN
Sbjct: 62 ACRASGIDPVRQPIPIAPAAHYHMGGVLTDSFGRTSIDGLWAVGEVACTGAHGANRLASN 121
Query: 348 SLLECVVSGLEVARTILREEPKRG--------ANDAPYNFDELGDVDSIREIMWNHAGIV 399
SLLE VV VA + +RG + P ++ + +R M G++
Sbjct: 122 SLLEAVVFAARVAGDVGAAPLRRGWPPPAPPDLSPRPPPAEDAAAITRLRATMSARVGVI 181
Query: 400 RDKSSLLEGLKKLEGVEADQR------LKVVAKAVLTLALEREESRGSHYRRDFP 448
RD L L +E + A R + A+ + AL R ESRG+H+R D+P
Sbjct: 182 RDGQGLESALATIETIAAGARSPRLRAMTTAARLITAAALARRESRGAHFRADYP 236
>pir||C72035 succinate dehydrogenase, flavoprotein chain CP1083 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4377099|gb|AAD18927.1| (AE001660) Succinate
Dehydrogenase [Chlamydophila pneumoniae CWL029]
>gi|7189997|gb|AAF38855.1| (AE002264) succinate
dehydrogenase, flavoprotein subunit [Chlamydophila
pneumoniae AR39] >gi|8979162|dbj|BAA98997.1| (AP002547)
succinate dehydrogenase [Chlamydophila pneumoniae J138]
Length = 626
Score = 148 bits (369), Expect = 2e-34
Identities = 163/564 (28%), Positives = 241/564 (41%), Gaps = 123/564 (21%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPL----VEGDSIR 59
+V +VGGGLAGL AA+ L G+ V ++ K K S+S AQ GI L E DS
Sbjct: 6 KVIVVGGGLAGLSAAMQLANLGIIVELVSLTKVKRSHSVCAQGGINAALNLKPEEEDSPY 65
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF----TGN---ELEGGHSHPR 112
+H DTI+ G ++ D+ V + + L + G F +GN GG + R
Sbjct: 66 VHAYDTIKGGDFLADQPPVLEMCLAAPRIIKMLDNFGCPFNRGPSGNLDVRRFGGTLYHR 125
Query: 113 VFTIKSETGKHVIPILEK------HARELGVNFVRGFVEEIGIKNGKLAGVFLNG----- 161
+ TG+ ++ L++ HA + FV + +G+ G+ L
Sbjct: 126 TVFCGASTGQQLMYTLDEQVRRREHAGRVIKRENHEFVRLVTDHSGRACGIILMNLFNNR 185
Query: 162 -ELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
E+L+ DAV++ATGG +++ + G G L L+G+ + EF+Q HPT GR
Sbjct: 186 LEILRGDAVIIATGGPGVIFKMSTNSTFCTGAANGRLFLQGMAYANPEFIQIHPTAIPGR 245
Query: 221 -RTYLITEAVRGAGAKL-VTGDGERFV---------------------------NELETR 251
+ LI+E+VRG G ++ V GD + + L +R
Sbjct: 246 DKLRLISESVRGEGGRVWVPGDSSKRIVFPDGSERPCGETGAPWYFLEDMYPAYGNLVSR 305
Query: 252 DVVARAIYLKMLEGKGV------FLDARGI-EDFKDRFPYVYSVLKK-EGIDPGKDLIPV 303
DV ARAI G G+ +LD + E + + V + KK G DP + +
Sbjct: 306 DVGARAILRVCEAGLGIDGRMEAYLDVTHLPEKTRHKLEVVLDIYKKFTGEDPNTVPMRI 365
Query: 304 TPVAHYTMGGISVD------------IFYRTRIRGLYAIGEAASNGFHGANRLASNSLLE 351
P HY+MGG VD T I G + GE+ +HGANRL +NSLL
Sbjct: 366 FPAVHYSMGGAWVDWPAADDPDRDSRFRQMTNIPGCFNCGESDFQ-YHGANRLGANSLLS 424
Query: 352 C----VVSGLEVARTI----------------LREEPKRGANDAPYNFDELGDV--DSIR 389
C +VSG E +R I L++E + A + E V + I
Sbjct: 425 CLFAGLVSGDEASRFIEAFGASQATSSDFDRALQQEKEENARLLSASGKENIFVLHEEIA 484
Query: 390 EIMWNHAGIVRDKSSLLEGLKKLEGVEADQRLKVV------------------------- 424
+IM + + R+ L E + KL+ E +RLK V
Sbjct: 485 KIMVRNVTVKRNNRDLQETMDKLK--EFRERLKNVSVLDSSPFANKSFHFVRQMGPMLEL 542
Query: 425 AKAVLTLALEREESRGSHYRRDFP 448
A A+ AL R E RGSHY+ +FP
Sbjct: 543 ALAITKGALLRNEFRGSHYKPEFP 566
>pir||B81655 succinate dehydrogenase, flavoprotein chain TC0881 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190909|gb|AAF39677.1| (AE002354) succinate
dehydrogenase, flavoprotein subunit [Chlamydia
muridarum]
Length = 625
Score = 147 bits (368), Expect = 2e-34
Identities = 162/566 (28%), Positives = 242/566 (42%), Gaps = 134/566 (23%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGDSIRIHVL 63
I+GGGLAGL AA+ L ++G+ V + K K S+S AQ GI L E DS IH
Sbjct: 9 IIGGGLAGLSAAMQLADRGMLVELFSLTKVKRSHSVCAQGGINAALNLKDENDSPYIHAY 68
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT----GN---ELEGGHSHPRVFTI 116
DTI+ G ++ D+ V + + L G F GN GG + R
Sbjct: 69 DTIKGGDFLADQPPVLEMCLTAPRIIHMLDRFGCPFNRDAQGNLDVRRFGGTLYYRTVFC 128
Query: 117 KSETGKHVIPILEKHAR--ELGVNFVRG----FVEEIGIKNGKLAGVFLNG------ELL 164
+ TG+ ++ +++ R E ++ FV I + G+ GV + E++
Sbjct: 129 GASTGQQLMYTMDEQVRRRECQGKIIKRENHEFVRLITNEEGRACGVVVMNLFNNRLEVV 188
Query: 165 KFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG-RRTY 223
+ DAV++ATGG +++ + G G L ++G+ + EF+Q HPT G +
Sbjct: 189 QGDAVIIATGGLGVIFKMSTNSTICTGAANGRLFMQGMHYANPEFIQIHPTAIPGIDKLR 248
Query: 224 LITEAVRGAGAK----------LVTGDGER-----------FVNE-------LETRDVVA 255
LI+E+VRG G + ++ DG R F+ E L +RDV A
Sbjct: 249 LISESVRGEGGRVWVPGCSSKTIIFPDGSRRPCGETGKPWYFLEEMYPAYGNLVSRDVGA 308
Query: 256 RAIYLKMLEGKG------VFLDARGIE-DFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVA 307
RAI G G VFLD + + ++ V + K G DP K + + P
Sbjct: 309 RAILQVCEAGMGIDGRYEVFLDVTHLPIETLNKLEVVLDIYYKFTGEDPKKVPMRIFPAV 368
Query: 308 HYTMGGISVD------------IFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVS 355
HY+MGG VD + T I G + GE+ +HGANRL +NSLL C+ +
Sbjct: 369 HYSMGGAWVDWPASDDEDRNSRYRHMTNIPGCFNCGESDFQ-YHGANRLGANSLLSCLYA 427
Query: 356 GL----EVARTILREEPKRGANDAPYNFDELGDV------------------------DS 387
GL E AR I +PY+ +L +
Sbjct: 428 GLVAGDEAARFI------ESFGSSPYSQQDLKHALQQEEELSQEILSRKGGENIFSLHEE 481
Query: 388 IREIMWNHAGIVRDKSSLLEGLKKLEGVEADQRLKVV----------------------- 424
I +M N+ + R+ ++L+E L+KL+ E +RLK V
Sbjct: 482 IARVMVNNVTVKRENNALVETLQKLK--EFRERLKKVSVHDSSRFANKTFHFVRQMEPML 539
Query: 425 --AKAVLTLALEREESRGSHYRRDFP 448
A A+ AL R E RGSHY+ +FP
Sbjct: 540 ELALAITKGALLRNEFRGSHYKPEFP 565
>sp|P17412|FRDA_WOLSU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|320457|pir||B44954
fumarate reductase (EC 1.3.99.1) flavoprotein -
Wolinella succinogenes >gi|48513|emb|CAA35875.1|
(X51509) flavoprotein [Wolinella succinogenes]
>gi|2281999|emb|CAA04214.1| (AJ000662) fumarate
reductase flavoprotein subunit [Wolinella succinogenes]
Length = 656
Score = 145 bits (363), Expect = 8e-34
Identities = 154/547 (28%), Positives = 244/547 (44%), Gaps = 109/547 (19%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGP-KSKDSNSYLAQAGIAFPL-----VEGDSIRIH 61
++GGGLAGL AA++ +KG+ ++ K S+S AQ G+ L +GD+ +H
Sbjct: 10 VIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLH 69
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGV-------------------TFTGN 102
+DT++ + D++V ++ + +A L + GV T T
Sbjct: 70 FMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEE 129
Query: 103 ELEGGHSHPRVFT---------IKSETGKHVIPILEKHARELGVNFVRGFVEEIGI--KN 151
+ G H R F TG ++ + +LGV+ ++ E I + ++
Sbjct: 130 DFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVS-IQDRKEAIALIHQD 188
Query: 152 GKLAGV----FLNGELLKFDA--VVVATGGFSGLYRFT--AGVKENIGLLIGDLALKGVP 203
GK G + G+++ + A ++ATGG+ +Y+ T A V E G I L
Sbjct: 189 GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA-LETGIAQ 247
Query: 204 LRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKL-------VTGDGERFVNELETRDVVAR 256
L +ME VQFHPT L+TE RG G L + D E EL +RDVV+R
Sbjct: 248 LGNMEAVQFHPTPLFPSGI-LLTEGCRGDGGILRRCGWTPIHADYEPEKKELASRDVVSR 306
Query: 257 AIYLKMLEGKGV--------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTP 305
+ + +GKGV +LD G + + V + + GIDP + PV P
Sbjct: 307 RMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLP 366
Query: 306 VAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEV------ 359
+ HY+MGGI D +++GL++ GEAA HG NRL NS+ E VV+G+ V
Sbjct: 367 MQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE 426
Query: 360 --ARTILREEPK-------------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSS 404
A T + E K + ++ D + ++++M ++ GI RD
Sbjct: 427 HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPH 486
Query: 405 LLEGLKKLEGV------------------EADQRLKV-----VAKAVLTLALEREESRGS 441
