BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2344 (PAB2344) DE:Hypothetical protein
(396 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75186 hypothetical protein PAB2344 - Pyrococcus abyssi (st... 774 0.0
pir||C71219 hypothetical protein PH0014 - Pyrococcus horikoshii ... 620 e-176
gi|11497877 A. fulgidus predicted coding region AF0261 [Archaeog... 218 8e-56
pir||A72373 conserved hypothetical protein - Thermotoga maritima... 154 2e-36
>pir||B75186 hypothetical protein PAB2344 - Pyrococcus abyssi (strain Orsay)
>gi|5457446|emb|CAB48937.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 396
Score = 774 bits (1976), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MVEIILLLASFLVVIILIWLKVNIGVSIFLGALTLAFLSGLGINGALHSLYSTITSWSTL 60
MVEIILLLASFLVVIILIWLKVNIGVSIFLGALTLAFLSGLGINGALHSLYSTITSWSTL
Sbjct: 1 MVEIILLLASFLVVIILIWLKVNIGVSIFLGALTLAFLSGLGINGALHSLYSTITSWSTL 60
Query: 61 RLILIISFIMGITSVFSQIGYLKDMENAVLHLFPKAKHSLWTLPALIGLMPMPAGALVSA 120
RLILIISFIMGITSVFSQIGYLKDMENAVLHLFPKAKHSLWTLPALIGLMPMPAGALVSA
Sbjct: 61 RLILIISFIMGITSVFSQIGYLKDMENAVLHLFPKAKHSLWTLPALIGLMPMPAGALVSA 120
Query: 121 PMIEPVANKFNLKPEVKTLINYWFRHVWELSWPMYQAIVITSAVVGISIREISVKMFPLT 180
PMIEPVANKFNLKPEVKTLINYWFRHVWELSWPMYQAIVITSAVVGISIREISVKMFPLT
Sbjct: 121 PMIEPVANKFNLKPEVKTLINYWFRHVWELSWPMYQAIVITSAVVGISIREISVKMFPLT 180
Query: 181 ILMATIGYLFFVYSLKEDKANGRNKVTGLKMLLKATYPILVIIVLSIILGLDMLYGSLVG 240
ILMATIGYLFFVYSLKEDKANGRNKVTGLKMLLKATYPILVIIVLSIILGLDMLYGSLVG
Sbjct: 181 ILMATIGYLFFVYSLKEDKANGRNKVTGLKMLLKATYPILVIIVLSIILGLDMLYGSLVG 240
Query: 241 FLSILLPNLKRISLKEVLTRAFQPRIVFLLIAVMYFKDVIEASGLVDVLPRIMLSFHVPI 300
FLSILLPNLKRISLKEVLTRAFQPRIVFLLIAVMYFKDVIEASGLVDVLPRIMLSFHVPI
Sbjct: 241 FLSILLPNLKRISLKEVLTRAFQPRIVFLLIAVMYFKDVIEASGLVDVLPRIMLSFHVPI 300
Query: 301 IIILLVTPFIIGLMTGISFAYVAMVFPLLKPFFTGFDKIALAYLGGYMGMLFSPVHLCLV 360
IIILLVTPFIIGLMTGISFAYVAMVFPLLKPFFTGFDKIALAYLGGYMGMLFSPVHLCLV
Sbjct: 301 IIILLVTPFIIGLMTGISFAYVAMVFPLLKPFFTGFDKIALAYLGGYMGMLFSPVHLCLV 360
Query: 361 FSAEYYKADLGKVYLRMLLPSLTFLVAGLLYIWLIL 396
FSAEYYKADLGKVYLRMLLPSLTFLVAGLLYIWLIL
Sbjct: 361 FSAEYYKADLGKVYLRMLLPSLTFLVAGLLYIWLIL 396
>pir||C71219 hypothetical protein PH0014 - Pyrococcus horikoshii
>gi|3256399|dbj|BAA29082.1| (AP000001) 395aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 395
Score = 620 bits (1581), Expect = e-176
Identities = 301/393 (76%), Positives = 347/393 (87%)
Query: 4 IILLLASFLVVIILIWLKVNIGVSIFLGALTLAFLSGLGINGALHSLYSTITSWSTLRLI 63
I LLL SF VVI+LIWLKVNIG+SIF GALTLA LSGLGI+G L SLY SW T+RLI
Sbjct: 3 ITLLLISFAVVIVLIWLKVNIGISIFTGALTLALLSGLGISGTLKSLYLATISWDTMRLI 62
