BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2343 (nadB) DE:L-ASPARTATE OXIDASE (EC 1.4.3.16)
(QUINOLINATE SYNTHETASE B)
         (464 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75186 L-aspartate oxidase (EC 1.4.3.16) PAB2343 - Pyrococc...   924  0.0
pir||D71219 probable L-aspartate oxidase - Pyrococcus horikoshii...   809  0.0
pir||B70368 L-aspartate oxidase - Aquifex aeolicus >gi|2983344|g...   295  6e-79
gb|AAK41268.1| Aspartate oxidase (nadB) [Sulfolobus solfataricus]     258  8e-68
pir||A82621 L-aspartate oxidase XF1924 [imported] - Xylella fast...   227  2e-58
pir||B82074 l-aspartate oxidase VC2469 [imported] - Vibrio chole...   225  7e-58
gi|11498289 succinate dehydrogenase, flavoprotein subunit A (sdh...   224  2e-57
pir||S77416 succinate dehydrogenase flavoprotein homolog - Synec...   224  2e-57
sp|P38032|NADB_BACSU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   222  8e-57
pir||OXECLD L-aspartate oxidase (EC 1.4.3.16) nadB [validated] -...   221  1e-56
emb|CAA31217.1| (X12714) L-aspartate oxidase (AA 1 - 540) [Esche...   220  2e-56
sp|P10902|NADB_ECOLI L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   220  2e-56
sp|P74562|NADB_SYNY3 L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   219  4e-56
sp|Q51363|NADB_PSEAE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   219  7e-56
sp|O06595|NADB_MYCTU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   216  4e-55
dbj|BAB04937.1| (AP001511) L-aspartate oxidase [Bacillus halodur...   212  6e-54
pir||T36393 L-aspartate oxidase - Streptomyces coelicolor >gi|45...   208  1e-52
pir||C70353 succinate dehydrogenase (EC 1.3.99.1) flavoprotein -...   208  1e-52
pir||F72691 probable fumarate reductase flavoprotein subunit APE...   205  9e-52
gb|AAK42509.1| Succinate dehydrogenase subunit A (sdhA) [Sulfolo...   200  3e-50
emb|CAC04215.1| (AL391515) putative oxidoreductase [Streptomyces...   198  1e-49
pir||D69067 succinate dehydrogenase, flavoprotein subunit - Meth...   195  1e-48
pir||D81881 probable succinate dehydrogenase (EC 1.3.99.1) flavo...   193  4e-48
pir||F81138 succinate dehydrogenase, flavoprotein chain NMB0950 ...   193  4e-48
pir||T50536 succinate dehydrogenase (EC 1.3.99.1) chain A [valid...   190  2e-47
sp|Q60356|Y033_METJA HYPOTHETICAL FAD FLAVOPROTEIN OXIDASE MJ003...   190  2e-47
sp|Q49617|NADB_MYCLE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   190  3e-47
pir||T45162 succinate dehydrogenase (EC 1.3.99.1) chain A [impor...   190  3e-47
sp|P44894|FRDA_HAEIN FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi...   189  6e-47
emb|CAA04398.1| (AJ000941) Thiol:fumarate reductase subunit A [M...   188  1e-46
pir||H81203 l-aspartate oxidase NMB0392 [imported] - Neisseria m...   188  1e-46
emb|CAC12130.1| (AL445066) probable fumarate reductase (frdA) [T...   187  2e-46
gb|AAG22257.1| (AE003796) Scs-fp gene product [Drosophila melano...   187  2e-46
pir||E81780 L-aspartate oxidase (EC 1.4.3.16) NMA2092 [imported]...   186  4e-46
pir||T51421 L-aspartate oxidase-like protein - Arabidopsis thali...   184  2e-45
gb|AAB34901.1| (S78630) succinate-ubiquinone oxidoreductase; fum...   183  3e-45
pir||T15398 hypothetical protein C03G5.1 - Caenorhabditis elegan...   183  3e-45
sp|Q09508|DHSA_CAEEL SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP...   182  6e-45
gb|AAG19651.1| (AE005053) succinate dehydrogenase subunit A; Sdh...   180  2e-44
dbj|BAA84681.1| (AB031741) succinate dehydrogenase [Trypanosoma ...   180  3e-44
dbj|BAA31212.1| (AB015756) succinate dehydrogenase flavoprotein ...   179  5e-44
pir||G75456 succinate dehydrogenase, flavoprotein subunit - Dein...   179  5e-44
pir||E70843 probable flavoprotein subunit of succinate dehydroge...   179  7e-44
pir||T32885 hypothetical protein C34B2.7 - Caenorhabditis elegan...   178  9e-44
gb|AAF21611.1|AF018287_5 (AF018287) SdhA; succinate dehydrogenas...   178  9e-44
gi|4759080 succinate dehydrogenase complex, subunit A, flavoprot...   177  2e-43
sp|P31040|DHSA_HUMAN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP...   177  2e-43
dbj|BAA21636.1| (D30650) flavoprotein subunit of complex II [Asc...   176  6e-43
gb|AAG20080.1| (AE005087) L-aspartate oxidase; NadB [Halobacteri...   176  6e-43
gb|AAD51006.1| (AF171030) succinate dehydrogenase flavoprotein s...   174  2e-42
pir||E83448 succinate dehydrogenase (A subunit) PA1583 [imported...   174  2e-42
sp|P20922|FRDA_PROVU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi...   173  3e-42
gb|AAD01243.1| (AF005272) fumarate reductase flavoprotein subuni...   173  4e-42
sp|P00363|FRDA_ECOLI FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi...   173  5e-42
pdb|1FUM|A Chain A, Structure Of The E. Coli Fumarate Reductase ...   173  5e-42
gb|AAF21045.1|AF211482_1 (AF211482) SdhA [Dictyostelium discoideum]   172  7e-42
gi|6322701 flavoprotein subunit of succinate dehydrogenase; Sdh1...   171  1e-41
gb|AAA23437.1| (J01611) fumarate reductase flavoprotein subunit ...   171  1e-41
pir||F82050 fumarate reductase, flavoprotein chain VC2656 [impor...   171  1e-41
pir||T44962 succinate dehydrogenase chain A homolog [imported] -...   171  2e-41
sp|P51054|DHSA_COXBU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI...   170  3e-41
sp|Q94523|DHSA_DROME SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP...   168  1e-40
emb|CAB89075.1| (AL353872) putative succinate dehydrogenase flav...   168  1e-40
sp|P31038|DHSA_RICPR SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI...   168  2e-40
gb|AAC17942.1| (AF007569) succinate dehydrogenase flavoprotein s...   167  2e-40
pir||T50081 probable succinate dehydrogenase (ubiquinone) (EC 1....   167  2e-40
sp|Q59661|DHSA_PARDE SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI...   167  2e-40
dbj|BAA31215.1| (AB015757) fumarate reductase flavoprotein subun...   166  4e-40
pir||G82118 succinate dehydrogenase, flavoprotein chain VC2089 [...   165  1e-39
gb|AAC72373.1| (AF095938) succinate dehydrogenase Fp subunit [Mu...   164  1e-39
pir||C81388 succinate dehydrogenase (EC 1.3.99.1) flavoprotein C...   163  3e-39
pir||E82728 succinate dehydrogenase, flavoprotein subunit XF1072...   163  3e-39
sp|Q10760|FRDA_MYCTU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi...   163  4e-39
pir||A42792 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) fl...   163  4e-39
sp|P10444|DHSA_ECOLI SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI...   163  4e-39
emb|CAA25487.1| (X00980) succinate dehydrogenase (sdhA) flavopro...   162  7e-39
dbj|BAA13119.1| (D86573) flavoprotein subunit of succinate dehyd...   161  2e-38
gi|6322416 Yjl045wp [Saccharomyces cerevisiae] >gi|1352266|sp|P4...   158  1e-37
pir||T51815 succinate dehydrogenase (EC 1.3.99.1) flavoprotein a...   158  1e-37
emb|CAA54872.1| (X77919) putative succinate dehydrogenase large ...   157  2e-37
gb|AAC72374.1| (AF095939) succinate dehydrogenase Fp subunit [Ga...   157  3e-37
gb|AAD15493.1| (AC006439) putative succinate dehydrogenase flavo...   156  6e-37
pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reducta...   151  1e-35
emb|CAA74087.1| (Y13760) putative flavoprotein subunit [Shewanel...   150  2e-35
sp|Q59767|NADB_RHORU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE...   150  4e-35
pir||C72035 succinate dehydrogenase, flavoprotein chain CP1083 [...   148  2e-34
pir||B81655 succinate dehydrogenase, flavoprotein chain TC0881 [...   147  2e-34
sp|P17412|FRDA_WOLSU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi...   145  8e-34
sp|P31039|DHSA_BOVIN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOP...   145  1e-33
pir||G81384 succinate dehydrogenase (EC 1.3.99.1) flavoprotein C...   143  5e-33
pir||S73049 hypothetical protein L308_F3_120 - Mycobacterium lep...   143  5e-33
pir||T43189 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) fl...   142  7e-33
pir||E71494 probable succinate dehydrogenase - Chlamydia trachom...   140  3e-32
pir||D70939 hypothetical protein Rv0248c - Mycobacterium tubercu...   136  7e-31
dbj|BAB06811.1| (AP001517) succinate dehydrogenase flavoprotein ...   135  9e-31
emb|CAA69872.1| (Y08563) succinate dehydrogenase subunit A [Paen...   129  7e-29
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of...   129  9e-29
gb|AAF49990.1| (AE003543) CG5718 gene product [Drosophila melano...   128  1e-28
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed...   127  2e-28
sp|Q02469|FRDA_SHEFR FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT PRE...   123  3e-27
emb|CAB38558.1| (AJ132010) fumarate reductase flavocytochrome c3...   123  3e-27
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidima...   123  3e-27
pir||T16413 hypothetical protein F48E8.3 - Caenorhabditis elegan...   122  9e-27
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidima...   120  4e-26
pir||A27763 succinate dehydrogenase (EC 1.3.99.1) flavoprotein -...   118  2e-25
gb|AAG12518.1|AC011017_7 (AC011017) L3184.7 [Leishmania major]        115  1e-24
sp|P08065|DHSA_BACSU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNI...   114  2e-24
gi|6320788 Yel047cp [Saccharomyces cerevisiae] >gi|418423|sp|P32...   107  3e-22
pir||JC5123 fumarate reductase (NADH) (EC 1.3.1.6) - yeast (Sacc...   105  1e-21
emb|CAB63172.1| (AL133469) putative reductase flavoprotein subun...   104  2e-21
pir||T43862 FAD flavoprotein oxidase [imported] - Clostridium pe...   104  3e-21
gb|AAC02811.1| (U76909) succinate dehydrogenase flavoprotein sub...    97  5e-19
emb|CAB37062.1| (AJ236923) ifc3 protein [Shewanella frigidimarina]     96  1e-18
pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A ...    96  1e-18
pir||S21302 succinate dehydrogenase (EC 1.3.99.1) flavoprotein -...    89  1e-16

>pir||C75186 L-aspartate oxidase (EC 1.4.3.16) PAB2343 - Pyrococcus abyssi
           (strain Orsay) >gi|5457447|emb|CAB48938.1| (AJ248283)
           L-ASPARTATE OXIDASE (EC 1.4.3.16) (QUINOLINATE
           SYNTHETASE B) [Pyrococcus abyssi]
           Length = 464
           
 Score =  924 bits (2362), Expect = 0.0
 Identities = 464/464 (100%), Positives = 464/464 (100%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
           MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI
Sbjct: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET 120
           HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET
Sbjct: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET 120

Query: 121 GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY 180
           GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY
Sbjct: 121 GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY 180

Query: 181 RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD 240
           RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD
Sbjct: 181 RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD 240

Query: 241 GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL 300
           GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL
Sbjct: 241 GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL 300

Query: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
           IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA
Sbjct: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360

Query: 361 RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR 420
           RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR
Sbjct: 361 RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR 420

Query: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV 464
           LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV
Sbjct: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV 464


>pir||D71219 probable L-aspartate oxidase - Pyrococcus horikoshii
           >gi|3256400|dbj|BAA29083.1| (AP000001) 464aa long
           hypothetical L-aspartate oxidase [Pyrococcus horikoshii]
           Length = 464
           
 Score =  809 bits (2066), Expect = 0.0
 Identities = 392/464 (84%), Positives = 435/464 (93%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
           M++M VGIVGGGLAGL AAI+L EKG DVSIIGP+S DSNSYLAQAGIA PL+EGDSIRI
Sbjct: 1   MMEMRVGIVGGGLAGLTAAIALAEKGFDVSIIGPRSTDSNSYLAQAGIALPLLEGDSIRI 60

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSET 120
           HVLDTI+AGKYINDEE+VWNVISKS+EA+ FL SHGVTFTGNELEGGHS+PR+FTIKSET
Sbjct: 61  HVLDTIKAGKYINDEEIVWNVISKSSEAHDFLTSHGVTFTGNELEGGHSYPRIFTIKSET 120

Query: 121 GKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATGGFSGLY 180
           GKH+IPILEKHAREL VNF+RGFVEEIGI NGKLAGVFL GELLKFDAVV+A GGFSGLY
Sbjct: 121 GKHIIPILEKHARELDVNFIRGFVEEIGINNGKLAGVFLQGELLKFDAVVIAAGGFSGLY 180

Query: 181 RFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGD 240
           RFTAGVK NIGLLIGD+ALKGVPLRDMEFVQFHPTGFIG+RTYLITEAVRGAGAKLVTGD
Sbjct: 181 RFTAGVKNNIGLLIGDVALKGVPLRDMEFVQFHPTGFIGKRTYLITEAVRGAGAKLVTGD 240

Query: 241 GERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDPGKDL 300
           GERFVNELETRD+VARAIY+KMLEGKGVFLDARGIE+FKDRFPY+YSVL+ EGI+P KDL
Sbjct: 241 GERFVNELETRDIVARAIYMKMLEGKGVFLDARGIENFKDRFPYIYSVLRGEGINPEKDL 300

Query: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
           IP+TPVAHYT+GGISVD FYRTRI+GLYAIGE+A NGFHGANRLASNSLLECVVSGLEVA
Sbjct: 301 IPITPVAHYTIGGISVDAFYRTRIKGLYAIGESACNGFHGANRLASNSLLECVVSGLEVA 360

Query: 361 RTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR 420
           RTI RE+PKR  NDAPY+F+ELGDVDSIRE++WNHAGIVRD+ SL EGL+KL+ +E D+R
Sbjct: 361 RTISREKPKREVNDAPYSFNELGDVDSIREVLWNHAGIVRDEWSLREGLRKLKEIEVDER 420

Query: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPSFFHLNV 464
           LK+VAKAV+  AL+REESRG+HYR+D+PFMRKEFE  SFF+ NV
Sbjct: 421 LKLVAKAVIISALKREESRGAHYRKDYPFMRKEFEHSSFFYPNV 464


>pir||B70368 L-aspartate oxidase - Aquifex aeolicus >gi|2983344|gb|AAC06932.1|
           (AE000707) L-aspartate oxidase [Aquifex aeolicus]
           Length = 510
           
 Score =  295 bits (748), Expect = 6e-79
 Identities = 186/494 (37%), Positives = 272/494 (54%), Gaps = 50/494 (10%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
           + +V I G G+ GL  AISL E G++  I+       N+Y +Q GIA  ++  DS  +H 
Sbjct: 16  EAKVLICGSGIGGLATAISLKELGIEPLIL--TRGIGNTYYSQGGIAAAVLPDDSPYLHY 73

Query: 63  LDTIRAGKYINDE--------EVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF 114
            DT+RAG+Y+N E        E ++ ++        F   +G  F    LEGGHS PRV 
Sbjct: 74  CDTLRAGRYLNHELHTKLLTYEGIFRILDLERWGVDFDKKNG--FYETTLEGGHSKPRVL 131

Query: 115 TIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGE----LLKFDAVV 170
            +K  TG+ +   L K   ELG+  + G ++EI I+   + GV  + E     ++   ++
Sbjct: 132 KVKDYTGREIYTKLLKKTEELGIKILHGELQEIIIEENGVQGVIYSEEGSLKFIRTPLLI 191

Query: 171 VATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVR 230
           +ATGG + +Y +T+  K+  G  IG     G  +++ EFVQFHPT   G    LI+EAVR
Sbjct: 192 LATGGAASMYYYTSNPKKVRGDAIGIAFRMGATVKNPEFVQFHPTVLKGTNL-LISEAVR 250

Query: 231 GAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDARGIED----FKDRFPYVY 286
           G GA LV   GERFVNEL  RD VARAIY ++  G+ V+LD R +       ++RFP +Y
Sbjct: 251 GEGAILVNDRGERFVNELLPRDEVARAIYNQIKRGREVYLDLRPVAQKGIKIEERFPTIY 310

Query: 287 SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLAS 346
           S L++ G DP ++ +P+ P AHY +GGI VD   RT I+GLYA+GE +  G HGANRLAS
Sbjct: 311 SFLRERGYDPYREPVPIIPAAHYYIGGIEVDDRGRTSIQGLYAVGECSCTGIHGANRLAS 370

Query: 347 NSLLECVVSGLEVARTILRE-----------EPKRGANDAPYNFDELGDVDSIREIMWNH 395
           NSLLE VV G   A  +  +             +R  +D P     LG ++ ++++MWN+
Sbjct: 371 NSLLEGVVFGHRTAYQVYLDLKILKPSKVNFRSERAGSDKP----NLG-IEELKKLMWNY 425

Query: 396 AGIVRDKSSLLEGLKKLEGVEADQR-------------LKVVAKAVLTLALEREESRGSH 442
            G+ RD+  L    K++  V +  +             + +VA   +  AL R+ESRG H
Sbjct: 426 VGLERDEEGLTYVKKRILSVLSQAKHWEPTPQNRQLYDILLVALCTVEGALMRKESRGVH 485

Query: 443 YRRDFPFMRKEFER 456
           YR+D+P  R+ + R
Sbjct: 486 YRKDYPTEREVYRR 499


>gb|AAK41268.1| Aspartate oxidase (nadB) [Sulfolobus solfataricus]
           Length = 487
           
 Score =  258 bits (653), Expect = 8e-68
 Identities = 182/463 (39%), Positives = 249/463 (53%), Gaps = 33/463 (7%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLDTIR 67
           I G GLAGL AAISL + G  V+II  K    +SY A+ GIA  +   DS  +H +DT+ 
Sbjct: 19  IFGSGLAGLSAAISLHKSGYKVTIISKKINGGSSYWAKGGIAAAVGNDDSPELHKIDTLE 78

Query: 68  AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-ELEGGHSHPRVFTIKSETGKHVIP 126
            G  + D + V  V  +     S +   G  F  +  LEGGHS  R+     +TG+ +  
Sbjct: 79  VGDGLCDSKTVDYVTREIRYVVSTVEKWGFKFDDDLRLEGGHSKRRILHKTDDTGREITN 138

Query: 127 ILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFTA 184
            L   A++ G+N +   +  + +K+GK+AG F+  +   FDA  VV+ATGG+  L++FT+
Sbjct: 139 FLLNLAKKKGINLIEDKLLALKVKDGKVAG-FITEKGGSFDAEKVVLATGGYGYLFKFTS 197

Query: 185 GVKENIGLLIGDLALKGVPLRDMEFVQFHPT--GFIGRRTYLITEAVRGAGAKLVTGDGE 242
               NIG  I      G  + D EFVQFHPT   F G+  YL+TE +RG GA LV    E
Sbjct: 198 NPSTNIGDGIAIAFKAGALVSDTEFVQFHPTVTTFDGQ-AYLLTETLRGEGAILVNERNE 256

Query: 243 RFV------NELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKKEGIDP 296
           RFV       EL  RDV++RAIY +  +G  V++D   IEDF  +FP + + +K+ G   
Sbjct: 257 RFVFKYDSRGELAPRDVLSRAIYDQYKKGHTVYIDLSPIEDFDRKFPILSNYVKRYG--- 313

Query: 297 GKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG 356
               + V P  HYT+GGI V+    + I+GLYAIGE    G HGANRLASNSL E +V G
Sbjct: 314 --KRLQVFPGVHYTIGGIRVNTRGESNIKGLYAIGEVTDTGLHGANRLASNSLAEDLVYG 371

Query: 357 LEVARTILR------EEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLLEGLK 410
           + + R I        ++ K        N      ++ IRE  WN+ GIVR+     EGL 
Sbjct: 372 VNLVRYIDNWEGLSIDDVKEVIEVRLRNSSNRLSLEEIREYNWNYLGIVRNG----EGLD 427

Query: 411 KLEGV-EADQRLKVVAKAVLTL----ALEREESRGSHYRRDFP 448
           KL  + E++      A  V  L    AL R ESRG+HYR D+P
Sbjct: 428 KLVKIYESNDTFNDNASLVSLLSAKGALLRTESRGAHYREDYP 470


>pir||A82621 L-aspartate oxidase XF1924 [imported] - Xylella fastidiosa  (strain
           9a5c) >gi|9107024|gb|AAF84730.1|AE004012_4 (AE004012)
           L-aspartate oxidase [Xylella fastidiosa]
           Length = 512
           
 Score =  227 bits (573), Expect = 2e-58
 Identities = 166/476 (34%), Positives = 234/476 (48%), Gaps = 28/476 (5%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLDTIR 67
           IVG GLAGL+AA+++  +   +        +++S  AQ G++  L   D+  +H+ DT+ 
Sbjct: 14  IVGSGLAGLIAALTMSPEPSVLVTRSALGAETSSAWAQGGMSVSLSPDDNPSLHLADTLA 73

Query: 68  AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFTIKSE- 119
           AG  + D     ++I ++ +A+  L   G+ F  +        LE  HS  R+  +  + 
Sbjct: 74  AGDGLCDAVAAESIILEALDAFHVLQHFGIHFDQDSNGHLALGLEAAHSRRRIVHVGGDR 133

Query: 120 TGKHVIPILEKHA-RELGVNFVRGF-VEEIGIKNGKLAGVFLNGE----LLKFDAVVVAT 173
           +G  ++  L      +  +  + G     I + +  + G+ L       +L    +++AT
Sbjct: 134 SGTAIVQALTACVLNDPSITVLEGLEARHILMADNVVCGLLLANPTSEIVLPSSRILLAT 193

Query: 174 GGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI--GRRTYLITEAVRG 231
           GG  GLY  T     N G  I   A  G  L DMEFVQFHPT      R   L++EAVRG
Sbjct: 194 GGIGGLYDATTNPVSNFGQGIAMAARAGAVLADMEFVQFHPTALHCHNRPLALVSEAVRG 253

Query: 232 AGAKLVTGDGERFVN-----ELETRDVVARAIYLKMLEGKGVFLDARGI--EDFKDRFPY 284
            GA L+   GERF+      EL  R++VA+AI  ++  G  VFLDAR      F  RFP 
Sbjct: 254 EGAVLINERGERFMADIPGAELAARNIVAQAISAEITRGGQVFLDARQALGARFSTRFPT 313

Query: 285 VYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRL 344
           + ++  K GIDP    IPV P AHY MGGI++D   R+ I GL+  GEAAS G HGANRL
Sbjct: 314 ITALCHKVGIDPVHMPIPVCPAAHYHMGGIAIDHQGRSSIPGLWVAGEAASTGLHGANRL 373

Query: 345 ASNSLLECVVSGLEVARTILREEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSS 404
           ASNSLLE VV G   AR I            P    +  D   IR I+    G++R  + 
Sbjct: 374 ASNSLLEAVVMGTRAARDITFHNTPHPLGTIPIT-PKKPDTTLIRPIVSQCLGVLRHAAD 432

Query: 405 LLEGLKKL----EGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
           +   +  L    EG E      +VA  +   A  R ESRG+H R DFP      +R
Sbjct: 433 MHRAIAALLPFVEGEEESSDPAIVALLIAIFAYLRTESRGAHARTDFPLKHDTTQR 488


>pir||B82074 l-aspartate oxidase VC2469 [imported] - Vibrio cholerae  (group O1
           strain N16961) >gi|9657047|gb|AAF95611.1| (AE004316)
           l-aspartate oxidase [Vibrio cholerae]
           Length = 550
           
 Score =  225 bits (568), Expect = 7e-58
 Identities = 173/518 (33%), Positives = 257/518 (49%), Gaps = 81/518 (15%)

Query: 5   EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
           +V ++G G AGL  A+ + + G V V   GP+S+ +  Y AQ GIA    E DSI  HV 
Sbjct: 25  DVLVIGSGAAGLSLALQVAQYGKVIVLSKGPRSEGATFY-AQGGIAAVFDESDSIESHVQ 83

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE------------LEGGHSHP 111
           DT+ AG  I DE+ V  +   + E   +L+  GV F   E             EGGHSH 
Sbjct: 84  DTLIAGAGICDEQTVRFIAEHAKECVQWLIDGGVPFDKEEDSDNDHPRYHLTREGGHSHR 143

Query: 112 RVFTIKSETGKHV-------------IPILEKH-ARELGVNFVRGFVEEIGIKNGKLAGV 157
           R+      TG  +             I +LE+H A +L         ++IG    K+ G 
Sbjct: 144 RILHAADATGMAMQTSLQDNAHNHPNITVLERHNALDLITE------DKIGGDANKVVGA 197

Query: 158 FL------NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQ 211
           ++      + E ++   VV+ATGG S +Y++T+    + G  I      G  + ++EF Q
Sbjct: 198 YVWNRNAEHVETIRAKFVVLATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQ 257

Query: 212 FHPTGFIG--RRTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAI--YLK 261
           FHPT       R +L+TEA+RG GA L   DG RF+       EL  RD+VARAI   +K
Sbjct: 258 FHPTCLYHPEARNFLLTEALRGEGAYLRRPDGSRFMPDFDERAELAPRDIVARAIDFEMK 317

Query: 262 MLEGKGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
            L    ++LD   +  +  +  FP +YS L   GID  K+ IP+ P AHYT GG+ V+  
Sbjct: 318 RLGADCMYLDISHKPADFIEKHFPTIYSRLMDLGIDMTKEPIPIVPAAHYTCGGVMVNPQ 377

Query: 320 YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAPYNF 379
            +T ++ LYAIGE +  G HGANR+ASNSLLECVV     ++ I+ + P     ++   +
Sbjct: 378 GQTDLKQLYAIGEVSYTGLHGANRMASNSLLECVVYAWSASQDIIAQLPNASMPESLPAW 437

Query: 380 DELGDVDSIREI------------MWNHAGIVRDKSSLLEGLKKLEGVEAD--------- 418
           DE     S  E+            MW++ GIVR    L   +++++ ++ +         
Sbjct: 438 DESQVTCSDEEVVLQHNWHELRLFMWDYMGIVRTNKRLERAMRRIQLLQQETHEYYSNFR 497

Query: 419 --------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                   + L  VA+ ++  A++R+ESRG HY  D+P
Sbjct: 498 VSNNLLEMRNLLQVAELMVRCAMQRKESRGLHYTLDYP 535


>gi|11498289 succinate dehydrogenase, flavoprotein subunit A (sdhA)
           [Archaeoglobus fulgidus] >gi|7431672|pir||A69335
           succinate dehydrogenase (EC 1.3.99.1) flavoprotein -
           Archaeoglobus fulgidus >gi|2649933|gb|AAB90557.1|
           (AE001057) succinate dehydrogenase, flavoprotein subunit
           A (sdhA) [Archaeoglobus fulgidus]
           Length = 563
           
 Score =  224 bits (564), Expect = 2e-57
 Identities = 177/528 (33%), Positives = 264/528 (49%), Gaps = 85/528 (16%)

Query: 2   IDMEVGIVGGGLAGLVAAISLVEKGVDVSI-IGPKSKD--SNSYLAQAGIAFPLVEGDSI 58
           ++ ++ IVG G+AG+ AAI+  EK   +SI +  K+     +S  A+ G A  L EGDS 
Sbjct: 1   MEHDIVIVGAGIAGMRAAIAAAEKSRKLSIALIAKTYPIRCHSVCAEGGTAAVLREGDSF 60

Query: 59  RIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP 111
            +H  DT++   ++ D++ V   + +  +    L + G  ++ NE         GGHS  
Sbjct: 61  DLHAWDTVKGADFLADQDAVEFFVRECPKEIIRLENWGCPWSRNEDGTIAQRPFGGHSFN 120

Query: 112 RVFTIKSETGKHVIPILEKHARELGVN----FVRGFVEEIGIKNGKLAGV----FLNGEL 163
           R    K  TG H +  L  + R L  +    F   F+  + I+NG + GV       GE+
Sbjct: 121 RATYAKDRTGFHEVHTL--YERMLMYDNVEIFPEYFITNLAIENGAVQGVSAIQLKTGEM 178

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
             F+A  V+ ATGG   LY FT    +  G  +      G+PL+DMEF QFHPTG +   
Sbjct: 179 EFFEAKAVIFATGGAGRLYGFTTYSHQVTGDGLAIAYRNGIPLKDMEFFQFHPTGLVPSG 238

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------- 267
             L+TE  RG G  L+  +GERF+        E+  RDVV+RA++ +++EG+G       
Sbjct: 239 I-LMTEGCRGEGGYLLNKNGERFMKRYAPEKMEIAPRDVVSRAMWTEIIEGRGFEGEYGP 297

Query: 268 -VFLDAR--GIEDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
            + LD R  G E  ++R P +  + +K  G+DP ++ IPV PVAHYTMGGI  ++   T 
Sbjct: 298 YIALDLRHLGEEKIEERLPLIRDAAIKFAGVDPVEEPIPVRPVAHYTMGGIDTNVRCETA 357

Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE---EPKRGANDAPYN-- 378
           ++G +A GE A    HGANRL SNS  EC+V G  VA  +  E   + K+G   A +   
Sbjct: 358 VKGFFAAGECACVSIHGANRLGSNSTAECLVFG-RVAGEVAAEYALKAKQGKISAEFREK 416

Query: 379 -----FDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR--- 420
                FDEL    GD         + E M  +  I R++  L E +KK++ ++   R   
Sbjct: 417 EEKRIFDELLGKSGDESPYQIKKELNETMEANMWIFREEKGLKEAVKKIKELKERYRNVE 476

Query: 421 --------------------LKVVAKAVLTLALEREESRGSHYRRDFP 448
                               +  +A+ V   AL+R+ESRG+HYR D+P
Sbjct: 477 INDKSRGFNTDLTSAIEIGYMLDLAEVVAIGALKRQESRGAHYRLDYP 524


>pir||S77416 succinate dehydrogenase flavoprotein homolog - Synechocystis sp.
           (strain PCC 6803) >gi|1652598|dbj|BAA17519.1| (D90906)
           succinate dehydrogenase flavoprotein subunit
           [Synechocystis sp.]
           Length = 575
           
 Score =  224 bits (564), Expect = 2e-57
 Identities = 176/539 (32%), Positives = 253/539 (46%), Gaps = 94/539 (17%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSI-IGPKSKD--SNSYLAQAGIAFPLVE--- 54
           M++ +V IVGGGLAG  AA+ +     D  + I  K+    S+S  AQ GIA  L     
Sbjct: 1   MLEQDVVIVGGGLAGCRAALEIKRLAPDTKVAIVAKTHPIRSHSVAAQGGIAASLKNVDA 60

Query: 55  GDSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGG 107
            DS   H  DT++   Y+ D++ V  +  ++ E    L   GV F+            GG
Sbjct: 61  EDSWEAHAFDTVKGSDYLADQDAVEILTKEAPEVIIELEHLGVLFSRLPDGKIAQRAFGG 120

Query: 108 HSHPRVFTIKSETGKHVIPILEKHARELGVN-----FVRGFVEEIGIKNGKLAGVFLNG- 161
           HSH R      +TG  ++  L  + R   V      +V   + E G   G +      G 
Sbjct: 121 HSHNRTCYAADKTGHAILHELVNNLRRNKVEIYDEWYVMKLIYEEGEAKGLVMYEIATGR 180

Query: 162 -ELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF--I 218
            E+++  AV+VATGG+  +Y  T+    + G  +   A+ G+PL DMEFVQFHPTG   +
Sbjct: 181 IEIVRAKAVMVATGGYGRVYNTTSNDYASTGDGLAMAAIAGIPLEDMEFVQFHPTGLYPV 240

Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG---- 267
           G    LI+EAVRG GA L+  +G RF+        EL  RD+ +RAI L++  G+G    
Sbjct: 241 G---VLISEAVRGEGAYLINSEGRRFMEDYAPSRMELAPRDITSRAITLEIRAGRGVNAD 297

Query: 268 -------VFLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVD 317
                  V+LD R  G E    R P+ +    +  GID  +  +PV P  HY MGGI V+
Sbjct: 298 GSAGGPYVYLDLRHMGREKIMSRIPFCWEEAHRLVGIDAVEQPMPVRPTVHYCMGGIPVN 357

Query: 318 IFYRTR------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRG 371
              R R        G +A GE A    HG NRL SNSLLECVV G    R+I      R 
Sbjct: 358 TDGRVRKNANELTEGFFAAGECACVSVHGGNRLGSNSLLECVVYGRRTGRSIAEYVQGRS 417

Query: 372 ---ANDAPYNFDELGDVDSI----------------REIMWNHAGIVRDKSSLLEGLKKL 412
               ++A Y  +    +D +                ++ M +H G+ R +S + EGL+++
Sbjct: 418 LPEIDEAVYKTEAQTRIDQLLNQQGTVRINTLRQAFQDCMTSHCGVFRSESFMAEGLEQV 477

Query: 413 EGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
           + ++A                        Q +  V + +LT A++R+ESRGSH R DFP
Sbjct: 478 QNLKAQYGQIFLDDKQPQWNTEVIEALELQSIMAVGELILTSAIQRQESRGSHAREDFP 536


>sp|P38032|NADB_BACSU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|421511|pir||C47071 L-aspartate oxidase (EC 1.4.3.16)
           nadB - Bacillus subtilis >gi|547611|gb|AAA21614.1|
           (M98822) L-aspartate oxidase [Bacillus subtilis]
           >gi|2635252|emb|CAB14747.1| (Z99118) L-aspartate oxidase
           [Bacillus subtilis]
           Length = 531
           
 Score =  222 bits (559), Expect = 8e-57
 Identities = 168/497 (33%), Positives = 244/497 (48%), Gaps = 42/497 (8%)

Query: 6   VGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
           + ++G G A L  A +      +V++I  KS K+SNS  AQ GIA    + DSI  H+ D
Sbjct: 6   IAVIGSGAAALSLAAAF-PPSYEVTVITKKSVKNSNSVYAQGGIAAAYAKDDSIEAHLED 64

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL-------EGGHSHPRVFTIK 117
           T+ AG   N+  +V +V+         L+  G  F  NE        EG HS+ R+F   
Sbjct: 65  TLYAGCGHNNLAIVADVLHDGKMMVQSLLERGFPFDRNERGGVCLGREGAHSYNRIFHAG 124

Query: 118 SE-TGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNG-----ELLKFDAVVV 171
            + TG+ +I  L K               ++ I++G+  GV         ++   D VV+
Sbjct: 125 GDATGRLLIDYLLKRINSKIKLIENETAADLLIEDGRCIGVMTKDSKGRLKVRHADEVVL 184

Query: 172 ATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI--GRRTYLITEAV 229
           A GG   L+          G  +      G  L D+EF QFHPT  +  G    L++EAV
Sbjct: 185 AAGGCGNLFLHHTNDLTVTGDGLSLAYRAGAELTDLEFTQFHPTLLVKNGVSYGLVSEAV 244

Query: 230 RGAGAKLVTGDGERFVNE------LETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFP 283
           RG G  LV  +G R + E      L  RD+V+R I+ +M +G  V++D   I DF+ RFP
Sbjct: 245 RGEGGCLVDENGRRIMAERHPLGDLAPRDIVSRVIHEEMAKGNRVYIDFSAISDFETRFP 304

Query: 284 YVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANR 343
            + ++ +K GID     IPV P  H+ MGG+SV+ +  T + GLYAIGE A +G HGANR
Sbjct: 305 TITAICEKAGIDIHSGKIPVAPGMHFLMGGVSVNRWGETTVPGLYAIGETACSGLHGANR 364

Query: 344 LASNSLLECVVSGLEVARTILREEPKRGANDAPYN---FDELGDVD--SIREIMWNHAGI 398
           LASNSLLE +V G   A  I+++        +      F E+ D++   ++  M +H  I
Sbjct: 365 LASNSLLEALVFGKRAAEHIIQKPVYNRQYQSGLETSVFYEVPDIEGHELQSKMTSHMSI 424

Query: 399 VRDKSSLLE---GLKKLEGVEAD-----------QRLKVVAKAVLTLALEREESRGSHYR 444
           +R++SSL+E    L  L   E +             L   AK +   AL REESRG+H+R
Sbjct: 425 LREQSSLIELSIWLHTLPFQEVNVKDITIRQMELSHLWQTAKLMTFSALLREESRGAHFR 484

Query: 445 RDFPFMRKEFERPSFFH 461
            DFP     ++     H
Sbjct: 485 TDFPHAEVSWQGRQIVH 501


>pir||OXECLD L-aspartate oxidase (EC 1.4.3.16) nadB [validated] - Escherichia
           coli >gi|1788928|gb|AAC75627.1| (AE000344) quinolinate
           synthetase, B protein [Escherichia coli K12]
           Length = 540
           
 Score =  221 bits (557), Expect = 1e-56
 Identities = 178/516 (34%), Positives = 250/516 (47%), Gaps = 77/516 (14%)

Query: 5   EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
           +V I+G G AGL  A+ L ++  V V   GP ++ S  Y AQ GIA    E DSI  HV 
Sbjct: 10  DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY-AQGGIAAVFDETDSIDSHVE 68

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF------TGNEL-----EGGHSHPR 112
           DT+ AG  I D   V  V S +     +L+  GV F       G E      EGGHSH R
Sbjct: 69  DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 128

Query: 113 VFTIKSETGKHVIPILEKHA----------RELGVNFVRGFVEEIGIKNGK-LAGVFL-- 159
           +      TG+ V   L   A          R   V+ +    ++IG+   + + G ++  
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVS--DKIGLPGTRRVVGAWVWN 186

Query: 160 ----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
                 E     AVV+ATGG S +Y++T     + G  I      G  + ++EF QFHPT
Sbjct: 187 RNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246

Query: 216 GFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEG 265
                  R +L+TEA+RG GA L   DG RF+       EL  RD+VARAI   +K L  
Sbjct: 247 ALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGA 306

Query: 266 KGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
             +FLD   +  +  +  FP +Y  L   GID  ++ +P+ P AHYT GG+ VD   RT 
Sbjct: 307 DCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTD 366

Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND----APYNF 379
           + GLYAIGE +  G HGANR+ASNSLLEC+V G   A  I R  P   A+D     P++ 
Sbjct: 367 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPY--AHDISTLPPWDE 424

Query: 380 DELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD----------- 418
             + + D           +R  MW++ GIVR    L   L+++  ++ +           
Sbjct: 425 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVS 484

Query: 419 ------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                 + L  VA+ ++  A+ R+ESRG H+  D+P
Sbjct: 485 NNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYP 520


>emb|CAA31217.1| (X12714) L-aspartate oxidase (AA 1 - 540) [Escherichia coli]
           Length = 540
           
 Score =  220 bits (556), Expect = 2e-56
 Identities = 178/516 (34%), Positives = 250/516 (47%), Gaps = 77/516 (14%)

Query: 5   EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
           +V I+G G AGL  A+ L ++  V V   GP ++ S  Y AQ GIA    E DSI  HV 
Sbjct: 10  DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY-AQGGIAAVFDETDSIDSHVE 68

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF------TGNEL-----EGGHSHPR 112
           DT+ AG  I D   V  V S +     +L+  GV F       G E      EGGHSH R
Sbjct: 69  DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 128

Query: 113 VFTIKSETGKHVIPILEKHA----------RELGVNFVRGFVEEIGIKNGK-LAGVFL-- 159
           +      TG+ V   L   A          R   V+ +    ++IG+   + + G ++  
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVS--DKIGLPGTRRVVGAWVWN 186

Query: 160 ----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
                 E     AVV+ATGG S +Y++T     + G  I      G  + ++EF QFHPT
Sbjct: 187 RNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246

Query: 216 GFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEG 265
                  R +L+TEA+RG GA L   DG RF+       EL  RD+VARAI   +K L  
Sbjct: 247 ALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGA 306

Query: 266 KGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
             +FLD   +  +  +  FP +Y  L   GID  ++ +P+ P AHYT GG+ VD   RT 
Sbjct: 307 DCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTD 366

Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND----APYNF 379
           + GLYAIGE +  G HGANR+ASNSLLEC+V G   A  I R  P   A+D     P++ 
Sbjct: 367 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPY--AHDISTLPPWDE 424

Query: 380 DELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD----------- 418
             + + D           +R  MW++ GIVR    L   L+++  ++ +           
Sbjct: 425 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVS 484

Query: 419 ------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                 + L  VA+ ++  A+ R+ESRG H+  D+P
Sbjct: 485 DNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYP 520