L + +K+LE + E ++ +V VA V AL+R ESRG+
Sbjct: 487 LEKSVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGA 546
Query: 442 HYRRDFP 448
H R D+P
Sbjct: 547 HNREDYP 553
>sp|P31039|DHSA_BOVIN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
COMPLEX II) >gi|387584|gb|AAA30758.1| (M60879) succinate
dehydrogenase flavoprotein subunit [Bos taurus]
Length = 665
Score = 145 bits (362), Expect = 1e-33
Identities = 150/553 (27%), Positives = 238/553 (42%), Gaps = 108/553 (19%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
+ + +VG G AGL AA L E G + + + S++ AQ GI L +E D+ R
Sbjct: 62 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 121
Query: 60 IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
H DT++ ++ D++ + + ++ + L ++G+ F+ E
Sbjct: 122 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 181
Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFLNGE 162
+GG +H R + TG ++ L + + FV F ++ +++G+ GV
Sbjct: 182 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMESGECRGVIA--- 237
Query: 163 LLKFDAVVVATGG---------FSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFH 213
L + V G + Y + G + G+P +D+EFVQFH
Sbjct: 238 LCIEERVHPPHQGQEHCHRHRSYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFH 297
Query: 214 PTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGK 266
PTG G LITE RG G L+ GERF+ +L +RDVV+R++ L++ EG+
Sbjct: 298 PTGIYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGR 356
Query: 267 G-------VFLDARGIE--DFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISV 316
G V+L + R P + + + G+D K+ IPV P HY MGGI
Sbjct: 357 GCGPEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPT 416
Query: 317 DIFYRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR 365
+ Y+ ++ GLYA GEAA HGANRL +NSLL+ VV G A +I
Sbjct: 417 N--YKGQVLRHVNGQDQGVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAE 474
Query: 366 E----------EPKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSL 405
+P G ++ N D+L + ++++ M +HA + R S L
Sbjct: 475 SCRPGDKVPSIKPNAG-EESVMNLDKLRFANGSIRTSELRLNMQKSMQSHAAVFRVGSVL 533
Query: 406 LEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSH 442
EG +K+ + D Q L + A + A R+ESRG
Sbjct: 534 QEGCEKISSLYGDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGP 593
Query: 443 YRRDFPFMRKEFE 455
R DF E++
Sbjct: 594 RREDFKERVDEYD 606
>pir||G81384 succinate dehydrogenase (EC 1.3.99.1) flavoprotein Cj0409
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967883|emb|CAB74245.1| (AL139075) fumarate
reductase flavoprotein subunit [Campylobacter jejuni]
Length = 663
Score = 143 bits (356), Expect = 5e-33
Identities = 157/559 (28%), Positives = 233/559 (41%), Gaps = 127/559 (22%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGP-KSKDSNSYLAQAGIAFPLV-----EGDSIRIH 61
++GGGLAGL AAI + + G V+++ K S+S Q G+ L EGD+ +H
Sbjct: 10 VIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGAKGEGDNEDLH 69
Query: 62 VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTG-----------------NEL 104
DT++ + D+EV + +A L + GV +T E
Sbjct: 70 FADTVKGSDWGCDQEVARMFAQTAPKAVRELAAWGVPWTRVTKGPRTVVINAQKTVIEEK 129
Query: 105 EGGHS-----------------------HPRVFTIKSETGKHVIPILEKHARELGVNFVR 141
E H H ++ + +E KH + I++ R V +
Sbjct: 130 EEAHGLINARDFGGTKKWRTCYIADATGHCMLYGVANEAIKHQVKIID---RMEAVRIIH 186
Query: 142 GFVEEIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFT--AGVKENIGLLIGDL 197
+ +G+ +A NG+L+ + A ++ATGG+ +Y+ T A + E G I L
Sbjct: 187 DGKKCLGV----IARDLTNGQLIAYIARGTMIATGGYGRIYKQTTNAVICEGTGAAIA-L 241
Query: 198 ALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELET 250
L +ME VQFHPT + L+TE RG G L DG RF+ EL +
Sbjct: 242 ETGLCRLSNMEAVQFHPTPIVPSGI-LLTEGCRGDGGILRDVDGYRFMPDYEPEKKELAS 300
Query: 251 RDVVARAIYLKMLEGKGV--------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPG-- 297
RDVV+R + + +GKGV +LD G + V + K GIDP
Sbjct: 301 RDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILGRAHVEKNLRDVQDICKTFNGIDPADE 360
Query: 298 --KDLIPVTPVAHYTMGGISVDIFYRTR-IRGLYAIGEAASNGFHGANRLASNSLLECVV 354
K PV P+ HY+MGGI ++ + GL+A GEAA HG NRL NS E VV
Sbjct: 361 GPKGWAPVLPMQHYSMGGIRTKPTGESQWLNGLFACGEAACWDMHGFNRLGGNSCAETVV 420
Query: 355 SGL-------------------EVARTILREEPK--RGANDAPYNFDELGDVDSIREIMW 393
+G+ V + L +E + + D + + ++EIMW
Sbjct: 421 AGMIVGDYFADYCKNNGEVIDTNVVKDFLTKEYQYLKSLVDKEGKHNVFEIKNRMKEIMW 480
Query: 394 NHAGIVRDKSSLLEGLKKLEGVEADQ------------------------RLKVVAKAVL 429
+ I R L E + +LE + D R+ +A V
Sbjct: 481 DKVAIFRTGEGLKEAVDELEKLYKDSQDVKVHCKELDCANPELEEAYRVPRMLKIALCVA 540
Query: 430 TLALEREESRGSHYRRDFP 448
AL R ESRG+HYR D+P
Sbjct: 541 YGALLRTESRGAHYREDYP 559
>pir||S73049 hypothetical protein L308_F3_120 - Mycobacterium leprae
>gi|467190|gb|AAA17348.1| (U00022) L308_f3_120
[Mycobacterium leprae]
Length = 401
Score = 143 bits (356), Expect = 5e-33
Identities = 117/379 (30%), Positives = 177/379 (45%), Gaps = 51/379 (13%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHV 62
+V IVG G AG+ AA+ + + S++ AQ G+ L VE D+ H
Sbjct: 8 DVVIVGAGGAGMRAAVEAGPRVRTAVLTKLYPTRSHTGAAQGGMCAALANVEDDNWEWHA 67
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHP---- 111
DT++ G Y+ D++ V + ++ +A L G+ F GGH+
Sbjct: 68 FDTVKGGDYLADQDAVEIMCKEAIDAVLDLEKMGMPFNRTPEGRIDQRRFGGHTRDHGKA 127
Query: 112 ---RVFTIKSETGKHVIPILEKHARELGVNFVRGF---------VEEIGIKNGKLAGVFL 159
R TG ++ L ++ + V F F + G +A
Sbjct: 128 PVRRACYAADRTGHMILQTLYQNCVKHDVEFFNEFYALDLVLTQTPSGPVTTGVVAYELA 187
Query: 160 NGELLKFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
G++ F AVV+ATGG +Y+ T+ G IG + KG+PL DMEF QFHPTG
Sbjct: 188 TGDIHVFHTKAVVIATGGSGRMYKTTSNAHTLTGDGIGIVFRKGLPLEDMEFHQFHPTGL 247
Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG--- 267
G LI+EAVRG G +L+ G+ ERF+ +L RD+VAR++ L++LEG+G
Sbjct: 248 AG-LGILISEAVRGEGGRLLNGENERFMEHYAPTIVDLAPRDIVARSMVLEVLEGRGAGP 306
Query: 268 ----VFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDIFY 320
V++D R G E + + P + + G+DP +L+PV P HY MGGI +
Sbjct: 307 HKDYVYIDVRHLGEEVLESKLPDITEFSRTYLGVDPVHELVPVYPTCHYVMGGIPTTVTG 366
Query: 321 R------TRIRGLYAIGEA 333
+ + + GLYA A
Sbjct: 367 QVLRDNTSTVPGLYAAANA 385
>pir||T43189 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
chain - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|1749734|dbj|BAA13924.1| (D89263) similar
to Saccharomyces cerevisiae succinate dehydrogenase,
SWISS-PROT Accession Number Q00711 [Schizosaccharomyces
pombe]
Length = 487
Score = 142 bits (355), Expect = 7e-33
Identities = 136/434 (31%), Positives = 192/434 (43%), Gaps = 91/434 (20%)
Query: 99 FTGNELE---GGHSHPRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGI----KN 151
F G LE GG ++ R + TG ++ L + + NF F+E G+ +
Sbjct: 12 FGGQSLEYGKGGQAY-RCAAVADRTGHSILHTLYGQSLKHNTNF---FIEYFGMDLLMEG 67
Query: 152 GKLAGVFL----NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLR 205
G+ GV +G + +F A ++ATGG+ Y G ++ G+PL+
Sbjct: 68 GECRGVIAMNLEDGSIHRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGLPLQ 127
Query: 206 DMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAI 258
D+EFVQFHPTG G LITE RG G L+ GERF+ +L +RDVV+RA+
Sbjct: 128 DLEFVQFHPTGIYGAGC-LITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAM 186
Query: 259 YLKMLEGKGVF---------LDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAH 308
