BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2349 (PAB2349) DE:Hypothetical protein
(272 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75185 hypothetical protein PAB2349 - Pyrococcus abyssi (st... 553 e-157
pir||C71218 hypothetical protein PH0006 - Pyrococcus horikoshii ... 510 e-144
gi|11498233 conserved hypothetical protein [Archaeoglobus fulgid... 166 3e-40
sp|Q57630|Y166_METJA HYPOTHETICAL PROTEIN MJ0166 >gi|2128164|pir... 130 2e-29
emb|CAC11171.1| (AL445063) hypothetical protein [Thermoplasma ac... 122 5e-27
gb|AAK42404.1| Conserved hypothetical protein [Sulfolobus solfat... 101 1e-20
gb|AAG18938.1| (AE004995) Vng0378c [Halobacterium sp. NRC-1] 94 1e-18
pir||C72628 hypothetical protein APE1483 - Aeropyrum pernix (str... 94 2e-18
gb|AAD20081.1| (AC006836) unknown protein [Arabidopsis thaliana] 91 1e-17
>pir||C75185 hypothetical protein PAB2349 - Pyrococcus abyssi (strain Orsay)
>gi|5457439|emb|CAB48930.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 272
Score = 553 bits (1410), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MKVIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLD 60
MKVIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLD
Sbjct: 1 MKVIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLD 60
Query: 61 REIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLA 120
REIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLA
Sbjct: 61 REIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLA 120
Query: 121 LLKMNELNDLGWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYVLD 180
LLKMNELNDLGWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYVLD
Sbjct: 121 LLKMNELNDLGWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYVLD 180
Query: 181 NYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQPVSRDVILKAINRFHEKV 240
NYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQPVSRDVILKAINRFHEKV
Sbjct: 181 NYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQPVSRDVILKAINRFHEKV 240
Query: 241 EAIYVDWKGSKGETRQLAKSLAQELGLEFIKD 272
EAIYVDWKGSKGETRQLAKSLAQELGLEFIKD
Sbjct: 241 EAIYVDWKGSKGETRQLAKSLAQELGLEFIKD 272
>pir||C71218 hypothetical protein PH0006 - Pyrococcus horikoshii
>gi|3256391|dbj|BAA29074.1| (AP000001) 274aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 274
Score = 510 bits (1300), Expect = e-144
Identities = 248/274 (90%), Positives = 262/274 (95%), Gaps = 2/274 (0%)
Query: 1 MKVIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLD 60
MKVIMTTKVDKASMNIM KLIENFGFKETE FDGNPVYK+ D++ILTTNDEMIYYDYLD
Sbjct: 1 MKVIMTTKVDKASMNIMNKLIENFGFKETEYVFDGNPVYKRGDVLILTTNDEMIYYDYLD 60
Query: 61 REIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLA 120
REIE QL FKPEIIAFASRHSSKQKLPALTTHVTGNWG+AMYGGKDESFA+AIPSAMKL+
Sbjct: 61 REIENQLGFKPEIIAFASRHSSKQKLPALTTHVTGNWGKAMYGGKDESFAVAIPSAMKLS 120
Query: 121 LLKMNELNDLGWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYVLD 180
LLKM+ELNDLGWTVCYEATHHGP+ELEVPSFFIEIGSSEEEW+NDRAGEIIAETI+YVLD
Sbjct: 121 LLKMSELNDLGWTVCYEATHHGPTELEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLD 180
Query: 181 NYE--NSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQPVSRDVILKAINRFHE 238
NYE SKFKVALGIGGGHYAPKQTKRAL DLAFGHILPKYAQPVSRDV++KA+NRF E
Sbjct: 181 NYEKGRSKFKVALGIGGGHYAPKQTKRALEGDLAFGHILPKYAQPVSRDVMIKALNRFGE 240
Query: 239 KVEAIYVDWKGSKGETRQLAKSLAQELGLEFIKD 272
