BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2346 (PAB2346) DE:Hypothetical protein
(266 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75185 hypothetical protein PAB2346 - Pyrococcus abyssi (st... 535 e-151
pir||A71219 hypothetical protein PH0012 - Pyrococcus horikoshii ... 386 e-106
pir||S77356 hypothetical protein sll1469 - Synechocystis sp. (st... 69 5e-11
>pir||H75185 hypothetical protein PAB2346 - Pyrococcus abyssi (strain Orsay)
>gi|5457444|emb|CAB48935.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 266
Score = 535 bits (1364), Expect = e-151
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI 60
MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI
Sbjct: 1 MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI 60
Query: 61 FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRLDASSQGYGLYKKFNFTDE 120
FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRLDASSQGYGLYKKFNFTDE
Sbjct: 61 FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRLDASSQGYGLYKKFNFTDE 120
Query: 121 YRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGVEN 180
YRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGVEN
Sbjct: 121 YRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGVEN 180
Query: 181 EGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVELTS 240
EGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVELTS
Sbjct: 181 EGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVELTS 240
Query: 241 CTRMRLGDKVEENVHMVFGILTYAKG 266
CTRMRLGDKVEENVHMVFGILTYAKG
Sbjct: 241 CTRMRLGDKVEENVHMVFGILTYAKG 266
>pir||A71219 hypothetical protein PH0012 - Pyrococcus horikoshii
>gi|3256397|dbj|BAA29080.1| (AP000001) 269aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 269
Score = 386 bits (982), Expect = e-106
Identities = 184/268 (68%), Positives = 224/268 (82%), Gaps = 2/268 (0%)
Query: 1 MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI 60
+IR AT +DI+DMVS+FIDAYN+ GPR+SV S EISL+VQP+GCL+AF+ +PVGMGCI
Sbjct: 2 IIRYATPDDIEDMVSIFIDAYNFPGPRESVKSSFEISLEVQPDGCLLAFLKDEPVGMGCI 61
Query: 61 FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGK--TIRLDASSQGYGLYKKFNFT 118
F Y K AW+GLMGVKK YQRRGIGTE+F+RLL+IG+ K TIRLDASSQGYGLYKKF F
Sbjct: 62 FFYNKQAWIGLMGVKKAYQRRGIGTEVFRRLLEIGRRKVDTIRLDASSQGYGLYKKFKFV 121
Query: 119 DEYRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGV 178
DEYRTVRYEL RP+K+VEGV E+ +IP WV+E+DK+AFGDDR RVL Y+ GARL+
Sbjct: 122 DEYRTVRYELMERPIKRVEGVVEVNKIPNWVKEIDKKAFGDDRIRVLEAYMRRGARLLCA 181
Query: 179 ENEGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVEL 238
ENEGFG+VYRG+IGPLVA S ++AEKI+LKAF L REII+P+ N+DA++LIK F P ++
Sbjct: 182 ENEGFGLVYRGKIGPLVADSPRVAEKILLKAFQLGAREIIIPEVNKDALELIKIFKPSQV 241
Query: 239 TSCTRMRLGDKVEENVHMVFGILTYAKG 266
TSC RMRLG K+EE V + +GIL YAKG
Sbjct: 242 TSCMRMRLGSKIEEKVDIYYGILAYAKG 269
>pir||S77356 hypothetical protein sll1469 - Synechocystis sp. (strain PCC 6803)
>gi|1652538|dbj|BAA17459.1| (D90906) hypothetical
protein [Synechocystis sp.]
Length = 285
Score = 69.1 bits (166), Expect = 5e-11
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 44 GCLIAFIDGKPVG-MGCIFLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRL 102
G + +DG+P+ + + ++ ++G VK EY+ +G G +I++R L +G I L
Sbjct: 46 GFFVGLLDGEPIATISAVKYNQEFGFIGFYIVKPEYRGQGYGWQIWQRALDYLQGCNIGL 105
Query: 103 DASSQGYGLYKKFNFTDEYRTVRYELRNRPLKKVE-GVKELKEIPGWVEEL--DKEAFGD 159
D Y+K F YR +RY+ L + L++ W + L D + F
Sbjct: 106 DGVLAQQANYQKSGFHLAYRNIRYQGVTGGLSSPSPHLVPLEDAMAWEDVLAYDDQCFPA 165
Query: 160 DRTRVLRLYL-ESGARLIGVENEGFGMVYRG-----------RIGPLVAISRKIAEKIML 207
R LR + +SG + I + +G + RG +IGPL A + ++AE I L
Sbjct: 166 PREEFLRTWCHQSGHQAIAYQEDG---ILRGYGVLRPCRVGYKIGPLFADTPEVAEIIFL 222
Query: 208 KAFLLRGRE----IIVPDANEDAMDLIKKFSPVELTSCTRMRLGDKVEENVHMVFGILTY 263
+ E + VP+ N+ A+ L K+S + RM G + ++G+ ++
Sbjct: 223 ALKAIPTAENTIYLDVPEPNQAAITLATKYSLQVVFETARMYTGQAPSIALDKIYGVTSF 282
Query: 264 AKG 266
G
Sbjct: 283 ELG 285
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96768327
Number of Sequences: 2977
Number of extensions: 4125476
Number of successful extensions: 8648
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8644
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 189,106,746
effective HSP length: 53
effective length of query: 213
effective length of database: 157,386,935
effective search space: 33523417155
effective search space used: 33523417155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)