+++ EG+GV L E K+R P + G+D K+ IPV P H
Sbjct: 187 TVEIREGRGVGPEKDHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVH 246
Query: 309 YTMGGI---------SVDIFYRTRI-RGLYAIGEAASNGFHGANRLASNSLLECVVSG-- 356
Y MGGI ++D + +I GLYA GEAA HG NRL +NSLL+ VV G
Sbjct: 247 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHGGNRLGANSLLDIVVFGRA 306
Query: 357 --LEVARTILREEP-KRGANDAPYNFDELGDVDSIR----------------EIMWNHAG 397
L + T+ P K A DA D L +D IR + M
Sbjct: 307 CALHIKDTLEPNTPHKPLAADA--GLDSLKFLDQIRTSQGPKHTSEIRLDMQKTMQRDVS 364
Query: 398 IVRDKSSLLEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALE 434
+ R + +L EG+K + V+ + L A AL
Sbjct: 365 VFRMEETLQEGVKNIARVDGTYKDIGIRDRGLIWNTDLVEALELRNLLTCAVQTANAALN 424
Query: 435 REESRGSHYRRDFP 448
R+ESRG+H R D+P
Sbjct: 425 RKESRGAHAREDYP 438
>pir||E71494 probable succinate dehydrogenase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3329036|gb|AAC68194.1| (AE001330)
Succinate Dehydrogenase [Chlamydia trachomatis]
Length = 573
Score = 140 bits (350), Expect = 3e-32
Identities = 161/564 (28%), Positives = 237/564 (41%), Gaps = 132/564 (23%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGDSIRIHVL 63
I+GGGLAGL AA+ L ++G+ V + K K S+S AQ GI L E DS IH
Sbjct: 10 IIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQGGINAALNLKGENDSPYIHAY 69
Query: 64 DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT----GN---ELEGGHSHPRVFTI 116
DTI+ G ++ D+ V + + L G F GN GG + R
Sbjct: 70 DTIKGGDFLADQPPVLEMCLTAPRIIHMLDRFGCPFNRDADGNLDVRRFGGTLYHRTVFC 129
Query: 117 KSETGKHVIPILEKHAR--ELGVNFVRG----FVEEIGIKNGKLAGVFLNG------ELL 164
+ TG+ ++ +++ R E ++ FV I G+ GV + E++
Sbjct: 130 GASTGQQLMYTMDEQVRRRECQGKIIKRENHEFVRLITNTEGRACGVVVMNLFNHRLEVI 189
Query: 165 KFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG-RRTY 223
+ DAV++ATGG +++ + G G L ++G+ + EF+Q HPT G +
Sbjct: 190 QGDAVIIATGGLGVIFKMSTNSTICTGAANGRLFMQGMHYANPEFIQIHPTAISGLDKLR 249
Query: 224 LITEAVRGAGAK----------LVTGDGER-----------FVNE-------LETRDVVA 255
LI+E+VRG G + ++ DG R F+ E L +RDV A
Sbjct: 250 LISESVRGEGGRVWVPGCSSKTIIFPDGSRRPCGETGKPWYFLEEMYPAYGNLVSRDVGA 309
Query: 256 RAIYLKMLEGKG------VFLDARGIE-DFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVA 307
RAI G G VFLD + + ++ V + K G DP K + + P
Sbjct: 310 RAILQVCEAGLGIDGRHEVFLDVTHLPVETLNKLEAVLDIYHKFTGEDPKKVPMRIFPAV 369
Query: 308 HYTMGGISVD------------IFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVS 355
HY+MGG VD + T I G + GE+ +HGANRL +NSLL C+ +
Sbjct: 370 HYSMGGAWVDWPASDDRDRDSRYRHMTNIPGCFNCGESDFQ-YHGANRLGANSLLACLYA 428
Query: 356 GL----EVAR-----------------------TILREEPKRGANDAPYNFDELGDVDSI 388
GL E AR I RE R + + E I
Sbjct: 429 GLVAGDEAARFVESFGSCIYSQQDLNQALQQELEISREILSRQGGENAFALHE-----EI 483
Query: 389 REIMWNHAGIVRDKSSLLEGLKKLEGVEADQRLKVV------------------------ 424
+M ++ + R+ +L E L KL+ E +R+K V
Sbjct: 484 ARVMVSNVTVKRENKALEETLHKLK--EFRERIKKVSVHDSSRFANKTFHFVRQMEPMLE 541
Query: 425 -AKAVLTLALEREESRGSHYRRDF 447
A A+ T AL R E RGSHY+ +F
Sbjct: 542 LALAITTGALLRNEFRGSHYKPEF 565
>pir||D70939 hypothetical protein Rv0248c - Mycobacterium tuberculosis (strain
H37RV) >gi|2909452|emb|CAA17340.1| (AL021929)
hypothetical protein Rv0248c [Mycobacterium
tuberculosis]
Length = 646
Score = 136 bits (338), Expect = 7e-31
Identities = 159/579 (27%), Positives = 241/579 (41%), Gaps = 134/579 (23%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGIAFPLVEG---DSIRI 60
+V ++G G AGL A I E+G+ V+++ +++ +A+ G A + D+ +
Sbjct: 10 DVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGKAHTVMAEGGCAAAMGNANPKDNWKT 69
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHPRV 113
H DT+R GK++N+ + ++ + L ++G F + GGH++PR+
Sbjct: 70 HFGDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTDDGRISQRNFGGHTYPRL 129
Query: 114 FTIKSETGKHVIPIL---------EKHARELGVN------FVRGFVEEIGIKNGKLAGVF 158
+ TG +I L E HA ELG F + E+ G +AG F
Sbjct: 130 AHVGDRTGLELIRTLQQKVVSLQQEDHA-ELGDYEARIKVFAECTITELLKDQGAIAGAF 188
Query: 159 ----LNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQF 212
+G + F+A VV+ATGG ++ T+ E G G L +MEFVQF
Sbjct: 189 GYWRESGRFIVFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINMEFVQF 248
Query: 213 HPTGFI---GRRTYLITEAVRGAGAKLVTGDGERFV------------------------ 245
HPTG + + L+TE VRG G L + RF+
Sbjct: 249 HPTGMVWPPSVKGILVTEGVRGDGGVLKNSENSRFMFDYIPPVFKGQYAETEEEADQWLK 308
Query: 246 --------NELETRDVVARAIYLKMLEGK-----GVFLDARG---IEDFKDRFPYVYSVL 289
+L RD VARAI ++ G+ GV+LD + K R P +Y
Sbjct: 309 DNDSARRTPDLLPRDEVARAINSEVKAGRGTPHGGVYLDIASRLTPAEIKRRLPSMYHQF 368
Query: 290 KK-EGIDPGKDLIPVTPVAHYTMGGISVDI-FYRTRIRGLYAIGEAASNGFHGANRLASN 347
K+ +D + V P HY MGG+ VD + GL+A GE A G HG+NRL N
Sbjct: 369 KELAEVDITTQAMEVGPTCHYVMGGVEVDADTGAATVPGLFAAGECA-GGMHGSNRLGGN 427
Query: 348 SLLECVVSGLEV---ARTILR------------------------EEPKRG-ANDAPY-- 377
SL + +V G A +R E PK G A + PY
Sbjct: 428 SLSDLLVFGRRAGLGAADYVRALSSRPAVSAEAIDAAAQQALSPFEGPKDGSAPENPYAL 487
Query: 378 ----------------NFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLE---GVEAD 418
N DE+ ++ +W+ R + L+EG ++ + D
Sbjct: 488 HMDLQYVMNDLVGIIRNADEISRALTLLAELWS-----RYHNVLVEGHRQYNPGWNLSID 542
Query: 419 QR-LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
R + +V++ V AL+R ESRG H R D P M + R
Sbjct: 543 LRNMLLVSECVARAALQRTESRGGHTRDDHPGMDPNWRR 581
>dbj|BAB06811.1| (AP001517) succinate dehydrogenase flavoprotein [Bacillus
halodurans]
Length = 589
Score = 135 bits (337), Expect = 9e-31
Identities = 149/535 (27%), Positives = 232/535 (42%), Gaps = 92/535 (17%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGDSIRI 60
+V +VGGGLAGL+A I + E GV V + K S+S AQ GI + EGDS
Sbjct: 5 KVIVVGGGLAGLMATIKVAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWE 64
Query: 61 HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRV 113
H DT+ G ++ ++ V + + + GV F GG H R
Sbjct: 65 HFDDTVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTAEGLLDFRRFGGTQHHRT 124
Query: 114 FTIKSETGKHVIPILEKHAREL----------GVNFVRGFVEEIGIKNGKLAGVFLNGEL 163
+ TG+ ++ L++ R G F+ +++ GI G A E
Sbjct: 125 AFAGATTGQQLLYALDEQVRRHETSGLVTKYEGWEFISAIIDDEGICRGITAQNLKTSEF 184
Query: 164 LKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR- 220
F DAV++ATGG ++ + N G L +GV + EF+Q HPT G
Sbjct: 185 QSFSADAVIMATGGPGIIFGKSTNSVINTGYAAAKLYEQGVYYANGEFIQIHPTAIPGDD 244
Query: 221 RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIY-----LKM-LE 264
+ L++E+ RG G ++ T G F+ E L RD+ R I+ LK+ +
Sbjct: 245 KLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDLKLGIN 304
Query: 265 GKG-VFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
G+ V+LD + ++ + + + +K G DP K + + P HY+MGG+ +D
Sbjct: 305 GENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKVPMKIFPAVHYSMGGMWIDYDQ 364
Query: 321 RTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGL------------------EVART 362
T I GL+A GE HGANRL +NSLL + G+ + +
Sbjct: 365 MTNIPGLFAAGE-CDYSQHGANRLGANSLLSAIFGGMVAGPKAVEYMNGLEKSAESMPSS 423
Query: 363 ILREEPKR------------GANDAPYNFDELGD--VDSIREIMWNHAGIVRDK--SSLL 406
+ E K+ G +A ELG+ D++ + +N + D+ L+
Sbjct: 424 LFEGELKKEQEKFDDILKMDGKENAYVLHKELGEWMTDNVTVVRYNDKLLKTDEKIQELM 483
Query: 407 EGLKKL----------EGVEADQRLKVVAK--AVLTL-ALEREESRGSHYRRDFP 448
E K + +G ++L + K V+TL A R ESRG+HY+ DFP