>sp|P10902|NADB_ECOLI L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|5542180|pdb|1CHU|A Chain A, Structure Of L-Aspartate
           Oxidase: Implications For The Succinate Dehydrogenase
           FUMARATE REDUCATSE FAMILY >gi|285776|dbj|BAA02446.1|
           (D13169) L-aspartate oxidase [Escherichia coli]
           >gi|987649|dbj|BAA10921.1| (D64044) L-aspartate oxidase
           [Escherichia coli]
           Length = 540
           
 Score =  220 bits (556), Expect = 2e-56
 Identities = 178/516 (34%), Positives = 250/516 (47%), Gaps = 77/516 (14%)

Query: 5   EVGIVGGGLAGLVAAISLVEKG-VDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVL 63
           +V I+G G AGL  A+ L ++  V V   GP ++ S  Y AQ GIA    E DSI  HV 
Sbjct: 10  DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY-AQGGIAAVFDETDSIDSHVE 68

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF------TGNEL-----EGGHSHPR 112
           DT+ AG  I D   V  V S +     +L+  GV F       G E      EGGHSH R
Sbjct: 69  DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 128

Query: 113 VFTIKSETGKHVIPILEKHA----------RELGVNFVRGFVEEIGIKNGK-LAGVFL-- 159
           +      TG+ V   L   A          R   V+ +    ++IG+   + + G ++  
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVS--DKIGLPGTRRVVGAWVWN 186

Query: 160 ----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
                 E     AVV+ATGG S +Y++T     + G  I      G  + ++EF QFHPT
Sbjct: 187 RNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246

Query: 216 GFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEG 265
                  R +L+TEA+RG GA L   DG RF+       EL  RD+VARAI   +K L  
Sbjct: 247 ALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGA 306

Query: 266 KGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
             +FLD   +  +  +  FP +Y  L   GID  ++ +P+ P AHYT GG+ VD   RT 
Sbjct: 307 DCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTD 366

Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND----APYNF 379
           + GLYAIGE +  G HGANR+ASNSLLEC+V G   A  I R  P   A+D     P++ 
Sbjct: 367 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPY--AHDISTLPPWDE 424

Query: 380 DELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD----------- 418
             + + D           +R  MW++ GIVR    L   L+++  ++ +           
Sbjct: 425 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVS 484

Query: 419 ------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                 + L  VA+ ++  A+ R+ESRG H+  D+P
Sbjct: 485 NNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYP 520


>sp|P74562|NADB_SYNY3 L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|7431678|pir||S76757 hypothetical protein -
           Synechocystis sp. (strain PCC 6803)
           >gi|1653758|dbj|BAA18669.1| (D90916) L-aspartate oxidase
           [Synechocystis sp.]
           Length = 553
           
 Score =  219 bits (553), Expect = 4e-56
 Identities = 180/531 (33%), Positives = 251/531 (46%), Gaps = 83/531 (15%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
           +V +VG G AGL A + L        +   + K   S  AQ GIA  +   DS + H  D
Sbjct: 7   DVVVVGSGAAGLYACLCLPGHYRVALVTKAELKTGASDWAQGGIAAAIAPTDSPQSHYED 66

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN------ELEGGHSHPRVFTIKS 118
           T+ AG  + D E V  +++ + +A + LV  GV+F  +       LE  HS PRV     
Sbjct: 67  TLAAGAGLCDGEAVDFLVNHAPQAIAELVQFGVSFDRHGQHLALTLEAAHSQPRVLHAAD 126

Query: 119 ETGKHVIPIL--EKHARELGVNFVRGFVEEIGIK--NGKLAG--VFLNGELLKFD--AVV 170
            TG+ ++  L  +  AR     F +     + I+   G   G  VF+N  +  F   AV+
Sbjct: 127 TTGRAIVSTLMGQVQARPNVEIFSQAIALSLNIEPTTGHCRGIQVFVNQTIETFHSRAVL 186

Query: 171 VATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI--GRRTYLITEA 228
           +ATGG   ++  T   K + G  I      G  +RD+EF QFHPT     G   +LI+EA
Sbjct: 187 LATGGGGQVFAQTTNPKVSTGDGIALAWRSGAQVRDLEFFQFHPTALTKPGVPHFLISEA 246

Query: 229 VRGAGAKLVTGDGERFV------NELETRDVVARAIYLKMLEGKG------VFLDARGIE 276
           VRG GA L+   G+RF        EL  RDVV+RAI+  +   +       VFLD   IE
Sbjct: 247 VRGEGAHLLDRQGKRFAFDYHPRGELAPRDVVSRAIFQHLANTEKDPTQATVFLDLSPIE 306

Query: 277 D--FKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAA 334
               + RFP +       G+D  ++ IPV P AHY MGGI+ DI  +T I GLYA+GE A
Sbjct: 307 PERIQRRFPNIIRRCLHWGVDIFREPIPVAPAAHYWMGGITTDINCQTTIPGLYALGETA 366

Query: 335 SNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAPYN-------FDELGDV-- 385
           S G HGANRLASNSLLEC+V   ++    L   P   ++D+  N        D   D+  
Sbjct: 367 STGVHGANRLASNSLLECIVFASQLRNLSL---PPLASSDSNVNQSIKEIRLDTTNDLAL 423

Query: 386 -----DSIREIMWNHAGIVRDKSSLLEGLKKLEG----------------VEADQRLKV- 423
                  +  +MW  AGI R   +L   + KLE                 +  DQ++ + 
Sbjct: 424 LNHWRSELPRLMWQTAGICRQAETLQMAIAKLEQWQEQWQQLSSSKLLAHLPEDQKISLS 483

Query: 424 -------------------VAKAVLTLALEREESRGSHYRRDFPFMRKEFE 455
                              +A+ +LT AL REESRG HYR D P  ++E++
Sbjct: 484 GPGLNEFMQLWAETHNLLDIAQLILTSALFREESRGGHYRLDCPDTKREWQ 534


>sp|Q51363|NADB_PSEAE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|11252563|pir||T46863 L-aspartate oxidase (EC
           1.4.3.16) [validated] - Pseudomonas aeruginosa
           >gi|11350532|pir||A83550 L-aspartate oxidase PA0761
           [imported] - Pseudomonas aeruginosa (strain PAO1)
           >gi|608530|gb|AAA92356.1| (U17232) L-aspartate oxidase
           [Pseudomonas aeruginosa]
           >gi|9946649|gb|AAG04150.1|AE004511_3 (AE004511)
           L-aspartate oxidase [Pseudomonas aeruginosa]
           Length = 538
           
 Score =  219 bits (551), Expect = 7e-56
 Identities = 172/520 (33%), Positives = 251/520 (48%), Gaps = 73/520 (14%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
           +V ++G G AGL  A++L E      +   +    ++Y AQ G+A  L + D++  HV D
Sbjct: 8   DVLVIGSGAAGLSLALTLPEHLRIAVLSKGELSQGSTYWAQGGVAAVLDDTDTVESHVED 67

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------EGGHSH 110
           T+ AG  +  E+ V   +  S EA  +L+  GV FT +E               EGGHSH
Sbjct: 68  TLVAGGGLCREDAVRFTVEHSREAIQWLIEQGVPFTRDEQHNHEEGSFEYHLTREGGHSH 127

Query: 111 PRVFTIKSETGKHVI----------PILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL- 159
            R+      TG  +           P +E  ++ + V+ +     ++G+ + +  G ++ 
Sbjct: 128 RRIIHAADATGAAIFNTLLAQARRRPNIELLSQRVAVDLITE--RKLGLPSKRCLGAYVL 185

Query: 160 ---NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHP 214
              +GE+  F A   V+A+GG S +Y +T+    N G  I      G  + ++EF QFHP
Sbjct: 186 NRESGEVDTFRARFSVLASGGASKVYLYTSNPDGNSGDGIAMAWRAGCRVGNLEFNQFHP 245

Query: 215 TGFIG--RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLE 264
           T       +++LITEA+RG GA L   +GERF+       EL  RD+VARAI   +K L 
Sbjct: 246 TCLYHPQAKSFLITEALRGEGALLRLPNGERFMPRFDPRGELAPRDIVARAIDHEMKRLG 305

Query: 265 GKGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRT 322
              V+LD   +  E  K  FP VY      GID  +  IPV P AHYT GG+ VD    T
Sbjct: 306 IDCVYLDISHKPAEFIKAHFPTVYERCLDFGIDITQQPIPVVPAAHYTCGGVLVDQHGHT 365

Query: 323 RIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP------KRGANDAP 376
            + GLYAIGE    G HGANR+ASNSLLEC V     A  +L+  P         + DA 
Sbjct: 366 DVPGLYAIGETTFTGLHGANRMASNSLLECFVYARSAAADMLQRLPGTPVPESLPSWDAS 425

Query: 377 YNFDELGDV------DSIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD------------ 418
              D   DV      D +R  MW++ GIVR    L     ++  + ++            
Sbjct: 426 QVTDSDEDVIIAHNWDELRRFMWDYVGIVRTNKRLQRAQHRVRLLLSEIDEFYSNYKVSR 485

Query: 419 -----QRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKE 453
                + L +VA+ ++  A++R ESRG HY  D+P +  E
Sbjct: 486 DLIELRNLALVAELIIRSAMQRRESRGLHYTLDYPDLLPE 525


>sp|O06595|NADB_MYCTU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|7449078|pir||E70543 probable L-aspartate oxidase -
           Mycobacterium tuberculosis  (strain H37RV)
           >gi|2117242|emb|CAB09074.1| (Z95586) nadB [Mycobacterium
           tuberculosis]
           Length = 527
           
 Score =  216 bits (545), Expect = 4e-55
 Identities = 169/490 (34%), Positives = 237/490 (47%), Gaps = 49/490 (10%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD--SNSYLAQAGIAFPLVEGD-SIRIH 61
           +V ++G G+AGL AA++    G  V ++   ++   + ++ AQ GIA  L + D S+  H
Sbjct: 11  DVVVIGTGVAGLAAALAADRAGRSVVVLSKAAQTHVTATHYAQGGIAVVLPDNDDSVDAH 70

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
           V DT+ AG  + D + V+++++    A + LV  G     +         EGGHS  R+ 
Sbjct: 71  VADTLAAGAGLCDPDAVYSIVADGYRAVTDLVGAGARLDESVPGRWALTREGGHSRRRIV 130

Query: 115 TIKSE-TGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL-----NGELLKFDA 168
               + TG  V   L+  A  L +    G V    + +G      L        ++   +
Sbjct: 131 HAGGDATGAEVQRALQDAAGMLDIR--TGHVALRVLHDGTAVTGLLVVRPDGCGIISAPS 188

Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT----GFIGRRTYL 224
           V++ATGG   LY  T     + G  I      GV + D+EF+QFHPT    G  G R  L
Sbjct: 189 VILATGGLGHLYSATTNPAGSTGDGIALGLWAGVAVSDLEFIQFHPTMLFAGRAGGRRPL 248

Query: 225 ITEAVRGAGAKLVTGDGERF------VNELETRDVVARAI--YLKMLEGKGVFLDARGIE 276
           ITEA+RG GA LV   G         + +L  RDVVA AI   LK      V+LDARGIE
Sbjct: 249 ITEAIRGEGAILVDRQGNSITAGVHPMGDLAPRDVVAAAIDARLKATGDPCVYLDARGIE 308

Query: 277 DFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASN 336
            F  RFP V +  +  GIDP +  IPV P AHY+ GGI  D++ +T + GLYA GE A  
Sbjct: 309 GFASRFPTVTASCRAAGIDPVRQPIPVVPGAHYSCGGIVTDVYGQTELLGLYAAGEVART 368

Query: 337 GFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDA--------PYNFDELGDVDSI 388
           G HGANRLASNSLLE +V G    +         G + A        P ++  L D   +
Sbjct: 369 GLHGANRLASNSLLEGLVVGGRAGKAAAAHAAAAGRSRATSSATWPEPISYTAL-DRGDL 427

Query: 389 REIMWNHAGIVRDKSSLLEGLKKLEGVEA----------DQRLKVVAKAVLTLALEREES 438
           +  M   A + R  + L      L G +           D  L +VA++V   AL R ES
Sbjct: 428 QRAMSRDASMYRAAAGLHRLCDSLSGAQVRDVACRRDFEDVALTLVAQSVTAAALARTES 487

Query: 439 RGSHYRRDFP 448
           RG H+R ++P
Sbjct: 488 RGCHHRAEYP 497


>dbj|BAB04937.1| (AP001511) L-aspartate oxidase [Bacillus halodurans]
           Length = 509
           
 Score =  212 bits (535), Expect = 6e-54
 Identities = 167/488 (34%), Positives = 235/488 (47%), Gaps = 39/488 (7%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
           D EV IVG G+A +++A  L +    + I       SNS+LAQ GIA P+ EGD  + H 
Sbjct: 4   DGEVIIVGSGIAAMMSAYLLRKSFHVIMITKSDVFASNSFLAQGGIAAPIAEGDDWQAHT 63

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFT 115
            DT +AG    DE  +  +   +      L   GV+F   E       LEG H   R+  
Sbjct: 64  ADTWKAGAAHGDETSIEMMTKHAVNMIELLDDLGVSFDREESGGYSLGLEGAHGTRRIVH 123

Query: 116 IK-SETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKFDAVVVATG 174
           +  +ETGK V+  L K  +       R  V        ++ GV  +   L     +VATG
Sbjct: 124 VNGAETGKAVMRALWKAIKNEITLLDRTCVYRFIKNKDEIIGVETDQGSLFAPVTIVATG 183

Query: 175 GFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR---RTYLITEAVRG 231
           G   +Y  T+  KE  G  I      G  + D+EF+QFHPT + G    +  LI+EAVRG
Sbjct: 184 GCGQMYSVTSNGKEATGDGIALAYRSGAAISDVEFIQFHPTVYTGNEKEKGLLISEAVRG 243

Query: 232 AGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDARGIEDFKDRFPYVYSVLKK 291
            G +L+T  GER +  L++RDVV+R I+ +  EG  V LD  GI DF+ +FP +Y    K
Sbjct: 244 EGGQLITSAGER-LQSLKSRDVVSREIFRQEREGHTVHLDLTGISDFERKFPALYKGFNK 302

Query: 292 EGIDPGKDLIP-VTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLL 350
                 + L P VTP AH+  GGISVD + +T +  LYA+GE A  G HGANRLASNSLL
Sbjct: 303 SD---RRTLKPRVTPGAHFLNGGISVDAWGQTSLSRLYAVGEVACTGVHGANRLASNSLL 359

Query: 351 ECVVSGLEVARTILREEPKRGA-------NDAPYNFDELGDVDSIREIMWNHAGIVRDKS 403
           E +V   + A  I +      A          P +F +L   + +++ M  + GI R   
Sbjct: 360 EGLVFAHQAATHIQQTFQPLTAGLFVERDKAEPRSF-KLPTREDLQKKMMRYVGIERHAR 418

Query: 404 SL---------------LEGLKKLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
           SL                 G      +     + ++A  +   A  R ESRG H+R D+P
Sbjct: 419 SLWYMNNWFQPFLDTAHYNGPWPERDMFEQANMTLLASLITRSAAIRTESRGGHFRADYP 478

Query: 449 FMRKEFER 456
               +F++
Sbjct: 479 NGLDKFQQ 486


>pir||T36393 L-aspartate oxidase - Streptomyces coelicolor
           >gi|4585614|emb|CAB40882.1| (AL049628) L-aspartate
           oxidase [Streptomyces coelicolor A3(2)]
           Length = 580
           
 Score =  208 bits (523), Expect = 1e-52
 Identities = 168/515 (32%), Positives = 244/515 (46%), Gaps = 70/515 (13%)

Query: 2   IDMEVGIVGGGLAGLVAAISLVEKGV-DVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRI 60
           I  +V +VG G+AGL AA+     G+  V +   +  D ++  AQ G+A  L EGD+   
Sbjct: 17  IAADVVVVGSGVAGLTAALRCESAGLRTVVVTKARLDDGSTRWAQGGVAAALGEGDTPEQ 76

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRV 113
           H+ DT+ AG  + D++ V  ++++  +A   L++ G  F  +         EGGH   R+
Sbjct: 77  HLDDTLVAGAGLCDQDAVRILVTEGPDAVRRLIATGAHFDESTEGGLALTREGGHHRRRI 136

Query: 114 FTIKSE-TGKHVIPILEKHARELGVNFVRG--FVEEIGIKNGKLAGVFLN--GE------ 162
                + TG  +   L +  R  G+  V     ++ +    G+ AGV L+  GE      
Sbjct: 137 AHAGGDATGAEISRALVEAVRARGLRTVENALVLDLLTDAEGRTAGVTLHVMGEGQHDGV 196

Query: 163 -LLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG-FIGR 220
             +   AVV+ATGG   ++  T     + G  +      G  + D+EFVQFHPT  F+G 
Sbjct: 197 GAVHAPAVVLATGGMGQVFSATTNPSVSTGDGVALALRAGAEVSDLEFVQFHPTVLFLGS 256

Query: 221 ----RTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLE--GKGV 268
               +  L++EAVRG GA LV  DG RF+       EL  RD+VA+AI  +M E     +
Sbjct: 257 DAEGQQPLVSEAVRGEGAHLVDADGVRFMQGRHELAELAPRDIVAKAITRRMQEHGADHM 316

Query: 269 FLDAR--GIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRG 326
           +LDAR  G   ++ RFP + +  +  GIDP  + +PV P AHY  GG+  D   RT + G
Sbjct: 317 YLDARHFGRTMWEHRFPTILAACRAHGIDPVTEPVPVAPAAHYASGGVRTDAHGRTTVPG 376

Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPK---RGANDAPYNFDELG 383
           LYA GE A  G HGANRLASNSLLE +V    +A  I              AP    +  
Sbjct: 377 LYACGEVACTGVHGANRLASNSLLEGLVYAERIAADIAAAHTAGTLHARVPAPLPHPDHS 436

Query: 384 DVD-----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR------------ 420
                         +I+ IM   AG++R   SL     +L G+ A+ R            
Sbjct: 437 QHPRHPLLPPEARLTIQRIMTEGAGVLRSADSLARAADRLHGLHAEAREALHEHGKTSEP 496

Query: 421 ---------LKVVAKAVLTLALEREESRGSHYRRD 446
                    L  VA+ ++  A  REE+RG H+R D
Sbjct: 497 GVDTWEATNLLCVARVLVAAAARREETRGCHWRED 531


>pir||C70353 succinate dehydrogenase (EC 1.3.99.1) flavoprotein - Aquifex
           aeolicus >gi|2983214|gb|AAC06812.1| (AE000697) fumarate
           reductase flavoprotein subunit [Aquifex aeolicus]
           Length = 571
           
 Score =  208 bits (523), Expect = 1e-52
 Identities = 179/526 (34%), Positives = 256/526 (48%), Gaps = 83/526 (15%)

Query: 5   EVGIVGGGLAGLVAAISLV-EKGVDVSIIGPKSKD-SNSYLAQAGIAFPL---VEGDSIR 59
           +V ++GGG AGL  AI +  +  + V+++       S++  AQ G+   L   +  DS  
Sbjct: 7   DVVVIGGGGAGLRTAIEVAKDPNISVALVSKVYPTRSHTGAAQGGMNAALGNVIPDDSPE 66

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHPR 112
           +H  DTI+   ++ D++ V+ +  K+ E    L   GV F+            GG S PR
Sbjct: 67  VHAYDTIKGSDFLADQDAVFFMTEKAPEIIYELDRWGVPFSRLPDGRIAQRPFGGASFPR 126

Query: 113 VFTIKSETGKHVIPILEKHA--RELGVNFVRGFVEEIGIKNGKLAGVFL----NGELL-- 164
                 +TG  ++  L + A  R+    F   F+ ++     ++ GV +    NGE+L  
Sbjct: 127 TVFAADKTGHVLLHTLFEQALARDNITFFNEYFLLDLIHDGERVKGVTIYDIRNGEVLFL 186

Query: 165 KFDAVVVATGGFSGLYRF-TAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTY 223
           +  AVV+ATGGF+ +Y F +     N G         GVPL+DMEF+QFHPTG + +   
Sbjct: 187 QAKAVVLATGGFARIYWFRSTNAIGNTGDGQAVALRAGVPLKDMEFIQFHPTG-LAKTGI 245

Query: 224 LITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-------- 268
           L++EA RG G  L+  +GERF+        EL  RD+V+RAI  ++ EG+GV        
Sbjct: 246 LLSEACRGEGGYLLNKEGERFMKRYAPDKMELAPRDIVSRAIETEIREGRGVGEGARAYV 305

Query: 269 FLDAR--GIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIFY--RTR 323
           +LD R  G E  K+R P V  + +  EG+DP K+L+P+ P AHY MGGI V+ +    T 
Sbjct: 306 YLDLRHLGEEKIKERLPQVRQLAIDFEGVDPAKELVPIRPSAHYCMGGIHVENYKTSETP 365

Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECVVSGL---EVARTILRE---------EPKRG 371
           ++GLYA+GE A    HGANRL  NSL E VV G       R  ++E         EPK+ 
Sbjct: 366 LKGLYAVGECACVSVHGANRLGGNSLTELVVFGKYCGMAVREFVKETDFAPVSESEPKKS 425

Query: 372 ANDAPYNFDELGDVD------SIREIMWNHAGIVRDKSSLLEGLKKL-EGVEADQRLKVV 424
                      G+         + EI W   GI RD+ SL E   +L E +E    + VV
Sbjct: 426 EEFIEELMKREGNESLAQVRAQMGEITWAKMGIFRDEKSLKEAYDELSELLERWNNIPVV 485

Query: 425 AKA---------VLTL-------------ALEREESRGSHYRRDFP 448
            KA         VL L             AL R ESRG H R D+P
Sbjct: 486 DKAKVFNTNLIEVLELRNMLELARVVAYSALHRRESRGGHSREDYP 531


>pir||F72691 probable fumarate reductase flavoprotein subunit APE0950 -
           Aeropyrum pernix (strain K1) >gi|5104619|dbj|BAA79934.1|
           (AP000060) 573aa long hypothetical fumarate reductase
           flavoprotein subunit [Aeropyrum pernix]
           Length = 573
           
 Score =  205 bits (516), Expect = 9e-52
 Identities = 170/533 (31%), Positives = 245/533 (45%), Gaps = 94/533 (17%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSK----DSNSYLAQAGIAFPLV--EGDSIRIH 61
           +VG G+AGL AA+ +  +  D   +G  SK     S+S  A+ G A  +   EGDS  +H
Sbjct: 3   VVGTGIAGLRAAVEIKRRYGDKLDVGLVSKIHLMRSHSISAEGGTAAVIYKEEGDSYALH 62

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
             DTI+   ++ D++ VW  +    E    L   G+ ++            GGHS  R  
Sbjct: 63  AWDTIKGSDFLADQDAVWIFVKLMPEEVRLLEHWGMPWSRRPDGRLAVRAFGGHSVKRTL 122

Query: 115 TIKSETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFL----NGE--LLKF 166
               +TG + +  L     +      +   +   I +++G+  GVF     +G+  L K 
Sbjct: 123 FAGDKTGFYEMHTLYNKLLQYDGWERYDEWYATNIVVEDGEFRGVFAINPRDGDIYLFKA 182

Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLIT 226
            A ++ATGG   LY F        G   G     G+PL+D EF QFHPTG I     LIT
Sbjct: 183 KAGIIATGGAGRLYNFATYAHTVTGDGWGMALRAGLPLKDPEFFQFHPTGLIPSGI-LIT 241

Query: 227 EAVRGAGAKLVTGDGERFV---------NELETRDVVARAIYLKMLEGKG---------- 267
           E  RG G  L+   GERF+          E+  RD+V+R I  ++LEG+G          
Sbjct: 242 EGARGEGGYLLNNRGERFMLRKECAPKMAEIAPRDIVSRCIIREILEGRGFKDDVSGLEY 301

Query: 268 VFLDAR--GIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR- 323
           V LD R  G E   +R P V  + ++  GIDP ++ +PV PVAHYTMGGI  D +YR   
Sbjct: 302 VLLDLRHLGEEKINERLPAVREIAIRYAGIDPVEEPLPVRPVAHYTMGGIRTDSYYRVLD 361

Query: 324 -----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE----------EP 368
                +RGL+A GE A+   HGANRL SNS  EC+ SG  +A  +  E          EP
Sbjct: 362 AEGRWVRGLFAAGEVAAASIHGANRLGSNSTAECLTSG-RIAGMLAAEYALKAEARGVEP 420

Query: 369 KRGANDAPYNFD----ELGDVD-----SIREIMWNHAGIVRDKSSLLEGLKKL------- 412
           +R   +  + +     E G         +R+ M  +  ++RD+  +  GL  +       
Sbjct: 421 ERFEKEEAWVYGLVKRESGTPSYAIKRELRDTMGKYFYVIRDEEGMRRGLLTILKLRKMF 480

Query: 413 -EGVEADQRLKV----------------VAKAVLTLALEREESRGSHYRRDFP 448
            E V  + + ++                 A AV   AL R ESRG+HYR D+P
Sbjct: 481 REDVYVEDKGRIYNTDLIAALETANMLDAALAVAKAALNRAESRGAHYRVDYP 533


>gb|AAK42509.1| Succinate dehydrogenase subunit A (sdhA) [Sulfolobus solfataricus]
           Length = 566
           
 Score =  200 bits (503), Expect = 3e-50
 Identities = 169/527 (32%), Positives = 248/527 (46%), Gaps = 83/527 (15%)

Query: 2   IDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLV----EGD 56
           I+ +  ++GGGLAGL++A  +   G  V++I       S+S  A+ GIA  +       D
Sbjct: 4   IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPND 63

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
           +      DT++ G Y+ D++    + +KS E    L   G  F             GG +
Sbjct: 64  NPDYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQT 123

Query: 110 HPRVFTIKSETGKHVIPILEKHARELGVNFVRG-FVEEIGIKNGKLAGVF------LNGE 162
           +PR   +  +TG  ++  L +    L V+F    F  ++   + K+AG+       L   
Sbjct: 124 YPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDDKKVAGIVAMQMKTLTPF 183

Query: 163 LLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
             K  AVV+ATGG   LYR T     N G   G     G  L+D EFVQFHPT  +    
Sbjct: 184 FFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTA-LYPSD 242

Query: 223 YLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFL 270
            LI+EA RG GA L    GERF+        +L  RD+V+RAI  ++ EG+G     V L
Sbjct: 243 VLISEAARGEGAILKNIKGERFMTRYAPKKLDLAPRDIVSRAIITEIKEGRGFPGGYVGL 302

Query: 271 DAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT-RIRG 326
           D    G E  K+R        K   G+D   + IPV P  HY MGGI VDI  R   I G
Sbjct: 303 DLTHLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIEGRNPDIVG 362

Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------------EEPKRGA 372
           L++ GEAA    HGANRL SNSLL+ +V G    R +++              +E ++  
Sbjct: 363 LFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRAVVQFLKSNSSNPTSNYEKEAEKVV 422

Query: 373 NDA--------PYNFDELGDVDSIREIMWNHAGIVRDKSSLLEG---LKKLEGVEAD--- 418
           +DA          +F ++  ++ +R+ MW++ GI RD+  LL     + KL G+ ++   
Sbjct: 423 DDAYKLVKSESGVHFGQI--LEKLRDTMWDYVGIYRDEGGLLNAMSEINKLRGMISNMYV 480

Query: 419 -----------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                            + +  +A  +   ALER+ESRG+HYR D+P
Sbjct: 481 TDKSKVYNTEFFNALELRNMLDLAFVIAKSALERKESRGAHYRTDYP 527


>emb|CAC04215.1| (AL391515) putative oxidoreductase [Streptomyces coelicolor A3(2)]
           Length = 576
           
 Score =  198 bits (498), Expect = 1e-49
 Identities = 174/525 (33%), Positives = 245/525 (46%), Gaps = 79/525 (15%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVE---GDSIRIHVL 63
           ++G G +GL AAI L E GVDV  +G + K D+++ LA  GI   L      DS + H  
Sbjct: 14  VIGTGGSGLRAAIELAEAGVDVIAVGKRPKEDTHTSLAAGGINAALATMDPEDSWQQHAA 73

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHPRVFTI 116
           DT++    + D      V   +      L  +G+ F             G H   R    
Sbjct: 74  DTLKESYLLGDPRTAEIVTQGAALGIDDLERYGMAFAREGDGRISQRFFGAHKFRRTAFA 133

Query: 117 KSETGKHVIPILEKHARELGVNFVRG-FVEEIGIKNGKLAGVF----LNG--ELLKFDAV 169
              TG  +   L + A +L +  +   ++  + + +G + G +     NG   L+  DAV
Sbjct: 134 GDYTGLEIQRTLIRRAVQLDIPVLDSVYITRLLVHDGAVFGAYGFDLTNGTRHLVHADAV 193

Query: 170 VVATGGFSGLYRFTAGVK-ENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTY---LI 225
           ++A GG + ++R T+  + EN G         G  LRD E VQFHP+G I        L+
Sbjct: 194 ILAAGGHTRIWRRTSSRRDENTGDSFRLAVEAGARLRDPELVQFHPSGIIEPENAAGTLV 253

Query: 226 TEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFLDAR 273
           +EA RG G  L    GER++N       EL TRD VA A Y ++ EG+G     V+LD  
Sbjct: 254 SEAARGEGGILRNALGERYMNRYDPERMELSTRDRVALASYTEIKEGRGTANGGVWLDVS 313

Query: 274 GI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISV-DIFYRTRIRGLYA 329
            +  +   +R P VY ++L  + +D  ++ I V P AHY+MGG+ V    + T +RGLYA
Sbjct: 314 HLPRQTIMNRLPRVYQTLLDLQMLDITREPIEVAPTAHYSMGGVWVRPEDHSTDVRGLYA 373

Query: 330 IGEAASNGFHGANRLASNSLLECVVSGLEVARTI------LREEPKRGAN--DAPYNFDE 381
           IGEAAS G HGANRL  NSL+E +V G    R        L  +P+      +A    DE
Sbjct: 374 IGEAAS-GLHGANRLGGNSLIELLVYGRITGRAAAAYSESLTAQPRSATAVAEARAEVDE 432

Query: 382 LGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEADQR----------- 420
           L   D          +IR  M  HAG+VRD+  L  GL +L+ VE   +           
Sbjct: 433 LLAADGPENVRALQRAIRNTMTEHAGVVRDEDGLRAGLAELDTVEKRMQNVGVHPDIAGF 492

Query: 421 -----------LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEF 454
                        + A+A L  ALER E+RG H R DFP M   F
Sbjct: 493 QDLAHAFDLKSAALAARATLEAALERRETRGCHNRSDFPDMDPAF 537


>pir||D69067 succinate dehydrogenase, flavoprotein subunit - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622619|gb|AAB85977.1| (AE000910) succinate
           dehydrogenase, flavoprotein subunit  [Methanobacterium
           thermoautotrophicum]
           Length = 558
           
 Score =  195 bits (490), Expect = 1e-48
 Identities = 160/525 (30%), Positives = 250/525 (47%), Gaps = 74/525 (14%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSII--GPKSKDSNSYLAQAGI--AFPLVEG-DS 57
           + +V I+G G AG  AAI + E  +   I+  G   K   + +A+ G   AF  V+  DS
Sbjct: 13  ECDVLIIGSGGAGCRAAIEVSEHNLTPLIVSKGLSFKSGCTGMAEGGYNAAFACVDPEDS 72

Query: 58  IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
             +H  DT+R G ++ND ++V  ++ ++ +    L ++G  F   E         GG ++
Sbjct: 73  PDVHFEDTMRGGGFLNDPQLVRILVDEAPDRLRDLETYGALFDRQESGLLDQRPFGGQTY 132

Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKNGKLAGVF------LNGEL 163
            R       TG  +I  L++      +  V    +  + ++  ++ G         +   
Sbjct: 133 RRTCYQGDRTGHEMITALKEEVIRRDIETVEEIMITSLLVEEDRVLGAMGVSIRDSSTVA 192

Query: 164 LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI---GR 220
            +  + ++A GG   +Y  T+   +  G         G  L DME VQFHPTG +    R
Sbjct: 193 FRASSTILAAGGAGHIYPVTSNTIQKGGDGFSVAWKAGADLIDMEQVQFHPTGMVYPESR 252

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKG-----VF 269
           R  L+TEAVRG G  L+  +GERF+       EL TRDVVARAIY +++EG+G     V+
Sbjct: 253 RGVLVTEAVRGEGGILLNSEGERFMKRYDPRGELATRDVVARAIYTEIMEGRGTGNGGVY 312

Query: 270 LDARGIED--FKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGL 327
           LD   + D   +++   +    +  GID   + + V P AH+ MGG+ +D + RT +R L
Sbjct: 313 LDVSHLPDEVIEEKLETMLLQFQDVGIDIRSEPMEVAPTAHHFMGGVRIDEWGRTNLRNL 372

Query: 328 YAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEP---KRGANDAPYNFD 380
           +A GE  + G HGANRL  N+L +  V    +G+  AR  ++  P   K    +  Y   
Sbjct: 373 FAAGE-VTGGVHGANRLGGNALADTQVFGRRAGIAAARNAIKSAPASIKSTVEEEEYRIK 431

Query: 381 EL--------GDV-DSIREIMWNHAGIVRDKSSL------LEGLKKLEG----------- 414
            +         ++ D + E MWN   IVR + SL      ++ L  + G           
Sbjct: 432 SMVAEGSHSPSEIRDRLHEAMWNGVAIVRSRESLESARAVIQDLTTMMGDLNVPETSGFN 491

Query: 415 ---VEA--DQRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEF 454
              +EA   + + V +  V+  AL REESRGSHYR+DFP  R E+
Sbjct: 492 TYLIEALELENMLVTSSMVVESALIREESRGSHYRKDFPETRPEW 536


>pir||D81881 probable succinate dehydrogenase (EC 1.3.99.1) flavoprotein NMA1145
           [imported] - Neisseria meningitidis (group A strain
           Z2491) >gi|7379838|emb|CAB84407.1| (AL162755) putative
           succinate dehydrogenase flavoprotein subunit [Neisseria
           meningitidis Z2491]
           Length = 587
           
 Score =  193 bits (485), Expect = 4e-48
 Identities = 169/536 (31%), Positives = 251/536 (46%), Gaps = 97/536 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           IVGGG AGL AA+ L + G++ +++       S++  AQ GI+  L  V+ D    H+ D
Sbjct: 12  IVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQEDRWDWHMYD 71

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP------ 111
           T++   ++ D++ +  +   + EA   L   G+ F   E         GGH+        
Sbjct: 72  TVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGHTAEHGKRAV 131

Query: 112 -RVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEE-IGIKNGKLAGVFL----NGELL 164
            R   +   TG  ++  L +++ R     FV    ++ I  +NG + GV       GE+ 
Sbjct: 132 ERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTAMEMETGEVY 191

Query: 165 KFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
            F A  V+ ATGG   +Y  +     N G  +G  A  G+PL DMEF QFHPTG  G   
Sbjct: 192 IFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFHPTGVAGAGV 251

Query: 223 YLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKG-------- 267
            LITE VRG G  L+  DGERF       V +L +RDVV+RA+ +++ EG+G        
Sbjct: 252 -LITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHV 310

Query: 268 -VFLDARGIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIF------ 319
            + +D  G E   ++ P +  + ++  GIDP KD IPV P  HY MGGI  +        
Sbjct: 311 LLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVP 370

Query: 320 ----YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR-EEPKRGAND 374
               Y   ++GLYA GE A    HGANRL +NSLL+ VV G     ++++  + +     
Sbjct: 371 QGDEYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKP 430

Query: 375 APYNFDEL--------------GDVDSIREIMWN----HAGIVRDKSSLLEGLK------ 410
            P N  EL               +VD++R  +      HAG+ R    L +G++      
Sbjct: 431 LPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIA 490

Query: 411 ------------------KLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                             ++E +E D  ++ VAKA L  A  R+ESRG+H   D P
Sbjct: 491 ERVKRTEIKDKSKVWNTARIEALELDNLIE-VAKATLVSAEARKESRGAHASDDHP 545


>pir||F81138 succinate dehydrogenase, flavoprotein chain NMB0950 [imported] -
           Neisseria meningitidis (group B strain MD58)
           >gi|7226189|gb|AAF41356.1| (AE002446) succinate
           dehydrogenase, flavoprotein subunit [Neisseria
           meningitidis MC58]
           Length = 587
           
 Score =  193 bits (485), Expect = 4e-48
 Identities = 169/536 (31%), Positives = 251/536 (46%), Gaps = 97/536 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           IVGGG AGL AA+ L + G++ +++       S++  AQ GI+  L  V+ D    H+ D
Sbjct: 12  IVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRSHTVAAQGGISASLGNVQEDRWDWHMYD 71

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP------ 111
           T++   ++ D++ +  +   + EA   L   G+ F   E         GGH+        
Sbjct: 72  TVKGSDWLGDQDAIEFMCRAAPEAVIELEHMGMPFDRVESGKIYQRPFGGHTAEHGKRAV 131

Query: 112 -RVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEE-IGIKNGKLAGVFL----NGELL 164
            R   +   TG  ++  L +++ R     FV    ++ I  +NG + GV       GE+ 
Sbjct: 132 ERACAVADRTGHAMLHTLYQQNVRANTQFFVEWTAQDLIRDENGDVVGVTAMEMETGEVY 191

Query: 165 KFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
            F A  V+ ATGG   +Y  +     N G  +G  A  G+PL DMEF QFHPTG  G   
Sbjct: 192 IFHAKAVMFATGGGGRIYASSTNAYMNTGDGLGICARAGIPLEDMEFWQFHPTGVAGAGV 251

Query: 223 YLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKG-------- 267
            LITE VRG G  L+  DGERF       V +L +RDVV+RA+ +++ EG+G        
Sbjct: 252 -LITEGVRGEGGILLNADGERFMERYAPTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHV 310

Query: 268 -VFLDARGIEDFKDRFPYVYSV-LKKEGIDPGKDLIPVTPVAHYTMGGISVDIF------ 319
            + +D  G E   ++ P +  + ++  GIDP KD IPV P  HY MGGI  +        
Sbjct: 311 LLKIDHIGAEKIMEKLPGIREISIQFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVP 370

Query: 320 ----YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR-EEPKRGAND 374
               Y   ++GLYA GE A    HGANRL +NSLL+ VV G     ++++  + +     
Sbjct: 371 QGEDYEVPVKGLYAAGECACASVHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKP 430

Query: 375 APYNFDEL--------------GDVDSIREIMWN----HAGIVRDKSSLLEGLK------ 410
            P N  EL               +VD++R  +      HAG+ R    L +G++      
Sbjct: 431 LPANAGELTRQRIERLDNQTDGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIA 490

Query: 411 ------------------KLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                             ++E +E D  ++ VAKA L  A  R+ESRG+H   D P
Sbjct: 491 ERVKRTEIKDKSKVWNTARIEALELDNLIE-VAKATLVSAEARKESRGAHASDDHP 545


>pir||T50536 succinate dehydrogenase (EC 1.3.99.1) chain A [validated] -
           Acidianus ambivalens >gi|3378540|emb|CAA06780.1|
           (AJ005961) succinate dehydrogenase, subunit A [Acidianus
           ambivalens]
           Length = 566
           
 Score =  190 bits (479), Expect = 2e-47
 Identities = 166/521 (31%), Positives = 239/521 (45%), Gaps = 83/521 (15%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEG-----DSIRIH 61
           ++GGGLAGL+AA  +   G  V++I       S+S  A+ GIA   +EG     D+    
Sbjct: 10  VIGGGLAGLMAAHEIAVSGYKVAVISKVFPTRSHSSSAEGGIA-AYIEGNSDPNDNPDYM 68

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
             DTI+ G ++ D +    +  KS E    + S G  F             GG ++PR  
Sbjct: 69  TYDTIKGGDFLVDPDAAELLSQKSGEIVRIMESWGTLFNRQPDGRVAVRYFGGQTYPRTR 128

Query: 115 TIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGK-LAGVF------LNGELLKFD 167
            +  +    ++  L +    L ++F   +     I++ K + GV       +     K  
Sbjct: 129 FVGDKLEMALLHTLFQRVSGLDIDFYNEWFALDLIRDDKRVVGVVAMEMKSMTPVFFKAR 188

Query: 168 AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITE 227
           A+V+ATGG   LY  +     N G         G  L+D EFVQFHPT        LI+E
Sbjct: 189 AIVMATGGMGMLYAHSTNAYINTGDGYAMALRAGAALKDPEFVQFHPTALYPS-DILISE 247

Query: 228 AVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFLDARGI 275
           A RG GA L+   GERF+        +L  RD+ +RAI  ++ EG+G     V LD R +
Sbjct: 248 AARGEGAILINNKGERFMARYAPRKLDLAPRDITSRAIITEIREGRGFPGGYVGLDLRHL 307

Query: 276 -EDF-KDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR-IRGLYAIG 331
            ED+ K+R    Y   K   G+D  ++ IPV P  HY MGGI VDI  +   + GL+A G
Sbjct: 308 GEDYIKERLALAYEAAKNFAGVDATQEPIPVRPAQHYYMGGIDVDITGQNPDLVGLFAAG 367