Query: 64 LIISFIMGITSVFSQIGYLKDMENAVLHLFPKAKHSLWTLPALIGLMPMPAGALVSAPMI 123
LII+FIMGIT VFSQIGYLK ME LHLFPKAKHSLWTLPALIGLMPMPAGALVSAPMI
Sbjct: 63 LIIAFIMGITEVFSQIGYLKKMEEGTLHLFPKAKHSLWTLPALIGLMPMPAGALVSAPMI 122
Query: 124 EPVANKFNLKPEVKTLINYWFRHVWELSWPMYQAIVITSAVVGISIREISVKMFPLTILM 183
E VA KF L PEVKT INYWFRH+WELSWPMYQAIV+ SA++G+SIREISVKMFPLTILM
Sbjct: 123 EGVAKKFKLNPEVKTFINYWFRHIWELSWPMYQAIVLMSAILGLSIREISVKMFPLTILM 182
Query: 184 ATIGYLFFVYSLKEDKANGRNKVTGLKMLLKATYPILVIIVLSIILGLDMLYGSLVGFLS 243
A IGY+FF++ LKE++ + +NK+ GL+ML+++ YPI++IIV+S+I G+DMLYGS +GFLS
Sbjct: 183 ALIGYVFFIHPLKENEKSDKNKMKGLRMLIESIYPIVIIIVISVIFGVDMLYGSFLGFLS 242
Query: 244 ILLPNLKRISLKEVLTRAFQPRIVFLLIAVMYFKDVIEASGLVDVLPRIMLSFHVPIIII 303
IL+PN RI+LKEVL RAFQPRIVFLLIAVMYFK+VIE SGLV+ +P++MLSFHVP+ ++
Sbjct: 243 ILIPNFMRINLKEVLERAFQPRIVFLLIAVMYFKEVIEVSGLVNSIPKLMLSFHVPVALV 302
Query: 304 LLVTPFIIGLMTGISFAYVAMVFPLLKPFFTGFDKIALAYLGGYMGMLFSPVHLCLVFSA 363
L +TPFIIGLMTGISFAYVAMVFPLL+PFFTGFDK+ALAYLGGYMG+LFSPVHLCLVFSA
Sbjct: 303 LTLTPFIIGLMTGISFAYVAMVFPLLEPFFTGFDKVALAYLGGYMGILFSPVHLCLVFSA 362
Query: 364 EYYKADLGKVYLRMLLPSLTFLVAGLLYIWLIL 396
EYY A+L KVY +MLLPSL F + GL+YI IL
Sbjct: 363 EYYGAELRKVYRKMLLPSLVFFIVGLMYIVSIL 395
>gi|11497877 A. fulgidus predicted coding region AF0261 [Archaeoglobus fulgidus]
>gi|7483396|pir||E69282 hypothetical protein AF0261 -
Archaeoglobus fulgidus >gi|2650379|gb|AAB90973.1|
(AE001087) A. fulgidus predicted coding region AF0261
[Archaeoglobus fulgidus]
Length = 405
Score = 218 bits (550), Expect = 8e-56
Identities = 134/395 (33%), Positives = 217/395 (54%), Gaps = 22/395 (5%)
Query: 5 ILLLASFLVVIILIWLKVNIGVSIFLGALTLAFLSGLGINGALHSLYSTITSWSTLRLIL 64
+ LL S VV+ILI KVNIG++IF+G+ LA+L+ LG +G L L S + + T+ +++
Sbjct: 21 LALLFSIAVVLILI-RKVNIGLAIFVGSAILAYLT-LGADGLLVMLKS-LANPQTIEIVV 77
Query: 65 IISFIMGITSVFSQIGYLKDMENAVLHLFPKAKHSLWTLPALIGLMPMPAGALVSAPMIE 124
I+ + G L+ + + F +S +P LIGL+PMP GAL+SA M+
Sbjct: 78 IVILAFTLGYSMEYFGMLEKVTGGLSESF--GVYSFLLIPLLIGLLPMPGGALISAVMLG 135
Query: 125 PVANKFNLKPEVKTLINYWFRHVWELSWPMYQAIVITSAVVGISIREISVKMFPLTILMA 184
P+ + + PE TL+NYWFRHVW WP+Y +++I +AVV + + FP+ +
Sbjct: 136 PLTKMYRISPEKATLLNYWFRHVWVTFWPLYPSVIIGAAVVNVDYFHFAAATFPIGVFAL 195
Query: 185 TIGYLFFVYSLKEDKANGRNKVTGLKMLLKATYPILVIIVLSIILGLDMLYGSLVGFLSI 244
T G L ++ RN L L YPI ++++LS++L LD+L +V ++
Sbjct: 196 TAG-LTLTRGMERRFRVSRNLFDSLINL----YPIAILLILSVLLRLDLLLALVVAIAAV 250
Query: 245 LLPNLKRI-SLKEVLTRAFQPRIVFLLIAVMYFKDVIEASGLVDVL-PRIMLSFHVPIII 302
+ N ++ +E+ R +I+ L+ AVM +K VI+ SG + L I L F P
Sbjct: 251 SIHNRAKLEDFREIFRRTVDKKIILLVFAVMVYKSVIQNSGAAESLFTDISLGFPAPAAA 310