Sbjct: 484 ERYKNIDINDTAKWSNQGASFTRQLDGMLKLARVITLGAYNRNESRGAHYKPDFP 538
>emb|CAA69872.1| (Y08563) succinate dehydrogenase subunit A [Paenibacillus macerans]
Length = 581
Score = 129 bits (321), Expect = 7e-29
Identities = 145/539 (26%), Positives = 229/539 (41%), Gaps = 92/539 (17%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGD 56
M V +VGGGLAGL+A I E GV V + K S+S AQ GI + EGD
Sbjct: 1 MAKQSVIVVGGGLAGLMATIKSAEAGVPVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
S H DT+ G ++ ++ V + + + GV F GG
Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120
Query: 110 HPRVFTIKSETGKHVIPILEKHARELGV----------NFVRGFVEEIGIKNGKLAGVFL 159
H R + TG+ ++ L++ R F+ +++ G+ G A
Sbjct: 121 HHRTAFAGATTGQQLLYALDEQVRRHEAAGLVTKYENWEFLSVVLDDDGVCRGITAQNLR 180
Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
+ E++ F DAV++ATGG ++ T N G + +GV + EF+Q HPT
Sbjct: 181 SMEIVTFASDAVILATGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAI 240
Query: 218 IGR-RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK 266
G + L++E+ RG G ++ T G F+ E L RD+ R I+ ++ K
Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDQK 300
Query: 267 -------GVFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
V+LD + ++ + + + +K G DP K + + P HY+MGG+ V
Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360
Query: 317 DIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGL-------EVARTILR---- 365
D T I GL+A GE +HGANRL +NSL+ + G+ E R + +
Sbjct: 361 DYNQMTNIPGLFAAGECEYQ-YHGANRLGANSLVSAIYGGMVAGPKAVEYIRGLKKSADD 419
Query: 366 ------------EEPK-------RGANDAPYNFDELGD--VDSIREIMWNH--AGIVRDK 402
+E K G+ +A ELG+ D++ + +N +
Sbjct: 420 IRPDVFDRYRKAQEDKFEGLLNMNGSENAYVLHKELGEWMTDNMTVVRYNDRLEATINKI 479
Query: 403 SSLLEGLKKLEGVEADQ-------------RLKVVAKAVLTLALEREESRGSHYRRDFP 448
L E KK+ + + + +A+A+ AL R ESRG+HY+ DFP
Sbjct: 480 KELKERYKKININDTSRWNNAGAAFTRQLWNMLELAEAMTLGALLRNESRGAHYKPDFP 538
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1 >gi|6573310|pdb|1D4C|D Chain D,
Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1 >gi|6573308|pdb|1D4C|B Chain B,
Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1 >gi|6573309|pdb|1D4C|C Chain C,
Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 129 bits (320), Expect = 9e-29
Identities = 128/436 (29%), Positives = 194/436 (44%), Gaps = 89/436 (20%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGI-------AFPLVEGD 56
+V I+G G AGL AA+S + G V ++ + N+ LA G+ L D
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 187
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF-- 114
+I + DT++ G+ IND E+V + + S+++ +L S G T GG S R
Sbjct: 188 KKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRP 247
Query: 115 TIKSETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFLNGE-----LLKFD 167
T + G HV +L +A + G + V + +GK+ GV + GE ++K D
Sbjct: 248 TGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKAD 307
Query: 168 AVVVATGGFSG----LYRFTAGVK----------ENIGLLIGDLALK-GVPLRDMEFVQF 212
AVV+A GGF+ + ++ +K GL D+AL+ G RD+E++Q
Sbjct: 308 AVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGL---DVALQAGAATRDLEYIQA 364
Query: 213 HPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDA 272
HPT + +ITEAVRG GA +V +G RF+NE+ TRD + AI + E + D
Sbjct: 365 HPT-YSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDD 423
Query: 273 RGIEDFKDRFPYVYSVLKKEG---------------------------IDPGKD------ 299
+ K YV+ + KEG + GKD
Sbjct: 424 SIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERP 483
Query: 300 ------------LIPVTPVAHYTMGGISVDIFYRTR-------IRGLYAIGEAASNGFHG 340
+ + P H+TMGG+ +D + I GLYA GE + G HG
Sbjct: 484 DLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGE-VTGGVHG 542
Query: 341 ANRLASNSLLECVVSG 356
ANRL N++ + V G
Sbjct: 543 ANRLGGNAISDIVTYG 558
>gb|AAF49990.1| (AE003543) CG5718 gene product [Drosophila melanogaster]
Length = 525
Score = 128 bits (319), Expect = 1e-28
Identities = 123/382 (32%), Positives = 168/382 (43%), Gaps = 76/382 (19%)
Query: 139 FVRGFVEEIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGD 196
FV + G G LA +G +F A VVA GG +Y T G
Sbjct: 81 FVLDLIMSQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVYFSTTAGHTCTGDGNAW 140
Query: 197 LALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELE 249
++ + +PL DMEFVQFHPTG G LITE VRG G + GERF+ +L
Sbjct: 141 VSRQELPLMDMEFVQFHPTGIYGAGC-LITEGVRGEGGFFLNCKGERFMERYAPKAKDLA 199
Query: 250 TRDVVARAIYLKMLEGKG-------VFLDARGIED--FKDRFPYVYSVLKKEG-IDPGKD 299
+RDVVARA+ +++L G G V L I+ K R P + + +D K+
Sbjct: 200 SRDVVARAMTMEVLAGNGCGPLKDHVHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKE 259
Query: 300 LIPVTPVAHYTMGGISVDIFYRTRI------------RGLYAIGEAASNGFHGANRLASN 347
+PV P HY MGGI D Y+ R+ +GLY+ GE + HGANRL +N
Sbjct: 260 PVPVLPTVHYNMGGIPTD--YKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGAN 317
Query: 348 SLLECVVSGLEVARTILR-----EEPKRGANDAPY----NFDELGDVD----------SI 388
SLL+ ++ G A I ++P + + A NF L D +
Sbjct: 318 SLLDLIIFGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLRMEL 377
Query: 389 REIMWNHAGIVRDKSSLLEGLKKLEG---------------------VEADQRLKVVAKA 427
+ M HA + R+ L EGL K+ VE + ++A A
Sbjct: 378 QRTMTKHAAVFREGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNLVETLELQNMLANA 437
Query: 428 V--LTLALEREESRGSHYRRDF 447
V +T R+ESRGSH R DF
Sbjct: 438 VHIITAMENRKESRGSHAREDF 459
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1 >gi|6573312|pdb|1D4E|A Chain A,
Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 127 bits (317), Expect = 2e-28
Identities = 127/436 (29%), Positives = 194/436 (44%), Gaps = 89/436 (20%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGI-------AFPLVEGD 56
+V I+G G AGL AA+S + G V ++ + N+ LA G+ L D
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 187
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF-- 114
+I + DT++ G+ IND E+V + + S+++ +L S G T GG S R
Sbjct: 188 KKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRP 247
Query: 115 TIKSETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFLNGE-----LLKFD 167
T + G HV +L +A + G + V + +GK+ GV + GE ++K D
Sbjct: 248 TGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKAD 307
Query: 168 AVVVATGGFSG----LYRFTAGVK----------ENIGLLIGDLALK-GVPLRDMEFVQF 212
AVV+A GGF+ + ++ +K GL D+AL+ G RD++++Q
Sbjct: 308 AVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGL---DVALQAGAATRDLQYIQA 364
Query: 213 HPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDA 272
HPT + +ITEAVRG GA +V +G RF+NE+ TRD + AI + E + D
Sbjct: 365 HPT-YSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDD 423
Query: 273 RGIEDFKDRFPYVYSVLKKEG---------------------------IDPGKD------ 299
+ K YV+ + KEG + GKD
Sbjct: 424 SIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERP 483
Query: 300 ------------LIPVTPVAHYTMGGISVDIFYRTR-------IRGLYAIGEAASNGFHG 340
+ + P H+TMGG+ +D + I GLYA GE + G HG
Sbjct: 484 DLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTAKPITGLYAAGE-VTGGVHG 542
Query: 341 ANRLASNSLLECVVSG 356
ANRL N++ + V G
Sbjct: 543 ANRLGGNAISDIVTYG 558
>sp|Q02469|FRDA_SHEFR FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT PRECURSOR (FLAVOCYTOCHROME
C) >gi|321662|pir||B44238 fumarate reductase (EC
1.3.99.1) flavocytochrome precursor - Shewanella
putrefaciens >gi|152719|gb|AAA70385.1| (L04283)