Query: 332 EAASNGFHGANRLASNSLLECVVSGLEVARTI---LREEPKRGAN----------DAPYN 378
           EAA    HGANRL SNSLLE +V G E  R +   L E  +  +N          D  Y 
Sbjct: 368 EAACVSVHGANRLGSNSLLETLVFGRETGRAVAKFLSEHKEEDSNSLDKEAEKVVDDAYK 427

Query: 379 FDE------LGDV-DSIREIMWNHAGIVRDKSSLLEGLKKL------------------- 412
           F +       G++ + +R +MW   GI RD+  + + L ++                   
Sbjct: 428 FVKSESGVHFGEILNKLRNVMWEKVGIFRDEDGIKDALSQIIELRKMTSSMYVLDKSTTY 487

Query: 413 -----EGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
                  +E    L  +A  +   ALER+ESRG+HYR D+P
Sbjct: 488 NTEFFNALELRNMLD-LAIVIARTALERKESRGAHYRTDYP 527


>sp|Q60356|Y033_METJA HYPOTHETICAL FAD FLAVOPROTEIN OXIDASE MJ0033
           >gi|2129293|pir||A64304 succinate dehydrogenase (EC
           1.3.99.1) flavoprotein - Methanococcus jannaschii
           >gi|1592258|gb|AAB98014.1| (U67462) succinate
           dehydrogenase, flavoprotein subunit (sdhA)
           [Methanococcus jannaschii]
           Length = 539
           
 Score =  190 bits (479), Expect = 2e-47
 Identities = 156/514 (30%), Positives = 243/514 (46%), Gaps = 68/514 (13%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
           ++ I+GGG A   AAI   +K V +++ G   K   + +A+ G        DS + H  D
Sbjct: 4   DILIIGGGGAAARAAIECRDKNVIIAVKGLFGKSGCTVMAEGGYNAVFNPKDSFKKHFYD 63

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFTIK 117
           T++ G +IN+ ++V  ++  + +    L   G  F   E         GG S  R     
Sbjct: 64  TVKGGGFINNPKLVEILVKNAPKELLNLERFGALFDRTEDGFIAQRPFGGQSFNRTCYCG 123

Query: 118 SETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFLN---GELLKF--D 167
             TG  ++  L ++  +     ++   E + IK     N     +FL+   G +      
Sbjct: 124 DRTGHEIMRGLMEYISKF--ERIKILEEVMAIKLIVKDNRCYGAIFLDLKTGNIFPIFAK 181

Query: 168 AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITE 227
           A ++ATGG   LY  T+   +  G        +G  L DME VQFHPTG +G    L+TE
Sbjct: 182 ATILATGGAGQLYPITSNPIQKTGDGFAIAYNEGAELIDMEMVQFHPTGMVG-TGILVTE 240

Query: 228 AVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGK----GVFLDARGI- 275
           AVRG G  L     ERF+        EL TRDVVARAIY ++ EG+    GV+LD   + 
Sbjct: 241 AVRGEGGILYNKYKERFMVRYDKERMELSTRDVVARAIYKEIQEGRGVNGGVYLDVSHLP 300

Query: 276 -EDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAA 334
            E  + +   +     + GID  K+ + V+P AH+ MGG+ ++    T I GL+A GE  
Sbjct: 301 NEVIEKKLETMLKQFLRVGIDIRKEPMIVSPTAHHFMGGLKINERCETNIIGLFACGE-V 359

Query: 335 SNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAN------DAPYNFDEL----GD 384
           + G HGANRL  N+L +  V G    ++          N      D     +E+    GD
Sbjct: 360 TGGVHGANRLGGNALADTQVFGAIAGKSAKEFVENHDFNNIDAEEDVAKILEEINSLKGD 419

Query: 385 ------VDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD------------------QR 420
                 ++ +R++MW++  I+R++  L + L+K++ +E +                  + 
Sbjct: 420 LNVYNLIEDLRKVMWDYVSIIRNEDGLKKALEKIDEIERNIDNVKVNGIIDLQNYFELKN 479

Query: 421 LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEF 454
           + VVAK V   AL R+ESRG+HYR DFP  ++E+
Sbjct: 480 MVVVAKLVTKSALYRKESRGAHYREDFPETKEEW 513


>sp|Q49617|NADB_MYCLE L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|2145871|pir||S72695 L-aspartate oxidase (EC
           1.4.3.16) nadB - Mycobacterium leprae
           >gi|466783|gb|AAA17059.1| (U00010) L-aspartate oxidase
           (quinolinate synthetase, B protein); nadB;
           Lepb1170_C1_167 [Mycobacterium leprae]
           Length = 424
           
 Score =  190 bits (478), Expect = 3e-47
 Identities = 137/387 (35%), Positives = 204/387 (52%), Gaps = 31/387 (8%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK---DSNSYLAQAGIAFPLV-EGDSIRI 60
           +V ++G G+AGL AA++    G +V ++    +   ++ ++ AQ GIA  L    DS+  
Sbjct: 11  DVVVIGTGVAGLAAALAAHRAGRNVVVLTKADQRRGETATHYAQGGIAVVLPGSDDSVDA 70

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRV 113
           H  DT+ AG  + + + V++++++   A + LV +G  F  +         EGGHS  R+
Sbjct: 71  HASDTLAAGAGMCNLDTVYSIVAEGYHAVTELVGYGARFDESIPGRWAVTCEGGHSRRRI 130

Query: 114 FTIKSE-TGKHVIPILEKHARELGV---NFVRGFVEEIGIKNGKLAGVFLNG-ELLKFDA 168
                + TG  V   L+  A  L +   +     + +  + NG ++ +  NG  ++   +
Sbjct: 131 VHAGGDATGAEVQRALDHAADVLDIRTSHLALRVLHDGTVVNG-VSVLNPNGWGIVSAPS 189

Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI------GRRT 222
           V++A+GG   LY  T   + + G  I      GV + D+EF+QFHPT         G R 
Sbjct: 190 VILASGGLGHLYGATTNPEGSTGDGIALALWAGVAVSDLEFIQFHPTMLFAAGTGTGGRR 249

Query: 223 YLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAI--YLKMLEGKGVFLDARG 274
            L+TEA+RG GA L+   G    +      +L  RDVVA AI   LK      V+LDARG
Sbjct: 250 PLVTEAIRGEGAILLDSKGNSVTSGVHPLGDLAPRDVVAAAIDARLKATGDSCVYLDARG 309

Query: 275 IEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAA 334
           I+ F  RFP V +  +  GIDP ++ IPV P AHY+ GGI  D + +T + GL+A GE A
Sbjct: 310 IDGFASRFPTVTAACRTVGIDPAREPIPVVPGAHYSCGGIVTDAYGQTELAGLFAAGEVA 369

Query: 335 SNGFHGANRLASNSLLECVVSGLEVAR 361
             G HGANRLASNSLLE +V G    R
Sbjct: 370 RTGMHGANRLASNSLLEGLVVGGRAGR 396


>pir||T45162 succinate dehydrogenase (EC 1.3.99.1) chain A [imported] -
           Sulfolobus acidocaldarius >gi|1654087|emb|CAA70249.1|
           (Y09041) succinate dehydrogenase subunit A [Sulfolobus
           acidocaldarius]
           Length = 566
           
 Score =  190 bits (478), Expect = 3e-47
 Identities = 172/524 (32%), Positives = 244/524 (45%), Gaps = 89/524 (16%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEG-----DSIRIH 61
           I+G GLAGL+AA  + + G   ++I       S+S  A+ GIA   V G     DS    
Sbjct: 10  IIGAGLAGLMAAHEISKAGYSAAVISKVFPTRSHSAAAEGGIA-AYVNGNSDPNDSPDYM 68

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVF 114
             DTI+ G Y+ D++    +  KS E    L   G  F             GG ++PR  
Sbjct: 69  AYDTIKGGDYLVDQDAAELLAYKSGEIVELLEKWGALFNRQPDGRIALRYFGGQTYPRTR 128

Query: 115 TIKSETGKHVIPILEKHARELG-VNFV-RGFVEEIGIKNGKLAGVF------LNGELLKF 166
            +  +TG  ++  L +     G V+F    F  E+     ++ GV       +     K 
Sbjct: 129 FVGDKTGMALLHTLYERTSGSGKVDFYFEWFAWELIRDESRVRGVVAFDMRNMVPFFFKA 188

Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALKG-VPLRDMEFVQFHPTGFIGRRT 222
            AVV+A GG   LYR T     N  +  GD   +AL+  V L+D EFVQFHPT       
Sbjct: 189 KAVVIAAGGMGMLYRHTT----NSYIGTGDGYAMALRARVALKDPEFVQFHPTALYPS-D 243

Query: 223 YLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-----VFL 270
            LI+EA RG GA L    GERF+        +L  RD+V+RAI  ++ EG+G     V L
Sbjct: 244 ILISEAARGEGAVLKNAKGERFMTRYAPKKLDLAPRDIVSRAIITEIKEGRGFPGGYVGL 303

Query: 271 DAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR-IRG 326
           D    G E  K+R    Y   K   G+D  K+LIP+ P  HY MGGI VDI  +   + G
Sbjct: 304 DISHLGEEYIKERLALAYEAAKTFSGVDATKELIPIRPAHHYYMGGIDVDITGKNPDVIG 363

Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR------------EEPKRGAND 374
           L+A GEAA    HGANRL SNSLLE +V G E    +++            ++    A  
Sbjct: 364 LFAAGEAACVSVHGANRLGSNSLLETLVFGRETGNEVVKFLQSFTEPSSDIDKEAEKAEQ 423

Query: 375 APYNFDE------LGDV-DSIREIMWNHAGIVRDKSSLLEGLKK-LEGVEADQRLKVVAK 426
           + Y+  +       GD+ + +R+ MW   GI RD++ L   + + L+  E  + + V+ K
Sbjct: 424 SAYDIMKKESGVHFGDILEKLRDYMWEFVGIYRDENGLKNAVSEILKLREQMKNMYVLDK 483

Query: 427 A----------------------VLTLALEREESRGSHYRRDFP 448
           +                      + + AL R+ESRG+HYR D+P
Sbjct: 484 SKVYNTEFYNALELKNMIDLGLVIASTALNRKESRGAHYRTDYP 527


>sp|P44894|FRDA_HAEIN FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|1074113|pir||H64097
           fumarate reductase (EC 1.3.99.1) flavoprotein -
           Haemophilus influenzae (strain Rd KW20)
           >gi|1573849|gb|AAC22493.1| (U32765) fumarate reductase,
           flavoprotein subunit (frdA) [Haemophilus influenzae Rd]
           Length = 599
           
 Score =  189 bits (475), Expect = 6e-47
 Identities = 165/542 (30%), Positives = 258/542 (47%), Gaps = 102/542 (18%)

Query: 2   IDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS---KDSNSYLAQAGIAFPLVEGDSI 58
           +++++ IVG G  GL AAI+  E   ++ I          +++  A+ G A  + E DS 
Sbjct: 4   VNVDIAIVGAGGGGLRAAIAAAEANPNLKIALVSKVYPMRTHTVAAEGGAAAVIKEEDSY 63

Query: 59  RIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHP 111
             H  DT+  G ++ +++VV   +  S    + L   G  ++            GG    
Sbjct: 64  DKHFQDTVAGGDWLCEQDVVEYFVQHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIE 123

Query: 112 RVFTIKSETGKHVIPILEKHA------RELGVNFVRGFVEEIGIKNGKLAGVFLNGELLK 165
           R +    +TG H++  L + +      +    +FV   + + G   G +A   + G L++
Sbjct: 124 RTWFAADKTGFHLLHTLFQTSIQYPQIQRFDEHFVLDILVDDGHARGMVAMNMMEGSLVQ 183

Query: 166 FDA--VVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIG 219
            +A  VV+ATGG    ++F      N G++ GD   +A + GVPLRDMEFVQ+HPTG + 
Sbjct: 184 INANAVVIATGGGCRAFKFNT----NGGIVTGDGLSMAYRHGVPLRDMEFVQYHPTG-LP 238

Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLK 261
               L+TE  RG G  LV  DG R++                   EL  RD V++A + +
Sbjct: 239 NTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIGKPQNKYMELGPRDKVSQAFWQE 298

Query: 262 MLEG------KGV---FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHY 309
             +G      KGV    LD R  G +   +R P++  +    EG++P  + IPV PV HY
Sbjct: 299 WKKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELASAYEGVNPVNEPIPVRPVVHY 358

Query: 310 TMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-----LEVARTIL 364
           TMGGI VD    TRI+GL+A+GE AS+G HGANRL SNSL E VV G         R + 
Sbjct: 359 TMGGIEVDFNSETRIKGLFAVGECASSGLHGANRLGSNSLAELVVLGRVAGEYAAQRAVE 418

Query: 365 REEPKRGANDAPYNFDELGDVDSIRE----------------IMWNHAGIVRDKSSLLEG 408
            +   + A DA    D +  ++++ +                +M    GI RD++S+ + 
Sbjct: 419 AQSVNQSAVDAQAK-DVVARLEALHKQEGNESWSEIRDEMGTVMEEGCGIYRDQASMQKA 477

Query: 409 LKKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRR 445
           + K+ E  E  +R++V                      VA+++   A+ER+ESRG+H R 
Sbjct: 478 VDKIAELKERYKRIRVSDNSSVFNTDVLYTVELGYILDVAQSIANSAIERKESRGAHQRL 537

Query: 446 DF 447
           D+
Sbjct: 538 DY 539


>emb|CAA04398.1| (AJ000941) Thiol:fumarate reductase subunit A [Methanobacterium
           thermoautotrophicum]
           Length = 545
           
 Score =  188 bits (473), Expect = 1e-46
 Identities = 161/529 (30%), Positives = 244/529 (45%), Gaps = 80/529 (15%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSII--GPKSKDSNSYLAQAGI--AFPLVEG-DS 57
           + +V I+G G AG  AAI + E  +   I+  G   K   + +A+ G   AF  V+  DS
Sbjct: 7   ECDVLIIGSGGAGCRAAIEVSEHKLTPIIVSKGLSFKSGCTGMAEGGYNAAFACVDPEDS 66

Query: 58  IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
             +H  DT+R G +IND  +V  ++ ++ +    L  +G  F   E         GG ++
Sbjct: 67  PDVHFEDTMRGGGFINDPRLVRILVDEAPDRLRDLEEYGALFDRQESGLLDQRPFGGQTY 126

Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFV-RGFVEEIGIKNGKLAGVF----LNGELLK 165
                    TG  +I  L++      +  +    +  + +++G + G      +N E + 
Sbjct: 127 RETCYHGDRTGHEMITALKEEVIRRDIETIDEVMITSLLVEDGSVLGAMGVSIMNSEPVA 186

Query: 166 FDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI---GR 220
           F A   ++A+GG   +Y  T+   +  G         G  L DME VQFHPTG +    R
Sbjct: 187 FRASSTILASGGAGHIYPVTSNTMQKGGDGFAIAWKAGADLIDMEQVQFHPTGMVYPESR 246

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKG-----VF 269
           R  L+TEAV+G G  L+  +GERF+       EL TRDVVARAIY +++EG+G     V+
Sbjct: 247 RGVLVTEAVKGEGGILLNSEGERFMGRYDPRGELATRDVVARAIYTEIMEGRGTENGGVY 306

Query: 270 LDARGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVT---PVAHYTMGGISVDIFYRTRIRG 326
           LD   +     R+      +  + +D G D+       P AH+ MGG+ +D +  T ++ 
Sbjct: 307 LD---VSHLLMRYRGELETMLLQFLDVGVDIRSEQWRLPTAHHFMGGVRIDEWGTTNLKN 363

Query: 327 LYAIGEAASNGFHGANRLASNSLLECVVSGLEVA---------------RTILREEPKRG 371
           LYA GE  S G HGANRL  N+L +  V G                   R+++ EE +R 
Sbjct: 364 LYAAGEV-SGGVHGANRLGGNALADTQVFGRRAGISAAKNAMSSSRRHVRSLIEEEEQRI 422

Query: 372 ANDAPYNFDELGDV-DSIREIMWNHAGIVRDKSSLLEGLKK------------------- 411
            +          ++ D + E MW+   IVR + SL   + +                   
Sbjct: 423 KDMVRDGSIRPAEIRDELHEAMWSDVAIVRSRRSLESAMSRISTLMDKLGDLDVPETGGF 482

Query: 412 ----LEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
               LE +E +  L + A  V   AL REESRGSHYR DFP  R E++R
Sbjct: 483 NSNLLEALELENML-ITASLVTRSALIREESRGSHYREDFPETRPEWKR 530


>pir||H81203 l-aspartate oxidase NMB0392 [imported] - Neisseria meningitidis
           (group B strain MD58) >gi|7225614|gb|AAF40832.1|
           (AE002395) l-aspartate oxidase [Neisseria meningitidis
           MC58]
           Length = 502
           
 Score =  188 bits (472), Expect = 1e-46
 Identities = 163/498 (32%), Positives = 233/498 (46%), Gaps = 54/498 (10%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
           D +V I G GLA L  A+SL E    V +   +  D+ S  AQ GIA      D I  HV
Sbjct: 4   DCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRHAQGGIAAAWSGEDDIEKHV 63

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE------LEGGHSHPRVFTI 116
            DT+ AG  + DE  V  ++S+   A  +L++ GV F  N        EGGH+  R+  +
Sbjct: 64  ADTLEAGAGLCDEAAVRAILSQGKPAIEWLLAQGVAFDRNHNGLHLTREGGHTCRRIAHV 123

Query: 117 KSETGKHVIPILEKHARELGVNFV--RGFVEEIGIKNGKLAGVFL----NGELLKFDA-- 168
              TG+ V+  L    R      V  R    +I  ++G   G+ +      E  +  A  
Sbjct: 124 ADYTGEAVMQSLIAQIRRRPNIRVCERQMALDIQTESGAACGLTVLDCRTQETYRIRARH 183

Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI----GRRTYL 224
            V+A GG   +Y  T    E  G  I      G  + ++EF+QFHPTG        RT+L
Sbjct: 184 TVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCAVGNLEFIQFHPTGLARPSENGRTFL 243

Query: 225 ITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDA----RG 274
           I+EAVRG G  L    GERF+       EL  RD+VARAI  ++ +    F+      + 
Sbjct: 244 ISEAVRGEGGILTNQAGERFMPHYDRRAELAPRDIVARAIAAEIAKQTQDFVSLDISHQP 303

Query: 275 IEDFKDRFPYVYS-VLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEA 333
               +  FP ++   L + G+D  +  IPV PV HYT GGI  D   RT +  LYA+GE 
Sbjct: 304 AAFVRRHFPSIHRHCLSQCGLDITRQAIPVRPVQHYTCGGIQTDPCGRTSLPQLYALGET 363

Query: 334 ASNGFHGANRLASNSLLECVVSGLEVARTI-----LREEPKRGAN-----DAPYNFDELG 383
           A  G HGANRLASNSLLECVV+    A+ I      + EP +  +     +A    D+L 
Sbjct: 364 ACTGLHGANRLASNSLLECVVTARLCAQAIADGQAFQAEPFQRPSESLSAEAGIFSDDLQ 423

Query: 384 DVDS---IREIMWNHAGIVRDKSSLLEGLKKLEGVEADQ------------RLKVVAKAV 428
           +  S   ++     H GI+R+ + L   + +L+  + +Q             L   + AV
Sbjct: 424 NTFSRPVLQTFNQRHLGILRNDTGLRRAIAQLQLWKQNQAEPHTASEYENRNLLECSLAV 483

Query: 429 LTLALEREESRGSHYRRD 446
              A  R ++ G+H+  D
Sbjct: 484 AQAAYRRRQNIGAHFNSD 501


>emb|CAC12130.1| (AL445066) probable fumarate reductase (frdA) [Thermoplasma
           acidophilum]
           Length = 567
           
 Score =  187 bits (470), Expect = 2e-46
 Identities = 166/527 (31%), Positives = 247/527 (46%), Gaps = 82/527 (15%)

Query: 2   IDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK----DSNSYLAQAGIAFPLVEGDS 57
           I  +V I+GGG+AGL AA++  E   ++S+ G  SK     S+S  A+ G +  L   DS
Sbjct: 4   IKEDVIILGGGMAGLRAAVAAAEYNKNISV-GVVSKLYPLRSHSVSAEGGTSAVLNPKDS 62

Query: 58  IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
             +H  DTI+   Y+ D++ V   +    E        G  ++ N          G  S 
Sbjct: 63  FDLHAYDTIKGSDYLADQDAVEEFVRLVPEQIYTTDHWGCPWSRNPDGTISQRDFGALSF 122

Query: 111 PRVFTIKSETGKHVIPILEKHAREL-GVNFVRG-FVEEIGIKNGKLAGV----FLNGELL 164
           PR      +TG HV+  L   A +   ++F    F   + +  G+   +       GE +
Sbjct: 123 PRATFAADKTGFHVMQTLFSRALKYDNIHFYNEYFATSMFLDGGRFNSLTTINLRTGEFV 182

Query: 165 KFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
            F   +++ A GG   LY+F+       G         G+PL+DMEF+QFHPTG +    
Sbjct: 183 VFQGKSIIFAAGGAGRLYQFSTYAHSVSGDGDAIAYRAGIPLKDMEFIQFHPTGLVPSGI 242

Query: 223 YLITEAVRGAGAKLVTGDGERFV-----NELE--TRDVVARAIYLKMLEGKG-------- 267
            LITE  R  G  L+ G+ +RF+     N+LE  +RDVV+RAI  ++  G+G        
Sbjct: 243 -LITEGARADGGYLLNGEKKRFMQAYAPNKLEKASRDVVSRAIMWEIEAGRGAKGEYGDM 301

Query: 268 --VFLDARGIEDFKD-RFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
             V+LD R + D  D R P +  + KK  GID   +LIPV P  HYTMGGI  ++   T 
Sbjct: 302 EYVYLDLRHMADILDERLPMITEIAKKFNGIDAHTELIPVHPATHYTMGGIDSNVKTTTD 361

Query: 324 IRGLYAIGEAASNGFHGANRLASNSLLECV----VSGLEVARTILREE-----PKRGAND 374
             G++A GE A    HGANRL SNS  EC+    V+G+  A+  +  +      +   N+
Sbjct: 362 FSGIFAAGENACVSIHGANRLGSNSTNECLALGNVAGVSAAKYAMEHDIPDLVVENVNNE 421

Query: 375 APYNFDEL------GDVDSIRE----IMWNHAGIVRDKSSLLEGLKKLE----------- 413
               +D+L       +V  IRE     M  + GI RD   L   LK ++           
Sbjct: 422 EKRIWDDLLKRDGGENVAKIREDLRINMDKNVGIFRDADGLNTSLKNIKQYKERYQKISI 481

Query: 414 -------GVEADQRLKV-----VAKAVLTLALEREESRGSHYRRDFP 448
                   +E +  L+V     +A+ +   A+ R ESRG+HYR+D+P
Sbjct: 482 QDKSSTFNMELEWALEVGFMLDLAEIITVGAIMRTESRGAHYRKDYP 528


>gb|AAG22257.1| (AE003796) Scs-fp gene product [Drosophila melanogaster]
           Length = 661
           
 Score =  187 bits (470), Expect = 2e-46
 Identities = 163/545 (29%), Positives = 265/545 (47%), Gaps = 101/545 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA  LV +G   ++I       S++  AQ GI   L  +E D  + H+ D
Sbjct: 63  VVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYD 122

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
           T++   ++ D++ +  +  ++ +A   L ++G+ F+             G  L+   GG 
Sbjct: 123 TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQ 182

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
           +H R   +   TG  ++  L   +     N FV  F  ++  ++G+  GV      +G L
Sbjct: 183 AH-RCCAVADRTGHSLLHTLYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTL 241

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F A   V+ATGG+   +          G     +A +G+P +D+EFVQFHPTG  G  
Sbjct: 242 HRFRAKNTVIATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAG 301

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------- 267
             LITE  RG G  L+ G+GERF+        +L +RDVV+R++ ++++EG+G       
Sbjct: 302 C-LITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDH 360

Query: 268 VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRI 324
           V+L    +  +   +R P +  + +   G+D  ++ IPV P  HY MGG+  +  YR ++
Sbjct: 361 VYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTN--YRGQV 418

Query: 325 ------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR-EEP--- 368
                        GLYA GEAAS+  HGANRL +NSLL+ VV G   A+TI    +P   
Sbjct: 419 ITIDKDGKDVIVPGLYAAGEAASSSVHGANRLGANSLLDLVVFGRACAKTIAELNKPGAP 478

Query: 369 ----KRGANDAPY-NFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLE 413
               K  A +A   N D+L   +           +++ M +HA + RD   L +G+ K++
Sbjct: 479 APTLKENAGEASVANLDKLRHANGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMK 538

Query: 414 GV-EADQRLKVVAKAVL-------TLALE---------------REESRGSHYRRDFPFM 450
            + +  + +KVV ++++       TL L+               R+ESRG+H R DF   
Sbjct: 539 EIYKQFKDIKVVDRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVR 598

Query: 451 RKEFE 455
             E++
Sbjct: 599 EDEYD 603


>pir||E81780 L-aspartate oxidase (EC 1.4.3.16) NMA2092 [imported] - Neisseria
           meningitidis (group A strain Z2491)
           >gi|7380717|emb|CAB85308.1| (AL162758) L-aspartate
           oxidase [Neisseria meningitidis Z2491]
           Length = 502
           
 Score =  186 bits (468), Expect = 4e-46
 Identities = 158/498 (31%), Positives = 234/498 (46%), Gaps = 54/498 (10%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
           D +V I G GLA L  A+SL E    V +   +  D+ S  AQ GIA      D I  HV
Sbjct: 4   DCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRHAQGGIAAAWSGEDDIEKHV 63

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE------LEGGHSHPRVFTI 116
            DT+ AG  + +E  V  ++S+   A  +L++ GV F  +        EGGH+  R+  +
Sbjct: 64  ADTLEAGAGLCNEAAVRTILSQGKPAIEWLLAQGVAFDRSHDGLHLTREGGHTCRRIAHV 123

Query: 117 KSETGKHVIP--ILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGEL------LKFDA 168
              TG+ V+   I++   R     + R    +I  ++G   G+ +          ++   
Sbjct: 124 ADYTGEAVMQSLIVQIRRRPNIRVYERQMALDIQTESGAACGLTVLDRRTQETYNIRASH 183

Query: 169 VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI----GRRTYL 224
            V+A GG   +Y  T    E  G  I      G  + ++EF+QFHPTG        RT+L
Sbjct: 184 TVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCAVENLEFIQFHPTGLARSSENGRTFL 243

Query: 225 ITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDA----RG 274
           I+EAVRG G  L    GERF+       EL  RD+VARAI  ++ +    F+      + 
Sbjct: 244 ISEAVRGEGGILTNQAGERFMPHYDRRAELAPRDIVARAIAAEIAKQTQDFVSLDISHQP 303

Query: 275 IEDFKDRFPYVYS-VLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEA 333
               +  FP ++   L + G+D  +  IPV PV HYT GGI  D   RT +  LYA+GE 
Sbjct: 304 AAFVRRHFPSIHRHCLSQCGLDITRQAIPVRPVQHYTCGGIQTDPCGRTSLPQLYALGET 363

Query: 334 ASNGFHGANRLASNSLLECVVSGLEVARTI-----LREEPKRGAN-----DAPYNFDELG 383
           A  G HGANRLASNSLLECVV+    A+ I      + EP +  +     +A    D+L 
Sbjct: 364 ACTGLHGANRLASNSLLECVVTARLCAQAIADGQAFQAEPFQRPSESLSAEAGIFSDDLQ 423

Query: 384 DVDS---IREIMWNHAGIVRDKSSLLEGLKKLEGVEADQ------------RLKVVAKAV 428
           +  S   ++     H GI+R+ + L   + +L+  + +Q             L   + AV
Sbjct: 424 NTFSRPVLQTFNQRHLGILRNDTGLRRAIAQLQLWKQNQAEPHTASEYENRNLLECSLAV 483

Query: 429 LTLALEREESRGSHYRRD 446
              A  R ++ G+H+  D
Sbjct: 484 AQAAYRRRQNIGAHFNSD 501


>pir||T51421 L-aspartate oxidase-like protein - Arabidopsis thaliana
           >gi|9755744|emb|CAC01875.1| (AL391149) L-aspartate
           oxidase-like protein [Arabidopsis thaliana]
           Length = 642
           
 Score =  184 bits (462), Expect = 2e-45
 Identities = 161/530 (30%), Positives = 235/530 (43%), Gaps = 83/530 (15%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPLVEGDSIRIHVLDTIR 67
           ++G G+AGL  A+ + ++G    I   +  +SN+  AQ G++  L   DS+  H+ DT+ 
Sbjct: 89  VIGSGVAGLRYALEVAKQGTVAVITKDEPHESNTNYAQGGVSAVLCPLDSVESHMRDTMV 148

Query: 68  AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPRVFTIKSET 120
           AG ++ DEE V  V ++  E    L++ G +F   E        EGGHSH R+      T
Sbjct: 149 AGAHLCDEETV--VCTEGPERIRELIAMGASFDHGEDGNLHLAREGGHSHCRIVHAADMT 206

Query: 121 GKHVI-PILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFLNGELLKF---DAVVVATGG 175
           G+ +   +LE    +  ++ F   F  ++      L  V    + L     +  ++A+GG
Sbjct: 207 GREIERALLEAVLNDPNISVFKHHFAIDLLTSQDGLNTVCHGVDTLNIKTNEVTLLASGG 266

Query: 176 FSGLYRFTAG--VKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR-----------RT 222
              +Y  T    V    G+ +   A     + +MEFVQFHPT                  
Sbjct: 267 AGHIYPSTTNPLVATGDGMAMAHRAQ--AVISNMEFVQFHPTALADEGLPIKLQTARENA 324

Query: 223 YLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAI--YLKMLEGKGVFLDA-- 272
           +LITEAVRG G  L     ERF+       EL  RDVVAR+I   LK    K V LD   
Sbjct: 325 FLITEAVRGDGGILYNLGMERFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH 384

Query: 273 RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGE 332
           +  E     FP + S   K G+D  +  IPV P AHY  GG+   +   T + GL+  GE
Sbjct: 385 KPREKILAHFPNIASECLKHGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVLGLFVAGE 444

Query: 333 AASNGFHGANRLASNSLLECVV---SGLEVARTILRE------EPKRGANDAPYNFDELG 383
            A  G HGANRLASNSLLE +V     ++ +  +++         ++           LG
Sbjct: 445 VACTGLHGANRLASNSLLEALVFARRAVQPSTELMKRTRLDVCASEKWTRPVVATARLLG 504

Query: 384 DV-------------DSIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD------------ 418
           D                ++E+MW + GIVR    L    +K+  +EA             
Sbjct: 505 DEVIAKIIALTKEVRRELQEVMWKYVGIVRSTIRLTTAERKIAELEAKWETFLFEHGWEQ 564

Query: 419 ----------QRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFERPS 458
                     + L   AK V++ AL R ESRG HY  DFPF+ +    P+
Sbjct: 565 TVVALEACEMRNLFCCAKLVVSSALARHESRGLHYMTDFPFVEESKRIPT 614


>gb|AAB34901.1| (S78630) succinate-ubiquinone oxidoreductase; fumarate reductase
           [Dirofilaria immitis] >gi|1582622|prf||2119194A fumarate
           reductase:SUBUNIT=flavoprotein [Dirofilaria immitis]
           Length = 646
           
 Score =  183 bits (460), Expect = 3e-45
 Identities = 159/543 (29%), Positives = 245/543 (44%), Gaps = 96/543 (17%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA+ L E G +V++I       S++  AQ G+   L  +  D  R H  D
Sbjct: 46  VVGAGGAGLRAAMGLSENGQNVAVITKLFPTRSHTVAAQGGVNAALGNMNPDDWRWHFYD 105

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHP------ 111
           T++   ++ D+  +  +  ++  A   + ++G+ F+  E         GG S+       
Sbjct: 106 TVKGSDWLGDQNAIHYMTREAVRAVIEMENYGMPFSRTEEGKIYQRSFGGQSNNFGKGGM 165

Query: 112 --RVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGELL 164
             R   +   TG  ++  L   + +     F+  F  ++ +  G+  G+      +G + 
Sbjct: 166 ARRTCCVADRTGHSMLHTLYGSSLQYNCRYFIEYFALDLLMDKGRCIGIIAMDLEDGSIH 225

Query: 165 KFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
           +F A   V+ATGG+   +          G     +   G+   DMEFVQFHPTG  G   
Sbjct: 226 RFRAKNTVIATGGYGRAFFSCTSAHTCTGDGTAMITRAGLQNSDMEFVQFHPTGIYGAGC 285

Query: 223 YLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARGI 275
            LITE  RG G  LV  +GERF+        +L +RDVV+RA+ ++++EG+GV  D   I
Sbjct: 286 -LITEGSRGEGGFLVNSEGERFMKKYAPNALDLASRDVVSRAMTIEIMEGRGVGKDKDHI 344

Query: 276 ---------EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR-- 323
                    +D   + P +  + +   G+D  K+ IPV P  HY MGGI  +   +    
Sbjct: 345 YLQLHHLPAKDLHAKLPGIMETAMIFAGVDAAKEPIPVLPTVHYNMGGIPTNYMGQVLTH 404

Query: 324 --------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR---------- 365
                   + GLYA GEAA++  HGANRL +NSLL+ VV G   A  IL           
Sbjct: 405 KRDKGDQLVPGLYACGEAAAHSVHGANRLGANSLLDLVVFGRACAIDILEKAKKSPEKIP 464

Query: 366 EEPKRGANDAPYNFDEL----GDVDS------IREIMWNHAGIVRDKSSLLEGLKKLEGV 415
           E P+        N D+L    GD+ +      +++ M  HA + R    L EG+ K+E +
Sbjct: 465 ELPENAGESTIANVDKLRFAKGDIPTAALRLKMQKTMQQHAAVFRRGDILKEGITKMEAL 524

Query: 416 EADQR-----------------------LKVVAKAVLTLALEREESRGSHYRRDFPFMRK 452
             +Q+                       L + A   +T A  R+ESRG+H R DFP    
Sbjct: 525 FKEQKLLKTTDRGLIWNSDLAETLELQNLMLNATQTITAAEARKESRGAHARDDFPTRID 584

Query: 453 EFE 455
           EF+
Sbjct: 585 EFD 587


>pir||T15398 hypothetical protein C03G5.1 - Caenorhabditis elegans
           >gi|1118081|gb|AAB37034.1| (U41555) Similar to succinate
           dehydrogenase flavoprotein subunit; coded for by C.
           elegans cDNA yk67c12.5; coded for by C. elegans cDNA
           yk127c12.5; coded for by C. elegans cDNA yk56g1.5; coded
           for by C. elegans cDNA yk15f12.5; coded for by C.
           elegans cD>
           Length = 646
           
 Score =  183 bits (460), Expect = 3e-45
 Identities = 162/536 (30%), Positives = 245/536 (45%), Gaps = 97/536 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA+ L E G+  ++I       S++  AQ GI   L  +  D+ R H  D
Sbjct: 47  VVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYD 106

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNEL-EGGH 108
           T++   ++ D++ +  +  ++  A   L ++G+ F+                N+   GG 
Sbjct: 107 TVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 166

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
           +H R   +   TG  ++  L   + +   N FV  F  ++ ++NG   GV      +G +
Sbjct: 167 AH-RTCCVADRTGHSLLHTLYGASLQYNCNYFVEYFALDLIMENGVCVGVIAMDLEDGTI 225

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F +   V+ATGG+   +          G      A  G+   DMEFVQFHPTG  G  
Sbjct: 226 HRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGINNSDMEFVQFHPTGIYGAG 285

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARG 274
             LITE  RG G  LV   GERF+        +L +RDVV+R++ ++++EG+GV  D   
Sbjct: 286 C-LITEGSRGEGGYLVNSAGERFMERYAPNAKDLASRDVVSRSMTVEIMEGRGVGPDKDH 344

Query: 275 I---------EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVD-----IF 319
           I         E  + R P +  + +   G+D  K+ IPV P  HY MGG+  +     + 
Sbjct: 345 IYLQLHHLPAEQLQQRLPGISETAMIFAGVDVTKEPIPVIPTVHYNMGGVPTNYKGQVLN 404

Query: 320 YRTR-----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------- 365
           Y  +     + GLYA GE  ++  HGANRL +NSLL+ V+ G   A  IL+         
Sbjct: 405 YTPKKGDEVVPGLYAAGECGAHSVHGANRLGANSLLDLVIFGRACAIDILKNTSAGVGVP 464

Query: 366 EEPKRGANDAPYNFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEGV 415
           E PK     +  N D+L    GD+       ++++ M NHA + R    L EG+K L  +
Sbjct: 465 ELPKNAGEASVANIDKLRHNKGDISTAELRLTMQKSMQNHAAVFRRGDILKEGVKVLSKL 524

Query: 416 EAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
             D                       Q L + A   +  A  REESRG+H R DFP
Sbjct: 525 YKDQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARDDFP 580


>sp|Q09508|DHSA_CAEEL SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
           MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
           COMPLEX II) >gi|7511659|pir||T41753 succinate
           dehydrogenase (ubiquinone) (EC 1.3.5.1), mitochondrial -
           Caenorhabditis elegans >gi|2282574|dbj|BAA21637.1|
           (D30651) flavoprotein subunit of complex II
           [Caenorhabditis elegans]
           Length = 646
           
 Score =  182 bits (458), Expect = 6e-45
 Identities = 161/536 (30%), Positives = 245/536 (45%), Gaps = 97/536 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA+ L E+G+  ++I       S++  AQ GI   L  +  D+ R H  D
Sbjct: 47  VVGAGGAGLRAAMGLAEEGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYD 106

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNEL-EGGH 108
           T++   ++ D++ +  +  ++  A   L ++G+ F+                N+   GG 
Sbjct: 107 TVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 166

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
           +H R   +   TG  ++  L   + +   N FV  F  ++ ++NG   GV      +G +
Sbjct: 167 AH-RTCCVADRTGHSLLHTLYGASLQYNCNYFVEYFALDLIMENGVCVGVIAMDLEDGTI 225

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F +   V+ATGG+   +          G      A  G+   DMEFVQFHPTG  G  
Sbjct: 226 HRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGISNSDMEFVQFHPTGIYGAG 285

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARG 274
             LITE  RG G  LV   GERF+        +L +RDVV+R++ ++++EG+GV  D   
Sbjct: 286 C-LITEGSRGEGGYLVNSSGERFMERYAPNSKDLASRDVVSRSMTVEIMEGRGVGPDKDH 344

Query: 275 I---------EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVD-----IF 319
           I         E  + R P +  + +   G+D  K+ IPV P  HY MGG+  +     + 
Sbjct: 345 IYLQLHHLPAEQLQQRLPGISETAMIFAGVDVTKEPIPVIPTVHYNMGGVPTNYKGQVLN 404

Query: 320 YRTR-----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------- 365
           Y  +     + GLYA GE  ++  HGANRL +NSLL+ V+ G   A  IL+         
Sbjct: 405 YTPKKGDEVVPGLYAAGECGAHSVHGANRLGANSLLDLVIFGRACAIDILKNTSAGVGGP 464

Query: 366 EEPKRGANDAPYNFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEGV 415
           E PK     +  N D+L     D+       ++++ M NHA + R    L EG+K L  +
Sbjct: 465 ELPKNAGEASVANIDKLRTTREDISTAELRLTMQKSMQNHAAVFRRGDILKEGVKVLSKL 524

Query: 416 EAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
             D                       Q L + A   +  A  REESRG+H R DFP
Sbjct: 525 YKDQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARDDFP 580


>gb|AAG19651.1| (AE005053) succinate dehydrogenase subunit A; SdhA [Halobacterium
           sp. NRC-1]
           Length = 615
           
 Score =  180 bits (453), Expect = 2e-44
 Identities = 135/400 (33%), Positives = 198/400 (48%), Gaps = 40/400 (10%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEGDSIR 59
           M + +V +VGGG AGL AAI+  E+G DV+I+       S++  A+ GI   L +GDS  
Sbjct: 1   MYEHDVIVVGGGGAGLRAAIAAQEEGADVAIVTKLHPVRSHTGAAEGGINAALRDGDSWE 60

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHPR 112
            H  DT++   Y+ D   +      + +    L   G+ F+  +         GG S PR
Sbjct: 61  DHAYDTMKGSDYLGDAPAIDTFAKTAPDEVIQLEHWGMPFSREDDGRVSQRPFGGLSFPR 120

Query: 113 VFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKN----------GKLAGVFLNG 161
                +ETG H++  L +   + G+  +   +V E+ + +          G +A    +G
Sbjct: 121 TTYAGAETGHHMLHTLYEQVVKRGIEVYDEWYVSELAVTDEDNPNDRECHGVVAWDVQSG 180

