BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2346 (PAB2346) DE:Hypothetical protein
         (266 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75185 hypothetical protein PAB2346 - Pyrococcus abyssi (st...   535  e-151
pir||A71219 hypothetical protein PH0012 - Pyrococcus horikoshii ...   386  e-106
pir||S77356 hypothetical protein sll1469 - Synechocystis sp. (st...    69  5e-11

>pir||H75185 hypothetical protein PAB2346 - Pyrococcus abyssi (strain Orsay)
           >gi|5457444|emb|CAB48935.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 266
           
 Score =  535 bits (1364), Expect = e-151
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI 60
           MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI
Sbjct: 1   MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI 60

Query: 61  FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRLDASSQGYGLYKKFNFTDE 120
           FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRLDASSQGYGLYKKFNFTDE
Sbjct: 61  FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRLDASSQGYGLYKKFNFTDE 120

Query: 121 YRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGVEN 180
           YRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGVEN
Sbjct: 121 YRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGVEN 180

Query: 181 EGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVELTS 240
           EGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVELTS
Sbjct: 181 EGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVELTS 240

Query: 241 CTRMRLGDKVEENVHMVFGILTYAKG 266
           CTRMRLGDKVEENVHMVFGILTYAKG
Sbjct: 241 CTRMRLGDKVEENVHMVFGILTYAKG 266


>pir||A71219 hypothetical protein PH0012 - Pyrococcus horikoshii
           >gi|3256397|dbj|BAA29080.1| (AP000001) 269aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 269
           
 Score =  386 bits (982), Expect = e-106
 Identities = 184/268 (68%), Positives = 224/268 (82%), Gaps = 2/268 (0%)

Query: 1   MIRVATFEDIDDMVSVFIDAYNYTGPRDSVAKSMEISLKVQPNGCLIAFIDGKPVGMGCI 60
           +IR AT +DI+DMVS+FIDAYN+ GPR+SV  S EISL+VQP+GCL+AF+  +PVGMGCI
Sbjct: 2   IIRYATPDDIEDMVSIFIDAYNFPGPRESVKSSFEISLEVQPDGCLLAFLKDEPVGMGCI 61

Query: 61  FLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGK--TIRLDASSQGYGLYKKFNFT 118
           F Y K AW+GLMGVKK YQRRGIGTE+F+RLL+IG+ K  TIRLDASSQGYGLYKKF F 
Sbjct: 62  FFYNKQAWIGLMGVKKAYQRRGIGTEVFRRLLEIGRRKVDTIRLDASSQGYGLYKKFKFV 121

Query: 119 DEYRTVRYELRNRPLKKVEGVKELKEIPGWVEELDKEAFGDDRTRVLRLYLESGARLIGV 178
           DEYRTVRYEL  RP+K+VEGV E+ +IP WV+E+DK+AFGDDR RVL  Y+  GARL+  
Sbjct: 122 DEYRTVRYELMERPIKRVEGVVEVNKIPNWVKEIDKKAFGDDRIRVLEAYMRRGARLLCA 181

Query: 179 ENEGFGMVYRGRIGPLVAISRKIAEKIMLKAFLLRGREIIVPDANEDAMDLIKKFSPVEL 238
           ENEGFG+VYRG+IGPLVA S ++AEKI+LKAF L  REII+P+ N+DA++LIK F P ++
Sbjct: 182 ENEGFGLVYRGKIGPLVADSPRVAEKILLKAFQLGAREIIIPEVNKDALELIKIFKPSQV 241

Query: 239 TSCTRMRLGDKVEENVHMVFGILTYAKG 266
           TSC RMRLG K+EE V + +GIL YAKG
Sbjct: 242 TSCMRMRLGSKIEEKVDIYYGILAYAKG 269


>pir||S77356 hypothetical protein sll1469 - Synechocystis sp. (strain PCC 6803)
           >gi|1652538|dbj|BAA17459.1| (D90906) hypothetical
           protein [Synechocystis sp.]
           Length = 285
           
 Score = 69.1 bits (166), Expect = 5e-11
 Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 23/243 (9%)

Query: 44  GCLIAFIDGKPVG-MGCIFLYKKVAWVGLMGVKKEYQRRGIGTEIFKRLLKIGKGKTIRL 102
           G  +  +DG+P+  +  +   ++  ++G   VK EY+ +G G +I++R L   +G  I L
Sbjct: 46  GFFVGLLDGEPIATISAVKYNQEFGFIGFYIVKPEYRGQGYGWQIWQRALDYLQGCNIGL 105

Query: 103 DASSQGYGLYKKFNFTDEYRTVRYELRNRPLKKVE-GVKELKEIPGWVEEL--DKEAFGD 159
           D        Y+K  F   YR +RY+     L      +  L++   W + L  D + F  
Sbjct: 106 DGVLAQQANYQKSGFHLAYRNIRYQGVTGGLSSPSPHLVPLEDAMAWEDVLAYDDQCFPA 165

Query: 160 DRTRVLRLYL-ESGARLIGVENEGFGMVYRG-----------RIGPLVAISRKIAEKIML 207
            R   LR +  +SG + I  + +G   + RG           +IGPL A + ++AE I L
Sbjct: 166 PREEFLRTWCHQSGHQAIAYQEDG---ILRGYGVLRPCRVGYKIGPLFADTPEVAEIIFL 222

Query: 208 KAFLLRGRE----IIVPDANEDAMDLIKKFSPVELTSCTRMRLGDKVEENVHMVFGILTY 263
               +   E    + VP+ N+ A+ L  K+S   +    RM  G      +  ++G+ ++
Sbjct: 223 ALKAIPTAENTIYLDVPEPNQAAITLATKYSLQVVFETARMYTGQAPSIALDKIYGVTSF 282

Query: 264 AKG 266
             G
Sbjct: 283 ELG 285


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96768327
Number of Sequences: 2977
Number of extensions: 4125476
Number of successful extensions: 8648
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8644
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 189,106,746
effective HSP length: 53
effective length of query: 213
effective length of database: 157,386,935
effective search space: 33523417155
effective search space used: 33523417155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)