flavocytochrome c precursor [Shewanella frigidimarina]
Length = 596
Score = 123 bits (307), Expect = 3e-27
Identities = 128/438 (29%), Positives = 197/438 (44%), Gaps = 92/438 (21%)
Query: 4 MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
++V +VG G AG AAIS + G V +I + N+ LA G+ +
Sbjct: 152 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 211
Query: 56 DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
DS + DT++ G+ IND +V + S S ++ ++ + G T + GG S R
Sbjct: 212 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 271
Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
T + G HV+ +L +A + ++ RG +E + G + G+ + G +K
Sbjct: 272 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 330
Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
DAV++ATGGF+ A + ++ GL + + A G L+DM+++Q
Sbjct: 331 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 388
Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
HPT + + ++TEAVRG GA LV +G+RFVNE+ TRD + AI + GK +L
Sbjct: 389 AHPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 445
Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
R D++ P S++ K EGID GKD
Sbjct: 446 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 505
Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
I VTP H+TMGG+ +D + I GLY GE + G
Sbjct: 506 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 564
Query: 339 HGANRLASNSLLECVVSG 356
HGANRL N++ + + G
Sbjct: 565 HGANRLGGNAISDIITFG 582
>emb|CAB38558.1| (AJ132010) fumarate reductase flavocytochrome c3 [Shewanella
frigidimarina]
Length = 561
Score = 123 bits (307), Expect = 3e-27
Identities = 128/438 (29%), Positives = 197/438 (44%), Gaps = 92/438 (21%)
Query: 4 MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
++V +VG G AG AAIS + G V +I + N+ LA G+ +
Sbjct: 117 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 176
Query: 56 DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
DS + DT++ G+ IND +V + S S ++ ++ + G T + GG S R
Sbjct: 177 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 236
Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
T + G HV+ +L +A + ++ RG +E + G + G+ + G +K
Sbjct: 237 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 295
Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
DAV++ATGGF+ A + ++ GL + + A G L+DM+++Q
Sbjct: 296 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 353
Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
HPT + + ++TEAVRG GA LV +G+RFVNE+ TRD + AI + GK +L
Sbjct: 354 AHPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 410
Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
R D++ P S++ K EGID GKD
Sbjct: 411 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 470
Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
I VTP H+TMGG+ +D + I GLY GE + G
Sbjct: 471 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 529
Query: 339 HGANRLASNSLLECVVSG 356
HGANRL N++ + + G
Sbjct: 530 HGANRLGGNAISDIITFG 547
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 123 bits (307), Expect = 3e-27
Identities = 128/438 (29%), Positives = 197/438 (44%), Gaps = 92/438 (21%)
Query: 4 MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
++V +VG G AG AAIS + G V +I + N+ LA G+ +
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 186
Query: 56 DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
DS + DT++ G+ IND +V + S S ++ ++ + G T + GG S R
Sbjct: 187 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 246
Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
T + G HV+ +L +A + ++ RG +E + G + G+ + G +K
Sbjct: 247 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 305
Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
DAV++ATGGF+ A + ++ GL + + A G L+DM+++Q
Sbjct: 306 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 363
Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
HPT + + ++TEAVRG GA LV +G+RFVNE+ TRD + AI + GK +L
Sbjct: 364 AHPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 420
Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
R D++ P S++ K EGID GKD
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 480
Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
I VTP H+TMGG+ +D + I GLY GE + G
Sbjct: 481 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 539
Query: 339 HGANRLASNSLLECVVSG 356
HGANRL N++ + + G
Sbjct: 540 HGANRLGGNAISDIITFG 557
>pir||T16413 hypothetical protein F48E8.3 - Caenorhabditis elegans
>gi|746486|gb|AAC46539.1| (U23514) similar to
flavoprotein subunit of fumarate reductase and other
oxidoreductases [Caenorhabditis elegans]
Length = 474
Score = 122 bits (303), Expect = 9e-27
Identities = 137/451 (30%), Positives = 191/451 (41%), Gaps = 105/451 (23%)
Query: 6 VGIVGGGLAGLVAAISLVEKGVDVSII-GPKSKDSNSYLAQAGIAFPLVEG-------DS 57
V +VGGGLAGL A++ ++ G V ++ G + NS A +GI E DS
Sbjct: 11 VVVVGGGLAGLSASLDIINGGGRVILVEGEGNTGGNSAKASSGINGAGTETQEKLGIKDS 70
Query: 58 IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIK 117
+ V DT+ AG ND+++V + + S +A FL V T L GGHS PR I
Sbjct: 71 PELLVKDTLSAGDSENDKKLVEILAANSADAVEFLRGVEVDLTDVNLCGGHSVPRTHWIP 130
Query: 118 SETGKHVIP------------ILEKHARELGVNFVRGFVEEIGI--KNGKLAGVFL---- 159
S IP + EK + + + +GI +NGK++G+ +
Sbjct: 131 SPKEGRPIPAGFEIMKRLRTRLNEKQSENPEAFKLLTQTKMVGILRENGKVSGIEIVTSA 190
Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLR--DMEFVQFHPT 215
+GE K DAV++ATGGFS +KE + G G + D +
Sbjct: 191 SGEKSKIIGDAVILATGGFSADETL---LKEFGAEIFGFPTTNGAFAKGDDSSYSVCRSK 247
Query: 216 GFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLE----------- 264
I R L EA+RG GA L+ G+RF NEL RD + I L++ E
Sbjct: 248 RSISRNKVLAAEAIRGKGALLINSKGQRFGNELGRRDYLTGKI-LELAEPIEESFQGGSA 306
Query: 265 GKG---VFLDARGIEDFKDRFPYVYSVLKK--------------EGIDP----------- 296
G+ + ++ +E F YS++KK GID
Sbjct: 307 GRNAAIMIMNEANVEAFGRPAFNFYSIVKKFFAKYENSAELAKALGIDESAIKTTLEEYQ 366
Query: 297 -----------GKDLIPVT--------------PVAHYTMGGISVDIFYRT------RIR 325
GK + PV+ P HYTMGG+ +D R I
Sbjct: 367 KSFDGKSEDPFGKKVFPVSAISPTEPIYAAIVVPAIHYTMGGLKIDEATRVIDEHGKPIV 426
Query: 326 GLYAIGEAASNGFHGANRLASNSLLECVVSG 356
GL+A GE + G HG+NRLA NSLLECVV G
Sbjct: 427 GLFAAGE-VTGGVHGSNRLAGNSLLECVVFG 456
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 120 bits (297), Expect = 4e-26
Identities = 127/438 (28%), Positives = 196/438 (43%), Gaps = 92/438 (21%)
Query: 4 MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
++V +VG G AG AAIS + G V +I + N+ LA G+ +
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 186
Query: 56 DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
DS + DT++ G+ IND +V + S S ++ ++ + G T + GG S R
Sbjct: 187 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 246
Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
T + G HV+ +L +A + ++ RG +E + G + G+ + G +K
Sbjct: 247 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 305
Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
DAV++ATGGF+ A + ++ GL + + A G L+DM+++Q
Sbjct: 306 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 363
Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
PT + + ++TEAVRG GA LV +G+RFVNE+ TRD + AI + GK +L
Sbjct: 364 AAPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 420
Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
R D++ P S++ K EGID GKD