Query: 162 ELLKF---DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI 218
           E+  F   D+V++ATGG    +  T     N G  +      GVP+ DME +QFHPT  +
Sbjct: 181 EIAGFKASDSVILATGGIGQAFDHTTNAVANTGDGVAMAYRAGVPVEDMEMIQFHPTT-L 239

Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFV---------NELETRDVVARAIYLKMLEGKGV- 268
                LI+E VRG G  L  G+GERF+          EL +RDVV+RA   ++ EG+GV 
Sbjct: 240 PSTGVLISEGVRGEGGILYNGEGERFMFEHGYATNDGELASRDVVSRAELTEINEGRGVD 299

Query: 269 ----FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYR 321
               +LD R  G E   DR   +  + +  EG++  ++ +PV P  HY MGGI  + F  
Sbjct: 300 DEHIYLDMRHLGEERITDRLENILHLAEDFEGVNGLEEPMPVKPGQHYAMGGIETNEFGE 359

Query: 322 TRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVAR 361
           T + GLYA GE A    HGANRL  N+L E +V G    R
Sbjct: 360 TCVSGLYAAGECACVSLHGANRLGGNALPELIVFGALAGR 399


>dbj|BAA84681.1| (AB031741) succinate dehydrogenase [Trypanosoma cruzi]
           Length = 609
           
 Score =  180 bits (452), Expect = 3e-44
 Identities = 162/535 (30%), Positives = 236/535 (43%), Gaps = 95/535 (17%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGI--AFPLVEGDSIRIHVLD 64
           +VG G +GL AA+ +   G DV+ I       S++  AQ GI  A    E D  R HV D
Sbjct: 28  VVGAGGSGLRAAMGVAASGYDVACISKLYPSRSHTIAAQGGINAALDNCEEDDWRWHVYD 87

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE-GGHSH 110
           T++   ++ D++ +  +  ++    S L S G+ F              G  +  GG   
Sbjct: 88  TVKGSDWLGDQDAIQYMCQEAPCVVSELESMGLPFLRTKDGFIYQRAFGGQSIHFGGKQA 147

Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFVRGF-----VEEIGIKNGKLAGVFLNGELLK 165
            R       TG  ++  L   + + GVNF   +     + E G   G +A    +G + +
Sbjct: 148 RRTCAASDRTGHAMLHTLYGQSFQYGVNFFNEYYCLDLIVEDGCCRGVVAMSIDDGTIHR 207

Query: 166 FDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTY 223
           F +   ++ATGG+   +  T   K   G     +A  G+P  DMEFVQFHPTG  G    
Sbjct: 208 FRSKYTILATGGYGRCWFTTTSAKSCTGDGTAMVARAGLPAEDMEFVQFHPTGIYGPGV- 266

Query: 224 LITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-------VF 269
           LITE  RG G  LV  +GERF+        +L +RDVV RAI L++L G+G       V 
Sbjct: 267 LITEGARGEGGYLVNSEGERFMERYAPKAKDLASRDVVLRAITLEVLAGRGCGPKKDHVL 326

Query: 270 LDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISV----DIFYRT 322
           L    +  E   ++ P +  S     G+D  K+ IP+ P  HY MGGI      ++    
Sbjct: 327 LQLHHLPPEQLHEKLPGISESAHIFAGVDVTKESIPIVPTVHYNMGGIPTLWTGEVVSPR 386

Query: 323 R------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAP 376
                  + GL A GE A    HGANRL +NSLL+ VV G   A T++    K G N   
Sbjct: 387 NGDDDAIVPGLLAAGECACASVHGANRLGANSLLDIVVFGKSCANTVIFNLTKEGRNQPE 446

Query: 377 YNFD----ELGDVDSI----------------REIMWNHAGIVRDKSSLLEGLKKLEG-- 414
              D     + D+D I                +E M  +A + R + S+L+G   +E   
Sbjct: 447 LRPDAGESSIADLDGILHNKGDIPVARIRERMKETMALYAAVFRTEESMLKGQGIIEECY 506

Query: 415 -------------------VEADQRLKVVAKAVLTL--ALEREESRGSHYRRDFP 448
                              +EA +   ++  A+LT+  A  R ESRG+H R D+P
Sbjct: 507 RDYSHVFVHDKSPVWNSNLIEALELRNLLTNALLTITGAAVRRESRGAHARDDYP 561


>dbj|BAA31212.1| (AB015756) succinate dehydrogenase flavoprotein subunit
           [Rhodospirillum rubrum]
           Length = 594
           
 Score =  179 bits (450), Expect = 5e-44
 Identities = 161/537 (29%), Positives = 236/537 (42%), Gaps = 100/537 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL A   LVE+G+  + I       S++  AQ GI   L  +  D+ + H+ D
Sbjct: 15  VVGAGGAGLRATFGLVEQGLKTACITKVFPTRSHTVAAQGGIGAALGNMAEDNWKWHMYD 74

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSH------- 110
           T++   ++ D++ +  +  ++  A   L  +GV F+  E         GGH         
Sbjct: 75  TVKGADWLGDQDAIEYMCREAIPAVYELEHYGVPFSRTEDGRIYQRPFGGHMRNFGEAPV 134

Query: 111 PRVFTIKSETGKHVIPILEKHARELGVNFVRGFVE--------EIGIKNGKLAGVFLNGE 162
            R       TG  ++  L + +      F   FVE        E G+  G +A    +G 
Sbjct: 135 QRACAAADRTGHAILQTLYQQSLRFNAEF---FVEYFALDLIIEDGVCRGVIAWCMEDGT 191

Query: 163 LLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
           + +F +   V+ATGG+   Y          G   G +A  G+PL+DMEFVQFHPTG  G 
Sbjct: 192 IHRFKSHTTVLATGGYGRAYFSCTSAHTCTGDGNGMVARAGLPLQDMEFVQFHPTGIYGA 251

Query: 221 RTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKGV----- 268
              LITE  RG G  L   +GERF+        +L +RDVV+RA+ +++ EG+GV     
Sbjct: 252 GC-LITEGARGEGGYLTNSEGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVGPKKD 310

Query: 269 ----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV----DIF 319
                L+  G E    R P +    K   G+D  +D IPV P  HY MGGI      ++ 
Sbjct: 311 HINLHLEHLGPEVLHSRLPGITETAKVFSGVDATRDPIPVLPTVHYNMGGIPTNYHGEVL 370

Query: 320 YRTR------IRGLYAIGEAASNGFHGANRLASNSLLECVVSG-------LEVARTILRE 366
             T+        GL A+GE A    HGANRL +NSLL+ VV G        EV +  +  
Sbjct: 371 NPTKADPEAIFPGLMAVGECACVSVHGANRLGTNSLLDIVVFGRAAALRAAEVVKPGIAH 430

Query: 367 EPKR--GANDAPYNFDELGDV----------DSIREIMWNHAGIVRDKSSLLEGLKKLEG 414
           +P +   A+ A    D L             D +++ M   A + R   SL EG+ +++ 
Sbjct: 431 KPLKADAADLALSRLDRLRSAKGAKLTAEIRDDLQQAMQRDAAVFRTTKSLAEGVARVDQ 490

Query: 415 VEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
           V A                        + L   A+  +  A  R+ESRG+H   DFP
Sbjct: 491 VAASLADIKLVDTSMIFNTDLAEALELENLMACAQTTIHGAAARQESRGAHAHEDFP 547


>pir||G75456 succinate dehydrogenase, flavoprotein subunit - Deinococcus
           radiodurans (strain R1)
           >gi|6458673|gb|AAF10525.1|AE001947_8 (AE001947)
           succinate dehydrogenase, flavoprotein subunit
           [Deinococcus radiodurans]
           Length = 583
           
 Score =  179 bits (450), Expect = 5e-44
 Identities = 165/533 (30%), Positives = 247/533 (45%), Gaps = 92/533 (17%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
           +V +VG G AGL++A+   + GV V+ I       S++  AQ GI   L  ++ D    H
Sbjct: 6   DVIVVGAGGAGLMSALYAAKGGVSVACISKLYPTRSHTGAAQGGIGAALGNIQEDHWEWH 65

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSH-GVTFT-------GNELEGGHSHP-- 111
           + DTI+ G Y+ D++    V SK      + + H G+ F+            GGH+    
Sbjct: 66  MFDTIKGGDYLTDQDAA-EVFSKDIIEVVYELEHMGLPFSRTPEGKIAQRKFGGHTRDFG 124

Query: 112 -----RVFTIKSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKNGKLAGV----FLNG 161
                R    K  TG  ++  L +   + G  F   F V ++ I++G+  GV       G
Sbjct: 125 KAAVERSCYAKDRTGHMILQTLYQQNVKAGTLFFNEFHVTDLIIEDGRCRGVVAYDLATG 184

Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
           EL  F A  V++A GG+  +++ T+      G L+     KG+PL+DMEF QFHPTG + 
Sbjct: 185 ELHTFHAKAVILAAGGYGRVFKITSNALTLTGDLMSIYYRKGLPLQDMEFYQFHPTG-LA 243

Query: 220 RRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGVFLDA 272
           +   L+TE +RG G  L   +GERF       + +L  RD+VAR++  ++ EG+GV  D 
Sbjct: 244 KLGILVTEGIRGEGGILRNSNGERFMERYAPTIKDLAPRDIVARSMTTEIREGRGVGKDK 303

Query: 273 RGI---------EDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDI---- 318
             I         E  + +   +  + +   G DP KDL+ V P AHY MGGI  D+    
Sbjct: 304 DAIHIDLTHLPREVIEGKLAEITDLARTYLGQDPVKDLVMVQPTAHYAMGGIPTDLNGLC 363

Query: 319 ---FYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR--------EE 367
                   I GLYA GE A    HGANRL +NSL + VV G    R            E 
Sbjct: 364 LSDGNGGSIEGLYAAGEQACVSLHGANRLGTNSLGDLVVFGRRAGRYAAEYAKQVEYAEM 423

Query: 368 PKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVR---DKSSLLEGLKKLE- 413
           P+    ++   FD+L               ++E M  + GI R   D +  +E +K+L+ 
Sbjct: 424 PENAEAESRRVFDDLRAASGKDNAAAIRKELQETMMRNVGIFRNGPDMAKQVEIIKELKT 483

Query: 414 -----GV---------EADQRLKV-----VAKAVLTLALEREESRGSHYRRDF 447
                GV         E  + L++      A+A+ + A+ R ESRG+H R DF
Sbjct: 484 RYKNVGVSDTNARYNSELVEALELGFMLDCAEAMASSAVNRTESRGAHDREDF 536


>pir||E70843 probable flavoprotein subunit of succinate dehydrogenase -
           Mycobacterium tuberculosis (strain H37RV)
           >gi|2894228|emb|CAA17090.1| (AL021841) sdhA
           [Mycobacterium tuberculosis]
           Length = 590
           
 Score =  179 bits (449), Expect = 7e-44
 Identities = 157/535 (29%), Positives = 239/535 (44%), Gaps = 92/535 (17%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHV 62
           +V IVG G AG+ AA+    +     +       S++  AQ G+   L  VE D+   H 
Sbjct: 8   DVVIVGAGGAGMRAAVEAGPRVRTAVLTKLYPTRSHTGAAQGGMCAALANVEDDNWEWHT 67

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHP---- 111
            DT++ G Y+ D++ V  +  ++ +A   L   G+ F             GGH+      
Sbjct: 68  FDTVKGGDYLADQDAVEIMCKEAIDAVLDLEKMGMPFNRTPEGRIDQRRFGGHTRDHGKA 127

Query: 112 ---RVFTIKSETGKHVIPILEKHARELGVNFVRGF---------VEEIGIKNGKLAGVFL 159
              R       TG  ++  L ++  +  V F   F              +  G +A    
Sbjct: 128 PVRRACYAADRTGHMILQTLYQNCVKHDVEFFNEFYALDLALTQTPSGPVATGVIAYELA 187

Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
            G++  F A  VV+ATGG   +Y+ T+      G  IG +  KG+PL DMEF QFHPTG 
Sbjct: 188 TGDIHVFHAKAVVIATGGSGRMYKTTSNAHTLTGDGIGIVFRKGLPLEDMEFHQFHPTGL 247

Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG--- 267
            G    LI+EAVRG G +L+ G+GERF+        +L  RD+VAR++ L++LEG+G   
Sbjct: 248 AG-LGILISEAVRGEGGRLLNGEGERFMERYAPTIVDLAPRDIVARSMVLEVLEGRGAGP 306

Query: 268 ----VFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDIFY 320
               V++D R  G E  + + P +    +   G+DP  +L+PV P  HY MGGI   +  
Sbjct: 307 LKDYVYIDVRHLGEEVLEAKLPDITEFARTYLGVDPVTELVPVYPTCHYLMGGIPTTVTG 366

Query: 321 R------TRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGAND 374
           +      + + GLYA GE A    HGANRL +NSLL+  V G                 D
Sbjct: 367 QVLRDNTSVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAASYAQGHDFVD 426

Query: 375 APYN-----------------FDELGDV-DSIREIMWNHAGIVRDKSSLLEGLKKLEGV- 415
            P N                  + + D+  ++++ M N+A + R + +L + L  +  + 
Sbjct: 427 MPPNPEAMVVGWVSDILSEHGNERVADIRGALQQSMDNNAAVFRTEETLKQALTDIHALK 486

Query: 416 EADQRLKV----------------------VAKAVLTLALEREESRGSHYRRDFP 448
           E   R+ V                      +A+  +  AL R+ESRG H R D+P
Sbjct: 487 ERYSRITVHDKGKRFNTDLLEAIELGFLLELAEVTVVGALNRKESRGGHAREDYP 541


>pir||T32885 hypothetical protein C34B2.7 - Caenorhabditis elegans
           >gi|2804418|gb|AAB97539.1| (AF043693) similar to the
           flavoprotein subunit of succinate dehydrogenase
           [Caenorhabditis elegans]
           Length = 640
           
 Score =  178 bits (448), Expect = 9e-44
 Identities = 163/546 (29%), Positives = 244/546 (43%), Gaps = 102/546 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA+ L E G+  ++I       S++  AQ G+   L  +  D+ R H  D
Sbjct: 40  VVGAGGAGLRAAMGLSEGGMKTAVITKLFPTRSHTVAAQGGVNAALGNMNPDNWRWHFYD 99

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNEL-EGGH 108
           T++   ++ D++ +  +  ++  A   L ++G+ F+                N+   GG 
Sbjct: 100 TVKGSDWLGDQDAIHYMTREAERAIIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 159

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
           +H R   +   TG  ++  L   + +   N FV  F  ++ +  GK  GV       G++
Sbjct: 160 AH-RTCCVADRTGHSLLHTLYGASLQYDCNYFVEYFALDLIMDKGKCIGVVALDIETGQI 218

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F A   V+ATGG+   Y          G      A  G+   DMEFVQFHPTG  G  
Sbjct: 219 HRFRAKNTVLATGGYGRAYFSCTSAHTCTGDGTALTARAGIRNSDMEFVQFHPTGIYGVG 278

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV------ 268
             LITE  RG G  LV   GERF+        +L +RDVV+RA+ +++ EG+GV      
Sbjct: 279 C-LITEGSRGEGGYLVNSQGERFMERYAPNAKDLASRDVVSRAMTMEINEGRGVGPNKDH 337

Query: 269 -FLDARGI--EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR- 323
            +L    +  E  + R P +    +   G+D  K+ IPV P  HY MGG+  +  Y+ + 
Sbjct: 338 IYLQLHHLPAEQLQQRLPGISETAQIFAGVDVTKEPIPVIPTVHYNMGGVPTN--YKGQV 395

Query: 324 -----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE-EPKRG 371
                      I GLYA GE A++  HGANRL +NSLL+ V+ G   A TIL E +P   
Sbjct: 396 LDFTPEGGDKVIPGLYAAGECAAHSVHGANRLGANSLLDLVIFGRSCALTILNENKPGDS 455

Query: 372 ANDAPYNFDE------------LGDVDSI------REIMWNHAGIVRDKSSLLEGLKKLE 413
             + P N +E             GD+ SI      +  M  HA + R    L EG+ K+ 
Sbjct: 456 IPELPVNCEEKSCDNLNGLLHSKGDISSIELRQKMQMTMQKHAAVFRRGDLLKEGVDKMS 515

Query: 414 GVEADQR------------------------LKVVAKAVLTLALEREESRGSHYRRDFPF 449
            +  +Q+                        L + A   +  A  R ESRG+H R DF  
Sbjct: 516 SIYKEQQNLKACADSGKVWNSELVETLELQNLLINANQTIVAAENRTESRGAHARDDFQE 575

Query: 450 MRKEFE 455
              E++
Sbjct: 576 RIDEYD 581


>gb|AAF21611.1|AF018287_5 (AF018287) SdhA; succinate dehydrogenase flavoprotein subunit
           [papaya bunchy top disease rickettsia]
           Length = 596
           
 Score =  178 bits (448), Expect = 9e-44
 Identities = 164/540 (30%), Positives = 257/540 (47%), Gaps = 99/540 (18%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
           +V +VG G AGL AA  + ++G++ + I       S++  AQ GI+  L  +  D  R H
Sbjct: 13  DVIVVGAGGAGLRAAFGMAKEGLNTACISKLFPTRSHTVAAQGGISAALGNMGADDWRWH 72

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEG--------------- 106
           + DT++   ++ D++ +  +   + +A   L  +GV F+  E EG               
Sbjct: 73  MYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTE-EGKIYQRPFGGMTTEYG 131

Query: 107 -GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----N 160
            G +  R       TG  ++  L + + +  V F +  F  ++ +++G+  GV      +
Sbjct: 132 KGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLMEDGECRGVVAWNLDD 191

Query: 161 GELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALK-GVPLRDMEFVQFHPTGF 217
           G L  F A  VV+ATGG+   Y F+A          G +A++ G+PL+DMEFVQFHPTG 
Sbjct: 192 GSLHCFRAHNVVLATGGYGRAY-FSATSAHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGI 250

Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-- 268
                 LITE  RG G  LV  +GERF+        +L +RDVV+RA+ +++ EG+GV  
Sbjct: 251 YSAGC-LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGE 309

Query: 269 -------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF- 319
                   L+    E    R P +    K   G+D  K+ IPV P  HY MGGI  +   
Sbjct: 310 HKDHVFLHLNHLSPEILHSRLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHG 369

Query: 320 ---------YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG----LEVARTILRE 366
                    + + ++GL +IGEAA    HGANRL SNSLL+ VV G    L+ A  I   
Sbjct: 370 QVIIKDGKNHNSVVKGLMSIGEAACVSVHGANRLGSNSLLDLVVFGRSAALKAAELIKPA 429

Query: 367 EPKRGANDAPY-----NFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKK 411
            P +  ++         FD++    G++        ++  M +HA + R +  L EG K 
Sbjct: 430 SPHKPVSEEALEKIVSRFDKIRHSSGNISVADLRLKMQRTMQSHASVFRTQEVLNEGAKM 489

Query: 412 L---------------------EGVEADQRLKVVAKAVLTL--ALEREESRGSHYRRDFP 448
           +                     + VEA +   ++ +A++T+  A  R+ESRG+H R D+P
Sbjct: 490 ISEIRSSYKDIKINDRSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYP 549


>gi|4759080 succinate dehydrogenase complex, subunit A, flavoprotein precursor;
           succinate dehydrogenase complex flavoprotein subunit
           precursor [Homo sapiens] >gi|347134|gb|AAA20683.1|
           (L21936) succinate dehydrogenase flavoprotein subunit
           [Homo sapiens]
           Length = 664
           
 Score =  177 bits (445), Expect = 2e-43
 Identities = 163/551 (29%), Positives = 247/551 (44%), Gaps = 104/551 (18%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  +VG G AGL AA  L E G + + +       S++  AQ GI   L  +E D+ R
Sbjct: 61  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
            H  DT++   ++ D++ +  +  ++  A   L ++G+ F+  E                
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180

Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
            +GG +H R   +   TG  ++  L   +     + FV  F  ++ ++NG+  GV     
Sbjct: 181 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 239

Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
            +G + +  A   VVATGG+   Y        + G     +   G+P +D+EFVQFHPTG
Sbjct: 240 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTG 299

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
             G    LITE  RG G  L+   GERF+        +L +RDVV+R++ L++ EG+G  
Sbjct: 300 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCG 358

Query: 268 -----VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
                V+L    +  E    R P +  + +   G+D  K+ IPV P  HY MGGI  +  
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN-- 416

Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP 368
           Y+ ++            GLYA GEAA    HGANRL +NSLL+ VV G   A +I  EE 
Sbjct: 417 YKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI--EES 474

Query: 369 KRGANDAP-----------YNFDELGDVD----------SIREIMWNHAGIVRDKSSLLE 407
            R  +  P            N D+L   D          S+++ M NHA + R  S L E
Sbjct: 475 CRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQE 534

Query: 408 GLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYR 444
           G  K+  +  D                       Q L + A   +  A  R+ESRG+H R
Sbjct: 535 GCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAR 594

Query: 445 RDFPFMRKEFE 455
            D+     E++
Sbjct: 595 EDYKVRIDEYD 605


>sp|P31040|DHSA_HUMAN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
           MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
           COMPLEX II) >gi|625366|pir||JX0336 succinate
           dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
           chain precursor, mitochondrial - human
           >gi|506338|dbj|BAA06332.1| (D30648) flavoprotein subunit
           of complex II [Homo sapiens]
           Length = 664
           
 Score =  177 bits (445), Expect = 2e-43
 Identities = 163/551 (29%), Positives = 247/551 (44%), Gaps = 104/551 (18%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  +VG G AGL AA  L E G + + +       S++  AQ GI   L  +E D+ R
Sbjct: 61  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
            H  DT++   ++ D++ +  +  ++  A   L ++G+ F+  E                
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180

Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
            +GG +H R   +   TG  ++  L   +     + FV  F  ++ ++NG+  GV     
Sbjct: 181 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 239

Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
            +G + +  A   VVATGG+   Y        + G     +   G+P +D+EFVQFHPTG
Sbjct: 240 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTG 299

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
             G    LITE  RG G  L+   GERF+        +L +RDVV+R++ L++ EG+G  
Sbjct: 300 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCG 358

Query: 268 -----VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
                V+L    +  E    R P +  + +   G+D  K+ IPV P  HY MGGI  +  
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN-- 416

Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP 368
           Y+ ++            GLYA GEAA    HGANRL +NSLL+ VV G   A +I  EE 
Sbjct: 417 YKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI--EES 474

Query: 369 KRGANDAP-----------YNFDELGDVD----------SIREIMWNHAGIVRDKSSLLE 407
            R  +  P            N D+L   D          S+++ M NHA + R  S L E
Sbjct: 475 CRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQE 534

Query: 408 GLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYR 444
           G  K+  +  D                       Q L + A   +  A  R+ESRG+H R
Sbjct: 535 GCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAR 594

Query: 445 RDFPFMRKEFE 455
            D+     E++
Sbjct: 595 EDYKVRIDEYD 605


>dbj|BAA21636.1| (D30650) flavoprotein subunit of complex II [Ascaris suum]
           Length = 645
           
 Score =  176 bits (441), Expect = 6e-43
 Identities = 160/547 (29%), Positives = 245/547 (44%), Gaps = 99/547 (18%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGI--AFPLVEGDSIRIH 61
           +V I+G G AGL AA+ L E G   +++       S++  AQ GI  A   +  D  + H
Sbjct: 43  DVVIIGAGGAGLRAAMGLGEAGFKTAVVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWH 102

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---------------GNELEG 106
             DT +   ++ D+  +  +   + EA + L + G+ F+                N    
Sbjct: 103 FYDTAKGSDWLGDQNAMHYLTRNAVEAVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGK 162

Query: 107 GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NG 161
           G    R   +   TG  ++  L  ++      F +  F  ++ +  G+  GV      +G
Sbjct: 163 GGVAKRTCCVADRTGHSMLHTLYGNSLRCHCTFFIEYFALDLLMDKGRCVGVIALCLEDG 222

Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
            + +F +   +VATGG+   Y        N G         G+ L D+EF+QFHPTG  G
Sbjct: 223 TIHRFRSKRTIVATGGYGRAYFSCTTAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYG 282

Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDA 272
               LITE  RG G  LV  +GERF+        +L +RDVV+RA  ++++EG+GV  + 
Sbjct: 283 VGC-LITEGSRGEGGFLVNSEGERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEK 341

Query: 273 RGI---------EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT 322
             I         E    R P +    K   G+D  K+ IPV P  HY MGGI  +  Y+ 
Sbjct: 342 DHIYLQLHHLPAEQLHQRLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGIPTN--YKA 399

Query: 323 RI------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTI------- 363
           ++             GLYA GE A +  HGANRL +NSLL+ VV G   +  I       
Sbjct: 400 QVIKYTKEGGDKIVPGLYACGECACHSVHGANRLGANSLLDAVVFGRACSINIKEELKPD 459

Query: 364 --LREEPKRGANDAPYNFDEL----GDVD------SIREIMWNHAGIVRDKSSLLEGLKK 411
             + E P+    ++  N D +    GDV       ++++ M  HAG+ R    L EG+KK
Sbjct: 460 EKIPELPEGAGEESIANLDAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDILAEGVKK 519

Query: 412 LEGVEAD-QRLKVVAKAV-----LTLALE-----------------REESRGSHYRRDFP 448
           +  +  + +RLK   +++     LT +LE                 R+ESRG+H R DFP
Sbjct: 520 MMDLSKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKESRGAHARDDFP 579

Query: 449 FMRKEFE 455
               E++
Sbjct: 580 KREDEYD 586


>gb|AAG20080.1| (AE005087) L-aspartate oxidase; NadB [Halobacterium sp. NRC-1]
           Length = 509
           
 Score =  176 bits (441), Expect = 6e-43
 Identities = 150/495 (30%), Positives = 229/495 (45%), Gaps = 58/495 (11%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSII--GPKSKDSNSYLAQAGIAFPLVEGDSIRIHV 62
           +V ++G G+AG  AA++   +G  V +     +  D+++  AQ GIA    + +S++   
Sbjct: 8   DVLVLGSGIAGCGAALAAAREGASVLVATKAQQPADASTDWAQGGIATTRDDPESLK--- 64

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLV--SHGVTFTGNE-----LEGGHSHPRVFT 115
            D + AG    D E V  ++  +  A   ++  + GV F G E      E  HS  R+  
Sbjct: 65  RDILAAGDGEADPEAVDALVGDAAAAVEDVLVDTLGVPFDGEEGFDYAREAAHSAARILH 124

Query: 116 IKSETGKHVI-PILEKHARELGVNFVRGFVE-EIGIKNGKLAGVFLN-----------GE 162
           + + TG H++ P L        V+ +      ++    G + G  L+           G 
Sbjct: 125 VDAATGHHILGPFLRHLDAHENVDMLEDAAALDLITDEGAVTGALLDRNPRTGDRAETGV 184

Query: 163 LLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
            +   + V+ATGG   LYR +   + + G  +   AL G  + D E+VQFHPT +     
Sbjct: 185 PVFAGSTVLATGGIGDLYRRSTNPRGSTGDGVAMAALAGADVTDAEYVQFHPTAYDDADP 244

Query: 223 YLITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDARGIE 276
           +L++EAVRG GA L   DGERF+       EL  RDVVARA+  +      V LD   + 
Sbjct: 245 FLVSEAVRGEGALLRNADGERFMPDYHEDAELAPRDVVARAVAAERDATGEVRLDVSPLA 304

Query: 277 DFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASN 336
            F + FP +       G+D  +  IPV P  H+  GG++VD   RT +  L+A+GE A  
Sbjct: 305 -FAEEFPGLAEACADRGVD-WETGIPVAPCEHFLCGGVAVDTVGRTSLDRLFAVGECART 362

Query: 337 GFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAPYNFDELGDVDS--------- 387
           G HGANRLAS SLLE +V GL    T   ++     ++ P   D   D+           
Sbjct: 363 GVHGANRLASTSLLEGLVWGLRAGETAAGDDRAPAPSEPPELRDRDPDLPDGFAAEKFRR 422

Query: 388 IREIMWNHAGIVRDKSSLLEG---LKKLEG-VEADQRLK------------VVAKAVLTL 431
           +R +M  H G+ R  + L      L++L+G V++  R +            VV   +   
Sbjct: 423 LRRVMDEHVGLRRTGADLQRAQGVLRRLKGEVDSYARTRTSRDLYQLRNAAVVGLLIARA 482

Query: 432 ALEREESRGSHYRRD 446
           A E  ES G H+R D
Sbjct: 483 AGENPESAGCHHRSD 497


>gb|AAD51006.1| (AF171030) succinate dehydrogenase flavoprotein subunit [Homo
           sapiens]
           Length = 664
           
 Score =  174 bits (436), Expect = 2e-42
 Identities = 162/551 (29%), Positives = 245/551 (44%), Gaps = 104/551 (18%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  +VG G AGL AA  L E G + + +       S++  AQ GI   L  +E D+ R
Sbjct: 61  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
            H  DT++   ++ D++ +  +  ++  A   L ++G+ F+  E                
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180

Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
            +GG +H R   +   TG  ++  L   +     + FV  F  ++ ++NG+  GV     
Sbjct: 181 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 239

Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
            +G + +  A   VVATGG+   Y        + G     +   G+P +D+EFVQFHPTG
Sbjct: 240 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTG 299

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
             G    LITE  RG G  L+   GERF+        +L +RDVV+R++ L++ EG+   
Sbjct: 300 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRDCG 358

Query: 268 -----VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
                V+L    +  E    R P +  + +   G+D  KD IPV P  HY MGGI  +  
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKDPIPVLPTVHYNMGGIPTN-- 416

Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEP 368
           Y+ ++            GLYA GEAA    HGANRL +NSLL+ VV G   A +I  EE 
Sbjct: 417 YKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI--EES 474

Query: 369 KRGANDAP-----------YNFDELGDVD----------SIREIMWNHAGIVRDKSSLLE 407
            R  +  P            N D+L   D          S+++ M NHA + R  S L E
Sbjct: 475 CRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQE 534

Query: 408 GLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYR 444
           G  K+  +  D                       Q L + A   +  A  R+ESRG+H R
Sbjct: 535 GCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGTHAR 594

Query: 445 RDFPFMRKEFE 455
             +     E++
Sbjct: 595 EGYKVQIDEYD 605


>pir||E83448 succinate dehydrogenase (A subunit) PA1583 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9947546|gb|AAG04972.1|AE004586_10 (AE004586)
           succinate dehydrogenase (A subunit) [Pseudomonas
           aeruginosa]
           Length = 590
           
 Score =  174 bits (436), Expect = 2e-42
 Identities = 159/537 (29%), Positives = 234/537 (42%), Gaps = 99/537 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEGD---SIRIHVL 63
           IVGGG AG+ AA+ L + G   +++       S++  AQ GI   +   D     R H+ 
Sbjct: 13  IVGGGGAGMRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMY 72

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHP------------ 111
           DT++   YI D++ +  + S   EA   L   G+ F+  E    +  P            
Sbjct: 73  DTVKGSDYIGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGG 132

Query: 112 ---RVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKN--GKLAGVFL----NGE 162
              R       TG  ++  L +   + G +F+  +     +KN  G + G+       GE
Sbjct: 133 QAARTCAAADRTGHALLHTLYQANLKNGTSFLNEWYAVDLVKNQDGAVVGIIAICIETGE 192

Query: 163 L--LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
              ++  AVV+ATGG   +Y  T     N G  +G     GVP++D+E  QFHPTG  G 
Sbjct: 193 TVYIRSKAVVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGA 252

Query: 221 RTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKGV----- 268
              L+TE  RG G  L+   GERF+        +L  RDVVAR++  ++L G GV     
Sbjct: 253 GV-LVTEGCRGEGGYLINAHGERFMERYAPNAKDLAGRDVVARSMVKEVLAGNGVGPNKD 311

Query: 269 ----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT- 322
                LD  G E    R P +  + K    +DP    IPV P  HY MGG++ +I  +  
Sbjct: 312 HVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVIPTCHYMMGGVATNIHGQAI 371

Query: 323 ---------RIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEPK 369
                     + GL+A+GE A    HGANRL  NSLL+ VV    +GL + + +      
Sbjct: 372 TQDANGNDQIVEGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIDA 431

Query: 370 RGA--NDAPYNFDELGDVD-------------SIREIMWNHAGIVRDKSSLLEGLKKL-- 412
           RGA  +D   +F  L  V+              ++  M N+ G+ R    + +G+ +L  
Sbjct: 432 RGASESDLEASFKRLNGVNERTSGEEVAPLKRELQSCMQNYFGVFRTGEYMQKGIAQLAD 491

Query: 413 ----------------------EGVEADQRLKVVAKAVLTLALEREESRGSHYRRDF 447
                                 E +E  Q L  VA+A    A  R+ESRG+H R DF
Sbjct: 492 LRERIANVKINDKSQAFNTARIEALEL-QNLLEVAEATAIAAEHRKESRGAHAREDF 547


>sp|P20922|FRDA_PROVU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|66068|pir||RDEBFV
           fumarate reductase (EC 1.3.99.1) flavoprotein - Proteus
           vulgaris >gi|581487|emb|CAA29501.1| (X06144) frdA (AA
           1-598) [Proteus vulgaris]
           Length = 598
           
 Score =  173 bits (435), Expect = 3e-42
 Identities = 166/540 (30%), Positives = 238/540 (43%), Gaps = 107/540 (19%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
           ++ I+G G AGL AAI+  E    + I     + P    S++  A+ G A      DS  
Sbjct: 7   DIAIIGAGGAGLRAAIAAAEANPQLKIALISKVYPMR--SHTVAAEGGSAAVTQAHDSYD 64

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPR 112
            H  DT+  G ++ +++VV   +       + L   G  ++  E         GG    R
Sbjct: 65  FHFNDTVSGGDWLCEQDVVDYFVEHCPTEMTQLELWGCPWSRKEDGSVNVRRFGGMKIER 124

Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGVFLNGEL------L 164
            +    +TG H++  L + + +      F   FV +I +  G   GV     +      +
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDEGHARGVVAINMMEGTKVQI 184

Query: 165 KFDAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
           + +AV++ATGG   +YRF      N G++ GD   +AL+ GVPLRDMEFVQ+HPTG  G 
Sbjct: 185 RANAVIMATGGAGRVYRFNT----NGGIVTGDGMGIALRHGVPLRDMEFVQYHPTGLPGS 240

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIY--- 259
              L+TE  RG G  LV  DG R++                   EL  RD V++A +   
Sbjct: 241 GI-LMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGKPENKYMELGPRDKVSQAFWHEW 299

Query: 260 -----LKMLEGKGVFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
                +K   G  V LD R  G +   +R P++  + K   G+DP  + IPV P AHYTM
Sbjct: 300 RAGRTIKTHRGDVVHLDLRHLGAKKLHERLPFICELAKAYVGVDPVNEPIPVRPTAHYTM 359

Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREE 367
           GGI  +    TRI+GL+A+GE +S G HGANRL SNSL E VV    +G E  R      
Sbjct: 360 GGIETNQRTETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEEAVRRAQEAT 419

Query: 368 PKRGA------NDAPYNFDELGDV----------DSIREIMWNHAGIVRDKSSLLEGLKK 411
           P   +       D   N  +L +           D + E M    GI R    + + + K
Sbjct: 420 PANASALDAQTRDIEDNLKKLMNQKGSENWAQIRDEMGEAMEEGCGIYRTPELMQKTIDK 479

Query: 412 LEGVEADQRLK-------------------------VVAKAVLTLALEREESRGSHYRRD 446
           L   E  +R K                          VA+ +   A  R+ESRG+H R D
Sbjct: 480 L--TELKERFKHVEIKDTSSVFNTDLLYKIELGFGLDVAECMAHSAFNRKESRGAHQRLD 537


>gb|AAD01243.1| (AF005272) fumarate reductase flavoprotein subunit homolog
           [Haemophilus paragallinarum]
           Length = 382
           
 Score =  173 bits (434), Expect = 4e-42
 Identities = 137/389 (35%), Positives = 194/389 (49%), Gaps = 58/389 (14%)

Query: 39  SNSYLAQAGIAFPLVEGDSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVT 98
           S++  A+ G A  + E DS   H  DT+  G ++ +++VV   +  S    + L   G  
Sbjct: 3   SHTVAAEGGAAAVIKEEDSYEKHFHDTVAGGDWLCEQDVVEYFVEHSPVEMTQLERWGCP 62

Query: 99  FTGNE-------LEGGHSHPRVFTIKSETGKHVIPILEKHAREL------GVNFVRGFVE 145
           ++  E         GG    R +    +TG H++  L + + +         +FV   + 
Sbjct: 63  WSRKEDGDVNVRRFGGMKIERTWFAADKTGFHLLHTLFQTSMQFPQIQRFDEHFVLDILV 122

Query: 146 EIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGD---LALK 200
           + G   G +A   + G L++ +A  VV+ATGG    +RF      N G++ GD   +A +
Sbjct: 123 DDGHARGMVAMNMMEGTLVQINANAVVIATGGGCRAFRFNT----NGGIVTGDGLSMAYR 178

Query: 201 -GVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN------------- 246
            GVPLRDMEFVQ+HPTG +     L+TE  RG G  LV  DG R++              
Sbjct: 179 HGVPLRDMEFVQYHPTG-LPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIGKP 237

Query: 247 -----ELETRDVVARAIYLKMLEG------KGV---FLDAR--GIEDFKDRFPYVYSVLK 290
                EL  RD V++A + +  +G      KGV    LD R  G +   +R P++  + K
Sbjct: 238 ENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELAK 297

Query: 291 K-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSL 349
             EG+DP K  IPV PV HYTMGGI VD    TRI+GL+A+GE AS+G HGANRL SNSL
Sbjct: 298 AYEGVDPAKAPIPVRPVVHYTMGGIEVDFNSETRIKGLFAVGECASSGLHGANRLGSNSL 357

Query: 350 LECVVSGLEVARTILREEPKRGANDAPYN 378
            E VV G    R       +R A  +P N
Sbjct: 358 AELVVLG----RVAGEYAAQRAAEASPAN 382


>sp|P00363|FRDA_ECOLI FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|66067|pir||RDECFF
           fumarate reductase (EC 1.3.99.1) flavoprotein -
           Escherichia coli >gi|536998|gb|AAA97053.1| (U14003)
           fumarate reductase, flavoprotein subunit [Escherichia
           coli] >gi|1790597|gb|AAC77114.1| (AE000487) fumarate
           reductase, anaerobic, flavoprotein subunit [Escherichia
           coli K12]
           Length = 602
           
 Score =  173 bits (433), Expect = 5e-42
 Identities = 163/538 (30%), Positives = 246/538 (45%), Gaps = 103/538 (19%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
           ++ IVG G AGL AAI+  +   +  I     + P    S++  A+ G A    + DS  
Sbjct: 7   DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR--SHTVAAEGGSAAVAQDHDSFE 64

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPR 112
            H  DT+  G ++ +++VV   +       + L   G  ++            GG    R
Sbjct: 65  YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 124

Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGV----FLNGELLKF 166
            +    +TG H++  L + + +      F   FV +I + +G + G+     + G L++ 
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQI 184

Query: 167 --DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
             +AVV+ATGG   +YR+      N G++ GD   +AL  GVPLRDMEFVQ+HPTG  G 
Sbjct: 185 RANAVVMATGGAGRVYRYNT----NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS 240

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLKM 262
              L+TE  RG G  LV  +G R++                   EL  RD V++A + + 
Sbjct: 241 GI-LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEW 299

Query: 263 LEGKG--------VFLDARGIEDFK--DRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
            +G          V+LD R + + K  +R P++  + K   G+DP K+ IPV P AHYTM
Sbjct: 300 RKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTM 359

Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEPKR 370
           GGI  D    TRI+GL+A+GE +S G HGANRL SNSL E VV G L   +   R     
Sbjct: 360 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAG 419

Query: 371 GANDAPYNFDELGDVDSIREI-------------------MWNHAGIVRDKSSLLEGLKK 411
             N+A       G    ++++                   M    GI R    + + + K
Sbjct: 420 NGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 479

Query: 412 L-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
           L E  E  +R+++                      VA+ +   A+ R+ESRG+H R D
Sbjct: 480 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537


>pdb|1FUM|A Chain A, Structure Of The E. Coli Fumarate Reductase Respiratory
           Complex >gi|5542239|pdb|1FUM|M Chain M, Structure Of The
           E. Coli Fumarate Reductase Respiratory Complex
           Length = 601
           
 Score =  173 bits (433), Expect = 5e-42
 Identities = 163/538 (30%), Positives = 246/538 (45%), Gaps = 103/538 (19%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
           ++ IVG G AGL AAI+  +   +  I     + P    S++  A+ G A    + DS  
Sbjct: 6   DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR--SHTVAAEGGSAAVAQDHDSFE 63

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPR 112
            H  DT+  G ++ +++VV   +       + L   G  ++            GG    R
Sbjct: 64  YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 123

Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGV----FLNGELLKF 166
            +    +TG H++  L + + +      F   FV +I + +G + G+     + G L++ 
Sbjct: 124 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQI 183

Query: 167 --DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
             +AVV+ATGG   +YR+      N G++ GD   +AL  GVPLRDMEFVQ+HPTG  G 
Sbjct: 184 RANAVVMATGGAGRVYRYNT----NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS 239