KVEAIYVDWKGS+GETRQLAKSLAQELGLEFIKD
Sbjct: 241 KVEAIYVDWKGSRGETRQLAKSLAQELGLEFIKD 274
>gi|11498233 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483036|pir||A69328 conserved hypothetical protein
AF0625 - Archaeoglobus fulgidus
>gi|2649994|gb|AAB90614.1| (AE001061) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 278
Score = 166 bits (415), Expect = 3e-40
Identities = 98/274 (35%), Positives = 150/274 (53%), Gaps = 10/274 (3%)
Query: 1 MKVIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLD 60
MK+++ ++ D A NI L+ F+E ++ +Y D+ I T + +IY D++D
Sbjct: 1 MKLVVCSESDTAGQNIKDNLLTFADFEEKDV--GEFKLYLSDEFYIAETKERLIYADHID 58
Query: 61 REIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLA 120
++ K + F E I FASRHSSK T HV+GN G A +GGK S A P MK
Sbjct: 59 EKLAKYIDF--EEILFASRHSSKDGRKIFTVHVSGNVGTADFGGKPYSLAKPSPQTMKNY 116
Query: 121 LLKMNELNDLG--WTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYV 178
+L + E D + E THHGPSE+ PS F EIGS+EEEW + A E++AE ++
Sbjct: 117 VLALRERLDRKPEFEFTMEVTHHGPSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDA 176
Query: 179 LDNYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYA-QPVSRDVILKAINRFH 237
+ E + VA+G+GG HYAP+QT+ L + FGH KY + ++ + ++KA+
Sbjct: 177 I-RAEKMDWNVAVGVGGTHYAPRQTEIMLTTTFTFGHNFAKYTFEHLTAEFLVKAVKL-- 233
Query: 238 EKVEAIYVDWKGSKGETRQLAKSLAQELGLEFIK 271
+ E I +D K +++ A+ G+E +K
Sbjct: 234 SEAEYIIIDEKSVNSAVKKIVNEAAEVAGVEVLK 267
>sp|Q57630|Y166_METJA HYPOTHETICAL PROTEIN MJ0166 >gi|2128164|pir||G64320 hypothetical
protein MJ0166 - Methanococcus jannaschii
>gi|1498938|gb|AAB98148.1| (U67473) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 255
Score = 130 bits (324), Expect = 2e-29
Identities = 88/279 (31%), Positives = 140/279 (49%), Gaps = 42/279 (15%)
Query: 3 VIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLDRE 62
+++ + D AS NI + E F V++ D ++ T +++ Y DY
Sbjct: 4 LLIASNKDLASKNIANHIKEYFD------------VFETDKELLSLTAEDLEYADYY--- 48
Query: 63 IEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLALL 122
F S+H S P+LT H GN E G + + + LL
Sbjct: 49 ------------IFLSKHKSIANKPSLTVHTPGNLTEDNTFGGNPKEVCPCDAVLNTLLL 96
Query: 123 K--------MNELNDLG-WTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAE 173
K E +G + V +E HH P+ L+ P+ F+EIGSSE+EW+ AGEIIA+
Sbjct: 97 KNIYKNYKTYYEDGKIGEFDVSFEVVHHSPTGLKAPTVFVEIGSSEKEWILKEAGEIIAK 156
Query: 174 TIVYVLDNYENSKF--KV-ALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQPVSRDVIL 230
+++ +D ++ + KV A+G GGGHYAPK TK AL FG+++PKYA VS DV+
Sbjct: 157 SVLETIDAMKSKNYDKKVRAIGFGGGHYAPKFTKLALEDKYYFGYLVPKYAS-VSEDVLN 215
Query: 231 KAINRFHEKVEAIYVDWKGSKGETRQLAKSLAQELGLEF 269
+ I++ +V+ +DWKG +G+ ++ + G+E+
Sbjct: 216 QLISKM--EVDKALIDWKGCRGDDKRRYIEFFENNGIEW 252
>emb|CAC11171.1| (AL445063) hypothetical protein [Thermoplasma acidophilum]
Length = 256
Score = 122 bits (303), Expect = 5e-27
Identities = 87/276 (31%), Positives = 140/276 (50%), Gaps = 28/276 (10%)
Query: 1 MKVIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLD 60
M +I+ ++ D AS+ ++ L E + F E V D ++ D I++D
Sbjct: 1 MHLIVASRSDPASVRMLDYLTEKYTFSEK------GGVLNHGDFDLVIIEDRHIFHDM-- 52
Query: 61 REIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWG-EAMYGGKDESFAIAIPSAMKL 119
LS K + + SRHSS + +LT H TGN+G A GGK + I+ P M
Sbjct: 53 -----SLSGKYDYLVVLSRHSSAADVKSLTAHPTGNFGPSADLGGKPRTINISCPRVMSG 107
Query: 120 ALLKMNE-LNDLGWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYV 178