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 480
Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
I VTP H+TMGG+ +D + I GLY GE + G
Sbjct: 481 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 539
Query: 339 HGANRLASNSLLECVVSG 356
HGANRL N++ + + G
Sbjct: 540 HGANRLGGNAISDIITFG 557
>pir||A27763 succinate dehydrogenase (EC 1.3.99.1) flavoprotein - Bacillus
subtilis
Length = 586
Score = 118 bits (292), Expect = 2e-25
Identities = 143/545 (26%), Positives = 223/545 (40%), Gaps = 104/545 (19%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGD 56
M + +VGGGLAGL+A I E G+ V + K S+S AQ GI + EGD
Sbjct: 1 MSQSSIIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGD 60
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
S H DT+ G ++ ++ V + + L GV F GG
Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQ 120
Query: 110 HPRVFTIKSETGKHVIPILEKHAREL----------GVNFVRGFVEEIGIKNGKLAGVFL 159
H R + TG+ ++ L++ R G F+ +++ G +A
Sbjct: 121 HHRTAYAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLT 180
Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
N ++ F DAV++ATGG ++ + N G + +G + EF+Q HPT
Sbjct: 181 NMQIESFRSDAVIMATGGPGIIFGKSTNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI 240
Query: 218 IGR-RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK 266
G + L++E+ RG G ++ T G F+ E L RD+ R I+ + K
Sbjct: 241 PGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVNQK 300
Query: 267 -------GVFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
V+LD + ++ + + + +K G DP K + + P HY+MGG+ V
Sbjct: 301 LGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKLPMKIFPAVHYSMGGLWV 360
Query: 317 DIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECV-------------VSGLEVART- 362
D T I GL+A GE HG NRL SLL + V+GLE +
Sbjct: 361 DYDQMTNIPGLFAAGE-CDYSMHGGNRLERTSLLSAIYGGMVAGPNAVKYVNGLESSAED 419
Query: 363 ---------ILREEPK-------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLL 406
+ +EE K G +A ELG E M + +VR LL
Sbjct: 420 MSSSLFDAHVKKEEEKWADIMIMDGTENAYVLHKELG------EWMTANVTVVRHNDKLL 473
Query: 407 EGLKKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHY 443
+ K+ E +E +++ + +A+ + A R ESRG+HY
Sbjct: 474 KTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNMLQLARVITLGAYNRNESRGAHY 533
Query: 444 RRDFP 448
+ D+P
Sbjct: 534 KPDYP 538
>gb|AAG12518.1|AC011017_7 (AC011017) L3184.7 [Leishmania major]
Length = 1147
Score = 115 bits (285), Expect = 1e-24
Identities = 147/490 (30%), Positives = 204/490 (41%), Gaps = 131/490 (26%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGI-----AFPLVEG--DSIR 59
IVGGGLAG AAI G V ++ + K NS A +GI +G D +
Sbjct: 392 IVGGGLAGCSAAIEAANCGAQVILLEKEPKLGGNSAKATSGINAWGTRAQAKQGIMDGGK 451
Query: 60 IHVLDTIRAGKYINDEEVVWNVIS-KSTEAYSFLVSHGVTFTGNELEGGHSHPRV----- 113
DT R+GK N + + +S KS++A +L GV T GG S R
Sbjct: 452 FFERDTHRSGKGGNCDPCLVKTLSVKSSDAVKWLSELGVPLTVLSQLGGASRKRCHRAPD 511
Query: 114 ----------FTIKSETGKHVIPILEKHAREL-GVNFVR----GFVEEIGIKNGKLAGVF 158
FTI H++ L +H + G+ V G+ + GV
Sbjct: 512 KSDGTPVPVGFTIMKTLENHIVNNLSRHVTVMTGITVTALESTSHVRPDGVLVKHVTGVR 571
Query: 159 L-----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLL-----------IGD---LAL 199
L +L DAV++ATGGFS + + +++ L GD +A
Sbjct: 572 LIQASGQSMVLNADAVILATGGFSNDHTPNSLLQQYAPQLSSFPTTNGVWATGDGVKMAS 631
Query: 200 K-GVPLRDMEFVQFHPTGFI------GRRTYLITEAVRGAGAKLVTGDGERFVNELETRD 252
K GV L DM+ VQ HPTG I R YL EA+RG+G L+ +GERFVNEL+ R
Sbjct: 632 KLGVALVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVNELDLRS 691
Query: 253 VVARAIYLK----------------------MLEGK---GVFLDARGIEDFKDRFPYV-- 285
VV++AI + L GK G + + G+ D +
Sbjct: 692 VVSQAIIAQDNVYPGSGGSKFAYCVLNETAAKLFGKNFLGFYWNRLGLFQKSDSVAGLAK 751
Query: 286 ---------------YSVLKKEGIDP----GKDLIP-------------VTPVAHYTMGG 313
Y L + ++P GK++ P +TP HYTMGG
Sbjct: 752 LIGCPEANVMATLKQYEELSSKKLNPCPLTGKNVFPCVLGTQGPYYVALITPSIHYTMGG 811
Query: 314 --ISVDIFYRTR-----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGL--- 357
IS +T+ I GL+ GE ++G HG NRL NSLLECVV G
Sbjct: 812 CLISPSAEMQTKDNSGVTPVRRPILGLFGAGE-VTDGVHGGNRLGGNSLLECVVFGKIAG 870
Query: 358 EVARTILREE 367
+ A TIL+++
Sbjct: 871 DRAATILQKK 880
>sp|P08065|DHSA_BACSU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
>gi|143526|gb|AAA22746.1| (M13470) succinate
dehydrogenase flavoprotein subunit [Bacillus subtilis]
>gi|1770052|emb|CAA99547.1| (Z75208) flavoprotein
subunit of succinate dehydrogenase complex [Bacillus
subtilis] >gi|2635309|emb|CAB14804.1| (Z99118) succinate
dehydrogenase (flavoprotein subunit) [Bacillus subtilis]
Length = 586
Score = 114 bits (283), Expect = 2e-24
Identities = 141/545 (25%), Positives = 222/545 (39%), Gaps = 104/545 (19%)
Query: 1 MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGD 56
M + +VGGGLAGL+A I E G+ V + K S+S AQ GI + EGD
Sbjct: 1 MSQSSIIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGD 60
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
S H DT+ G ++ ++ + + + L V F GG
Sbjct: 61 SPWEHFDDTVYGGDFLANQPPLKAMCEAAPSIIHLLDRMAVMFNRTPEGLLDFRRFGGTQ 120
Query: 110 HPRVFTIKSETGKHVIPILEKHAREL----------GVNFVRGFVEEIGIKNGKLAGVFL 159
H R + TG+ ++ L++ R G F+ +++ G +A
Sbjct: 121 HHRTAYAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLT 180
Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
N ++ F DAV++ATGG ++ + N G + +G + EF+Q HPT
Sbjct: 181 NMQIESFRSDAVIMATGGPGIIFGKSTNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI 240
Query: 218 IGR-RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK 266
G + L++E+ RG G ++ T G F+ E L RD+ R I+ + K
Sbjct: 241 PGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVNQK 300
Query: 267 -------GVFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
V+LD + ++ + + + +K G DP K + + P HY+MGG+ V
Sbjct: 301 LGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKLPMKIFPAVHYSMGGLWV 360
Query: 317 DIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECV-------------VSGLEVART- 362
D T I GL+A GE HG NRL SLL + V+GLE +
Sbjct: 361 DYDQMTNIPGLFAAGE-CDYSMHGGNRLERTSLLSAIYGGMVAGPNAVKYVNGLESSAED 419
Query: 363 ---------ILREEPK-------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLL 406
+ +EE K G +A ELG E M + +VR LL
Sbjct: 420 MSSSLFDAHVKKEEEKWADIMIMDGTENAYVLHKELG------EWMTANVTVVRHNDKLL 473
Query: 407 EGLKKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHY 443
+ K+ E +E +++ + +A+ + A R ESRG+HY
Sbjct: 474 KTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNMLQLARVITLGAYNRNESRGAHY 533
Query: 444 RRDFP 448
+ D+P
Sbjct: 534 KPDYP 538
>gi|6320788 Yel047cp [Saccharomyces cerevisiae] >gi|418423|sp|P32614|YEF7_YEAST
HYPOTHETICAL 50.8 KD PROTEIN IN PAU2-GLY1 INTERGENIC
REGION >gi|320733|pir||S30830 fumarate reductase (EC
1.3.99.1) - yeast (Saccharomyces cerevisiae)
>gi|603632|gb|AAB64995.1| (U18779) Yel047cp
[Saccharomyces cerevisiae]
Length = 470
Score = 107 bits (264), Expect = 3e-22
Identities = 135/465 (29%), Positives = 195/465 (41%), Gaps = 106/465 (22%)
Query: 6 VGIVGGGLAGLVAAISLVEK-GVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG-------D 56
V ++G GLAGL AA LV K + V+I+ S NS A +GI E D
Sbjct: 6 VVVIGTGLAGLAAANELVNKYNIPVTILEKASSIGGNSIKASSGINGACTETQRHFHIED 65
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSH-GVTFTGNELEGGHSHPRV-- 113