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLKM 262
              L+TE  RG G  LV  +G R++                   EL  RD V++A + + 
Sbjct: 240 GI-LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEW 298

Query: 263 LEGKG--------VFLDARGIEDFK--DRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
            +G          V+LD R + + K  +R P++  + K   G+DP K+ IPV P AHYTM
Sbjct: 299 RKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTM 358

Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEPKR 370
           GGI  D    TRI+GL+A+GE +S G HGANRL SNSL E VV G L   +   R     
Sbjct: 359 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAG 418

Query: 371 GANDAPYNFDELGDVDSIREI-------------------MWNHAGIVRDKSSLLEGLKK 411
             N+A       G    ++++                   M    GI R    + + + K
Sbjct: 419 NGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 478

Query: 412 L-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
           L E  E  +R+++                      VA+ +   A+ R+ESRG+H R D
Sbjct: 479 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 536


>gb|AAF21045.1|AF211482_1 (AF211482) SdhA [Dictyostelium discoideum]
           Length = 626
           
 Score =  172 bits (432), Expect = 7e-42
 Identities = 159/541 (29%), Positives = 248/541 (45%), Gaps = 109/541 (20%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA+ L EKG   + I       S++  AQ GI   L   + D  R H  D
Sbjct: 44  VVGAGGAGLRAALGLTEKGYKTACITKLFPTRSHTVAAQGGINAALGNADQDDWRWHAYD 103

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKSE----- 119
           T++   ++ D++ +  +  ++      L  +GV F+   ++ G  + R F  +S+     
Sbjct: 104 TVKGSDFLGDQDAIHYMCKEAVPTVLELEQYGVPFS--RMDDGRIYQRAFGGQSKNFGKG 161

Query: 120 ------------TGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NGE 162
                       TG  ++  L   A +    F +  FV ++ ++NG   GV      +G 
Sbjct: 162 GQATRCCAAADRTGHALLHTLYGQAVKHNTKFFIEYFVTDLIMENGDCRGVVAINLEDGT 221

Query: 163 LLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
           + +F   A V+ATGG+   Y          G     +   G+P +D+EFVQFHPTG  G 
Sbjct: 222 IHRFRSHATVIATGGYGRAYFSATSAHTCTGDGNAMVIRAGLPCQDLEFVQFHPTGIYGS 281

Query: 221 RTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGVF---- 269
              LITE  RG G  L+   GERF       V +L +RDVV+R+  +++ EG+GV     
Sbjct: 282 GC-LITEGARGEGGYLLNSSGERFMPRYAPSVADLASRDVVSRSETMEIREGRGVGPEKD 340

Query: 270 -----LDARGIEDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTR 323
                L     E   +R P +  + +   G+D  K+ IPV P  HY MGGI  +  Y+ +
Sbjct: 341 HCLLNLTHLSPEIIDERLPGIRETAMIFAGVDVTKEPIPVIPTVHYNMGGIPTN--YKGQ 398

Query: 324 I-----------RGLYAIGEAASNGFHGANRLASNSLLECVVSGL----EVARTILREEP 368
           +           +GLYA GE+A    HGANRL +NSLL+ VV G     E+  T+ ++ P
Sbjct: 399 VITQVDGKDKLVKGLYAAGESACVSVHGANRLGANSLLDIVVFGRAVANEIENTLAKDTP 458

Query: 369 KRGANDAPYNFDE--LGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLK 410
            +     P N  E  + ++D+IR                +IM  +A + RD   L EG++
Sbjct: 459 HK---PLPPNAGEESIANIDAIRFSNGTRSTAEIRLEMQKIMQRNAAVFRDGQVLKEGVE 515

Query: 411 KLEG----------------------VEADQRLKVVAKAVLTL--ALEREESRGSHYRRD 446
            ++                       +E+ +   ++ +AVLT+  A  R+ESRG+H R D
Sbjct: 516 LIDKCARSLINDLKTTDRTMIWNTDLIESLELQNLMTQAVLTMHSAEARKESRGAHARED 575

Query: 447 F 447
           +
Sbjct: 576 Y 576


>gi|6322701 flavoprotein subunit of succinate dehydrogenase; Sdh1p
           [Saccharomyces cerevisiae]
           >gi|231993|sp|Q00711|DHSA_YEAST SUCCINATE DEHYDROGENASE
           [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
           PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF COMPLEX II)
           >gi|479587|pir||S34793 succinate dehydrogenase
           (ubiquinone) (EC 1.3.5.1) flavoprotein precursor,
           mitochondrial - yeast (Saccharomyces cerevisiae)
           >gi|172551|gb|AAA35022.1| (M86909) succinate
           dehydrogenase flavoprotein subunit [Saccharomyces
           cerevisiae] >gi|172554|gb|AAA35024.1| (M94874) succinate
           dehydrogenase flavoprotein [Saccharomyces cerevisiae]
           >gi|172557|gb|AAA35026.1| (M86746) succinate
           dehydrogenase [Saccharomyces cerevisiae]
           >gi|407500|emb|CAA81506.1| (Z26877) unknown
           [Saccharomyces cerevisiae] >gi|486254|emb|CAA81989.1|
           (Z28148) ORF YKL148c [Saccharomyces cerevisiae]
           >gi|1582556|prf||2118404T ORF [Saccharomyces cerevisiae]
           Length = 640
           
 Score =  171 bits (430), Expect = 1e-41
 Identities = 156/538 (28%), Positives = 238/538 (43%), Gaps = 100/538 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           ++G G AGL AA  L E G   + I       S++  AQ GI   L  +  D+ + H+ D
Sbjct: 57  VIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNWKWHMYD 116

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF---------- 114
           T++   ++ D++ +  +  ++ ++   L  +GV F  +  E G  + R F          
Sbjct: 117 TVKGSDWLGDQDSIHYMTREAPKSIIELEHYGVPF--SRTENGKIYQRAFGGQTKEYGKG 174

Query: 115 -------TIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGE 162
                   +   TG  ++  L   A     + F+  F  ++   NG++ GV      +G 
Sbjct: 175 AQAYRTCAVADRTGHALLHTLYGQALRHDTHFFIEYFALDLLTHNGEVVGVIAYNQEDGT 234

Query: 163 LLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
           + +F A   ++ATGG+   Y          G     ++  G PL+D+EFVQFHP+G  G 
Sbjct: 235 IHRFRAHKTIIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLQDLEFVQFHPSGIYGS 294

Query: 221 RTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKGV----- 268
              LITE  RG G  LV  +GERF+        +L  RDVV+RAI +++ EG+GV     
Sbjct: 295 GC-LITEGARGEGGFLVNSEGERFMERYAPTAKDLACRDVVSRAITMEIREGRGVGKKKD 353

Query: 269 --FLDARGI--EDFKDRFPYVYSVLK-KEGIDPGKDLIPVTPVAHYTMGGI-------SV 316
             +L    +  E  K+R P +        G+D  K+ IP+ P  HY MGGI       ++
Sbjct: 354 HMYLQLSHLPPEVLKERLPGISETAAIFAGVDVTKEPIPIIPTVHYNMGGIPTKWNGEAL 413

Query: 317 DIFYRTR----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTIL-------- 364
            I   T     I GL A GEAA    HGANRL +NSLL+ VV G  VA T+         
Sbjct: 414 TIDEETGEDKVIPGLMACGEAACVSVHGANRLGANSLLDLVVFGRAVAHTVADTLQPGLP 473

Query: 365 -REEPKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLE 413
            +  P     ++  N D+L + +          ++++ M     + R +SSL EG++ + 
Sbjct: 474 HKPLPSDLGKESIANLDKLRNANGSRSTAEIRMNMKQTMQKDVSVFRTQSSLDEGVRNIT 533

Query: 414 GVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
            VE                         Q L   A      A  R+ESRG+H R D+P
Sbjct: 534 AVEKTFDDVKTTDRSMIWNSDLVETLELQNLLTCASQTAVSAANRKESRGAHAREDYP 591


>gb|AAA23437.1| (J01611) fumarate reductase flavoprotein subunit [Escherichia coli]
           Length = 602
           
 Score =  171 bits (429), Expect = 1e-41
 Identities = 163/538 (30%), Positives = 246/538 (45%), Gaps = 103/538 (19%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSI-----IGPKSKDSNSYLAQAGIAFPLVEGDSIR 59
           ++ IVG G AGL AAI+  +   +  I     + P    S++  A+ G A    + DS  
Sbjct: 7   DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR--SHTVAAEGGSAAVAQDHDSFE 64

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPR 112
            H  DT+  G ++ +++VV   +       + L   G  ++            GG    R
Sbjct: 65  YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 124

Query: 113 VFTIKSETGKHVIPILEKHARELGV--NFVRGFVEEIGIKNGKLAGV----FLNGELLKF 166
            +    +TG H++  L + + +      F   FV +I + +G + G+     + G L++ 
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQI 184

Query: 167 --DAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFIGR 220
             +AVV+ATGG   +YR+      N G++ GD   +AL  GVPLRDMEFVQ+HPTG  G 
Sbjct: 185 RANAVVMATGGAGRVYRYNT----NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS 240

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYLKM 262
              L+TE  RG G  LV  +G R++                   EL  RD V++A + + 
Sbjct: 241 GI-LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEW 299

Query: 263 LEGKG--------VFLDARGIEDFK--DRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTM 311
            +G          V+LD R + + K  +R P++  + K   G+DP K+ IPV P AHYTM
Sbjct: 300 RKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTM 359

Query: 312 GGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEPKR 370
           GGI  D    TRI+GL+A+GE +S G HGANRL SNSL E VV G L   +   R     
Sbjct: 360 GGIETDQNCETRIKGLFAVGECSSVGPHGANRLGSNSLAELVVFGRLAGEQATERAATAG 419

Query: 371 GANDAPYNFDELGDVDSIREI-------------------MWNHAGIVRDKSSLLEGLKK 411
             N+A       G    ++++                   M    GI R    + + + K
Sbjct: 420 NGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDK 479

Query: 412 L-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
           L E  E  +R+++                      VA+ +   A+ R+ESRG+H R D
Sbjct: 480 LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537


>pir||F82050 fumarate reductase, flavoprotein chain VC2656 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9657248|gb|AAF95797.1| (AE004331) fumarate
           reductase, flavoprotein subunit [Vibrio cholerae]
           Length = 602
           
 Score =  171 bits (429), Expect = 1e-41
 Identities = 160/540 (29%), Positives = 247/540 (45%), Gaps = 99/540 (18%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKG--VDVSIIGPK-SKDSNSYLAQAGIAFPLVEGDS 57
           ++  ++ ++G G AGL  AI+  E    ++V++I       S++  A+ G A  + + DS
Sbjct: 3   ILTTDIAVIGAGGAGLRTAIAAAEANPHLEVALISKVYPMRSHTVAAEGGSAAVIKDEDS 62

Query: 58  IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSH 110
           +  H  DT+  G ++ +++VV   ++ +T     +   G  ++  E         GG   
Sbjct: 63  LDNHFNDTVGGGDWLCEQDVVEYFVANATREMIQMEQWGCPWSRKENGEVNVRRFGGMKV 122

Query: 111 PRVFTIKSETGKHVIPILEKHA------RELGVNFVRGFVEEIGIKNGKLAGVFLNGEL- 163
            R +    +TG H++  L + +      + L   FV   + + G   G +A     GEL 
Sbjct: 123 ERTWFAADKTGFHMLHTLFQTSMKYPQIKRLDEYFVVDLLVDEGEIQGLIAIHMSEGELV 182

Query: 164 -LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGD---LALK-GVPLRDMEFVQFHPTGFI 218
            +K  +VV+ATGG   +Y        N G++ GD   +A + GVPLRDMEFVQ+HPTG  
Sbjct: 183 TIKAKSVVLATGGAGRVYHCNT----NGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLP 238

Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFVN------------------ELETRDVVARAIYL 260
           G    L+TE  RG G  +V   G R++                   EL  RD V++A + 
Sbjct: 239 GTGI-LMTEGCRGEGGIIVNKHGYRYLQDYGMGPETPVGQPKNKYMELGPRDKVSQAFWH 297

Query: 261 KMLEGKG--------VFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHY 309
           +  +G          V LD R  G E  ++R P++  + K    +DP K+ IP+ P  HY
Sbjct: 298 EQQKGNTIKHPLGDVVHLDLRHLGEEYLQERLPFICELAKAYVNVDPAKEPIPIRPTVHY 357

Query: 310 TMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSG-LEVARTILREEP 368
           TMGGI  +    TRI+GL+A+GE AS G HGANRL SNSL E VV G +   + + R   
Sbjct: 358 TMGGIETNGECETRIKGLFAVGECASVGLHGANRLGSNSLAEFVVFGRVAGEKAVERAAE 417

Query: 369 KRGANDAPYNFDELGDVDSIREIMWNH-------------------AGIVRDKSSLLEGL 409
            +G N+           D I  +M                       GI R +  + E +
Sbjct: 418 FKGWNEKAIAAQVKAVEDRIAALMQQEGDENWATIRTEMGHTMEAGCGIYRQEDLMQETI 477

Query: 410 KKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
            KL E  E  +R+ +                      VA+A++  A+ R+ESRG+H R D
Sbjct: 478 DKLAELKERYKRISIKDKGKVFNTDLLYAIEVGYGLDVAEAMVHSAILRKESRGAHQRLD 537


>pir||T44962 succinate dehydrogenase chain A homolog [imported] - Natronomonas
           pharaonis >gi|1524302|emb|CAA68982.1| (Y07709) SDH
           subunit A-homologue; flavoprotein [Natronomonas
           pharaonis]
           Length = 611
           
 Score =  171 bits (428), Expect = 2e-41
 Identities = 130/391 (33%), Positives = 194/391 (49%), Gaps = 40/391 (10%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEGDSIRIHVL 63
           +V +VG G AGL AAI+  E+G DV+++       S++  A+ GI   + +GD   +H  
Sbjct: 7   DVIVVGAGGAGLRAAIAAHEEGADVAMVTKLHPVRSHTGAAEGGINAAIRDGDDWELHAY 66

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHPRVFTI 116
           DT++   Y+ D   +  +   + E    L   G+ F+  +         GG S PR    
Sbjct: 67  DTMKGSDYLGDAPAIETLAQDAPEEVIQLEHWGMPFSREDDGRVSQRPFGGLSFPRTTYA 126

Query: 117 KSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKN----------GKLAGVFLNGELLK 165
            +ETG H++  + +   + G+     F V E+ + +          G +A    +G+++ 
Sbjct: 127 GAETGHHLLHTMYEQVVKRGIKVYDEFYVSELAVTDHDDPEDRECHGCVAYDIKSGDIVG 186

Query: 166 FDA---VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRT 222
           F A   V++ATGG   ++  T     N G         GVP+ DMEFVQFHPT  +    
Sbjct: 187 FRATGGVILATGGDGQVFDHTTNAVANTGDGPAMAYRAGVPVEDMEFVQFHPTT-LPSTG 245

Query: 223 YLITEAVRGAGAKLVTGDGERFV---------NELETRDVVARAIYLKMLEGKG-----V 268
            LI+E VRG G  L   +GERF+          EL +RDVV+RA   ++ EG+G     V
Sbjct: 246 VLISEGVRGEGGILYNSEGERFMFEYGYANNDGELASRDVVSRAELTEVNEGRGINDEYV 305

Query: 269 FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIR 325
           FLD R  G E   DR   +  + +  EG++P ++ +PV P  HY MGG+  +    T I 
Sbjct: 306 FLDMRHLGDERINDRLENIIHLAEDFEGVNPVEEPMPVKPGQHYHMGGVETNEHGETCID 365

Query: 326 GLYAIGEAASNGFHGANRLASNSLLECVVSG 356
           GLYA GE A    HG+NRL  N+L E +V G
Sbjct: 366 GLYAAGECACASVHGSNRLGGNALPELIVFG 396


>sp|P51054|DHSA_COXBU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
           >gi|2117543|pir||I40849 succinate dehydrogenase (EC
           1.3.99.1) - Coxiella burnetii >gi|495755|gb|AAA74133.1|
           (L33409) succinate dehydrogenase [Coxiella burnetii]
           Length = 587
           
 Score =  170 bits (427), Expect = 3e-41
 Identities = 163/540 (30%), Positives = 242/540 (44%), Gaps = 106/540 (19%)

Query: 8   IVGGGLAGLVAAISLVE----KGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIH 61
           IVG G AGL AA+ + +    K   VS + P    S++  AQ GIA  L  V  D    H
Sbjct: 13  IVGAGGAGLRAALEMAQSRQYKVAVVSKVFPTR--SHTVSAQGGIAAALGNVVPDKPIWH 70

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTG-------NELEGGHSHP--- 111
           + DT++   Y+ D++ +  +  ++  +   L  +G+ F+            GGH+     
Sbjct: 71  MFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFGK 130

Query: 112 ----RVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFL--- 159
               R       TG  ++  L +   E G +F   + E  GI       G +AG+     
Sbjct: 131 EMARRTCACADRTGHAMLHTLYQKNVEAGTHF---YYEWYGIDLVRGAQGGIAGMIAMNM 187

Query: 160 -NGELLKFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
              EL+ F   A + ATGG   +Y  T+    N G  IG +   G+P++DMEF QFHPTG
Sbjct: 188 ETSELVFFKSRATIFATGGAGRIYETTSNAYTNTGDGIGMVLRAGLPVQDMEFWQFHPTG 247

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGV- 268
             G    LITE  RG G  L+  DGERF       + +L+ RDVVAR+I  +++ G GV 
Sbjct: 248 IYGVGC-LITEGARGEGGYLINKDGERFMERYSPHLKDLDCRDVVARSILQEVMAGGGVG 306

Query: 269 --------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF 319
                    LD  G +  ++R P +  + +K   +D  K+ IP+ P  HY MGGI  +I 
Sbjct: 307 PKKDHVLLKLDHLGEKVLRERLPGIIELSEKFANVDITKEPIPILPTCHYMMGGIPTNIH 366

Query: 320 YRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILR 365
            +            I GL+A GE A    HGANRL +NSLL+ VV     GL +   +  
Sbjct: 367 GQALTVDENGKDQIIEGLFAAGECACVSVHGANRLGTNSLLDLVVFGRAIGLHLEEALKT 426

Query: 366 EEPKRGAN--------------DAPYNFDELGDV-DSIREIMWNHAGIVRDKSSLLEGLK 410
           E   R  N              + P N +    +   +R+ M    G+ R++  + +GL+
Sbjct: 427 ELKHRSENPDDIDAAIARLKRWEKPNNVENPALLRQEMRKAMSEDFGVFREEQKMKQGLE 486

Query: 411 KLEGV-EADQRLKV----------------------VAKAVLTLALEREESRGSHYRRDF 447
           +L+ + E  QR K+                      V+ A    A +R ESRG+H R D+
Sbjct: 487 RLQKLNERLQRAKLTDTSRTFNNARIEALELDNLMEVSYATAVSAQQRTESRGAHSRYDY 546


>sp|Q94523|DHSA_DROME SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
           MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
           COMPLEX II) >gi|1813955|emb|CAA70285.1| (Y09064)
           succinate dehydrogenase flavoprotein subunit [Drosophila
           melanogaster]
           Length = 509
           
 Score =  168 bits (422), Expect = 1e-40
 Identities = 145/466 (31%), Positives = 229/466 (49%), Gaps = 62/466 (13%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA  LV +G   ++I       S++  AQ GI   L  +E D  + H+ D
Sbjct: 45  VVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYD 104

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
           T++   ++ D++ +  +  ++ +A   L ++G+ F+             G  L+   GG 
Sbjct: 105 TVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQ 164

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGEL 163
           +H R   +   TG  ++  L   +     N FV  F  ++  ++G+  GV      +G L
Sbjct: 165 AH-RCCAVADRTGHSLLHTLYGQSLNYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTL 223

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F A   V+ATGG+   +          G     +A +G+P +D+EFVQFHPTG  G  
Sbjct: 224 HRFRAKNTVLATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAG 283

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------- 267
             LITE  RG G  L+ G+GERF+        +L +RDVV+R++ ++++EG+G       
Sbjct: 284 C-LITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDH 342

Query: 268 VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRI 324
           V+L    +  +   +R P +  + +   G+D  ++ IPV P  HY MGG+  +  YR ++
Sbjct: 343 VYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTN--YRGQV 400

Query: 325 ------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGA 372
                        GLYA GEAAS+  HGANRL +NSLL+ VV G   A+TI  E  K GA
Sbjct: 401 ITIDKDGKDVIVPGLYAAGEAASSSVHGANRLGANSLLDLVVFGRACAKTI-AELNKPGA 459

Query: 373 NDAPYNFDELGDVDSIREIMWNHA-GIVRDKSSLLEGLKKLEGVEA 417
             AP   +  G+          HA G++      L+  K ++ + A
Sbjct: 460 -PAPTLKENAGEASVANLDKLRHANGLITTADLRLKMQKTMQHLAA 504


>emb|CAB89075.1| (AL353872) putative succinate dehydrogenase flavoprotein subunit
           [Streptomyces coelicolor A3(2)]
           Length = 584
           
 Score =  168 bits (421), Expect = 1e-40
 Identities = 162/534 (30%), Positives = 233/534 (43%), Gaps = 96/534 (17%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHVLDT 65
           IVG G AG+ AAI   ++     +       S++  AQ G+A  L  VE D+   H  DT
Sbjct: 10  IVGAGGAGMRAAIESTKRSRTAVLTKLYPTRSHTGAAQGGMAAALANVEEDNWEWHTFDT 69

Query: 66  IRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHP------- 111
           ++ G Y+ D++    +  ++ ++   L   G+ F             GGHS         
Sbjct: 70  VKGGDYLVDQDAAEILAKEAIDSVLDLEKMGLPFNRTPDGTIDQRRFGGHSRNHGEAPVR 129

Query: 112 RVFTIKSETGKHVIPILEKHARELGVNFVRGF-------VEEIGIKN--GKLAGVFLNGE 162
           R       TG  ++  L ++  + GV F   F        E  G+K   G +A     GE
Sbjct: 130 RSCYAADRTGHMILQTLYQNCVKEGVEFFNEFYVLDQLITEVDGVKKSAGVVAYELATGE 189

Query: 163 LLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
           +  F A  V+ A+GG    ++ T+      G     +  +G+PL DMEF QFHPTG I R
Sbjct: 190 IHVFQAKSVIYASGGTGKFFKVTSNAHTLTGDGQAAVYRRGLPLEDMEFFQFHPTG-IWR 248

Query: 221 RTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG------ 267
              L+TE  RG G  L   DGERF+        +L +RDVV+R+IY ++ EG+G      
Sbjct: 249 MGILLTEGARGEGGILRNKDGERFMEKYAPVMKDLASRDVVSRSIYTEIREGRGCGPEGD 308

Query: 268 -VFLDARGI--EDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDIFYR-- 321
            V+LD   +  E    + P +    +   GI+P  D IP+ P AHY MGGI  ++     
Sbjct: 309 HVYLDLTHLPPEQLDAKLPDITEFARTYLGIEPYTDPIPIQPTAHYAMGGIPTNVEGEVL 368

Query: 322 ----TRIRGLYAIGEAASNGFHGANRLASNSLLECVV----------------------- 354
               T + GLYA GE A    HGANRL +NSLL+  V                       
Sbjct: 369 ADNTTVVPGLYAAGEVACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAQKADFVELPE 428

Query: 355 ----------------SGLEVARTILRE-EPKRGANDAPYNFDEL--GDVDSIREIMWNH 395
                           +G E   TI RE +    AN   +  ++     V+ I E+   +
Sbjct: 429 DPETLVVEQIERLRSSTGTERVATIRRELQECMDANVMVFRTEQTIKTAVEKIAELRARY 488

Query: 396 AGI-VRDKSSLLEGLKKLEGVEADQRLKVVAKAVLTLALEREESRGSHYRRDFP 448
             + ++DK         LE VE    L  +A+ +   AL R+ESRG HYR DFP
Sbjct: 489 KNVSIQDKGRRF-NTDLLEAVELGNLLD-LAEVMAVSALARKESRGGHYREDFP 540


>sp|P31038|DHSA_RICPR SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT >gi|538837|pir||JN0895
           succinate dehydrogenase (EC 1.3.99.1) flavoprotein chain
           sdhA - Rickettsia prowazekii >gi|152492|gb|AAA16097.1|
           (M88696) succinate dehydrogenase [Rickettsia prowazekii]
           >gi|409936|gb|AAA18327.1| (U02603) SdhA [Rickettsia
           prowazekii] >gi|3860696|emb|CAA14597.1| (AJ235270)
           SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (sdhA)
           [Rickettsia prowazekii]
           Length = 596
           
 Score =  168 bits (420), Expect = 2e-40
 Identities = 158/538 (29%), Positives = 244/538 (44%), Gaps = 95/538 (17%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
           +V +VG G AGL +A  + ++G++ + I       S++  AQ GI+  L  +  D  R H
Sbjct: 13  DVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDWRWH 72

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN---------------ELEG 106
           + DT++   ++ D++ +  +   + +A   L  +GV F+                 E   
Sbjct: 73  MYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTVDGKIYQRPFGGMTTEYGK 132

Query: 107 GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NG 161
           G +  R       TG  ++  L + + +  V F +  F  ++ +++G+  GV      +G
Sbjct: 133 GKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLMEDGECRGVVAWNLDDG 192

Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
            L  F A  VV+ATGG+   Y          G   G +   G+PL+DMEFVQFHPTG   
Sbjct: 193 SLHCFRAHNVVLATGGYGRAYFSATSAHTCTGDGGGMVIRAGLPLQDMEFVQFHPTGIYS 252

Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV---- 268
               LITE  RG G  LV  +GERF+        +L +RDVV+RA+ +++ EG+GV    
Sbjct: 253 AGC-LITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHK 311

Query: 269 -----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF--- 319
                 L+    E    R P +    K   G+D  KD IPV P  HY MGGI  +     
Sbjct: 312 DHVFLHLNHLSPEILHRRLPGISETAKIFAGVDVTKDPIPVLPTVHYNMGGIPTNYQGQV 371

Query: 320 -------YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEP 368
                  + + + G+ AIGEAA    HGANRL SNSLL+ VV    S L+ A  I    P
Sbjct: 372 IIKDGKNHNSIVNGIMAIGEAACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASP 431

Query: 369 -----KRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKL- 412
                K         FD++   +           ++  M +H  + R +  L EG+  + 
Sbjct: 432 HKPLQKETLEKIINRFDKVRYANGNILVADLRLKMQRTMQSHVSVFRTQKLLDEGVGMIS 491

Query: 413 --------------------EGVEADQRLKVVAKAVLTL--ALEREESRGSHYRRDFP 448
                               + VEA +   ++ +A++T+  A  R+ESRG+H R D+P
Sbjct: 492 EIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVCSAAARKESRGAHAREDYP 549


>gb|AAC17942.1| (AF007569) succinate dehydrogenase flavoprotein subunit
           [Bradyrhizobium japonicum]
           Length = 611
           
 Score =  167 bits (419), Expect = 2e-40
 Identities = 155/537 (28%), Positives = 237/537 (43%), Gaps = 95/537 (17%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
           +V +VG G AGL A +   E G+  + I       S++  AQ GI+  L  +  D  R H
Sbjct: 28  DVVVVGAGGAGLRAVVGCSEAGLRTACITKVFPTRSHTVAAQGGISASLGNMHKDDWRWH 87

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHP---------- 111
           + DT++   ++ D++ +  ++  + +A   L   GV F+  E    +  P          
Sbjct: 88  MYDTVKGSDWLGDQDAIEYMVRNAPDAVYELEHWGVPFSRTEDGKIYQRPFGGMTLDFGK 147

Query: 112 ----RVFTIKSETGKHVIPILE----KHARELGVNF--VRGFVEEIGIKNGKLAGVFLNG 161
               R       TG  ++  +     +HA E  + F  +   +++ G   G +A    +G
Sbjct: 148 GQAQRTCAAADRTGHAMLHTMYGQSLRHAAEFFIEFFAIDLIMDDQGTCRGVIALKLDDG 207

Query: 162 ELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG 219
            L +F A  V++ATGG+   Y          G   G +   G+P++DMEFVQFHPTG  G
Sbjct: 208 TLHRFRAQTVILATGGYGRAYASCTSAHTCTGDGGGMVLRAGLPMQDMEFVQFHPTGIYG 267

Query: 220 RRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV---- 268
               L+TE  RG G  LV  +GERF+        +L +RDVV+RA+ +++ EG+GV    
Sbjct: 268 SGC-LVTEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKK 326

Query: 269 -----FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRT 322
                 LD        +R P +    K    +D  ++ IP+ P  HY MGGI  +     
Sbjct: 327 DHIFLHLDHLDPAVLAERLPGISESAKIFANVDVTREPIPIVPTVHYNMGGIPTNYHGEV 386

Query: 323 R----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR------E 366
                      I GL AIGEAA    HGANRL SNSL++ VV G   A  +        +
Sbjct: 387 LTKKDGDDNAVIPGLMAIGEAACVSVHGANRLGSNSLIDLVVFGRAAALRLAEKLTPNAK 446

Query: 367 EPKRGANDAPYNFDELGDV-------------DSIREIMWNHAGIVRDKSSLLEGLKKLE 413
           +P+  AN A      L                + ++ +M ++  + R    L EG   +E
Sbjct: 447 QPELPANSAELALGRLDHYRYASGGTPTAKLREGMQHVMQSNCAVFRTGEVLSEGQNLIE 506

Query: 414 GVE--------ADQRL-------------KVVAKAVLTL--ALEREESRGSHYRRDF 447
            V         +D+ L              ++A+AV+T+  A  R ESRG+H R DF
Sbjct: 507 KVHSGITDIAVSDRSLVWNSDLVETLEFDNLIAQAVVTMNSAANRTESRGAHAREDF 563


>pir||T50081 probable succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)
           flavoprotein chain precursor [imported] - fission yeast 
           (Schizosaccharomyces pombe) >gi|6448607|emb|CAB61213.1|
           (AL132984) probable succinate dehydrogenase flavoprotein
           subunit precursor(ec 1.3.5.1) [Schizosaccharomyces
           pombe]
           Length = 641
           
 Score =  167 bits (419), Expect = 2e-40
 Identities = 161/538 (29%), Positives = 237/538 (43%), Gaps = 101/538 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL A   L E G + + I       S++  AQ GI   L  +  D  R H  D
Sbjct: 59  VVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYD 118

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
           T++   ++ D++ +  +  ++ +A   L   GV F+             G  LE   GG 
Sbjct: 119 TVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQ 178

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NGEL 163
           ++ R   +   TG  ++  L   + +   NF +  F  ++ ++ G+  GV      +G +
Sbjct: 179 AY-RCAAVADRTGHSILHTLYGQSLKHNTNFFIEYFAMDLIMEGGECRGVIAMNLEDGSI 237

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F A   ++ATGG+   Y          G     ++  G+PL+D+EFVQFHPTG  G  
Sbjct: 238 HRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGLPLQDLEFVQFHPTGIYGAG 297

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVF----- 269
             LITE  RG G  L+   GERF+        +L +RDVV+RA+ +++ EG+GV      
Sbjct: 298 C-LITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVGPEKDH 356

Query: 270 ----LDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGI---------S 315
               L     E  K+R P +        G+D  K+ IPV P  HY MGGI         +
Sbjct: 357 CYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLT 416

Query: 316 VDIFYRTRI-RGLYAIGEAASNGFHGANRLASNSLLECVVSG----LEVARTILREEP-K 369
           +D   + +I  GLYA GEAA    HG NRL +NSLL+ VV G    L +  T+    P K
Sbjct: 417 IDENGKDKIVPGLYAAGEAACVSVHGGNRLGANSLLDIVVFGRACALHIKDTLEPNTPHK 476

Query: 370 RGANDAPYNFDELGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLKKLE 413
             A DA    D L  +D IR                + M     + R + +L EG+K + 
Sbjct: 477 PLAADA--GLDSLKFLDQIRTSQGPKHTSEIRLDMQKTMQRDVSVFRMEETLQEGVKNIA 534

Query: 414 GVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDFP 448
            V+                         + L   A      AL R+ESRG+H R D+P
Sbjct: 535 RVDGTYKDIGIRDRGLIWNTDLVEALELRNLLTCAVQTANAALNRKESRGAHAREDYP 592


>sp|Q59661|DHSA_PARDE SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
           >gi|11252561|pir||T46880 succinate dehydrogenase
           flavoprotein chain [imported] - Paracoccus denitrificans
           >gi|975318|gb|AAA75177.1| (U31902) succinate
           dehydrogenase flavoprotein subunit [Paracoccus
           denitrificans]
           Length = 600
           
 Score =  167 bits (419), Expect = 2e-40
 Identities = 157/540 (29%), Positives = 239/540 (44%), Gaps = 95/540 (17%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +V +VG G AGL A + + E+G+  + +       S++  AQ GIA  L  +  D+ +
Sbjct: 10  EYDVVVVGAGGAGLRATLGMAEQGLRTACVTKVFPTRSHTVAAQGGIAASLSNMGPDNWQ 69

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELEG 106
            H+ DT++   ++ D + +  +  ++ +A   L  +GV F+             G+  E 
Sbjct: 70  WHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTTEF 129

Query: 107 GHSHP--RVFTIKSETGKHVIPILEKHA-RELGVNFVRGFVEEIGIKNGKLAGVFL---- 159
           G   P  R       TG  ++  L   + +E    F+  F  ++ I +G   GV      
Sbjct: 130 GEGPPVQRTCAAADRTGHAILHTLYGQSLKEKAEFFIEYFALDLIITDGACTGVVCWKLD 189

Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
           +G +  F+A  VV+ATGG+   Y          G   G +A  G+PL+DMEFVQFHPTG 
Sbjct: 190 DGTIHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMVARAGLPLQDMEFVQFHPTGI 249

Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-- 268
            G    LITE  RG G  L   +GERF+        +L +RDVV+R I +++ EG+GV  
Sbjct: 250 YGSGC-LITEGARGEGGYLTNSEGERFMERYAPTYKDLASRDVVSRCITIEIREGRGVGP 308

Query: 269 -----FLDARGI--EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
                 L+   +  E   +R P +    K   G+D  ++ IP+ P  HY MGGI  + + 
Sbjct: 309 HKDHMHLNLMHLPPESLAERLPGISESAKIFAGVDVTREPIPILPTVHYNMGGIPTNYWG 368

Query: 321 RTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSG----LEVARTILRE 366
                          GL A+GEA     HGANRL SNSL++ VV G    +   + I RE
Sbjct: 369 EVLNPTQDNPDQVFPGLMAVGEAGCASVHGANRLGSNSLIDLVVFGRAAAIRAGQVIDRE 428

Query: 367 EP-----KRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKK 411
                  K   + A   FD + + D           ++  M   A + R   +L EG+ K
Sbjct: 429 AQIPTTNKEQVDKALDRFDRIRNADGSVSTADLRLEMQRTMQADAAVFRTDKTLAEGVDK 488

Query: 412 LEGVEAD-QRLKVV----------------------AKAVLTLALEREESRGSHYRRDFP 448
           +  +      LKV                       A A +  A  R+ESRG+H   D+P
Sbjct: 489 MRVIAGKLSDLKVTDRSLIWNSDLMETLELTNLMPNALATIVAAEARKESRGAHAHEDYP 548


>dbj|BAA31215.1| (AB015757) fumarate reductase flavoprotein subunit [Rhodoferax
           fermentans]
           Length = 601
           
 Score =  166 bits (417), Expect = 4e-40
 Identities = 156/541 (28%), Positives = 241/541 (43%), Gaps = 103/541 (19%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIH 61
           +V IVG G +G+ A++ L   G++V+++       S++  AQ GI   L  +  D+   H
Sbjct: 13  DVVIVGAGGSGMSASLRLSNAGLNVAVLTKVFPTRSHTVAAQGGIGASLGNMAEDNWHYH 72

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSH---- 110
             DTI+   ++ D++ +  +  + T+    L   G+ F  N          GGH+     
Sbjct: 73  FYDTIKGSDWLGDQDAIEFMCRERTQVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGE 132

Query: 111 ---PRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFL--- 159
               R       TG  ++  L +   +   NF   FVE + +       G + GV     
Sbjct: 133 KPVQRACAAADRTGHAMLHTLYQQNVKARTNF---FVEWMALDLIRDAEGDVVGVTALEM 189

Query: 160 -NGEL--LKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
             GE+  L+  +V++ATGG   ++  +     N G  +G  A  G+PL+DMEF QFHPTG
Sbjct: 190 ETGEIHVLRAKSVLLATGGAGRIFAASTNAFINTGDGLGIAARAGIPLQDMEFWQFHPTG 249

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKG-- 267
             G    L+TE  RG GA L    GERF       + +L  RD V+R +  ++ EG+G  
Sbjct: 250 VAGAGV-LLTEGCRGEGAILRNSAGERFMERYAPTLKDLAPRDFVSRCMDQEIKEGRGCG 308

Query: 268 -----VFLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIF 319
                + LD    G E    R P V+ +      +D  K+ IPV P  HY MGGI  +I+
Sbjct: 309 PNKNYINLDMTHLGAETIAKRLPSVFEIGHNFANVDITKESIPVVPTIHYQMGGIPTNIY 368

Query: 320 ----------YRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTIL----- 364
                      +  ++GLYA+GE A    HGANRL +NSLL+ VV G    + I+     
Sbjct: 369 GQVVTPDGSGSQKVVKGLYAVGECACVSVHGANRLGTNSLLDIVVFGRAAGKHIVQFNNE 428

Query: 365 ----REEPKRGANDAPYNFDELGDV----------DSIREIMWNHAGIVRDKSSLLEGLK 410
               +  P+ GA+ +    + L +           D IR  M  HA + R ++S+ EG+ 
Sbjct: 429 SDTHKPVPENGADISLDRLNRLDNSTSGEYAQVVRDDIRNTMQTHASVFRTQASMDEGVI 488

Query: 411 K------------------------LEGVEADQRLKVVAKAVLTLALEREESRGSHYRRD 446
           K                        +E +E D  ++  A+A +  A  R E RG+H   D
Sbjct: 489 KIAAMRERVKNITLADKSKIFNTARIEALEVDNMIE-AAQATMVSAAARRECRGAHTVLD 547

Query: 447 F 447
           +
Sbjct: 548 Y 548


>pir||G82118 succinate dehydrogenase, flavoprotein chain VC2089 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9656638|gb|AAF95235.1| (AE004283) succinate
           dehydrogenase, flavoprotein subunit [Vibrio cholerae]
           Length = 588
           
 Score =  165 bits (413), Expect = 1e-39
 Identities = 150/537 (27%), Positives = 237/537 (43%), Gaps = 98/537 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPLVEG--DSIRIHVLD 64
           ++G G AG+ AA+ + E+G+  +++       S++  AQ GI   L     D  + H+ D
Sbjct: 12  VIGAGGAGMRAALQISEQGLTCALLSKVFPTRSHTVSAQGGITVALGNSHKDDWQWHMYD 71

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE-GGHSH 110
           T++   YI D+  +  +     E+   L   G+ F+             G   E GG   
Sbjct: 72  TVKGSDYIGDQNAIEYMCKNGPESVIELERMGLPFSRFENGTIYQRPFGGQSKEFGGEQA 131

Query: 111 PRVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEEIGIKN------GKLAGVFLNGEL 163
            R       TG  ++  L +++ +     F   +  ++ +KN      G  A     GE+
Sbjct: 132 ARTAAAADRTGHALLHTLYQQNVKHKTTIFSEWYALDL-VKNQDGAVLGCTAICMETGEI 190

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
             F A   V+ATGG   +Y  T     N G  +G     GVP++DME  QFHPTG  G  
Sbjct: 191 CYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMALRAGVPMQDMEMWQFHPTGIAGAG 250

Query: 222 TYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG------- 267
             L+TE  RG G  L+  DGERF+        +L  RDVVAR++ +++ EG+G       
Sbjct: 251 V-LVTEGCRGEGGYLLNKDGERFMERYAPNAKDLAGRDVVARSMMIEIREGRGCDGPWGP 309

Query: 268 ---VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYR-- 321
              + LD  G +  + R P +  + +    +DP K+ IPV P  HY MGG+   +  +  
Sbjct: 310 HIKLKLDHLGRDVLESRLPGICELSRTFAHVDPVKEPIPVIPTCHYMMGGVPTQVSGQAI 369

Query: 322 --------TRIRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTILREEPK 369
                     ++GL+A GE AS   HGANRL  NSLL+ VV    +GL +  T+  +   
Sbjct: 370 KQDSHGKDVEVQGLFACGEIASVSVHGANRLGGNSLLDLVVFGRATGLHLGETLRAQAEA 429

Query: 370 RGANDAPYNF---------DELGDVD------SIREIMWNHAGIVRDKSSLLEGLKKLEG 414
           R A  +             +  G  D       ++  M N+  + R+  ++ EGL++L+ 
Sbjct: 430 RPATASDIEASLARTMRWENSKGGEDPVVIRKDLQRCMQNNFSVFREGKAMAEGLEELKV 489