Query: 303 ILLVTPFIIGLMTGISFAYVAMVFPLLKPFFTG-----FDKIALAYLGGYMGMLFSPVHL 357
LL ++G TGI +Y ++ PLL FTG + L GY+G++ SP+HL
Sbjct: 311 FLLT--LLVGFATGIEMSYSSIALPLLTS-FTGSGIVVAKNLMLVIAAGYIGVMLSPMHL 367
Query: 358 CLVFSAEYYKADLGKVYLRMLLPSLTFLVAGLLYI 392
C + +AEY+ ++GK Y ++L ++ + A L++I
Sbjct: 368 CYILTAEYFGTEIGKTYRQLL--AIAGITAALVWI 400
>pir||A72373 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980990|gb|AAD35565.1|AE001725_10 (AE001725)
conserved hypothetical protein [Thermotoga maritima]
Length = 382
Score = 154 bits (385), Expect = 2e-36
Identities = 115/409 (28%), Positives = 213/409 (51%), Gaps = 40/409 (9%)
Query: 1 MVEIILLLASFLVVIILIWLKVNIGVSIFLGALTLAFLSGLGINGALHSLYSTITSWSTL 60
M + +LL+ F V+++ K + +S+ G + + + L + L + T++S S
Sbjct: 1 MNTLSVLLSLFTVIVVQRVFK-KLSISLLSGVIVM--ILSLKVRNILEIFFWTVSSDSFW 57
Query: 61 RLILIISFIMGITSVFSQIGYLKDMENAVLHLFPKAKHSLWTLPALIGLMPMPAGALVSA 120
LI+ + I ++ + + G + +F K S +PALIGLMPMP GAL +A
Sbjct: 58 SLIVTVFLIYLLSGMMEKSGDYSRFSEEMRTIFSKNVDSF--VPALIGLMPMPGGALFTA 115
Query: 121 PMIE-PVANKFNLKPEVKTLINYWFRHVWELSWPMYQAIVITSAVVGISIREISVKMFPL 179
P+++ + + +LK VK NYWFRH E WP+Y A+V+ S + GI ++S+ +FP+
Sbjct: 116 PIVKNSLPEENSLKLAVK---NYWFRHTIEFFWPIYPAVVLVSELSGIHPGKVSLTLFPV 172
Query: 180 TILMATIGYLFFVYSLKEDKANGRNKVTGLKMLLKA-----TYPILVIIVLSIILGLDML 234
+ +G+ FF NG+ L L K +P++ ++ +++ L
Sbjct: 173 FAIAFFLGWFFF---------NGKQ----LPCLSKPRSFFNLFPLIPVLGTGVLI----L 215
Query: 235 YGSLVGFLSILLPN-----LKRISLKEVLTRAFQPRIVFLLIAVMY-FKDVIEASGLVDV 288
+ G+ ++LL +R L + L + F VFL++ +Y +K V+E SG+ +
Sbjct: 216 LFKVSGWFALLLSTSGYAVFRRRYLLKTLKQVFNKWDVFLVLFFVYIYKVVVEHSGVGEG 275
Query: 289 LPRIMLSFHVPIIIILLVTPFIIGLMTGISFAYVAMVFPLLKPFFTGFDKIAL-AYLGGY 347
+ + +++ I+L+ P + G+ TGI+ A V + P+L F+ K A+ Y+
Sbjct: 276 IAAEFVRWNLSPWILLIFLPLVSGISTGITQAAVGISLPVLMEVFS--SKYAVYTYMFAV 333
Query: 348 MGMLFSPVHLCLVFSAEYYKADLGKVYLRMLLPSLTFLVAGLLYIWLIL 396
G++ SPVHLC+V SA++++ ++ + ++ LP + L+ G L + +IL
Sbjct: 334 GGVILSPVHLCVVLSAKFFEVEVFDILKKVFLPLVLTLILGALVLGVIL 382
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.147 0.438
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136827686
Number of Sequences: 2977
Number of extensions: 5629955
Number of successful extensions: 20078
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20066
Number of HSP's gapped (non-prelim): 4
length of query: 396
length of database: 189,106,746
effective HSP length: 52
effective length of query: 344
effective length of database: 157,985,422
effective search space: 54346985168
effective search space used: 54346985168
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 166 (69.1 bits)