S R+ DTI++ K +E++ + + S A +L + + GGHS R
Sbjct: 66 SPRLFEDDTIKSAKGKGVQELMAKLANDSPLAIEWLKNEFDLKLDLLAQLGGHSVARTHR 125
Query: 114 --------FTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL---NGE 162
F I S ++ + E + +N + V +I K+G ++ V NGE
Sbjct: 126 SSGKLPPGFEIVSALSNNLKKLAETKPELVKIN-LDSKVVDIHEKDGSISAVVYEDKNGE 184
Query: 163 --LLKFDAVVVATGGFS---GLYRFTAGVKENIGLLIGD---------LALKGVPLRDME 208
++ + VV +GGF + + A N+ G L G L DM+
Sbjct: 185 KHMVSANDVVFCSGGFGFSKEMLKEYAPELVNLPTTNGQQTTGDGQRLLQKLGADLIDMD 244
Query: 209 FVQFHPTGFIGRRT------YLITEAVRGAGAKLVTG-DGERFVNELETRDVVARAIY-- 259
+Q HPTGFI +L E++RG G L+ G RFVNEL TRDVV AI
Sbjct: 245 QIQVHPTGFIDPNDRSSSWKFLAAESLRGLGGILLNPITGRRFVNELTTRDVVTAAIQKV 304
Query: 260 -------LKMLEGKGVFLDARGIEDF-----------------KDRFPYVYSVLKKE--- 292
++ G+ ++ D + DF + P + L +E
Sbjct: 305 CPQEDNRALLVMGEKMYTDLKNNLDFYMFKKLVQKLTLSQVVSEYNLPITVAQLCEELQT 364
Query: 293 ------GIDP----------GKDLIP--------VTPVAHYTMGGISVDIFYRT------ 322
DP G D+ P VTPV H+TMGG +++ +
Sbjct: 365 YSSFTTKADPLGRTVILNEFGSDVTPETVVFIGEVTPVVHFTMGGARINVKAQVIGKNDE 424
Query: 323 -RIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE 366
++GLYA GE S G HGANRL +SLLECVV G A +I +
Sbjct: 425 RLLKGLYAAGE-VSGGVHGANRLGGSSLLECVVFGRTAAESIAND 468
>pir||JC5123 fumarate reductase (NADH) (EC 1.3.1.6) - yeast (Saccharomyces
cerevisiae)
Length = 470
Score = 105 bits (260), Expect = 1e-21
Identities = 135/465 (29%), Positives = 195/465 (41%), Gaps = 106/465 (22%)
Query: 6 VGIVGGGLAGLVAAISLVEK-GVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG-------D 56
V ++G GLAGL AA LV K + V+I S NS A +GI E D
Sbjct: 6 VVVIGTGLAGLAAANELVNKYNIPVTIRQKASSIGGNSIKASSGINGACTETQRHFHIED 65
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSH-GVTFTGNELEGGHSHPRV-- 113
S R+ DTI++ K +E++ + + S A +L + + GGHS R
Sbjct: 66 SPRLFEDDTIKSAKGKGVQELMAKLANDSPLAIEWLKNEFDLKLDLLAQLGGHSVARTHR 125
Query: 114 --------FTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL---NGE 162
F I S ++ + E + +N + V +I K+G ++ V NGE
Sbjct: 126 SSGKLPPGFEIVSALSNNLKKLAETKPELVKIN-LDSKVVDIHEKDGSISAVVYEDKNGE 184
Query: 163 --LLKFDAVVVATGGFS---GLYRFTAGVKENIGLLIGD---------LALKGVPLRDME 208
++ + VV +GGF + + A N+ G L G L DM+
Sbjct: 185 KHMVSANDVVFCSGGFGFSKEMLKEYAPELVNLPTTNGQQTTGDGQRLLQKLGADLIDMD 244
Query: 209 FVQFHPTGFIGRRT------YLITEAVRGAGAKLVTG-DGERFVNELETRDVVARAIY-- 259
+Q HPTGFI +L E++RG G L+ G+RFVNEL TRDVV AI
Sbjct: 245 QIQVHPTGFIDPNDRSSSWKFLAAESLRGLGGILLNPITGKRFVNELTTRDVVTAAIQKV 304
Query: 260 -------LKMLEGKGVFLDARGIEDF-----------------KDRFPYVYSVLKKE--- 292
++ G+ ++ D + DF + P + L +E
Sbjct: 305 CPQEDNRALLVMGEKMYTDLKNNLDFYMFKKLVQKLTLSQVVSEYNLPITVAQLCEELQT 364
Query: 293 ------GIDP----------GKDLIP--------VTPVAHYTMGGISVDIFYRT------ 322
DP G D+ P VTPV H+TMGG +++ +
Sbjct: 365 YSSFTTKADPLGRTVILNEFGSDVTPETVVFIGEVTPVVHFTMGGARINVKAQVIGKNDE 424
Query: 323 -RIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE 366
++GLYA GE S G HGANRL +SLLECVV G A +I +
Sbjct: 425 RLLKGLYAAGE-VSGGVHGANRLGGSSLLECVVFGRTAAESIAND 468
>emb|CAB63172.1| (AL133469) putative reductase flavoprotein subunit [Streptomyces
coelicolor A3(2)]
Length = 649
Score = 104 bits (258), Expect = 2e-21
Identities = 134/556 (24%), Positives = 228/556 (40%), Gaps = 122/556 (21%)
Query: 8 IVGGGLAGLVAAISLVEKGVDVS--IIGPKSKDSNSYLAQAGIAFPLV---EGDSIRIHV 62
+VG GLAG A +L E+G V + ++S AQ GI +GDSI
Sbjct: 49 VVGTGLAGGSAGATLAEQGYHVVQFCYQDSPRRAHSIAAQGGINAAKNYRNDGDSIHRLF 108
Query: 63 LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---GNELE----GGHSHPRVFT 115
DT++ G + + E V + S E V+ GV F G L+ GG R F
Sbjct: 109 YDTVKGGDFRSRESNVHRLAQISVEIIDQCVAQGVPFAREYGGLLDTRSFGGVQVSRTFY 168
Query: 116 IKSETGKHVI-------------PILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGE 162
+ +TG+ ++ +E HAR ++ + V+ G G +A + G+
Sbjct: 169 ARGQTGQQLLLGAYQALSRQIAAGTIEMHARTEMLDLI--VVD--GRARGIVARDLVTGK 224
Query: 163 LLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT----- 215
+ + DAVV+A+GG+ ++ + + + +G + F Q HPT
Sbjct: 225 IDTYYADAVVLASGGYGNVFYLSTNAMNSNATAVWRAHRRGAYFANPCFTQIHPTCIPRT 284
Query: 216 GFIGRRTYLITEAVRGAG-------------AKLVTGDGERFVNE--------LETRDVV 254
G + L++E++R G A + D + E L RD+
Sbjct: 285 GDHQSKLTLMSESLRNDGRIWVPKAKGDDRPANKIPEDERDYYLERIYPSFGNLVPRDIA 344
Query: 255 ARAIYLKMLEGKGVFLDARGIE-DFKD------------RFPYVYSVLKK-EGIDPGKDL 300
+RA EG+GV +G+ DF D ++ ++ + ++ DP +
Sbjct: 345 SRAAKNVCDEGRGVGPGGQGVYLDFADAIKRMGRKAVEAKYGNLFDMYQRITDEDPYRVP 404
Query: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
+ + P HYTMGG+ VD +T + GL+AIGEA + HGANRL +++L++ + G V
Sbjct: 405 MRIYPAVHYTMGGLWVDYDLQTTVPGLFAIGEANFSD-HGANRLGASALMQGLADGYFVL 463
Query: 361 RTILREEPKRGA------NDAPYNFDELGDVD--------------------SIREIMWN 394
+ + R +D P + L + + + E+MW
Sbjct: 464 PATINDYLARNPLGDDVDDDHPVVQEVLAETEDRLNLLLSVDGDRTPDSFHRELGELMWE 523
Query: 395 HAGIVRDKSSLLEGLKKLEGVEAD--QRLKV----------------------VAKAVLT 430
G+ R S L + L+++ + + +R+KV +A+ +
Sbjct: 524 FCGMARTDSGLRKALERIPQIREEFWRRIKVPGTGEEFNQSLEKANRIVDYLELAELMCL 583
Query: 431 LALEREESRGSHYRRD 446
AL R ES G H+R +
Sbjct: 584 DALHRAESCGGHFREE 599
>pir||T43862 FAD flavoprotein oxidase [imported] - Clostridium perfringens
>gi|4240000|dbj|BAA74785.1| (AB017186) FAD flavoprotein
oxidase [Clostridium perfringens]
Length = 541
Score = 104 bits (256), Expect = 3e-21
Identities = 136/520 (26%), Positives = 217/520 (41%), Gaps = 73/520 (14%)
Query: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNS--YLAQAGIAFPLVEGDSIRI 60
+ +V ++G G+AG++AAI G V I + S S Y G+ E +
Sbjct: 12 ECDVFVMGAGIAGIMAAIEASNNGQKVIISSSSNIFSGSSFYPGTWGLGLIGPEDRNDEE 71
Query: 61 HVLDTIR-AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKS- 118
+ TI+ G I DEE+V + + L GV G F K+
Sbjct: 72 DLAKTIKKVGCNIVDEELVETFVKNINPSIDLLKEMGVKLKEANNSGEKEFIPCFDHKNR 131
Query: 119 -------ETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNG-----ELLKF 166
E+ K V+ K L F V EI ++ K+ GV L E +K
Sbjct: 132 NWNGILFESAKKVLDHKLKSNEVLEYPFSE--VIEIVKEDNKIIGVILINSLNKLEFIKC 189
Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALK-GVPLRDMEFVQFHPTGFI------- 218
A+V+A+GG GL+++ + G+ LALK G L ++EF+Q P G+I
Sbjct: 190 KALVIASGGIGGLFKYRLNTTDITGMGQA-LALKAGCNLTNIEFMQMMP-GYIKPCPKTI 247
Query: 219 -GRRTYLITEAVRGAGAKLVTGDGERFVNELETRDV------------VARAIYLKMLEG 265
+T+ EA R + V D E +LE R + AI+ + ++
Sbjct: 248 FNEKTFKYIEA-RNEEGEDVFKDIENLREKLEKRSTYGPFTSRLDSKDIDYAIFKEFMKN 306
Query: 266 KGVFLDARGIEDFKDRFPYVYSV----LKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYR 321
K + R + K+ P V LK+ D I + H GGIS++ +
Sbjct: 307 KNG-VTVRYKDSLKNNMPEFIEVYFKWLKENKHLTPDDEINIGIFFHAANGGISINKWAE 365
Query: 322 TRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAP----- 376
T++ GL+A GE + G HGA+R+ S +V G ++ R +G ++
Sbjct: 366 TKVDGLFAAGEC-TGGMHGADRIGGLSTANGLVFGKIAGKSASRYASSKGLSEKEEVEFE 424
Query: 377 -YNFDELGD-VDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEA---------------DQ 419
Y + GD + ++EIM+ +A I + + + L KLE +
Sbjct: 425 AYEIEGAGDLILEVQEIMFKNAMIEKSEVGVKNSLLKLEEISKGFVYKKEVNMENLRNSY 484
Query: 420 RLK---VVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
RL+ ++ KA+L R+ESRGSHYR D+P K ++
Sbjct: 485 RLENNILLCKAILKAIDLRKESRGSHYRYDYPKANKNMDK 524
>gb|AAC02811.1| (U76909) succinate dehydrogenase flavoprotein subunit [Rickettsia
sp.]