Query: 415 VE--------ADQRLKVVAKAVLTLALE---------------REESRGSHYRRDFP 448
           +         AD+  +   + +  L L+               R ESRG+H R D+P
Sbjct: 490 IRERLKNAHLADKSTEFNTQRIECLELDNLMETAFSTAVAANYRTESRGAHARFDYP 546


>gb|AAC72373.1| (AF095938) succinate dehydrogenase Fp subunit [Mus musculus]
           Length = 532
           
 Score =  164 bits (412), Expect = 1e-39
 Identities = 154/536 (28%), Positives = 241/536 (44%), Gaps = 100/536 (18%)

Query: 16  LVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLDTIRAGKYI 72
           L AA  L E G + + +       S++  AQ GI   L  +E D+ R H  DT++   ++
Sbjct: 1   LRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWL 60

Query: 73  NDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL----------------EGGHSHPRVFTI 116
            D++ +  +  ++  +   L ++G+ F+  E                 +GG +H R   +
Sbjct: 61  GDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAH-RCCCV 119

Query: 117 KSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL----NGELLKFDA--V 169
              TG  ++  L   +     + FV  F  ++ ++NG+  GV      +G + +  A   
Sbjct: 120 ADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRIRAKNT 179

Query: 170 VVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYLITEAV 229
           V+ATGG+   Y        + G     +   G+P +D+EFVQFHPTG  G    LITE  
Sbjct: 180 VIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC-LITEGC 238

Query: 230 RGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-------VFLDARGI 275
           RG G  L+   GERF+        +L +RDVV+R++ L++ EG+G       V+L    +
Sbjct: 239 RGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHL 298

Query: 276 --EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIR------- 325
             E    R P +  + +   G+D  K+ IPV P  HY MGGI  +  Y+ ++        
Sbjct: 299 PPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN--YKGQVLKHVNGQD 356

Query: 326 ----GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR------EEPKRGAN-- 373
               GLYA GEAA    HGANRL +NSLL+ VV G   A +I        + P   AN  
Sbjct: 357 QIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGDKVPSIKANAG 416

Query: 374 -DAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEGVEAD---- 418
            ++  N D+L   D          ++++ M NHA + R  S L EG +K+  +  D    
Sbjct: 417 EESVMNLDKLRFADGSIRTSELRLNMQKSMQNHAAVFRVGSVLQEGCEKISQLYGDLKHL 476

Query: 419 -------------------QRLKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFE 455
                              Q L + A   +  A  R+ESRG+H R D+     E++
Sbjct: 477 KTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRVDEYD 532


>pir||C81388 succinate dehydrogenase (EC 1.3.99.1) flavoprotein Cj0437
           [imported] - Campylobacter jejuni (strain NCTC 11168)
           >gi|6967911|emb|CAB74273.1| (AL139075) succinate
           dehydrogenase flavoprotein subunit [Campylobacter
           jejuni]
           Length = 611
           
 Score =  163 bits (409), Expect = 3e-39
 Identities = 160/527 (30%), Positives = 237/527 (44%), Gaps = 84/527 (15%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSII-GPKSKDSNSY--LAQAGI--AFPLVEGDSIR 59
           +V ++G G AGL AA ++ ++   +S++   K   S +   +A+ GI        GDS +
Sbjct: 46  DVLVIGSGGAGLCAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGDSYK 105

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNE-------LEGGHSHPR 112
           +H  DTI+ G Y+ D++        + +A   +   G  F+ NE       L GG S  R
Sbjct: 106 LHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGGASKKR 165

Query: 113 VFTIKSETGKHVIPILEKHARELGVNFVRGF-VEEIGIKNGKLAGVFL----NGELLKF- 166
                 +TG  ++      A   GV F+    + +IG+ +GK  GV L    +G +    
Sbjct: 166 CNYSADKTGHILMHSCLDDAISSGVKFLMNHELLDIGVVDGKCEGVVLRDIQSGGIYPVL 225

Query: 167 -DAVVVATGGFSGL-YRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRRTYL 224
             A+V+ATGG++ + Y  T+      G  +      G+   D E +QFHPTG     T L
Sbjct: 226 CKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPTGVANGGT-L 284

Query: 225 ITEAVRGAGAKLVTGDGERFVN------ELETRDVVARAIYLKMLEGKG--------VFL 270
           ITEA RG G  L+   GERF+       EL  RDVVARAI  ++ EG+G        V  
Sbjct: 285 ITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGYGEGLGAYVLC 344

Query: 271 DAR--GIEDFKDRFPYV-YSVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF--YRTRIR 325
           D R  G E      P + ++ +  E ID     +P+ P AHY+MGGI V  F    T+I 
Sbjct: 345 DVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIEVAKFEDMGTKIA 404

Query: 326 GLYAIGEAASNGFHGANRLASNSLLECVVSG--LEVARTILREEPKRG--------ANDA 375
           G+Y  GEA+    HGANRL  NSL + VV+G    +  T   ++   G        A   
Sbjct: 405 GIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDASFGKGAKTHELAQKW 464

Query: 376 PYNFDEL----GDVDSIREIM-------WNHAGIVRDKSSLLEGLKKLEGVEADQ----- 419
              F E+    G+   + E+        W++ GI R +  L    KKLE ++A       
Sbjct: 465 QVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLLAKKLEDIQARYEKIRI 524

Query: 420 ------------------RLKVVAKAVLTLALEREESRGSHYRRDFP 448
                              L ++++     A  R ESRG+H R D+P
Sbjct: 525 PNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHTREDYP 571


>pir||E82728 succinate dehydrogenase, flavoprotein subunit XF1072 [imported] -
           Xylella fastidiosa (strain 9a5c)
           >gi|9106019|gb|AAF83882.1|AE003943_13 (AE003943)
           succinate dehydrogenase, flavoprotein subunit [Xylella
           fastidiosa]
           Length = 596
           
 Score =  163 bits (409), Expect = 3e-39
 Identities = 160/537 (29%), Positives = 235/537 (42%), Gaps = 98/537 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVD-VSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL A   L +KG+  V +       S++  AQ GI+  L  +  D  R H  D
Sbjct: 15  VVGAGGAGLRATFGLAQKGLQTVCLTKVFPTRSHTVAAQGGISAALGNMGEDDWRYHFYD 74

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHP------------- 111
           TI+   ++ D++ +  +  ++  A   L  +GV F+       +  P             
Sbjct: 75  TIKGSDWLGDQDAIEYMCREAIPAVIELEHYGVPFSRTAQGKIYQRPFGGMTTRYGEGPR 134

Query: 112 --RVFTIKSETGKHVIPILEKHARELGVNFVRGFV------EEIGIKNGKLAGVFLNGEL 163
             R       TG  ++  L + A      F+  +       +  G+  G LA     G L
Sbjct: 135 AERTCAAADRTGHAMLHTLYQQALAHDARFMIEYFALDLIFDNEGVCCGVLALDMAEGSL 194

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
             F A  VV+ATGG+   Y          G   G +   G+P++DMEFVQFHPTG  G  
Sbjct: 195 HLFRAHGVVLATGGYGRTYFSATSAHTCTGDGGGLVMRAGLPMQDMEFVQFHPTGIYGAG 254

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV------ 268
             LITE VRG G  L   +GERF+        +L +RDVV+R++ +++ EG+GV      
Sbjct: 255 C-LITEGVRGEGGILRNSNGERFMERYAPHYKDLASRDVVSRSMIIEIREGRGVGEHKDH 313

Query: 269 -FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRI 324
             LD    G    +++ P +    +   G+D  K  IPV P  HY MGGI  + ++   +
Sbjct: 314 ILLDLTHLGPSMIQEKLPGIAESARIFAGVDVTKQPIPVLPTVHYNMGGIPTN-YHGEVV 372

Query: 325 R-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEV----ARTILREEPK 369
           R           GLYA+GEAA    HGANRL SNSLL+ VV G  V    A TI   +P 
Sbjct: 373 RKIGNDPDAVVPGLYAVGEAACVSVHGANRLGSNSLLDLVVFGRAVANRCAETIKPNQPH 432

Query: 370 R-----GANDAPYNFDELGDVDS----------IREIMWNHAGIVRDKSSLLEGLKKL-- 412
           +       + A    D+L   D           ++  M + A + R   +L EG +K+  
Sbjct: 433 KVLPSDSCDKALGLLDKLRHADGSTPTAVIRDRMQRTMQSDASVFRTSKTLQEGCEKMNE 492

Query: 413 -----EGVEADQR----------------LKVVAKAVLTLALEREESRGSHYRRDFP 448
                + V+   R                L + A A +  A +R+ESRG+H   D+P
Sbjct: 493 IFALFDDVKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHAHEDYP 549


>sp|Q10760|FRDA_MYCTU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|7431670|pir||E70762
           probable frdA protein - Mycobacterium tuberculosis
           (strain H37RV) >gi|1403490|emb|CAA98311.1| (Z74020) frdA
           [Mycobacterium tuberculosis]
           Length = 583
           
 Score =  163 bits (408), Expect = 4e-39
 Identities = 152/538 (28%), Positives = 244/538 (45%), Gaps = 102/538 (18%)

Query: 8   IVGGGLAGLVAAISLVEKG--VDVSIIGPK-SKDSNSYLAQAGIAFPLVEGDSIRIHVLD 64
           ++GGG AGL AAI++ E    +DV+I+       S++  A+ G A    + DS+  H  D
Sbjct: 9   VIGGGGAGLRAAIAIAETNPHLDVAIVSKVYPMRSHTVSAEGGAAAVTGDDDSLDEHAHD 68

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRVFTIK 117
           T+  G ++ D++ V   ++++ +    L   G  ++            GG    R +   
Sbjct: 69  TVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGGMKKLRTWFAA 128

Query: 118 SETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFL------NGELLKFDAV 169
            +TG H++  L +        + +   F   + + +G++ G+          E +  DAV
Sbjct: 129 DKTGFHLLHTLFQRLLTYSDVMRYDEWFATTLLVDDGRVCGLVAIELATGRIETILADAV 188

Query: 170 VVATGGFSGLYRFT--AGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG--FIGRRTYLI 225
           ++ TGG   ++ FT  A +K   G+ +   A  G PL+DMEFVQ+HPTG  F G    LI
Sbjct: 189 ILCTGGCGRVFPFTTNANIKTGDGMALAFRA--GAPLKDMEFVQYHPTGLPFTG---ILI 243

Query: 226 TEAVRGAGAKLVTGDGERFVN----------------ELETRDVVARAIYLKMLEGKGV- 268
           TEA R  G  L+  DG R++                 EL  RD +++A   +  +G+ V 
Sbjct: 244 TEAARAEGGWLLNKDGYRYLQDYDLGKPTPEPRLRSMELGPRDRLSQAFVHEHNKGRTVD 303

Query: 269 -------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
                  +LD R  G +    + P+V  + +  + IDP  +L+PV PV HY MGG+  DI
Sbjct: 304 TPYGPVVYLDLRHLGADLIDAKLPFVRELCRDYQHIDPVVELVPVRPVVHYMMGGVHTDI 363

Query: 319 FYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTIL-----REEPKRGAN 373
              T + GLYA GE A    +GANRL SNSL E +V G    R         ++  RG +
Sbjct: 364 NGATTLPGLYAAGETACVSINGANRLGSNSLPELLVFGARAGRAAADYAARHQKSDRGPS 423

Query: 374 DA-------------------PYNFDELGDVDS-IREIMWNHAGIVRDKSSLLEGLKKLE 413
            A                       + + D+ + ++  + + AGI RD  +L + ++++ 
Sbjct: 424 SAVRAQARTEALRLERELSRHGQGGERIADIRADMQATLESAAGIYRDGPTLTKAVEEIR 483

Query: 414 ---------GVEADQR--------------LKVVAKAVLTLALEREESRGSHYRRDFP 448
                    G++   R              +  VA A++   L REESRG+H R DFP
Sbjct: 484 VLQERFATAGIDDHSRTFNTELTALLELSGMLDVALAIVESGLRREESRGAHQRTDFP 541


>pir||A42792 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
           chain precursor, mitochondrial - bovine
           Length = 665
           
 Score =  163 bits (408), Expect = 4e-39
 Identities = 154/550 (28%), Positives = 245/550 (44%), Gaps = 102/550 (18%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  +VG G AGL AA  L E G + + +       S++  AQ GI   L  +E D+ R
Sbjct: 62  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 121

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
            H  DT++   ++ D++ +  +  ++  +   L ++G+ F+  E                
Sbjct: 122 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 181

Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFL--- 159
            +GG +H R   +   TG  ++  L   +     + FV  F  ++ +++G+  GV     
Sbjct: 182 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMESGECRGVIALCI 240

Query: 160 -NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
            +G + +  A   V+ATGG+   Y        + G     +   G+P +D+EFVQFHPTG
Sbjct: 241 EDGSIHRIRARNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 300

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG-- 267
             G    LITE  RG G  L+   GERF+        +L +RDVV+R++ L++ EG+G  
Sbjct: 301 IYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCG 359

Query: 268 -----VFLDARGIE--DFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISVDIF 319
                V+L    +       R P +  + +   G+D  K+ IPV P  HY MGGI  +  
Sbjct: 360 PEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTN-- 417

Query: 320 YRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE-- 366
           Y+ ++            GLYA GEAA    HGANRL +NSLL+ VV G   A +I     
Sbjct: 418 YKGQVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR 477

Query: 367 --------EPKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEG 408
                   +P  G  ++  N D+L   +          ++++ M +HA + R  S L EG
Sbjct: 478 PGDKVPSIKPNAG-EESVMNLDKLRFANGSIRTSELRLNMQKSMQSHAAVFRVGSVLQEG 536

Query: 409 LKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRR 445
            +K+  +  D                       Q L + A   +  A  R+ESRG   R 
Sbjct: 537 CEKISSLYGDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGPRRE 596

Query: 446 DFPFMRKEFE 455
           DF     E++
Sbjct: 597 DFKERVDEYD 606


>sp|P10444|DHSA_ECOLI SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
           >gi|7427736|pir||DEECSF succinate dehydrogenase (EC
           1.3.99.1) flavoprotein - Escherichia coli
           >gi|1651319|dbj|BAA35390.1| (D90711) Succinate
           dehydrogenase (EC  1.3.99.1) flavoprotein [Escherichia
           coli] >gi|1786942|gb|AAC73817.1| (AE000175) succinate
           dehydrogenase, flavoprotein subunit [Escherichia coli
           K12]
           Length = 588
           
 Score =  163 bits (408), Expect = 4e-39
 Identities = 154/543 (28%), Positives = 240/543 (43%), Gaps = 100/543 (18%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  ++G G AG+ AA+ + + G   +++       S++  AQ GI   L     D+  
Sbjct: 7   EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWE 66

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT------------GNELE-- 105
            H+ DT++   YI D++ +  +     EA   L   G+ F+            G + +  
Sbjct: 67  WHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNF 126

Query: 106 GGHSHPRVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEEIGIKN------GKLAGVF 158
           GG    R       TG  ++  L +++ +     F   +  ++ +KN      G  A   
Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDL-VKNQDGAVVGCTALCI 185

Query: 159 LNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
             GE++ F A   V+ATGG   +Y+ T     N G  +G     GVP++DME  QFHPTG
Sbjct: 186 ETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTG 245

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG-- 267
             G    L+TE  RG G  L+   GERF+        +L  RDVVAR+I +++ EG+G  
Sbjct: 246 IAGAGV-LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304

Query: 268 --------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
                   + LD  G E  + R P +  + +    +DP K+ IPV P  HY MGGI   +
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364

Query: 319 FYRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTIL 364
             +            + GL+A+GE A    HGANRL  NSLL+ VV    +GL +  +I 
Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA 424

Query: 365 REEPKRGA--NDAPYNFDELGDVD-------------SIREIMWNHAGIVRDKSSLLEGL 409
            +   R A  +D   + D L   +             +++E M ++  + R+  ++ +GL
Sbjct: 425 EQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGL 484

Query: 410 KKL------------------------EGVEADQRLKVVAKAVLTLALEREESRGSHYRR 445
           ++L                        E +E D  L   A A    A  R ESRG+H R 
Sbjct: 485 EQLKVIRERLKNARLDDTSSEFNTQRVECLELD-NLMETAYATAVSANFRTESRGAHSRF 543

Query: 446 DFP 448
           DFP
Sbjct: 544 DFP 546


>emb|CAA25487.1| (X00980) succinate dehydrogenase (sdhA) flavoprotein subunit (aa
           1-587) [Escherichia coli] >gi|146199|gb|AAA23895.1|
           (J01619) succinate dehydrogenase large subunit
           [Escherichia coli]
           Length = 588
           
 Score =  162 bits (406), Expect = 7e-39
 Identities = 153/543 (28%), Positives = 239/543 (43%), Gaps = 100/543 (18%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  ++G G AG+  A+ + + G   +++       S++  AQ GI   L     D+  
Sbjct: 7   EFDAVVIGAGGAGIARALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWE 66

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT------------GNELE-- 105
            H+ DT++   YI D++ +  +     EA   L   G+ F+            G + +  
Sbjct: 67  WHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNF 126

Query: 106 GGHSHPRVFTIKSETGKHVIPIL-EKHARELGVNFVRGFVEEIGIKN------GKLAGVF 158
           GG    R       TG  ++  L +++ +     F   +  ++ +KN      G  A   
Sbjct: 127 GGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDL-VKNQDGAVVGCTALCI 185

Query: 159 LNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTG 216
             GE++ F A   V+ATGG   +Y+ T     N G  +G     GVP++DME  QFHPTG
Sbjct: 186 ETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTG 245

Query: 217 FIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG-- 267
             G    L+TE  RG G  L+   GERF+        +L  RDVVAR+I +++ EG+G  
Sbjct: 246 IAGAGV-LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304

Query: 268 --------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
                   + LD  G E  + R P +  + +    +DP K+ IPV P  HY MGGI   +
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364

Query: 319 FYRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTIL 364
             +            + GL+A+GE A    HGANRL  NSLL+ VV    +GL +  +I 
Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA 424

Query: 365 REEPKRGA--NDAPYNFDELGDVD-------------SIREIMWNHAGIVRDKSSLLEGL 409
            +   R A  +D   + D L   +             +++E M ++  + R+  ++ +GL
Sbjct: 425 EQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGL 484

Query: 410 KKL------------------------EGVEADQRLKVVAKAVLTLALEREESRGSHYRR 445
           ++L                        E +E D  L   A A    A  R ESRG+H R 
Sbjct: 485 EQLKVIRERLKNARLDDTSSEFNTQRVECLELD-NLMETAYATAVSANFRTESRGAHSRF 543

Query: 446 DFP 448
           DFP
Sbjct: 544 DFP 546


>dbj|BAA13119.1| (D86573) flavoprotein subunit of succinate dehydrogenase
           [Plasmodium falciparum]
           Length = 620
           
 Score =  161 bits (402), Expect = 2e-38
 Identities = 164/550 (29%), Positives = 247/550 (44%), Gaps = 116/550 (21%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           IVG G AGL +A+ L +    V+ I       S++  AQ GI   L  +  D  R H  D
Sbjct: 27  IVGAGGAGLRSALELSKNKYKVACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYD 86

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
           TI+   ++ D+  +  +  ++ ++   L   G+ F+             G  L+   GG 
Sbjct: 87  TIKGSDWLGDQNAIHYMCREAPDSVLELEEFGLPFSRTKDGKIYQRAFGGQSLKYGKGGQ 146

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVN---FVRGFVEEIGIKN-----GKLAGVFLN 160
           ++ R       TG  ++  L  + + L  N   FV  FV ++ + N     G +     +
Sbjct: 147 AY-RCAAAADRTGHAMLHTL--YGQSLSYNCIFFVEYFVLDLLMLNSNECIGVICINIAD 203

Query: 161 GELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFI 218
           G++ +F     V+ATGG+   Y          G     +A   +PL+D+EFVQFHPTG I
Sbjct: 204 GKIHRFFTPHTVIATGGYGRAYLSCTSAHACTGDGNAIVARSKLPLQDLEFVQFHPTG-I 262

Query: 219 GRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG---- 267
                LITE  RG G  L   +GE F+        +L +RDVV+RA+ +++ E +G    
Sbjct: 263 YPAGCLITEGCRGEGGILRNKEGEAFMMRYAPKAKDLASRDVVSRAMTIEINEQRGCGPN 322

Query: 268 ---VFLDARGI--EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFYR 321
              ++LD   +  E  K+R P +    K   G+D  K  IPV P  HY MGGI  +  Y+
Sbjct: 323 ADHIYLDLTHLPYETLKERLPGIMETAKIFAGVDVTKQYIPVLPTVHYNMGGIPTN--YK 380

Query: 322 TRI--------------------RGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVAR 361
           T++                    +GLYA GEAAS   HGANRL +NSLL+ VV G   A 
Sbjct: 381 TQVLTQNVNFNKQTNKSNEDIIVKGLYAAGEAASASVHGANRLGANSLLDIVVFGKRAAL 440

Query: 362 TILREE----PKRGAN-----DAPYNFDEL----GDVDS------IREIMWNHAGIVRDK 402
           TI+  +    PK  AN     ++    D +    G + +      ++  M  HA + R  
Sbjct: 441 TIMEIDKPNIPKINANTNIGEESIQRLDHIRFNKGSIQTSQLRKKMQICMQKHAAVFRIG 500

Query: 403 SSLLEGLKK------------------------LEGVEADQRLKVVAKAVLTLALEREES 438
             L EG K+                        LE +E +  L + ++ +L  A+ER+ES
Sbjct: 501 PLLQEGYKQILEICSIFKDIEITDKTLTWNTDLLETLELENLLTLASQTILA-AVERKES 559

Query: 439 RGSHYRRDFP 448
           RG+H R DFP
Sbjct: 560 RGAHARDDFP 569


>gi|6322416 Yjl045wp [Saccharomyces cerevisiae]
           >gi|1352266|sp|P47052|DHSX_YEAST PROBABLE SUCCINATE
           DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT 2,
           MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
           COMPLEX II) >gi|1078399|pir||S56817 probable succinate
           dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
           precursor YJL045w, mitochondrial - yeast  (Saccharomyces
           cerevisiae) >gi|1008175|emb|CAA89336.1| (Z49320) ORF
           YJL045w [Saccharomyces cerevisiae]
           Length = 634
           
 Score =  158 bits (395), Expect = 1e-37
 Identities = 151/536 (28%), Positives = 237/536 (44%), Gaps = 98/536 (18%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AA  L E G   + +       S++  AQ GI   L  +  D  + H+ D
Sbjct: 51  VVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDWKSHMYD 110

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL----------------EGGH 108
           T++   ++ D++ +  +  ++ ++   L  +G+ F+  E                 +GG 
Sbjct: 111 TVKGSDWLGDQDAIHYMTREAPKSVIELEHYGMPFSRTEDGRIYQRAFGGQSKDFGKGGQ 170

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVFL----NGEL 163
           ++ R   +   TG  ++  L   A +   +F +  F  ++   NG++ GV      +G +
Sbjct: 171 AY-RTCAVADRTGHAMLHTLYGQALKNNTHFFIEYFAMDLLTHNGEVVGVIAYNQEDGTI 229

Query: 164 LKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGRR 221
            +F A   V+ATGG+   Y          G     ++  G PL D+EFVQFHP+G  G  
Sbjct: 230 HRFRAHKTVIATGGYGRAYFSCTSAHTCTGDGNAMVSRAGFPLEDLEFVQFHPSGIYGSG 289

Query: 222 TYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGVFLDARG 274
             LITE  RG G  L+  +GERF+        +L +RDVV+RAI +++  G+GV  +   
Sbjct: 290 C-LITEGARGEGGFLLNSEGERFMERYAPTAKDLASRDVVSRAITMEIRAGRGVGKNKDH 348

Query: 275 I---------EDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGI-------SVD 317
           I         E  K+R P +        G+D  ++ IPV P  HY MGGI       ++ 
Sbjct: 349 ILLQLSHLPPEVLKERLPGISETAAVFAGVDVTQEPIPVLPTVHYNMGGIPTKWTGEALT 408

Query: 318 IFYRTR----IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTI-------LRE 366
           I   T     I GL A GEAA    HGANRL +NSLL+ VV G  VA TI       L  
Sbjct: 409 IDEETGEDKVIPGLMACGEAACVSVHGANRLGANSLLDLVVFGRAVANTIADTLQPGLPH 468

Query: 367 EPKRG--ANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSLLEGLKKLEG 414
           +P      +++  N D++ +            +++  M     + R + +L EG++ +  
Sbjct: 469 KPLASNIGHESIANLDKVRNARGSLKTSQIRLNMQRTMQKDVSVFRTQDTLDEGVRNITE 528

Query: 415 VEAD-----------------------QRLKVVAKAVLTLALEREESRGSHYRRDF 447
           V+                         Q L   A      A +R+ESRG+H R D+
Sbjct: 529 VDKTFEDVHVSDKSMIWNSDLVETLELQNLLTCATQTAVSASKRKESRGAHAREDY 584


>pir||T51815 succinate dehydrogenase (EC 1.3.99.1) flavoprotein alpha chain
           [imported] - Arabidopsis thaliana
           >gi|3660471|emb|CAA05025.1| (AJ001809) succinate
           dehydrogenase flavoprotein alpha subunit [Arabidopsis
           thaliana] >gi|8843734|dbj|BAA97282.1| (AB018119)
           succinate dehydrogenase flavoprotein alpha subunit
           [Arabidopsis thaliana]
           Length = 634
           
 Score =  158 bits (395), Expect = 1e-37
 Identities = 159/540 (29%), Positives = 234/540 (42%), Gaps = 106/540 (19%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AAI L E G + + I       S++  AQ GI   L  +  D  R H+ D
Sbjct: 54  VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYD 113

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL----------------EGGH 108
           T++   ++ D++ +  +  ++ +A   L ++G+ F+  E                 +GG 
Sbjct: 114 TVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQ 173

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGI-----KNGKLAGVFL---- 159
           ++ R       TG  ++  L   A +    F   FVE   +      +G   GV      
Sbjct: 174 AY-RCACAADRTGHALLHTLYGQAMKHNTQF---FVEYFALDLLMASDGSCQGVIALNME 229

Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
           +G L +F +   ++ATGG+   Y          G     +A  G+PL+D+EFVQFHPTG 
Sbjct: 230 DGTLHRFRSSQTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGI 289

Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKGV-- 268
            G    LITE  RG G  L   +GERF+        +L +RDVV+R++ +++ EG+GV  
Sbjct: 290 YGAGC-LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGP 348

Query: 269 -------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
                   L+    E  K+R P +        G+D  K+ IPV P  HY MGGI  +   
Sbjct: 349 HKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHG 408

Query: 321 RTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKR 370
                        I GL A GEAA    HGANRL +NSLL+ VV G   A  +  E  K 
Sbjct: 409 EVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRV-AEISKP 467

Query: 371 GANDAPYNFD----ELGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLK 410
           G    P   D     +  +D +R                 IM N+A + R + +L EG +
Sbjct: 468 GEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVFRTQETLEEGCQ 527

Query: 411 KLE-------GVEADQR----------------LKVVAKAVLTLALEREESRGSHYRRDF 447
            ++        V+   R                L + A   +  A  R+ESRG+H R DF
Sbjct: 528 LIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDF 587


>emb|CAA54872.1| (X77919) putative succinate dehydrogenase large subunit [Coxiella
           burnetii]
           Length = 532
           
 Score =  157 bits (394), Expect = 2e-37
 Identities = 141/481 (29%), Positives = 214/481 (44%), Gaps = 98/481 (20%)

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTG-------NELEGGHSHP-- 111
           H+ DT++   Y+ D++ +  +  ++  +   L  +G+ F+            GGH+    
Sbjct: 15  HMFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFG 74

Query: 112 -----RVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIK-----NGKLAGVFL-- 159
                R       TG  ++  L +   E G +F   + E  GI       G +AG+    
Sbjct: 75  KEMARRTCACADRTGHAMLHTLYQKNVEAGTHF---YYEWYGIDLVRGAQGGIAGMIAMN 131

Query: 160 --NGELLKFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT 215
               EL+ F   A + ATGG   +Y  T+    N G  IG +   G+P++DMEF QFHPT
Sbjct: 132 METSELVFFKSRATIFATGGAGRIYETTSNAYTNTGDGIGMVLRAGLPVQDMEFWQFHPT 191

Query: 216 GFIGRRTYLITEAVRGAGAKLVTGDGERF-------VNELETRDVVARAIYLKMLEGKGV 268
           G  G    LITE  RG G  L+  DGERF       + +L+ RDVVAR+I  +++ G GV
Sbjct: 192 GIYGVGC-LITEGARGEGGYLINKDGERFMERYSPHLKDLDCRDVVARSILQEVMAGGGV 250

Query: 269 ---------FLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDI 318
                     LD  G +  ++R P +  + +K   +D  K+ IP+ P  HY MGGI  +I
Sbjct: 251 GPKKDHVLLKLDHLGEKVLRERLPGIIELSEKFANVDITKEPIPILPTCHYMMGGIPTNI 310

Query: 319 FYRTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVV----SGLEVARTIL 364
             +            I GL+A GE A    HGANRL +NSLL+ VV     GL +   + 
Sbjct: 311 HGQALTVDENGKDQIIEGLFAAGECACVSVHGANRLGTNSLLDLVVFGRAIGLHLEEALK 370

Query: 365 REEPKRGAN--------------DAPYNFDELGDV-DSIREIMWNHAGIVRDKSSLLEGL 409
            E   R  N              + P N +    +   +R+ M    G+ R++  + +GL
Sbjct: 371 TELKHRSENPDDIDAAIARLKRWEKPNNVENPALLRQEMRKAMSEDFGVFREEQKMKQGL 430

Query: 410 KKLEGV-EADQRLKV----------------------VAKAVLTLALEREESRGSHYRRD 446
           ++L+ + E  QR K+                      V+ A    A +R ESRG+H R D
Sbjct: 431 ERLQKLNERLQRAKLTDTSRTFNNARIEALELDNLMEVSYATAVSAQQRTESRGAHSRYD 490

Query: 447 F 447
           +
Sbjct: 491 Y 491


>gb|AAC72374.1| (AF095939) succinate dehydrogenase Fp subunit [Gallus gallus]
           Length = 499
           
 Score =  157 bits (392), Expect = 3e-37
 Identities = 135/437 (30%), Positives = 201/437 (45%), Gaps = 84/437 (19%)

Query: 99  FTGNELE---GGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKL 154
           F G  L+   GG +H R   +   TG  ++  L   +     + FV  F  ++ ++NG+ 
Sbjct: 8   FGGQSLQFGKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGEC 66

Query: 155 AGVFL----NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDME 208
            GV      +G + +F A   V+ATGG+   Y        + G     +   G+P +D+E
Sbjct: 67  RGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLE 126

Query: 209 FVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLK 261
           FVQFHPTG  G    LITE  RG G  L+   GERF+        +L +RDVV+R++ ++
Sbjct: 127 FVQFHPTGIYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIE 185

Query: 262 MLEGKG-------VFLDARGI--EDFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTM 311
           + EG+G       V+L    +  +    R P +  + +   G+D  K+ IPV P  HY M
Sbjct: 186 IREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNM 245

Query: 312 GGISVDIFYRTRI-----------RGLYAIGEAASNGFHGANRLASNSLLECVVSG---- 356
           GGI  +  Y+ ++            GLYA GEAAS   HGANRL +NSLL+ VV G    
Sbjct: 246 GGIPTN--YKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACA 303

Query: 357 LEVARTILREEP-----KRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRD 401
           L +A T    EP          ++  N D+L   D          ++++ M +HA + R 
Sbjct: 304 LTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRT 363

Query: 402 KSSLLEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREES 438
            S L EG +KL  +  D                       Q L + A   +  A  R+ES
Sbjct: 364 GSILQEGCEKLSQIYCDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKES 423

Query: 439 RGSHYRRDFPFMRKEFE 455
           RG+H R D+ F   +F+
Sbjct: 424 RGAHAREDYKFRIDDFD 440


>gb|AAD15493.1| (AC006439) putative succinate dehydrogenase flavoprotein subunit
           [Arabidopsis thaliana]
           Length = 632
           
 Score =  156 bits (390), Expect = 6e-37
 Identities = 156/540 (28%), Positives = 238/540 (43%), Gaps = 106/540 (19%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIRIHVLD 64
           +VG G AGL AAI L E G + + I       S++  AQ GI   L  +  D  R H+ D
Sbjct: 52  VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYD 111

Query: 65  TIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------------GNELE---GGH 108
           T++   ++ D++ +  +  ++ +A   L ++G+ F+             G  LE   GG 
Sbjct: 112 TVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQ 171

Query: 109 SHPRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGI-----KNGKLAGVFL---- 159
           ++ R       TG  ++  L   A +    F   FVE   +      +G   GV      
Sbjct: 172 AY-RCACAADRTGHALLHTLYGQAMKHNTQF---FVEYFALDLIMNSDGTCQGVIALNME 227

Query: 160 NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
           +G L +F A   ++ATGG+   Y          G     +A  G+PL+D+EFVQFHPTG 
Sbjct: 228 DGTLHRFHAGSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGI 287

Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG--- 267
            G    LITE  RG G  L   +GE+F++       +L +RDVV+R++ +++ +G+G   
Sbjct: 288 YGAGC-LITEGARGEGGILRNSEGEKFMDRYAPTARDLASRDVVSRSMTMEIRQGRGAGP 346

Query: 268 ------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
                 ++L+    E  K+R P +        G+D  ++ IPV P  HY MGGI  +   
Sbjct: 347 MKDYLYLYLNHLPPEVLKERLPGISETAAIFAGVDVTREPIPVLPTVHYNMGGIPTNYHG 406

Query: 321 RTR----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKR 370
                        + GL A GEAA    HGANRL +NSLL+ VV G   A  +  E  K 
Sbjct: 407 EVITLRGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRV-AEIQKP 465

Query: 371 GANDAPYNFD----ELGDVDSIR----------------EIMWNHAGIVRDKSSLLEGLK 410
           G    P   D     +  +D IR                 +M N+A + R + +L EG  
Sbjct: 466 GEKLKPLEKDAGEKSIEWLDRIRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCD 525

Query: 411 KLEG---------------------VEADQRLKVVAKAVLTL--ALEREESRGSHYRRDF 447
            ++                      +E  +   ++  A +T+  A  R+ESRG+H R DF
Sbjct: 526 LIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDF 585


>pdb|1QLA|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes >gi|6730467|pdb|1QLA|D Chain D,
           Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes >gi|6730470|pdb|1QLB|A Chain A,
           Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes >gi|6730473|pdb|1QLB|D Chain D,
           Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
           Length = 656
           
 Score =  151 bits (378), Expect = 1e-35
 Identities = 156/547 (28%), Positives = 246/547 (44%), Gaps = 109/547 (19%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGP-KSKDSNSYLAQAGIAFPL-----VEGDSIRIH 61
           ++GGGLAGL AA++  +KG+   ++     K S+S  AQ G+   L      +GD+  +H
Sbjct: 10  VIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLH 69

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGV-------------------TFTGN 102
            +DT++   +  D++V    ++ + +A   L + GV                   T T  
Sbjct: 70  FMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEE 129

Query: 103 ELEGGHSHPRVFT---------IKSETGKHVIPILEKHARELGVNFVRGFVEEIGI--KN 151
           +   G  H R F              TG  ++  +     +LGV+ ++   E I +  ++
Sbjct: 130 DFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVS-IQDRKEAIALIHQD 188

Query: 152 GKLAGV----FLNGELLKFDA--VVVATGGFSGLYRFT--AGVKENIGLLIGDLALKGVP 203
           GK  G      + G+++ + A   ++ATGG+  +Y+ T  A V E  G  I  L      
Sbjct: 189 GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA-LETGIAQ 247

Query: 204 LRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVAR 256
           L +ME VQFHPT        L+TE  RG G  L   DG RF+        EL +RDVV+R
Sbjct: 248 LGNMEAVQFHPTPLFPSGI-LLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSR 306

Query: 257 AIYLKMLEGKGV--------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTP 305
            +   + +GKGV        +LD    G +  +     V  + +   GIDP +   PV P
Sbjct: 307 RMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLP 366

Query: 306 VAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEV------ 359
           + HY+MGGI  D     +++GL++ GEAA    HG NRL  NS+ E VV+G+ V      
Sbjct: 367 MQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE 426

Query: 360 --ARTILREEPK-------------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSS 404
             A T +  E K             +   ++    D     + ++++M ++ GI RD   
Sbjct: 427 HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPH 486

Query: 405 LLEGLKKLEGV------------------EADQRLKV-----VAKAVLTLALEREESRGS 441
           L + +K+LE +                  E ++  +V     VA  V   AL+R ESRG+
Sbjct: 487 LEKSVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGA 546

Query: 442 HYRRDFP 448
           H R D+P
Sbjct: 547 HNREDYP 553


>emb|CAA74087.1| (Y13760) putative flavoprotein subunit [Shewanella frigidimarina]
           Length = 588
           
 Score =  150 bits (376), Expect = 2e-35
 Identities = 151/550 (27%), Positives = 229/550 (41%), Gaps = 116/550 (21%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +V ++G G AG+ AA+ + ++G   +++       S++  AQ GI   L     D   
Sbjct: 7   EFDVIVIGAGGAGMRAALQISKEGKSCALLSKVFPTRSHTVSAQGGITVALGNAHEDHWE 66

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT------------GNELE-- 105
            H+ DT++   +I D+E +  +     EA   L   G+ F+            G +    
Sbjct: 67  QHMYDTVKGSDFIGDQEAIEFMCQTGPEAIIELEQMGLPFSRFEDGTIYQRPFGGQSRNF 126

Query: 106 GGHSHPRVFTIKSETGKHVIPILE----KHAREL-----GVNFVRGFVEEIGIKNGKLAG 156
           GG    R       TG  ++  L     KH  ++      ++ V+    E  +  G  A 
Sbjct: 127 GGEQAARTAAAADRTGHALLHCLYQQNVKHKTDVYSEWYALDLVKN---EDDVVVGCTAI 183

Query: 157 VFLNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHP 214
               GE++ F A   ++ATGG   +Y  T     N G  +G  A  GV L+DME  QFHP
Sbjct: 184 EIETGEIVYFKAKATILATGGAGRIYASTTNAHINTGDGVGMAARAGVQLQDMEMWQFHP 243

Query: 215 TGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLEGKG 267
           TG  G    L+TE  RG G  L+  DGERF+        +L +RDVVAR++  ++ EG+G
Sbjct: 244 TGIAGAGV-LVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIREGRG 302

Query: 268 ----------VFLDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
                     + LD  G E  + R P V  + +    IDP    IPV P  HY MGG+  
Sbjct: 303 LDGPLGPHCLLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVLPTCHYMMGGLPT 362

Query: 317 DIFYRT----------RIRGLYAIGEAASNGFHGANRLASNSLLECVVSG---------- 356
            +  +            + GL+A+GE A    HGANRL  NSLL+ VV G          
Sbjct: 363 KVSGQVIRMNDDGTEQDVLGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHLGKA 422

Query: 357 ------------LEVARTILR----EEPKRGANDAPYNFDELGDVDSIREIMWNHAGIVR 400
                       +E++ ++ R    E  K G   A    D       ++  M  +  + R
Sbjct: 423 LDATPDPKAASDVEISASLARLNRWESNKDGEEPAVIRKD-------LQLCMQLNFSVFR 475

Query: 401 DKSSLLEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREE 437
              ++ EGL++L+ ++                           L   A A    A  R E
Sbjct: 476 SGDAMAEGLEQLQAIQKRLENAKLSDNSTEFNTQRIECLELDNLMATALATAYAANFRTE 535

Query: 438 SRGSHYRRDF 447
           SRG+H R D+
Sbjct: 536 SRGAHSREDY 545


>sp|Q59767|NADB_RHORU L-ASPARTATE OXIDASE (QUINOLINATE SYNTHETASE B)
           >gi|11356364|pir||T51327 L-aspartate oxidase (EC
           1.4.3.16) [imported] - Rhodospirillum rubrum (fragment)
           >gi|1498754|gb|AAC45129.1| (U65510) L-aspartate oxidase
           [Rhodospirillum rubrum]
           Length = 277
           
 Score =  150 bits (374), Expect = 4e-35
 Identities = 92/235 (39%), Positives = 119/235 (50%), Gaps = 22/235 (9%)

Query: 236 LVTGDGERFVN------ELETRDVVARAIYLKMLEGKGVFLDARGI--EDFKDRFPYVYS 287
           LV   G RF+       EL  RDVV R +   +  GKG FLDAR      F   FP VY+
Sbjct: 2   LVDAQGRRFMTALDPAAELAPRDVVTRGVAAAIKAGKGAFLDARTALGAAFPQAFPTVYA 61

Query: 288 VLKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASN 347
             +  GIDP +  IP+ P AHY MGG+  D F RT I GL+A+GE A  G HGANRLASN
Sbjct: 62  ACRASGIDPVRQPIPIAPAAHYHMGGVLTDSFGRTSIDGLWAVGEVACTGAHGANRLASN 121