Length = 297
Score = 96.7 bits (237), Expect = 5e-19
Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 34/244 (13%)
Query: 56 DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEG--------- 106
D R H+ DT++ ++ D++ + + + +A L +GV F+ E EG
Sbjct: 12 DDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTE-EGKIYQRPFGG 70
Query: 107 -------GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVF 158
G + R TG ++ L + + + V F + F ++ +++G+ GV
Sbjct: 71 MTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLMEDGECRGVV 130
Query: 159 L----NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALK-GVPLRDMEFVQ 211
+G L F A VV+ATGG+ Y F+A G +A++ G+PL+DMEFVQ
Sbjct: 131 AWNLDDGSLHCFRAHNVVLATGGYGRAY-FSATSAHTCTGDGGGMAIRAGLPLQDMEFVQ 189
Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLE 264
FHPTG I LITE RG G LV +GERF+ +L +RDVV+RA+ +++ E
Sbjct: 190 FHPTG-IYSAGCLITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIRE 248
Query: 265 GKGV 268
G+GV
Sbjct: 249 GRGV 252
>emb|CAB37062.1| (AJ236923) ifc3 protein [Shewanella frigidimarina]
Length = 588
Score = 95.6 bits (234), Expect = 1e-18
Identities = 114/437 (26%), Positives = 182/437 (41%), Gaps = 92/437 (21%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSII------GPKSKDSNSYLAQAGIAFPLVEG--D 56
+V +VG G AG A+++ + G +V ++ G S S + G G D
Sbjct: 145 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVED 204
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTI 116
+ + D ++ G+ ND ++V + +S + +L S G + GG R
Sbjct: 205 KVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRP 264
Query: 117 KS--ETGKHVIPILEKHARELGVN------FVRGFVEE----IG-IKNGKLAGVFLNGEL 163
+G +I L K A+E G++ V+ V + +G + +GK G ++ G
Sbjct: 265 HGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA- 323
Query: 164 LKFDAVVVATGGFS------GLYRFTAG--VKENIGLLIGDLALK----GVPLRDMEFVQ 211
+VV+ATGG+ YR T N GD L G + D+++VQ
Sbjct: 324 ---KSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQ 380
Query: 212 FHPTGFIGRRT-YLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL 270
HPT +G+ + LI+E VRG GA +V DG RF++EL TRD + AI + + +
Sbjct: 381 AHPT--VGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIF 438
Query: 271 D---------ARGIEDFKDRF--PYVYSVLKKEG----------------IDPGKD---- 299
D RG + + + V + K G + GKD
Sbjct: 439 DNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFG 498
Query: 300 --------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGFH 339
+ V P H+TMGG++++ I GL+A GE + G H
Sbjct: 499 RADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGE-VTGGVH 557
Query: 340 GANRLASNSLLECVVSG 356
G NRL N++ + VV G
Sbjct: 558 GYNRLGGNAIADTVVFG 574
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
>gi|11514095|pdb|1QO8|D Chain D, The Structure Of The
Open Conformation Of A Flavocytochrome C3 Fumarate
Reductase
Length = 566
Score = 95.6 bits (234), Expect = 1e-18
Identities = 114/437 (26%), Positives = 182/437 (41%), Gaps = 92/437 (21%)
Query: 5 EVGIVGGGLAGLVAAISLVEKGVDVSII------GPKSKDSNSYLAQAGIAFPLVEG--D 56
+V +VG G AG A+++ + G +V ++ G S S + G G D
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVED 182
Query: 57 SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTI 116
+ + D ++ G+ ND ++V + +S + +L S G + GG R
Sbjct: 183 KVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRP 242
Query: 117 KS--ETGKHVIPILEKHARELGVN------FVRGFVEE----IG-IKNGKLAGVFLNGEL 163
+G +I L K A+E G++ V+ V + +G + +GK G ++ G
Sbjct: 243 HGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA- 301
Query: 164 LKFDAVVVATGGFS------GLYRFTAG--VKENIGLLIGDLALK----GVPLRDMEFVQ 211
+VV+ATGG+ YR T N GD L G + D+++VQ
Sbjct: 302 ---KSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQ 358
Query: 212 FHPTGFIGRRT-YLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL 270
HPT +G+ + LI+E VRG GA +V DG RF++EL TRD + AI + + +
Sbjct: 359 AHPT--VGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIF 416
Query: 271 D---------ARGIEDFKDRF--PYVYSVLKKEG----------------IDPGKD---- 299
D RG + + + V + K G + GKD
Sbjct: 417 DNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFG 476
Query: 300 --------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGFH 339
+ V P H+TMGG++++ I GL+A GE + G H
Sbjct: 477 RADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGE-VTGGVH 535
Query: 340 GANRLASNSLLECVVSG 356
G NRL N++ + VV G
Sbjct: 536 GYNRLGGNAIADTVVFG 552
>pir||S21302 succinate dehydrogenase (EC 1.3.99.1) flavoprotein - human
(fragment) >gi|36643|emb|CAA37886.1| (X53943) succinate
dehydrogenase flavoprotein subunit [Homo sapiens]
Length = 377
Score = 88.9 bits (217), Expect = 1e-16
Identities = 95/347 (27%), Positives = 150/347 (42%), Gaps = 71/347 (20%)
Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR-RTYLI 225
DAV++ATGG ++ T N G + +G + EF+Q HPT G + L+
Sbjct: 32 DAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLM 91
Query: 226 TEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK-GVFLDARG 274
+E+ RG G ++ T G F+ E L RD+ R I+ + K G+ +
Sbjct: 92 SESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDMPTREIFDVCINQKLGINGENMV 151
Query: 275 IEDFKDRFPYVYSVL---------KKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIR 325
D + P+ V K G DP K + + P HY+MGG+ VD T I+
Sbjct: 152 YLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIK 211
Query: 326 GLYAIGEAASNGFHGANRLASNSLLECV-------------VSGLEVARTILREE--PKR 370
GL+A GE + HG NRL +NSLL + +S ++ + T + E KR
Sbjct: 212 GLFAAGECDFSQ-HGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKR 270
Query: 371 GANDAPYNFDEL----GDVDSIR------EIMWNHAGIVRDKSSLLEG-------LKKLE 413
A + FD+L G ++ + EIM + +VR+ LLE +K+ E
Sbjct: 271 KAEEQE-RFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYE 329
Query: 414 GVEADQ----------------RLKVVAKAVLTLALEREESRGSHYR 444
++ + + V+A+ + A R ESR +HY+
Sbjct: 330 DIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRAAHYK 376
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171753379
Number of Sequences: 2977
Number of extensions: 7611956
Number of successful extensions: 19618
Number of sequences better than 1.0e-10: 117
Number of HSP's better than 0.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 18908
Number of HSP's gapped (non-prelim): 164
length of query: 464
length of database: 189,106,746
effective HSP length: 56
effective length of query: 408
effective length of database: 155,591,474
effective search space: 63481321392
effective search space used: 63481321392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)