Query: 348 SLLECVVSGLEVARTILREEPKRG--------ANDAPYNFDELGDVDSIREIMWNHAGIV 399
           SLLE VV    VA  +     +RG         +  P   ++   +  +R  M    G++
Sbjct: 122 SLLEAVVFAARVAGDVGAAPLRRGWPPPAPPDLSPRPPPAEDAAAITRLRATMSARVGVI 181

Query: 400 RDKSSLLEGLKKLEGVEADQR------LKVVAKAVLTLALEREESRGSHYRRDFP 448
           RD   L   L  +E + A  R      +   A+ +   AL R ESRG+H+R D+P
Sbjct: 182 RDGQGLESALATIETIAAGARSPRLRAMTTAARLITAAALARRESRGAHFRADYP 236


>pir||C72035 succinate dehydrogenase, flavoprotein chain CP1083 [imported] -
           Chlamydophila pneumoniae (strains CWL029 and AR39)
           >gi|4377099|gb|AAD18927.1| (AE001660) Succinate
           Dehydrogenase [Chlamydophila pneumoniae CWL029]
           >gi|7189997|gb|AAF38855.1| (AE002264) succinate
           dehydrogenase, flavoprotein subunit [Chlamydophila
           pneumoniae AR39] >gi|8979162|dbj|BAA98997.1| (AP002547)
           succinate dehydrogenase [Chlamydophila pneumoniae J138]
           Length = 626
           
 Score =  148 bits (369), Expect = 2e-34
 Identities = 163/564 (28%), Positives = 241/564 (41%), Gaps = 123/564 (21%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPL----VEGDSIR 59
           +V +VGGGLAGL AA+ L   G+ V ++   K K S+S  AQ GI   L     E DS  
Sbjct: 6   KVIVVGGGLAGLSAAMQLANLGIIVELVSLTKVKRSHSVCAQGGINAALNLKPEEEDSPY 65

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTF----TGN---ELEGGHSHPR 112
           +H  DTI+ G ++ D+  V  +   +      L + G  F    +GN      GG  + R
Sbjct: 66  VHAYDTIKGGDFLADQPPVLEMCLAAPRIIKMLDNFGCPFNRGPSGNLDVRRFGGTLYHR 125

Query: 113 VFTIKSETGKHVIPILEK------HARELGVNFVRGFVEEIGIKNGKLAGVFLNG----- 161
                + TG+ ++  L++      HA  +       FV  +   +G+  G+ L       
Sbjct: 126 TVFCGASTGQQLMYTLDEQVRRREHAGRVIKRENHEFVRLVTDHSGRACGIILMNLFNNR 185

Query: 162 -ELLKFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR 220
            E+L+ DAV++ATGG   +++ +       G   G L L+G+   + EF+Q HPT   GR
Sbjct: 186 LEILRGDAVIIATGGPGVIFKMSTNSTFCTGAANGRLFLQGMAYANPEFIQIHPTAIPGR 245

Query: 221 -RTYLITEAVRGAGAKL-VTGDGERFV---------------------------NELETR 251
            +  LI+E+VRG G ++ V GD  + +                             L +R
Sbjct: 246 DKLRLISESVRGEGGRVWVPGDSSKRIVFPDGSERPCGETGAPWYFLEDMYPAYGNLVSR 305

Query: 252 DVVARAIYLKMLEGKGV------FLDARGI-EDFKDRFPYVYSVLKK-EGIDPGKDLIPV 303
           DV ARAI      G G+      +LD   + E  + +   V  + KK  G DP    + +
Sbjct: 306 DVGARAILRVCEAGLGIDGRMEAYLDVTHLPEKTRHKLEVVLDIYKKFTGEDPNTVPMRI 365

Query: 304 TPVAHYTMGGISVD------------IFYRTRIRGLYAIGEAASNGFHGANRLASNSLLE 351
            P  HY+MGG  VD                T I G +  GE+    +HGANRL +NSLL 
Sbjct: 366 FPAVHYSMGGAWVDWPAADDPDRDSRFRQMTNIPGCFNCGESDFQ-YHGANRLGANSLLS 424

Query: 352 C----VVSGLEVARTI----------------LREEPKRGANDAPYNFDELGDV--DSIR 389
           C    +VSG E +R I                L++E +  A     +  E   V  + I 
Sbjct: 425 CLFAGLVSGDEASRFIEAFGASQATSSDFDRALQQEKEENARLLSASGKENIFVLHEEIA 484

Query: 390 EIMWNHAGIVRDKSSLLEGLKKLEGVEADQRLKVV------------------------- 424
           +IM  +  + R+   L E + KL+  E  +RLK V                         
Sbjct: 485 KIMVRNVTVKRNNRDLQETMDKLK--EFRERLKNVSVLDSSPFANKSFHFVRQMGPMLEL 542

Query: 425 AKAVLTLALEREESRGSHYRRDFP 448
           A A+   AL R E RGSHY+ +FP
Sbjct: 543 ALAITKGALLRNEFRGSHYKPEFP 566


>pir||B81655 succinate dehydrogenase, flavoprotein chain TC0881 [imported] -
           Chlamydia muridarum (strain Nigg)
           >gi|7190909|gb|AAF39677.1| (AE002354) succinate
           dehydrogenase, flavoprotein subunit [Chlamydia
           muridarum]
           Length = 625
           
 Score =  147 bits (368), Expect = 2e-34
 Identities = 162/566 (28%), Positives = 242/566 (42%), Gaps = 134/566 (23%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGDSIRIHVL 63
           I+GGGLAGL AA+ L ++G+ V +    K K S+S  AQ GI   L    E DS  IH  
Sbjct: 9   IIGGGLAGLSAAMQLADRGMLVELFSLTKVKRSHSVCAQGGINAALNLKDENDSPYIHAY 68

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT----GN---ELEGGHSHPRVFTI 116
           DTI+ G ++ D+  V  +   +      L   G  F     GN      GG  + R    
Sbjct: 69  DTIKGGDFLADQPPVLEMCLTAPRIIHMLDRFGCPFNRDAQGNLDVRRFGGTLYYRTVFC 128

Query: 117 KSETGKHVIPILEKHAR--ELGVNFVRG----FVEEIGIKNGKLAGVFLNG------ELL 164
            + TG+ ++  +++  R  E     ++     FV  I  + G+  GV +        E++
Sbjct: 129 GASTGQQLMYTMDEQVRRRECQGKIIKRENHEFVRLITNEEGRACGVVVMNLFNNRLEVV 188

Query: 165 KFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG-RRTY 223
           + DAV++ATGG   +++ +       G   G L ++G+   + EF+Q HPT   G  +  
Sbjct: 189 QGDAVIIATGGLGVIFKMSTNSTICTGAANGRLFMQGMHYANPEFIQIHPTAIPGIDKLR 248

Query: 224 LITEAVRGAGAK----------LVTGDGER-----------FVNE-------LETRDVVA 255
           LI+E+VRG G +          ++  DG R           F+ E       L +RDV A
Sbjct: 249 LISESVRGEGGRVWVPGCSSKTIIFPDGSRRPCGETGKPWYFLEEMYPAYGNLVSRDVGA 308

Query: 256 RAIYLKMLEGKG------VFLDARGIE-DFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVA 307
           RAI      G G      VFLD   +  +  ++   V  +  K  G DP K  + + P  
Sbjct: 309 RAILQVCEAGMGIDGRYEVFLDVTHLPIETLNKLEVVLDIYYKFTGEDPKKVPMRIFPAV 368

Query: 308 HYTMGGISVD------------IFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVS 355
           HY+MGG  VD              + T I G +  GE+    +HGANRL +NSLL C+ +
Sbjct: 369 HYSMGGAWVDWPASDDEDRNSRYRHMTNIPGCFNCGESDFQ-YHGANRLGANSLLSCLYA 427

Query: 356 GL----EVARTILREEPKRGANDAPYNFDELGDV------------------------DS 387
           GL    E AR I           +PY+  +L                           + 
Sbjct: 428 GLVAGDEAARFI------ESFGSSPYSQQDLKHALQQEEELSQEILSRKGGENIFSLHEE 481

Query: 388 IREIMWNHAGIVRDKSSLLEGLKKLEGVEADQRLKVV----------------------- 424
           I  +M N+  + R+ ++L+E L+KL+  E  +RLK V                       
Sbjct: 482 IARVMVNNVTVKRENNALVETLQKLK--EFRERLKKVSVHDSSRFANKTFHFVRQMEPML 539

Query: 425 --AKAVLTLALEREESRGSHYRRDFP 448
             A A+   AL R E RGSHY+ +FP
Sbjct: 540 ELALAITKGALLRNEFRGSHYKPEFP 565


>sp|P17412|FRDA_WOLSU FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT >gi|320457|pir||B44954
           fumarate reductase (EC 1.3.99.1) flavoprotein -
           Wolinella succinogenes >gi|48513|emb|CAA35875.1|
           (X51509) flavoprotein [Wolinella succinogenes]
           >gi|2281999|emb|CAA04214.1| (AJ000662) fumarate
           reductase flavoprotein subunit [Wolinella succinogenes]
           Length = 656
           
 Score =  145 bits (363), Expect = 8e-34
 Identities = 154/547 (28%), Positives = 244/547 (44%), Gaps = 109/547 (19%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGP-KSKDSNSYLAQAGIAFPL-----VEGDSIRIH 61
           ++GGGLAGL AA++  +KG+   ++     K S+S  AQ G+   L      +GD+  +H
Sbjct: 10  VIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLH 69

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGV-------------------TFTGN 102
            +DT++   +  D++V    ++ + +A   L + GV                   T T  
Sbjct: 70  FMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEE 129

Query: 103 ELEGGHSHPRVFT---------IKSETGKHVIPILEKHARELGVNFVRGFVEEIGI--KN 151
           +   G  H R F              TG  ++  +     +LGV+ ++   E I +  ++
Sbjct: 130 DFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVS-IQDRKEAIALIHQD 188

Query: 152 GKLAGV----FLNGELLKFDA--VVVATGGFSGLYRFT--AGVKENIGLLIGDLALKGVP 203
           GK  G      + G+++ + A   ++ATGG+  +Y+ T  A V E  G  I  L      
Sbjct: 189 GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIA-LETGIAQ 247

Query: 204 LRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKL-------VTGDGERFVNELETRDVVAR 256
           L +ME VQFHPT        L+TE  RG G  L       +  D E    EL +RDVV+R
Sbjct: 248 LGNMEAVQFHPTPLFPSGI-LLTEGCRGDGGILRRCGWTPIHADYEPEKKELASRDVVSR 306

Query: 257 AIYLKMLEGKGV--------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTP 305
            +   + +GKGV        +LD    G +  +     V  + +   GIDP +   PV P
Sbjct: 307 RMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLP 366

Query: 306 VAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEV------ 359
           + HY+MGGI  D     +++GL++ GEAA    HG NRL  NS+ E VV+G+ V      
Sbjct: 367 MQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE 426

Query: 360 --ARTILREEPK-------------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSS 404
             A T +  E K             +   ++    D     + ++++M ++ GI RD   
Sbjct: 427 HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPH 486

Query: 405 LLEGLKKLEGV------------------EADQRLKV-----VAKAVLTLALEREESRGS 441
           L + +K+LE +                  E ++  +V     VA  V   AL+R ESRG+
Sbjct: 487 LEKSVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGA 546

Query: 442 HYRRDFP 448
           H R D+P
Sbjct: 547 HNREDYP 553


>sp|P31039|DHSA_BOVIN SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT,
           MITOCHONDRIAL PRECURSOR (FP) (FLAVOPROTEIN SUBUNIT OF
           COMPLEX II) >gi|387584|gb|AAA30758.1| (M60879) succinate
           dehydrogenase flavoprotein subunit [Bos taurus]
           Length = 665
           
 Score =  145 bits (362), Expect = 1e-33
 Identities = 150/553 (27%), Positives = 238/553 (42%), Gaps = 108/553 (19%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKD-SNSYLAQAGIAFPL--VEGDSIR 59
           + +  +VG G AGL AA  L E G + + +       S++  AQ GI   L  +E D+ R
Sbjct: 62  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 121

Query: 60  IHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNEL--------------- 104
            H  DT++   ++ D++ +  +  ++  +   L ++G+ F+  E                
Sbjct: 122 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 181

Query: 105 -EGGHSHPRVFTIKSETGKHVIPILEKHARELGVN-FVRGFVEEIGIKNGKLAGVFLNGE 162
            +GG +H R   +   TG  ++  L   +     + FV  F  ++ +++G+  GV     
Sbjct: 182 GKGGQAH-RCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMESGECRGVIA--- 237

Query: 163 LLKFDAVVVATGG---------FSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFH 213
           L   + V     G         +   Y        + G     +   G+P +D+EFVQFH
Sbjct: 238 LCIEERVHPPHQGQEHCHRHRSYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFH 297

Query: 214 PTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGK 266
           PTG  G    LITE  RG G  L+   GERF+        +L +RDVV+R++ L++ EG+
Sbjct: 298 PTGIYGAGC-LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGR 356

Query: 267 G-------VFLDARGIE--DFKDRFPYVY-SVLKKEGIDPGKDLIPVTPVAHYTMGGISV 316
           G       V+L    +       R P +  + +   G+D  K+ IPV P  HY MGGI  
Sbjct: 357 GCGPEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPT 416

Query: 317 DIFYRTRIR-----------GLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILR 365
           +  Y+ ++            GLYA GEAA    HGANRL +NSLL+ VV G   A +I  
Sbjct: 417 N--YKGQVLRHVNGQDQGVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAE 474

Query: 366 E----------EPKRGANDAPYNFDELGDVD----------SIREIMWNHAGIVRDKSSL 405
                      +P  G  ++  N D+L   +          ++++ M +HA + R  S L
Sbjct: 475 SCRPGDKVPSIKPNAG-EESVMNLDKLRFANGSIRTSELRLNMQKSMQSHAAVFRVGSVL 533

Query: 406 LEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALEREESRGSH 442
            EG +K+  +  D                       Q L + A   +  A  R+ESRG  
Sbjct: 534 QEGCEKISSLYGDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGP 593

Query: 443 YRRDFPFMRKEFE 455
            R DF     E++
Sbjct: 594 RREDFKERVDEYD 606


>pir||G81384 succinate dehydrogenase (EC 1.3.99.1) flavoprotein Cj0409
           [imported] - Campylobacter jejuni (strain NCTC 11168)
           >gi|6967883|emb|CAB74245.1| (AL139075) fumarate
           reductase flavoprotein subunit [Campylobacter jejuni]
           Length = 663
           
 Score =  143 bits (356), Expect = 5e-33
 Identities = 157/559 (28%), Positives = 233/559 (41%), Gaps = 127/559 (22%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGP-KSKDSNSYLAQAGIAFPLV-----EGDSIRIH 61
           ++GGGLAGL AAI + + G  V+++     K S+S   Q G+   L      EGD+  +H
Sbjct: 10  VIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGAKGEGDNEDLH 69

Query: 62  VLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTG-----------------NEL 104
             DT++   +  D+EV       + +A   L + GV +T                   E 
Sbjct: 70  FADTVKGSDWGCDQEVARMFAQTAPKAVRELAAWGVPWTRVTKGPRTVVINAQKTVIEEK 129

Query: 105 EGGHS-----------------------HPRVFTIKSETGKHVIPILEKHARELGVNFVR 141
           E  H                        H  ++ + +E  KH + I++   R   V  + 
Sbjct: 130 EEAHGLINARDFGGTKKWRTCYIADATGHCMLYGVANEAIKHQVKIID---RMEAVRIIH 186

Query: 142 GFVEEIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFT--AGVKENIGLLIGDL 197
              + +G+    +A    NG+L+ + A   ++ATGG+  +Y+ T  A + E  G  I  L
Sbjct: 187 DGKKCLGV----IARDLTNGQLIAYIARGTMIATGGYGRIYKQTTNAVICEGTGAAIA-L 241

Query: 198 ALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELET 250
                 L +ME VQFHPT  +     L+TE  RG G  L   DG RF+        EL +
Sbjct: 242 ETGLCRLSNMEAVQFHPTPIVPSGI-LLTEGCRGDGGILRDVDGYRFMPDYEPEKKELAS 300

Query: 251 RDVVARAIYLKMLEGKGV--------FLDAR--GIEDFKDRFPYVYSVLKK-EGIDPG-- 297
           RDVV+R +   + +GKGV        +LD    G    +     V  + K   GIDP   
Sbjct: 301 RDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILGRAHVEKNLRDVQDICKTFNGIDPADE 360

Query: 298 --KDLIPVTPVAHYTMGGISVDIFYRTR-IRGLYAIGEAASNGFHGANRLASNSLLECVV 354
             K   PV P+ HY+MGGI       ++ + GL+A GEAA    HG NRL  NS  E VV
Sbjct: 361 GPKGWAPVLPMQHYSMGGIRTKPTGESQWLNGLFACGEAACWDMHGFNRLGGNSCAETVV 420

Query: 355 SGL-------------------EVARTILREEPK--RGANDAPYNFDELGDVDSIREIMW 393
           +G+                    V +  L +E +  +   D     +     + ++EIMW
Sbjct: 421 AGMIVGDYFADYCKNNGEVIDTNVVKDFLTKEYQYLKSLVDKEGKHNVFEIKNRMKEIMW 480

Query: 394 NHAGIVRDKSSLLEGLKKLEGVEADQ------------------------RLKVVAKAVL 429
           +   I R    L E + +LE +  D                         R+  +A  V 
Sbjct: 481 DKVAIFRTGEGLKEAVDELEKLYKDSQDVKVHCKELDCANPELEEAYRVPRMLKIALCVA 540

Query: 430 TLALEREESRGSHYRRDFP 448
             AL R ESRG+HYR D+P
Sbjct: 541 YGALLRTESRGAHYREDYP 559


>pir||S73049 hypothetical protein L308_F3_120 - Mycobacterium leprae
           >gi|467190|gb|AAA17348.1| (U00022) L308_f3_120
           [Mycobacterium leprae]
           Length = 401
           
 Score =  143 bits (356), Expect = 5e-33
 Identities = 117/379 (30%), Positives = 177/379 (45%), Gaps = 51/379 (13%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNSYLAQAGIAFPL--VEGDSIRIHV 62
           +V IVG G AG+ AA+    +     +       S++  AQ G+   L  VE D+   H 
Sbjct: 8   DVVIVGAGGAGMRAAVEAGPRVRTAVLTKLYPTRSHTGAAQGGMCAALANVEDDNWEWHA 67

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT-------GNELEGGHSHP---- 111
            DT++ G Y+ D++ V  +  ++ +A   L   G+ F             GGH+      
Sbjct: 68  FDTVKGGDYLADQDAVEIMCKEAIDAVLDLEKMGMPFNRTPEGRIDQRRFGGHTRDHGKA 127

Query: 112 ---RVFTIKSETGKHVIPILEKHARELGVNFVRGF---------VEEIGIKNGKLAGVFL 159
              R       TG  ++  L ++  +  V F   F              +  G +A    
Sbjct: 128 PVRRACYAADRTGHMILQTLYQNCVKHDVEFFNEFYALDLVLTQTPSGPVTTGVVAYELA 187

Query: 160 NGELLKFD--AVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
            G++  F   AVV+ATGG   +Y+ T+      G  IG +  KG+PL DMEF QFHPTG 
Sbjct: 188 TGDIHVFHTKAVVIATGGSGRMYKTTSNAHTLTGDGIGIVFRKGLPLEDMEFHQFHPTGL 247

Query: 218 IGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAIYLKMLEGKG--- 267
            G    LI+EAVRG G +L+ G+ ERF+        +L  RD+VAR++ L++LEG+G   
Sbjct: 248 AG-LGILISEAVRGEGGRLLNGENERFMEHYAPTIVDLAPRDIVARSMVLEVLEGRGAGP 306

Query: 268 ----VFLDAR--GIEDFKDRFPYVYSVLKKE-GIDPGKDLIPVTPVAHYTMGGISVDIFY 320
               V++D R  G E  + + P +    +   G+DP  +L+PV P  HY MGGI   +  
Sbjct: 307 HKDYVYIDVRHLGEEVLESKLPDITEFSRTYLGVDPVHELVPVYPTCHYVMGGIPTTVTG 366

Query: 321 R------TRIRGLYAIGEA 333
           +      + + GLYA   A
Sbjct: 367 QVLRDNTSTVPGLYAAANA 385


>pir||T43189 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
           chain - fission yeast (Schizosaccharomyces pombe)
           (fragment) >gi|1749734|dbj|BAA13924.1| (D89263) similar
           to Saccharomyces cerevisiae succinate dehydrogenase,
           SWISS-PROT Accession Number Q00711 [Schizosaccharomyces
           pombe]
           Length = 487
           
 Score =  142 bits (355), Expect = 7e-33
 Identities = 136/434 (31%), Positives = 192/434 (43%), Gaps = 91/434 (20%)

Query: 99  FTGNELE---GGHSHPRVFTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGI----KN 151
           F G  LE   GG ++ R   +   TG  ++  L   + +   NF   F+E  G+    + 
Sbjct: 12  FGGQSLEYGKGGQAY-RCAAVADRTGHSILHTLYGQSLKHNTNF---FIEYFGMDLLMEG 67

Query: 152 GKLAGVFL----NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLR 205
           G+  GV      +G + +F A   ++ATGG+   Y          G     ++  G+PL+
Sbjct: 68  GECRGVIAMNLEDGSIHRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGLPLQ 127

Query: 206 DMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELETRDVVARAI 258
           D+EFVQFHPTG  G    LITE  RG G  L+   GERF+        +L +RDVV+RA+
Sbjct: 128 DLEFVQFHPTGIYGAGC-LITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAM 186

Query: 259 YLKMLEGKGVF---------LDARGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAH 308
            +++ EG+GV          L     E  K+R P +        G+D  K+ IPV P  H
Sbjct: 187 TVEIREGRGVGPEKDHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVH 246

Query: 309 YTMGGI---------SVDIFYRTRI-RGLYAIGEAASNGFHGANRLASNSLLECVVSG-- 356
           Y MGGI         ++D   + +I  GLYA GEAA    HG NRL +NSLL+ VV G  
Sbjct: 247 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHGGNRLGANSLLDIVVFGRA 306

Query: 357 --LEVARTILREEP-KRGANDAPYNFDELGDVDSIR----------------EIMWNHAG 397
             L +  T+    P K  A DA    D L  +D IR                + M     
Sbjct: 307 CALHIKDTLEPNTPHKPLAADA--GLDSLKFLDQIRTSQGPKHTSEIRLDMQKTMQRDVS 364

Query: 398 IVRDKSSLLEGLKKLEGVEAD-----------------------QRLKVVAKAVLTLALE 434
           + R + +L EG+K +  V+                         + L   A      AL 
Sbjct: 365 VFRMEETLQEGVKNIARVDGTYKDIGIRDRGLIWNTDLVEALELRNLLTCAVQTANAALN 424

Query: 435 REESRGSHYRRDFP 448
           R+ESRG+H R D+P
Sbjct: 425 RKESRGAHAREDYP 438


>pir||E71494 probable succinate dehydrogenase - Chlamydia trachomatis  (serotype
           D, strain UW3/Cx) >gi|3329036|gb|AAC68194.1| (AE001330)
           Succinate Dehydrogenase [Chlamydia trachomatis]
           Length = 573
           
 Score =  140 bits (350), Expect = 3e-32
 Identities = 161/564 (28%), Positives = 237/564 (41%), Gaps = 132/564 (23%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGDSIRIHVL 63
           I+GGGLAGL AA+ L ++G+ V +    K K S+S  AQ GI   L    E DS  IH  
Sbjct: 10  IIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQGGINAALNLKGENDSPYIHAY 69

Query: 64  DTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT----GN---ELEGGHSHPRVFTI 116
           DTI+ G ++ D+  V  +   +      L   G  F     GN      GG  + R    
Sbjct: 70  DTIKGGDFLADQPPVLEMCLTAPRIIHMLDRFGCPFNRDADGNLDVRRFGGTLYHRTVFC 129

Query: 117 KSETGKHVIPILEKHAR--ELGVNFVRG----FVEEIGIKNGKLAGVFLNG------ELL 164
            + TG+ ++  +++  R  E     ++     FV  I    G+  GV +        E++
Sbjct: 130 GASTGQQLMYTMDEQVRRRECQGKIIKRENHEFVRLITNTEGRACGVVVMNLFNHRLEVI 189

Query: 165 KFDAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG-RRTY 223
           + DAV++ATGG   +++ +       G   G L ++G+   + EF+Q HPT   G  +  
Sbjct: 190 QGDAVIIATGGLGVIFKMSTNSTICTGAANGRLFMQGMHYANPEFIQIHPTAISGLDKLR 249

Query: 224 LITEAVRGAGAK----------LVTGDGER-----------FVNE-------LETRDVVA 255
           LI+E+VRG G +          ++  DG R           F+ E       L +RDV A
Sbjct: 250 LISESVRGEGGRVWVPGCSSKTIIFPDGSRRPCGETGKPWYFLEEMYPAYGNLVSRDVGA 309

Query: 256 RAIYLKMLEGKG------VFLDARGIE-DFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVA 307
           RAI      G G      VFLD   +  +  ++   V  +  K  G DP K  + + P  
Sbjct: 310 RAILQVCEAGLGIDGRHEVFLDVTHLPVETLNKLEAVLDIYHKFTGEDPKKVPMRIFPAV 369

Query: 308 HYTMGGISVD------------IFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVS 355
           HY+MGG  VD              + T I G +  GE+    +HGANRL +NSLL C+ +
Sbjct: 370 HYSMGGAWVDWPASDDRDRDSRYRHMTNIPGCFNCGESDFQ-YHGANRLGANSLLACLYA 428

Query: 356 GL----EVAR-----------------------TILREEPKRGANDAPYNFDELGDVDSI 388
           GL    E AR                        I RE   R   +  +   E      I
Sbjct: 429 GLVAGDEAARFVESFGSCIYSQQDLNQALQQELEISREILSRQGGENAFALHE-----EI 483

Query: 389 REIMWNHAGIVRDKSSLLEGLKKLEGVEADQRLKVV------------------------ 424
             +M ++  + R+  +L E L KL+  E  +R+K V                        
Sbjct: 484 ARVMVSNVTVKRENKALEETLHKLK--EFRERIKKVSVHDSSRFANKTFHFVRQMEPMLE 541

Query: 425 -AKAVLTLALEREESRGSHYRRDF 447
            A A+ T AL R E RGSHY+ +F
Sbjct: 542 LALAITTGALLRNEFRGSHYKPEF 565


>pir||D70939 hypothetical protein Rv0248c - Mycobacterium tuberculosis  (strain
           H37RV) >gi|2909452|emb|CAA17340.1| (AL021929)
           hypothetical protein Rv0248c [Mycobacterium
           tuberculosis]
           Length = 646
           
 Score =  136 bits (338), Expect = 7e-31
 Identities = 159/579 (27%), Positives = 241/579 (41%), Gaps = 134/579 (23%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGIAFPLVEG---DSIRI 60
           +V ++G G AGL A I   E+G+ V+++       +++ +A+ G A  +      D+ + 
Sbjct: 10  DVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGKAHTVMAEGGCAAAMGNANPKDNWKT 69

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELE-------GGHSHPRV 113
           H  DT+R GK++N+  +      ++ +    L ++G  F   +         GGH++PR+
Sbjct: 70  HFGDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTDDGRISQRNFGGHTYPRL 129

Query: 114 FTIKSETGKHVIPIL---------EKHARELGVN------FVRGFVEEIGIKNGKLAGVF 158
             +   TG  +I  L         E HA ELG        F    + E+    G +AG F
Sbjct: 130 AHVGDRTGLELIRTLQQKVVSLQQEDHA-ELGDYEARIKVFAECTITELLKDQGAIAGAF 188

Query: 159 ----LNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQF 212
                +G  + F+A  VV+ATGG    ++ T+   E  G         G  L +MEFVQF
Sbjct: 189 GYWRESGRFIVFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINMEFVQF 248

Query: 213 HPTGFI---GRRTYLITEAVRGAGAKLVTGDGERFV------------------------ 245
           HPTG +     +  L+TE VRG G  L   +  RF+                        
Sbjct: 249 HPTGMVWPPSVKGILVTEGVRGDGGVLKNSENSRFMFDYIPPVFKGQYAETEEEADQWLK 308

Query: 246 --------NELETRDVVARAIYLKMLEGK-----GVFLDARG---IEDFKDRFPYVYSVL 289
                    +L  RD VARAI  ++  G+     GV+LD        + K R P +Y   
Sbjct: 309 DNDSARRTPDLLPRDEVARAINSEVKAGRGTPHGGVYLDIASRLTPAEIKRRLPSMYHQF 368

Query: 290 KK-EGIDPGKDLIPVTPVAHYTMGGISVDI-FYRTRIRGLYAIGEAASNGFHGANRLASN 347
           K+   +D     + V P  HY MGG+ VD       + GL+A GE A  G HG+NRL  N
Sbjct: 369 KELAEVDITTQAMEVGPTCHYVMGGVEVDADTGAATVPGLFAAGECA-GGMHGSNRLGGN 427

Query: 348 SLLECVVSGLEV---ARTILR------------------------EEPKRG-ANDAPY-- 377
           SL + +V G      A   +R                        E PK G A + PY  
Sbjct: 428 SLSDLLVFGRRAGLGAADYVRALSSRPAVSAEAIDAAAQQALSPFEGPKDGSAPENPYAL 487

Query: 378 ----------------NFDELGDVDSIREIMWNHAGIVRDKSSLLEGLKKLE---GVEAD 418
                           N DE+    ++   +W+     R  + L+EG ++      +  D
Sbjct: 488 HMDLQYVMNDLVGIIRNADEISRALTLLAELWS-----RYHNVLVEGHRQYNPGWNLSID 542

Query: 419 QR-LKVVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
            R + +V++ V   AL+R ESRG H R D P M   + R
Sbjct: 543 LRNMLLVSECVARAALQRTESRGGHTRDDHPGMDPNWRR 581


>dbj|BAB06811.1| (AP001517) succinate dehydrogenase flavoprotein [Bacillus
           halodurans]
           Length = 589
           
 Score =  135 bits (337), Expect = 9e-31
 Identities = 149/535 (27%), Positives = 232/535 (42%), Gaps = 92/535 (17%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGDSIRI 60
           +V +VGGGLAGL+A I + E GV V +      K S+S  AQ GI   +    EGDS   
Sbjct: 5   KVIVVGGGLAGLMATIKVAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWE 64

Query: 61  HVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHSHPRV 113
           H  DT+  G ++ ++  V  +   +      +   GV F             GG  H R 
Sbjct: 65  HFDDTVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTAEGLLDFRRFGGTQHHRT 124

Query: 114 FTIKSETGKHVIPILEKHAREL----------GVNFVRGFVEEIGIKNGKLAGVFLNGEL 163
               + TG+ ++  L++  R            G  F+   +++ GI  G  A      E 
Sbjct: 125 AFAGATTGQQLLYALDEQVRRHETSGLVTKYEGWEFISAIIDDEGICRGITAQNLKTSEF 184

Query: 164 LKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR- 220
             F  DAV++ATGG   ++  +     N G     L  +GV   + EF+Q HPT   G  
Sbjct: 185 QSFSADAVIMATGGPGIIFGKSTNSVINTGYAAAKLYEQGVYYANGEFIQIHPTAIPGDD 244

Query: 221 RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIY-----LKM-LE 264
           +  L++E+ RG G ++ T   G    F+ E       L  RD+  R I+     LK+ + 
Sbjct: 245 KLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDLKLGIN 304

Query: 265 GKG-VFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISVDIFY 320
           G+  V+LD   +  ++   +   +  + +K  G DP K  + + P  HY+MGG+ +D   
Sbjct: 305 GENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKVPMKIFPAVHYSMGGMWIDYDQ 364

Query: 321 RTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGL------------------EVART 362
            T I GL+A GE      HGANRL +NSLL  +  G+                   +  +
Sbjct: 365 MTNIPGLFAAGE-CDYSQHGANRLGANSLLSAIFGGMVAGPKAVEYMNGLEKSAESMPSS 423

Query: 363 ILREEPKR------------GANDAPYNFDELGD--VDSIREIMWNHAGIVRDK--SSLL 406
           +   E K+            G  +A     ELG+   D++  + +N   +  D+    L+
Sbjct: 424 LFEGELKKEQEKFDDILKMDGKENAYVLHKELGEWMTDNVTVVRYNDKLLKTDEKIQELM 483

Query: 407 EGLKKL----------EGVEADQRLKVVAK--AVLTL-ALEREESRGSHYRRDFP 448
           E  K +          +G    ++L  + K   V+TL A  R ESRG+HY+ DFP
Sbjct: 484 ERYKNIDINDTAKWSNQGASFTRQLDGMLKLARVITLGAYNRNESRGAHYKPDFP 538


>emb|CAA69872.1| (Y08563) succinate dehydrogenase subunit A [Paenibacillus macerans]
           Length = 581
           
 Score =  129 bits (321), Expect = 7e-29
 Identities = 145/539 (26%), Positives = 229/539 (41%), Gaps = 92/539 (17%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGD 56
           M    V +VGGGLAGL+A I   E GV V +      K S+S  AQ GI   +    EGD
Sbjct: 1   MAKQSVIVVGGGLAGLMATIKSAEAGVPVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
           S   H  DT+  G ++ ++  V  +   +      +   GV F             GG  
Sbjct: 61  SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120

Query: 110 HPRVFTIKSETGKHVIPILEKHARELGV----------NFVRGFVEEIGIKNGKLAGVFL 159
           H R     + TG+ ++  L++  R               F+   +++ G+  G  A    
Sbjct: 121 HHRTAFAGATTGQQLLYALDEQVRRHEAAGLVTKYENWEFLSVVLDDDGVCRGITAQNLR 180

Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
           + E++ F  DAV++ATGG   ++  T     N G     +  +GV   + EF+Q HPT  
Sbjct: 181 SMEIVTFASDAVILATGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAI 240

Query: 218 IGR-RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK 266
            G  +  L++E+ RG G ++ T   G    F+ E       L  RD+  R I+   ++ K
Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDQK 300

Query: 267 -------GVFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
                   V+LD   +  ++   +   +  + +K  G DP K  + + P  HY+MGG+ V
Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360

Query: 317 DIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGL-------EVARTILR---- 365
           D    T I GL+A GE     +HGANRL +NSL+  +  G+       E  R + +    
Sbjct: 361 DYNQMTNIPGLFAAGECEYQ-YHGANRLGANSLVSAIYGGMVAGPKAVEYIRGLKKSADD 419

Query: 366 ------------EEPK-------RGANDAPYNFDELGD--VDSIREIMWNH--AGIVRDK 402
                       +E K        G+ +A     ELG+   D++  + +N      +   
Sbjct: 420 IRPDVFDRYRKAQEDKFEGLLNMNGSENAYVLHKELGEWMTDNMTVVRYNDRLEATINKI 479

Query: 403 SSLLEGLKKLEGVEADQ-------------RLKVVAKAVLTLALEREESRGSHYRRDFP 448
             L E  KK+   +  +              +  +A+A+   AL R ESRG+HY+ DFP
Sbjct: 480 KELKERYKKININDTSRWNNAGAAFTRQLWNMLELAEAMTLGALLRNESRGAHYKPDFP 538


>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
           Flavocytochrome C Fumarate Reductase Of Shewanella
           Putrefaciens Strain Mr-1 >gi|6573310|pdb|1D4C|D Chain D,
           Crystal Structure Of The Uncomplexed Form Of The
           Flavocytochrome C Fumarate Reductase Of Shewanella
           Putrefaciens Strain Mr-1 >gi|6573308|pdb|1D4C|B Chain B,
           Crystal Structure Of The Uncomplexed Form Of The
           Flavocytochrome C Fumarate Reductase Of Shewanella
           Putrefaciens Strain Mr-1 >gi|6573309|pdb|1D4C|C Chain C,
           Crystal Structure Of The Uncomplexed Form Of The
           Flavocytochrome C Fumarate Reductase Of Shewanella
           Putrefaciens Strain Mr-1
           Length = 572
           
 Score =  129 bits (320), Expect = 9e-29
 Identities = 128/436 (29%), Positives = 194/436 (44%), Gaps = 89/436 (20%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGI-------AFPLVEGD 56
           +V I+G G AGL AA+S  + G  V ++  +     N+ LA  G+          L   D
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 187

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF-- 114
             +I + DT++ G+ IND E+V  + + S+++  +L S G   T     GG S  R    
Sbjct: 188 KKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRP 247

Query: 115 TIKSETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFLNGE-----LLKFD 167
           T  +  G HV  +L  +A + G  +      V  +   +GK+ GV + GE     ++K D
Sbjct: 248 TGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKAD 307

Query: 168 AVVVATGGFSG----LYRFTAGVK----------ENIGLLIGDLALK-GVPLRDMEFVQF 212
           AVV+A GGF+     + ++   +K             GL   D+AL+ G   RD+E++Q 
Sbjct: 308 AVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGL---DVALQAGAATRDLEYIQA 364

Query: 213 HPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDA 272
           HPT +      +ITEAVRG GA +V  +G RF+NE+ TRD  + AI  +  E   +  D 
Sbjct: 365 HPT-YSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDD 423

Query: 273 RGIEDFKDRFPYVYSVLKKEG---------------------------IDPGKD------ 299
              +  K    YV+  + KEG                           +  GKD      
Sbjct: 424 SIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERP 483

Query: 300 ------------LIPVTPVAHYTMGGISVDIFYRTR-------IRGLYAIGEAASNGFHG 340
                        + + P  H+TMGG+ +D     +       I GLYA GE  + G HG
Sbjct: 484 DLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGE-VTGGVHG 542

Query: 341 ANRLASNSLLECVVSG 356
           ANRL  N++ + V  G
Sbjct: 543 ANRLGGNAISDIVTYG 558


>gb|AAF49990.1| (AE003543) CG5718 gene product [Drosophila melanogaster]
           Length = 525
           
 Score =  128 bits (319), Expect = 1e-28
 Identities = 123/382 (32%), Positives = 168/382 (43%), Gaps = 76/382 (19%)

Query: 139 FVRGFVEEIGIKNGKLAGVFLNGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGD 196
           FV   +   G   G LA    +G   +F A   VVA GG   +Y  T       G     
Sbjct: 81  FVLDLIMSQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVYFSTTAGHTCTGDGNAW 140

Query: 197 LALKGVPLRDMEFVQFHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVN-------ELE 249
           ++ + +PL DMEFVQFHPTG  G    LITE VRG G   +   GERF+        +L 
Sbjct: 141 VSRQELPLMDMEFVQFHPTGIYGAGC-LITEGVRGEGGFFLNCKGERFMERYAPKAKDLA 199

Query: 250 TRDVVARAIYLKMLEGKG-------VFLDARGIED--FKDRFPYVYSVLKKEG-IDPGKD 299
           +RDVVARA+ +++L G G       V L    I+    K R P +    +    +D  K+
Sbjct: 200 SRDVVARAMTMEVLAGNGCGPLKDHVHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKE 259

Query: 300 LIPVTPVAHYTMGGISVDIFYRTRI------------RGLYAIGEAASNGFHGANRLASN 347
            +PV P  HY MGGI  D  Y+ R+            +GLY+ GE +    HGANRL +N
Sbjct: 260 PVPVLPTVHYNMGGIPTD--YKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGAN 317

Query: 348 SLLECVVSGLEVARTILR-----EEPKRGANDAPY----NFDELGDVD----------SI 388
           SLL+ ++ G   A  I       ++P +  + A      NF  L   D           +
Sbjct: 318 SLLDLIIFGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLRMEL 377

Query: 389 REIMWNHAGIVRDKSSLLEGLKKLEG---------------------VEADQRLKVVAKA 427
           +  M  HA + R+   L EGL K+                       VE  +   ++A A
Sbjct: 378 QRTMTKHAAVFREGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNLVETLELQNMLANA 437

Query: 428 V--LTLALEREESRGSHYRRDF 447
           V  +T    R+ESRGSH R DF
Sbjct: 438 VHIITAMENRKESRGSHAREDF 459


>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
           Flavocytochrome C Fumarate Reductase Of Shewanella
           Putrefaciens Strain Mr-1 >gi|6573312|pdb|1D4E|A Chain A,
           Crystal Structure Of The Flavocytochrome C Fumarate
           Reductase Of Shewanella Putrefaciens Strain Mr-1
           Complexed With Fumarate
           Length = 572
           
 Score =  127 bits (317), Expect = 2e-28
 Identities = 127/436 (29%), Positives = 194/436 (44%), Gaps = 89/436 (20%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSIIGPKS-KDSNSYLAQAGI-------AFPLVEGD 56
           +V I+G G AGL AA+S  + G  V ++  +     N+ LA  G+          L   D
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIED 187

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF-- 114
             +I + DT++ G+ IND E+V  + + S+++  +L S G   T     GG S  R    
Sbjct: 188 KKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRP 247

Query: 115 TIKSETGKHVIPILEKHARELG--VNFVRGFVEEIGIKNGKLAGVFLNGE-----LLKFD 167
           T  +  G HV  +L  +A + G  +      V  +   +GK+ GV + GE     ++K D
Sbjct: 248 TGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKAD 307

Query: 168 AVVVATGGFSG----LYRFTAGVK----------ENIGLLIGDLALK-GVPLRDMEFVQF 212
           AVV+A GGF+     + ++   +K             GL   D+AL+ G   RD++++Q 
Sbjct: 308 AVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGL---DVALQAGAATRDLQYIQA 364

Query: 213 HPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFLDA 272
           HPT +      +ITEAVRG GA +V  +G RF+NE+ TRD  + AI  +  E   +  D 
Sbjct: 365 HPT-YSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDD 423

Query: 273 RGIEDFKDRFPYVYSVLKKEG---------------------------IDPGKD------ 299
              +  K    YV+  + KEG                           +  GKD      
Sbjct: 424 SIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERP 483

Query: 300 ------------LIPVTPVAHYTMGGISVDIFYRTR-------IRGLYAIGEAASNGFHG 340
                        + + P  H+TMGG+ +D     +       I GLYA GE  + G HG
Sbjct: 484 DLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTAKPITGLYAAGE-VTGGVHG 542

Query: 341 ANRLASNSLLECVVSG 356
           ANRL  N++ + V  G
Sbjct: 543 ANRLGGNAISDIVTYG 558


>sp|Q02469|FRDA_SHEFR FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT PRECURSOR (FLAVOCYTOCHROME
           C) >gi|321662|pir||B44238 fumarate reductase (EC
           1.3.99.1) flavocytochrome precursor - Shewanella
           putrefaciens >gi|152719|gb|AAA70385.1| (L04283)
           flavocytochrome c precursor [Shewanella frigidimarina]
           Length = 596
           
 Score =  123 bits (307), Expect = 3e-27
 Identities = 128/438 (29%), Positives = 197/438 (44%), Gaps = 92/438 (21%)

Query: 4   MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
           ++V +VG G AG  AAIS  + G  V +I  +     N+ LA  G+     +        
Sbjct: 152 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 211

Query: 56  DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
           DS  +   DT++ G+ IND  +V  + S S ++  ++ + G   T   + GG S  R   
Sbjct: 212 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 271

Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
            T  +  G HV+ +L  +A +  ++     RG +E +    G + G+ + G       +K
Sbjct: 272 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 330

Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
            DAV++ATGGF+      A +  ++              GL + + A  G  L+DM+++Q
Sbjct: 331 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 388

Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
            HPT  + +   ++TEAVRG GA LV  +G+RFVNE+ TRD  + AI  +   GK  +L 
Sbjct: 389 AHPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 445

Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
                R      D++      P   S++   K EGID                 GKD   
Sbjct: 446 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 505

Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
                           I VTP  H+TMGG+ +D         +  I GLY  GE  + G 
Sbjct: 506 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 564

Query: 339 HGANRLASNSLLECVVSG 356
           HGANRL  N++ + +  G
Sbjct: 565 HGANRLGGNAISDIITFG 582


>emb|CAB38558.1| (AJ132010) fumarate reductase flavocytochrome c3 [Shewanella
           frigidimarina]
           Length = 561
           
 Score =  123 bits (307), Expect = 3e-27
 Identities = 128/438 (29%), Positives = 197/438 (44%), Gaps = 92/438 (21%)

Query: 4   MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
           ++V +VG G AG  AAIS  + G  V +I  +     N+ LA  G+     +        
Sbjct: 117 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 176

Query: 56  DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
           DS  +   DT++ G+ IND  +V  + S S ++  ++ + G   T   + GG S  R   
Sbjct: 177 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 236

Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
            T  +  G HV+ +L  +A +  ++     RG +E +    G + G+ + G       +K
Sbjct: 237 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 295

Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
            DAV++ATGGF+      A +  ++              GL + + A  G  L+DM+++Q
Sbjct: 296 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 353

Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
            HPT  + +   ++TEAVRG GA LV  +G+RFVNE+ TRD  + AI  +   GK  +L 
Sbjct: 354 AHPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 410

Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
                R      D++      P   S++   K EGID                 GKD   
Sbjct: 411 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 470

Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
                           I VTP  H+TMGG+ +D         +  I GLY  GE  + G 
Sbjct: 471 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 529

Query: 339 HGANRLASNSLLECVVSG 356
           HGANRL  N++ + +  G
Sbjct: 530 HGANRLGGNAISDIITFG 547


>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
           Length = 571
           
 Score =  123 bits (307), Expect = 3e-27
 Identities = 128/438 (29%), Positives = 197/438 (44%), Gaps = 92/438 (21%)

Query: 4   MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
           ++V +VG G AG  AAIS  + G  V +I  +     N+ LA  G+     +        
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 186

Query: 56  DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
           DS  +   DT++ G+ IND  +V  + S S ++  ++ + G   T   + GG S  R   
Sbjct: 187 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 246

Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
            T  +  G HV+ +L  +A +  ++     RG +E +    G + G+ + G       +K
Sbjct: 247 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 305

Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
            DAV++ATGGF+      A +  ++              GL + + A  G  L+DM+++Q
Sbjct: 306 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 363

Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
            HPT  + +   ++TEAVRG GA LV  +G+RFVNE+ TRD  + AI  +   GK  +L 
Sbjct: 364 AHPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 420

Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
                R      D++      P   S++   K EGID                 GKD   
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 480

Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
                           I VTP  H+TMGG+ +D         +  I GLY  GE  + G 
Sbjct: 481 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 539

Query: 339 HGANRLASNSLLECVVSG 356
           HGANRL  N++ + +  G
Sbjct: 540 HGANRLGGNAISDIITFG 557


>pir||T16413 hypothetical protein F48E8.3 - Caenorhabditis elegans
           >gi|746486|gb|AAC46539.1| (U23514) similar to
           flavoprotein subunit of fumarate reductase and other
           oxidoreductases [Caenorhabditis elegans]
           Length = 474
           
 Score =  122 bits (303), Expect = 9e-27
 Identities = 137/451 (30%), Positives = 191/451 (41%), Gaps = 105/451 (23%)

Query: 6   VGIVGGGLAGLVAAISLVEKGVDVSII-GPKSKDSNSYLAQAGIAFPLVEG-------DS 57
           V +VGGGLAGL A++ ++  G  V ++ G  +   NS  A +GI     E        DS
Sbjct: 11  VVVVGGGLAGLSASLDIINGGGRVILVEGEGNTGGNSAKASSGINGAGTETQEKLGIKDS 70

Query: 58  IRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIK 117
             + V DT+ AG   ND+++V  + + S +A  FL    V  T   L GGHS PR   I 
Sbjct: 71  PELLVKDTLSAGDSENDKKLVEILAANSADAVEFLRGVEVDLTDVNLCGGHSVPRTHWIP 130

Query: 118 SETGKHVIP------------ILEKHARELGVNFVRGFVEEIGI--KNGKLAGVFL---- 159
           S      IP            + EK +       +    + +GI  +NGK++G+ +    
Sbjct: 131 SPKEGRPIPAGFEIMKRLRTRLNEKQSENPEAFKLLTQTKMVGILRENGKVSGIEIVTSA 190

Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLR--DMEFVQFHPT 215
           +GE  K   DAV++ATGGFS        +KE    + G     G   +  D  +      
Sbjct: 191 SGEKSKIIGDAVILATGGFSADETL---LKEFGAEIFGFPTTNGAFAKGDDSSYSVCRSK 247

Query: 216 GFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLE----------- 264
             I R   L  EA+RG GA L+   G+RF NEL  RD +   I L++ E           
Sbjct: 248 RSISRNKVLAAEAIRGKGALLINSKGQRFGNELGRRDYLTGKI-LELAEPIEESFQGGSA 306

Query: 265 GKG---VFLDARGIEDFKDRFPYVYSVLKK--------------EGIDP----------- 296
           G+    + ++   +E F       YS++KK               GID            
Sbjct: 307 GRNAAIMIMNEANVEAFGRPAFNFYSIVKKFFAKYENSAELAKALGIDESAIKTTLEEYQ 366

Query: 297 -----------GKDLIPVT--------------PVAHYTMGGISVDIFYRT------RIR 325
                      GK + PV+              P  HYTMGG+ +D   R        I 
Sbjct: 367 KSFDGKSEDPFGKKVFPVSAISPTEPIYAAIVVPAIHYTMGGLKIDEATRVIDEHGKPIV 426

Query: 326 GLYAIGEAASNGFHGANRLASNSLLECVVSG 356
           GL+A GE  + G HG+NRLA NSLLECVV G
Sbjct: 427 GLFAAGE-VTGGVHGSNRLAGNSLLECVVFG 456


>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
           365 Mutated To Alanine
           Length = 571
           
 Score =  120 bits (297), Expect = 4e-26
 Identities = 127/438 (28%), Positives = 196/438 (43%), Gaps = 92/438 (21%)

Query: 4   MEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG------- 55
           ++V +VG G AG  AAIS  + G  V +I  +     N+ LA  G+     +        
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 186

Query: 56  DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVF- 114
           DS  +   DT++ G+ IND  +V  + S S ++  ++ + G   T   + GG S  R   
Sbjct: 187 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHR 246

Query: 115 -TIKSETGKHVIPILEKHARELGVNF---VRGFVEEIGIKNGKLAGVFLNGEL-----LK 165
            T  +  G HV+ +L  +A +  ++     RG +E +    G + G+ + G       +K
Sbjct: 247 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG-IEVLKDDKGTVKGILVKGMYKGYYWVK 305

Query: 166 FDAVVVATGGFSGLYRFTAGVKENI--------------GLLIGDLALKGVPLRDMEFVQ 211
            DAV++ATGGF+      A +  ++              GL + + A  G  L+DM+++Q
Sbjct: 306 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENA--GGALKDMQYIQ 363

Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL- 270
             PT  + +   ++TEAVRG GA LV  +G+RFVNE+ TRD  + AI  +   GK  +L 
Sbjct: 364 AAPTLSV-KGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQ--TGKSAYLI 420

Query: 271 ---DARGIEDFKDRF------PYVYSVL---KKEGID----------------PGKD--- 299
                R      D++      P   S++   K EGID                 GKD   
Sbjct: 421 FDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDF 480

Query: 300 ---------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGF 338
                           I VTP  H+TMGG+ +D         +  I GLY  GE  + G 
Sbjct: 481 ERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGE-VTGGV 539

Query: 339 HGANRLASNSLLECVVSG 356
           HGANRL  N++ + +  G
Sbjct: 540 HGANRLGGNAISDIITFG 557


>pir||A27763 succinate dehydrogenase (EC 1.3.99.1) flavoprotein - Bacillus
           subtilis
           Length = 586
           
 Score =  118 bits (292), Expect = 2e-25
 Identities = 143/545 (26%), Positives = 223/545 (40%), Gaps = 104/545 (19%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGD 56
           M    + +VGGGLAGL+A I   E G+ V +      K S+S  AQ GI   +    EGD
Sbjct: 1   MSQSSIIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGD 60

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
           S   H  DT+  G ++ ++  V  +   +      L   GV F             GG  
Sbjct: 61  SPWEHFDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQ 120

Query: 110 HPRVFTIKSETGKHVIPILEKHAREL----------GVNFVRGFVEEIGIKNGKLAGVFL 159
           H R     + TG+ ++  L++  R            G  F+   +++     G +A    
Sbjct: 121 HHRTAYAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLT 180

Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
           N ++  F  DAV++ATGG   ++  +     N G     +  +G    + EF+Q HPT  
Sbjct: 181 NMQIESFRSDAVIMATGGPGIIFGKSTNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI 240

Query: 218 IGR-RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK 266
            G  +  L++E+ RG G ++ T   G    F+ E       L  RD+  R I+   +  K
Sbjct: 241 PGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVNQK 300

Query: 267 -------GVFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
                   V+LD   +  ++   +   +  + +K  G DP K  + + P  HY+MGG+ V
Sbjct: 301 LGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKLPMKIFPAVHYSMGGLWV 360

Query: 317 DIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECV-------------VSGLEVART- 362
           D    T I GL+A GE      HG NRL   SLL  +             V+GLE +   
Sbjct: 361 DYDQMTNIPGLFAAGE-CDYSMHGGNRLERTSLLSAIYGGMVAGPNAVKYVNGLESSAED 419

Query: 363 ---------ILREEPK-------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLL 406
                    + +EE K        G  +A     ELG      E M  +  +VR    LL
Sbjct: 420 MSSSLFDAHVKKEEEKWADIMIMDGTENAYVLHKELG------EWMTANVTVVRHNDKLL 473

Query: 407 EGLKKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHY 443
           +   K+ E +E  +++ +                      +A+ +   A  R ESRG+HY
Sbjct: 474 KTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNMLQLARVITLGAYNRNESRGAHY 533

Query: 444 RRDFP 448
           + D+P
Sbjct: 534 KPDYP 538


>gb|AAG12518.1|AC011017_7 (AC011017) L3184.7 [Leishmania major]
           Length = 1147
           
 Score =  115 bits (285), Expect = 1e-24
 Identities = 147/490 (30%), Positives = 204/490 (41%), Gaps = 131/490 (26%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVSIIGPKSK-DSNSYLAQAGI-----AFPLVEG--DSIR 59
           IVGGGLAG  AAI     G  V ++  + K   NS  A +GI          +G  D  +
Sbjct: 392 IVGGGLAGCSAAIEAANCGAQVILLEKEPKLGGNSAKATSGINAWGTRAQAKQGIMDGGK 451

Query: 60  IHVLDTIRAGKYINDEEVVWNVIS-KSTEAYSFLVSHGVTFTGNELEGGHSHPRV----- 113
               DT R+GK  N +  +   +S KS++A  +L   GV  T     GG S  R      
Sbjct: 452 FFERDTHRSGKGGNCDPCLVKTLSVKSSDAVKWLSELGVPLTVLSQLGGASRKRCHRAPD 511

Query: 114 ----------FTIKSETGKHVIPILEKHAREL-GVNFVR----GFVEEIGIKNGKLAGVF 158
                     FTI      H++  L +H   + G+          V   G+    + GV 
Sbjct: 512 KSDGTPVPVGFTIMKTLENHIVNNLSRHVTVMTGITVTALESTSHVRPDGVLVKHVTGVR 571

Query: 159 L-----NGELLKFDAVVVATGGFSGLYRFTAGVKENIGLL-----------IGD---LAL 199
           L        +L  DAV++ATGGFS  +   + +++    L            GD   +A 
Sbjct: 572 LIQASGQSMVLNADAVILATGGFSNDHTPNSLLQQYAPQLSSFPTTNGVWATGDGVKMAS 631

Query: 200 K-GVPLRDMEFVQFHPTGFI------GRRTYLITEAVRGAGAKLVTGDGERFVNELETRD 252
           K GV L DM+ VQ HPTG I       R  YL  EA+RG+G  L+  +GERFVNEL+ R 
Sbjct: 632 KLGVALVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVNELDLRS 691

Query: 253 VVARAIYLK----------------------MLEGK---GVFLDARGIEDFKDRFPYV-- 285
           VV++AI  +                       L GK   G + +  G+    D    +  
Sbjct: 692 VVSQAIIAQDNVYPGSGGSKFAYCVLNETAAKLFGKNFLGFYWNRLGLFQKSDSVAGLAK 751

Query: 286 ---------------YSVLKKEGIDP----GKDLIP-------------VTPVAHYTMGG 313
                          Y  L  + ++P    GK++ P             +TP  HYTMGG
Sbjct: 752 LIGCPEANVMATLKQYEELSSKKLNPCPLTGKNVFPCVLGTQGPYYVALITPSIHYTMGG 811

Query: 314 --ISVDIFYRTR-----------IRGLYAIGEAASNGFHGANRLASNSLLECVVSGL--- 357
             IS     +T+           I GL+  GE  ++G HG NRL  NSLLECVV G    
Sbjct: 812 CLISPSAEMQTKDNSGVTPVRRPILGLFGAGE-VTDGVHGGNRLGGNSLLECVVFGKIAG 870

Query: 358 EVARTILREE 367
           + A TIL+++
Sbjct: 871 DRAATILQKK 880


>sp|P08065|DHSA_BACSU SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
           >gi|143526|gb|AAA22746.1| (M13470) succinate
           dehydrogenase flavoprotein subunit [Bacillus subtilis]
           >gi|1770052|emb|CAA99547.1| (Z75208) flavoprotein
           subunit of succinate dehydrogenase complex [Bacillus
           subtilis] >gi|2635309|emb|CAB14804.1| (Z99118) succinate
           dehydrogenase (flavoprotein subunit) [Bacillus subtilis]
           Length = 586
           
 Score =  114 bits (283), Expect = 2e-24
 Identities = 141/545 (25%), Positives = 222/545 (39%), Gaps = 104/545 (19%)

Query: 1   MIDMEVGIVGGGLAGLVAAISLVEKGVDVSIIG-PKSKDSNSYLAQAGIAFPLV---EGD 56
           M    + +VGGGLAGL+A I   E G+ V +      K S+S  AQ GI   +    EGD
Sbjct: 1   MSQSSIIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGD 60

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGN-------ELEGGHS 109
           S   H  DT+  G ++ ++  +  +   +      L    V F             GG  
Sbjct: 61  SPWEHFDDTVYGGDFLANQPPLKAMCEAAPSIIHLLDRMAVMFNRTPEGLLDFRRFGGTQ 120

Query: 110 HPRVFTIKSETGKHVIPILEKHAREL----------GVNFVRGFVEEIGIKNGKLAGVFL 159
           H R     + TG+ ++  L++  R            G  F+   +++     G +A    
Sbjct: 121 HHRTAYAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLT 180

Query: 160 NGELLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGF 217
           N ++  F  DAV++ATGG   ++  +     N G     +  +G    + EF+Q HPT  
Sbjct: 181 NMQIESFRSDAVIMATGGPGIIFGKSTNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI 240

Query: 218 IGR-RTYLITEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK 266
            G  +  L++E+ RG G ++ T   G    F+ E       L  RD+  R I+   +  K
Sbjct: 241 PGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVNQK 300

Query: 267 -------GVFLDA--RGIEDFKDRFPYVYSVLKK-EGIDPGKDLIPVTPVAHYTMGGISV 316
                   V+LD   +  ++   +   +  + +K  G DP K  + + P  HY+MGG+ V
Sbjct: 301 LGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKLPMKIFPAVHYSMGGLWV 360

Query: 317 DIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECV-------------VSGLEVART- 362
           D    T I GL+A GE      HG NRL   SLL  +             V+GLE +   
Sbjct: 361 DYDQMTNIPGLFAAGE-CDYSMHGGNRLERTSLLSAIYGGMVAGPNAVKYVNGLESSAED 419

Query: 363 ---------ILREEPK-------RGANDAPYNFDELGDVDSIREIMWNHAGIVRDKSSLL 406
                    + +EE K        G  +A     ELG      E M  +  +VR    LL
Sbjct: 420 MSSSLFDAHVKKEEEKWADIMIMDGTENAYVLHKELG------EWMTANVTVVRHNDKLL 473

Query: 407 EGLKKL-EGVEADQRLKV----------------------VAKAVLTLALEREESRGSHY 443
           +   K+ E +E  +++ +                      +A+ +   A  R ESRG+HY
Sbjct: 474 KTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNMLQLARVITLGAYNRNESRGAHY 533

Query: 444 RRDFP 448
           + D+P
Sbjct: 534 KPDYP 538


>gi|6320788 Yel047cp [Saccharomyces cerevisiae] >gi|418423|sp|P32614|YEF7_YEAST
           HYPOTHETICAL 50.8 KD PROTEIN IN PAU2-GLY1 INTERGENIC
           REGION >gi|320733|pir||S30830 fumarate reductase (EC
           1.3.99.1) - yeast (Saccharomyces cerevisiae)
           >gi|603632|gb|AAB64995.1| (U18779) Yel047cp
           [Saccharomyces cerevisiae]
           Length = 470
           
 Score =  107 bits (264), Expect = 3e-22
 Identities = 135/465 (29%), Positives = 195/465 (41%), Gaps = 106/465 (22%)

Query: 6   VGIVGGGLAGLVAAISLVEK-GVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG-------D 56
           V ++G GLAGL AA  LV K  + V+I+   S    NS  A +GI     E        D
Sbjct: 6   VVVIGTGLAGLAAANELVNKYNIPVTILEKASSIGGNSIKASSGINGACTETQRHFHIED 65

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSH-GVTFTGNELEGGHSHPRV-- 113
           S R+   DTI++ K    +E++  + + S  A  +L +   +        GGHS  R   
Sbjct: 66  SPRLFEDDTIKSAKGKGVQELMAKLANDSPLAIEWLKNEFDLKLDLLAQLGGHSVARTHR 125

Query: 114 --------FTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL---NGE 162
                   F I S    ++  + E     + +N +   V +I  K+G ++ V     NGE
Sbjct: 126 SSGKLPPGFEIVSALSNNLKKLAETKPELVKIN-LDSKVVDIHEKDGSISAVVYEDKNGE 184

Query: 163 --LLKFDAVVVATGGFS---GLYRFTAGVKENIGLLIGD---------LALKGVPLRDME 208
             ++  + VV  +GGF     + +  A    N+    G          L   G  L DM+
Sbjct: 185 KHMVSANDVVFCSGGFGFSKEMLKEYAPELVNLPTTNGQQTTGDGQRLLQKLGADLIDMD 244

Query: 209 FVQFHPTGFIGRRT------YLITEAVRGAGAKLVTG-DGERFVNELETRDVVARAIY-- 259
            +Q HPTGFI          +L  E++RG G  L+    G RFVNEL TRDVV  AI   
Sbjct: 245 QIQVHPTGFIDPNDRSSSWKFLAAESLRGLGGILLNPITGRRFVNELTTRDVVTAAIQKV 304

Query: 260 -------LKMLEGKGVFLDARGIEDF-----------------KDRFPYVYSVLKKE--- 292
                    ++ G+ ++ D +   DF                 +   P   + L +E   
Sbjct: 305 CPQEDNRALLVMGEKMYTDLKNNLDFYMFKKLVQKLTLSQVVSEYNLPITVAQLCEELQT 364

Query: 293 ------GIDP----------GKDLIP--------VTPVAHYTMGGISVDIFYRT------ 322
                   DP          G D+ P        VTPV H+TMGG  +++  +       
Sbjct: 365 YSSFTTKADPLGRTVILNEFGSDVTPETVVFIGEVTPVVHFTMGGARINVKAQVIGKNDE 424

Query: 323 -RIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE 366
             ++GLYA GE  S G HGANRL  +SLLECVV G   A +I  +
Sbjct: 425 RLLKGLYAAGE-VSGGVHGANRLGGSSLLECVVFGRTAAESIAND 468


>pir||JC5123 fumarate reductase (NADH) (EC 1.3.1.6) - yeast (Saccharomyces
           cerevisiae)
           Length = 470
           
 Score =  105 bits (260), Expect = 1e-21
 Identities = 135/465 (29%), Positives = 195/465 (41%), Gaps = 106/465 (22%)

Query: 6   VGIVGGGLAGLVAAISLVEK-GVDVSIIGPKSK-DSNSYLAQAGIAFPLVEG-------D 56
           V ++G GLAGL AA  LV K  + V+I    S    NS  A +GI     E        D
Sbjct: 6   VVVIGTGLAGLAAANELVNKYNIPVTIRQKASSIGGNSIKASSGINGACTETQRHFHIED 65

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSH-GVTFTGNELEGGHSHPRV-- 113
           S R+   DTI++ K    +E++  + + S  A  +L +   +        GGHS  R   
Sbjct: 66  SPRLFEDDTIKSAKGKGVQELMAKLANDSPLAIEWLKNEFDLKLDLLAQLGGHSVARTHR 125

Query: 114 --------FTIKSETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFL---NGE 162
                   F I S    ++  + E     + +N +   V +I  K+G ++ V     NGE
Sbjct: 126 SSGKLPPGFEIVSALSNNLKKLAETKPELVKIN-LDSKVVDIHEKDGSISAVVYEDKNGE 184

Query: 163 --LLKFDAVVVATGGFS---GLYRFTAGVKENIGLLIGD---------LALKGVPLRDME 208
             ++  + VV  +GGF     + +  A    N+    G          L   G  L DM+
Sbjct: 185 KHMVSANDVVFCSGGFGFSKEMLKEYAPELVNLPTTNGQQTTGDGQRLLQKLGADLIDMD 244

Query: 209 FVQFHPTGFIGRRT------YLITEAVRGAGAKLVTG-DGERFVNELETRDVVARAIY-- 259
            +Q HPTGFI          +L  E++RG G  L+    G+RFVNEL TRDVV  AI   
Sbjct: 245 QIQVHPTGFIDPNDRSSSWKFLAAESLRGLGGILLNPITGKRFVNELTTRDVVTAAIQKV 304

Query: 260 -------LKMLEGKGVFLDARGIEDF-----------------KDRFPYVYSVLKKE--- 292
                    ++ G+ ++ D +   DF                 +   P   + L +E   
Sbjct: 305 CPQEDNRALLVMGEKMYTDLKNNLDFYMFKKLVQKLTLSQVVSEYNLPITVAQLCEELQT 364

Query: 293 ------GIDP----------GKDLIP--------VTPVAHYTMGGISVDIFYRT------ 322
                   DP          G D+ P        VTPV H+TMGG  +++  +       
Sbjct: 365 YSSFTTKADPLGRTVILNEFGSDVTPETVVFIGEVTPVVHFTMGGARINVKAQVIGKNDE 424

Query: 323 -RIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILRE 366
             ++GLYA GE  S G HGANRL  +SLLECVV G   A +I  +
Sbjct: 425 RLLKGLYAAGE-VSGGVHGANRLGGSSLLECVVFGRTAAESIAND 468


>emb|CAB63172.1| (AL133469) putative reductase flavoprotein subunit [Streptomyces
           coelicolor A3(2)]
           Length = 649
           
 Score =  104 bits (258), Expect = 2e-21
 Identities = 134/556 (24%), Positives = 228/556 (40%), Gaps = 122/556 (21%)

Query: 8   IVGGGLAGLVAAISLVEKGVDVS--IIGPKSKDSNSYLAQAGIAFPLV---EGDSIRIHV 62
           +VG GLAG  A  +L E+G  V         + ++S  AQ GI        +GDSI    
Sbjct: 49  VVGTGLAGGSAGATLAEQGYHVVQFCYQDSPRRAHSIAAQGGINAAKNYRNDGDSIHRLF 108

Query: 63  LDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFT---GNELE----GGHSHPRVFT 115
            DT++ G + + E  V  +   S E     V+ GV F    G  L+    GG    R F 
Sbjct: 109 YDTVKGGDFRSRESNVHRLAQISVEIIDQCVAQGVPFAREYGGLLDTRSFGGVQVSRTFY 168

Query: 116 IKSETGKHVI-------------PILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGE 162
            + +TG+ ++               +E HAR   ++ +   V+  G   G +A   + G+
Sbjct: 169 ARGQTGQQLLLGAYQALSRQIAAGTIEMHARTEMLDLI--VVD--GRARGIVARDLVTGK 224

Query: 163 LLKF--DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPT----- 215
           +  +  DAVV+A+GG+  ++  +     +    +     +G    +  F Q HPT     
Sbjct: 225 IDTYYADAVVLASGGYGNVFYLSTNAMNSNATAVWRAHRRGAYFANPCFTQIHPTCIPRT 284

Query: 216 GFIGRRTYLITEAVRGAG-------------AKLVTGDGERFVNE--------LETRDVV 254
           G    +  L++E++R  G             A  +  D   +  E        L  RD+ 
Sbjct: 285 GDHQSKLTLMSESLRNDGRIWVPKAKGDDRPANKIPEDERDYYLERIYPSFGNLVPRDIA 344

Query: 255 ARAIYLKMLEGKGVFLDARGIE-DFKD------------RFPYVYSVLKK-EGIDPGKDL 300
           +RA      EG+GV    +G+  DF D            ++  ++ + ++    DP +  
Sbjct: 345 SRAAKNVCDEGRGVGPGGQGVYLDFADAIKRMGRKAVEAKYGNLFDMYQRITDEDPYRVP 404

Query: 301 IPVTPVAHYTMGGISVDIFYRTRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVA 360
           + + P  HYTMGG+ VD   +T + GL+AIGEA  +  HGANRL +++L++ +  G  V 
Sbjct: 405 MRIYPAVHYTMGGLWVDYDLQTTVPGLFAIGEANFSD-HGANRLGASALMQGLADGYFVL 463

Query: 361 RTILREEPKRGA------NDAPYNFDELGDVD--------------------SIREIMWN 394
              + +   R        +D P   + L + +                     + E+MW 
Sbjct: 464 PATINDYLARNPLGDDVDDDHPVVQEVLAETEDRLNLLLSVDGDRTPDSFHRELGELMWE 523

Query: 395 HAGIVRDKSSLLEGLKKLEGVEAD--QRLKV----------------------VAKAVLT 430
             G+ R  S L + L+++  +  +  +R+KV                      +A+ +  
Sbjct: 524 FCGMARTDSGLRKALERIPQIREEFWRRIKVPGTGEEFNQSLEKANRIVDYLELAELMCL 583

Query: 431 LALEREESRGSHYRRD 446
            AL R ES G H+R +
Sbjct: 584 DALHRAESCGGHFREE 599


>pir||T43862 FAD flavoprotein oxidase [imported] - Clostridium perfringens
           >gi|4240000|dbj|BAA74785.1| (AB017186) FAD flavoprotein
           oxidase [Clostridium perfringens]
           Length = 541
           
 Score =  104 bits (256), Expect = 3e-21
 Identities = 136/520 (26%), Positives = 217/520 (41%), Gaps = 73/520 (14%)

Query: 3   DMEVGIVGGGLAGLVAAISLVEKGVDVSIIGPKSKDSNS--YLAQAGIAFPLVEGDSIRI 60
           + +V ++G G+AG++AAI     G  V I    +  S S  Y    G+     E  +   
Sbjct: 12  ECDVFVMGAGIAGIMAAIEASNNGQKVIISSSSNIFSGSSFYPGTWGLGLIGPEDRNDEE 71

Query: 61  HVLDTIR-AGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTIKS- 118
            +  TI+  G  I DEE+V   +     +   L   GV        G       F  K+ 
Sbjct: 72  DLAKTIKKVGCNIVDEELVETFVKNINPSIDLLKEMGVKLKEANNSGEKEFIPCFDHKNR 131

Query: 119 -------ETGKHVIPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNG-----ELLKF 166
                  E+ K V+    K    L   F    V EI  ++ K+ GV L       E +K 
Sbjct: 132 NWNGILFESAKKVLDHKLKSNEVLEYPFSE--VIEIVKEDNKIIGVILINSLNKLEFIKC 189

Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALK-GVPLRDMEFVQFHPTGFI------- 218
            A+V+A+GG  GL+++     +  G+    LALK G  L ++EF+Q  P G+I       
Sbjct: 190 KALVIASGGIGGLFKYRLNTTDITGMGQA-LALKAGCNLTNIEFMQMMP-GYIKPCPKTI 247

Query: 219 -GRRTYLITEAVRGAGAKLVTGDGERFVNELETRDV------------VARAIYLKMLEG 265
              +T+   EA R    + V  D E    +LE R              +  AI+ + ++ 
Sbjct: 248 FNEKTFKYIEA-RNEEGEDVFKDIENLREKLEKRSTYGPFTSRLDSKDIDYAIFKEFMKN 306

Query: 266 KGVFLDARGIEDFKDRFPYVYSV----LKKEGIDPGKDLIPVTPVAHYTMGGISVDIFYR 321
           K   +  R  +  K+  P    V    LK+       D I +    H   GGIS++ +  
Sbjct: 307 KNG-VTVRYKDSLKNNMPEFIEVYFKWLKENKHLTPDDEINIGIFFHAANGGISINKWAE 365

Query: 322 TRIRGLYAIGEAASNGFHGANRLASNSLLECVVSGLEVARTILREEPKRGANDAP----- 376
           T++ GL+A GE  + G HGA+R+   S    +V G    ++  R    +G ++       
Sbjct: 366 TKVDGLFAAGEC-TGGMHGADRIGGLSTANGLVFGKIAGKSASRYASSKGLSEKEEVEFE 424

Query: 377 -YNFDELGD-VDSIREIMWNHAGIVRDKSSLLEGLKKLEGVEA---------------DQ 419
            Y  +  GD +  ++EIM+ +A I + +  +   L KLE +                   
Sbjct: 425 AYEIEGAGDLILEVQEIMFKNAMIEKSEVGVKNSLLKLEEISKGFVYKKEVNMENLRNSY 484

Query: 420 RLK---VVAKAVLTLALEREESRGSHYRRDFPFMRKEFER 456
           RL+   ++ KA+L     R+ESRGSHYR D+P   K  ++
Sbjct: 485 RLENNILLCKAILKAIDLRKESRGSHYRYDYPKANKNMDK 524


>gb|AAC02811.1| (U76909) succinate dehydrogenase flavoprotein subunit [Rickettsia
           sp.]
           Length = 297
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 34/244 (13%)

Query: 56  DSIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEG--------- 106
           D  R H+ DT++   ++ D++ +  +   + +A   L  +GV F+  E EG         
Sbjct: 12  DDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTE-EGKIYQRPFGG 70

Query: 107 -------GHSHPRVFTIKSETGKHVIPILEKHARELGVNF-VRGFVEEIGIKNGKLAGVF 158
                  G +  R       TG  ++  L + + +  V F +  F  ++ +++G+  GV 
Sbjct: 71  MTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFIEYFAIDLLMEDGECRGVV 130

Query: 159 L----NGELLKFDA--VVVATGGFSGLYRFTAGVKENIGLLIGDLALK-GVPLRDMEFVQ 211
                +G L  F A  VV+ATGG+   Y F+A          G +A++ G+PL+DMEFVQ
Sbjct: 131 AWNLDDGSLHCFRAHNVVLATGGYGRAY-FSATSAHTCTGDGGGMAIRAGLPLQDMEFVQ 189

Query: 212 FHPTGFIGRRTYLITEAVRGAGAKLVTGDGERFV-------NELETRDVVARAIYLKMLE 264
           FHPTG I     LITE  RG G  LV  +GERF+        +L +RDVV+RA+ +++ E
Sbjct: 190 FHPTG-IYSAGCLITEGARGEGGYLVNANGERFMERYAPAAKDLASRDVVSRAMTIEIRE 248

Query: 265 GKGV 268
           G+GV
Sbjct: 249 GRGV 252


>emb|CAB37062.1| (AJ236923) ifc3 protein [Shewanella frigidimarina]
           Length = 588
           
 Score = 95.6 bits (234), Expect = 1e-18
 Identities = 114/437 (26%), Positives = 182/437 (41%), Gaps = 92/437 (21%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSII------GPKSKDSNSYLAQAGIAFPLVEG--D 56
           +V +VG G AG  A+++  + G +V ++      G  S  S   +   G       G  D
Sbjct: 145 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVED 204

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTI 116
            +   + D ++ G+  ND ++V  +  +S +   +L S G      +  GG    R    
Sbjct: 205 KVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRP 264

Query: 117 KS--ETGKHVIPILEKHARELGVN------FVRGFVEE----IG-IKNGKLAGVFLNGEL 163
                +G  +I  L K A+E G++       V+  V +    +G + +GK  G ++ G  
Sbjct: 265 HGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA- 323

Query: 164 LKFDAVVVATGGFS------GLYRFTAG--VKENIGLLIGDLALK----GVPLRDMEFVQ 211
               +VV+ATGG+         YR T       N     GD  L     G  + D+++VQ
Sbjct: 324 ---KSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQ 380

Query: 212 FHPTGFIGRRT-YLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL 270
            HPT  +G+ +  LI+E VRG GA +V  DG RF++EL TRD  + AI  +  +   +  
Sbjct: 381 AHPT--VGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIF 438

Query: 271 D---------ARGIEDFKDRF--PYVYSVLKKEG----------------IDPGKD---- 299
           D          RG +  +  +    V  + K  G                +  GKD    
Sbjct: 439 DNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFG 498

Query: 300 --------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGFH 339
                          + V P  H+TMGG++++            I GL+A GE  + G H
Sbjct: 499 RADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGE-VTGGVH 557

Query: 340 GANRLASNSLLECVVSG 356
           G NRL  N++ + VV G
Sbjct: 558 GYNRLGGNAIADTVVFG 574


>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
           >gi|11514095|pdb|1QO8|D Chain D, The Structure Of The
           Open Conformation Of A Flavocytochrome C3 Fumarate
           Reductase
           Length = 566
           
 Score = 95.6 bits (234), Expect = 1e-18
 Identities = 114/437 (26%), Positives = 182/437 (41%), Gaps = 92/437 (21%)

Query: 5   EVGIVGGGLAGLVAAISLVEKGVDVSII------GPKSKDSNSYLAQAGIAFPLVEG--D 56
           +V +VG G AG  A+++  + G +V ++      G  S  S   +   G       G  D
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVED 182

Query: 57  SIRIHVLDTIRAGKYINDEEVVWNVISKSTEAYSFLVSHGVTFTGNELEGGHSHPRVFTI 116
            +   + D ++ G+  ND ++V  +  +S +   +L S G      +  GG    R    
Sbjct: 183 KVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRP 242

Query: 117 KS--ETGKHVIPILEKHARELGVN------FVRGFVEE----IG-IKNGKLAGVFLNGEL 163
                +G  +I  L K A+E G++       V+  V +    +G + +GK  G ++ G  
Sbjct: 243 HGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA- 301

Query: 164 LKFDAVVVATGGFS------GLYRFTAG--VKENIGLLIGDLALK----GVPLRDMEFVQ 211
               +VV+ATGG+         YR T       N     GD  L     G  + D+++VQ
Sbjct: 302 ---KSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQ 358

Query: 212 FHPTGFIGRRT-YLITEAVRGAGAKLVTGDGERFVNELETRDVVARAIYLKMLEGKGVFL 270
            HPT  +G+ +  LI+E VRG GA +V  DG RF++EL TRD  + AI  +  +   +  
Sbjct: 359 AHPT--VGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIF 416

Query: 271 D---------ARGIEDFKDRF--PYVYSVLKKEG----------------IDPGKD---- 299
           D          RG +  +  +    V  + K  G                +  GKD    
Sbjct: 417 DNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFG 476

Query: 300 --------------LIPVTPVAHYTMGGISVDI------FYRTRIRGLYAIGEAASNGFH 339
                          + V P  H+TMGG++++            I GL+A GE  + G H
Sbjct: 477 RADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGE-VTGGVH 535

Query: 340 GANRLASNSLLECVVSG 356
           G NRL  N++ + VV G
Sbjct: 536 GYNRLGGNAIADTVVFG 552


>pir||S21302 succinate dehydrogenase (EC 1.3.99.1) flavoprotein - human
           (fragment) >gi|36643|emb|CAA37886.1| (X53943) succinate
           dehydrogenase  flavoprotein subunit [Homo sapiens]
           Length = 377
           
 Score = 88.9 bits (217), Expect = 1e-16
 Identities = 95/347 (27%), Positives = 150/347 (42%), Gaps = 71/347 (20%)

Query: 167 DAVVVATGGFSGLYRFTAGVKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIGR-RTYLI 225
           DAV++ATGG   ++  T     N G     +  +G    + EF+Q HPT   G  +  L+
Sbjct: 32  DAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLM 91

Query: 226 TEAVRGAGAKLVT---GDGERFVNE-------LETRDVVARAIYLKMLEGK-GVFLDARG 274
           +E+ RG G ++ T   G    F+ E       L  RD+  R I+   +  K G+  +   
Sbjct: 92  SESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDMPTREIFDVCINQKLGINGENMV 151

Query: 275 IEDFKDRFPYVYSVL---------KKEGIDPGKDLIPVTPVAHYTMGGISVDIFYRTRIR 325
             D   + P+   V          K  G DP K  + + P  HY+MGG+ VD    T I+
Sbjct: 152 YLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIK 211

Query: 326 GLYAIGEAASNGFHGANRLASNSLLECV-------------VSGLEVARTILREE--PKR 370
           GL+A GE   +  HG NRL +NSLL  +             +S ++ + T + E    KR
Sbjct: 212 GLFAAGECDFSQ-HGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKR 270

Query: 371 GANDAPYNFDEL----GDVDSIR------EIMWNHAGIVRDKSSLLEG-------LKKLE 413
            A +    FD+L    G  ++ +      EIM  +  +VR+   LLE        +K+ E
Sbjct: 271 KAEEQE-RFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYE 329

Query: 414 GVEADQ----------------RLKVVAKAVLTLALEREESRGSHYR 444
            ++ +                  + V+A+ +   A  R ESR +HY+
Sbjct: 330 DIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRAAHYK 376


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171753379
Number of Sequences: 2977
Number of extensions: 7611956
Number of successful extensions: 19618
Number of sequences better than 1.0e-10: 117
Number of HSP's better than  0.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 18908
Number of HSP's gapped (non-prelim): 164
length of query: 464
length of database: 189,106,746
effective HSP length: 56
effective length of query: 408
effective length of database: 155,591,474
effective search space: 63481321392
effective search space used: 63481321392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)