L +M E + + V +EATHHGP ++P++++EIG++E EW ND E ++ T+ V
Sbjct: 108 TLRRMMESYSGSRFEVTFEATHHGPI-FDIPNYYVEIGTTENEW-NDP--EALSTTVDSV 163
Query: 179 LDNYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKY----AQPVSRDVILKAIN 234
+ N + + +G+GGGHYAPK + + + GHI+ K+ +P D+ +K
Sbjct: 164 M-NPDVRDYDAFVGVGGGHYAPKIKEYFRENSVNIGHIISKHDHDALEPWEIDMAVKRT- 221
Query: 235 RFHEKVEAIYVDWKGSKGETRQLAKSLAQELGLEFI 270
+ +D KG++G R++ K A E LE I
Sbjct: 222 ---PGCKGFIMDRKGTRGNVREMVKKYADENSLELI 254
>gb|AAK42404.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 238
Score = 101 bits (249), Expect = 1e-20
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 5/223 (2%)
Query: 38 VYKKDDMVILTTNDEMIYYDYLDREIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNW 97
VY D V +T ++ ++ ++ E I SRH SK +P+LT H GN
Sbjct: 6 VYSTLDPVGVTIKKLGYRFEEINEDVTDFHYENGEAIVIFSRHESKAGIPSLTVHYPGNP 65
Query: 98 GEAMYGGKDESFAIAIPSAMKLALLKMNELNDLGWTVCYEATHHGPSELEVPSFFIEIGS 157
E + GG+ + IA P + L ++ ++ DL EATHHGP+ VP F+E+GS
Sbjct: 66 SEEIMGGEPKKLGIAYPRLLTSILREIKKI-DLNIEKTMEATHHGPTYQNVPVIFVEVGS 124
Query: 158 SEEEWVNDRAGEIIAETIVYVLDNYENSKFKVAL-GIGGGHYAPKQTKRALNSDLAFGHI 216
+E W ND + + ++ + +D + + + G GG HY+ TK L + GH+
Sbjct: 125 NETYWTNDTIVKALVDSTIRSIDKVDEIDCEYYISGFGGPHYSRLFTK--LADESCIGHV 182
Query: 217 LPK-YAQPVSRDVILKAINRFHEKVEAIYVDWKGSKGETRQLA 258
+ K Y + VI++ I + + +D SK + R +A
Sbjct: 183 ISKHYIDKLDDKVIIQTITNSVNTINKVVIDSLNSKQKERIIA 225
>gb|AAG18938.1| (AE004995) Vng0378c [Halobacterium sp. NRC-1]
Length = 390
Score = 94.4 bits (231), Expect = 1e-18
Identities = 51/144 (35%), Positives = 72/144 (49%), Gaps = 2/144 (1%)
Query: 73 IIAFASRHSSKQKLPALTTHVTGNWGEAMYGGKDESFAIAIPSAMKLALLKMNELNDLGW 132
++ SRHS P L+ H TGN+G A YGG D S A A P+A + + +
Sbjct: 1 MVVVVSRHSGDTG-PLLSAHYTGNFGAAEYGGADRSVAPACPNAHHAVVDSLRSYAPPEY 59
Query: 133 TVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYVLDNYENSKFKVALG 192
V E THHGP+ + PS F+E+GSS EW +D +A V L + +
Sbjct: 60 DVAMECTHHGPTSVGAPSMFVELGSSPAEWQDDAGARAVARA-VRDLRGVPPHGDRAVVV 118
Query: 193 IGGGHYAPKQTKRALNSDLAFGHI 216
GGGHY P+ T+ ++D GH+
Sbjct: 119 FGGGHYTPRATRILADTDWPVGHV 142
>pir||C72628 hypothetical protein APE1483 - Aeropyrum pernix (strain K1)
>gi|5105167|dbj|BAA80481.1| (AP000061) 229aa long
hypothetical protein [Aeropyrum pernix]
Length = 229
Score = 93.6 bits (229), Expect = 2e-18
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 17/227 (7%)
Query: 52 EMIYYDYLDREIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTGNWGEA-MYGGKDESFA 110
E + + LD + Q S + S+H ++ +LT H GN E GG+ A
Sbjct: 2 EAVRLEMLDEAPDPQAS----AVIVLSKHRAESGRKSLTVHHPGNPTEDNSLGGRPMELA 57
Query: 111 IAIPSAMKLALLKMNELN-DLG----WTVCYEATHHGPSELEVPSFFIEIGSSEEEWVND 165
+A P+ K L+ + + + + G + V EATHHGP+ P F E+GS+EE+W N
Sbjct: 58 VAYPALAKALLISLAKASRETGLAESYEVTLEATHHGPTTPSKPVVFAELGSTEEDWRNP 117
Query: 166 RAGEIIA---ETIVYVLDNYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYA- 221
E +A E + L E A G GG HY PK T+ L S GH +P+YA
Sbjct: 118 LGWETLALAVEEAIKTLPQIERECIPAA-GFGGTHYVPKHTRLQLESGYCIGHTIPRYAF 176
Query: 222 -QPVSRDVILKAI-NRFHEKVEAIYVDWKGSKGETRQLAKSLAQELG 266
+ V+ +V+ AI + V+ K K R++ + ++E G
Sbjct: 177 DRGVTAEVLKNAILKSYPGPARVALVEKKSLKSPQRRMVEEASEEAG 223
>gb|AAD20081.1| (AC006836) unknown protein [Arabidopsis thaliana]
Length = 361
Score = 90.9 bits (222), Expect = 1e-17
Identities = 75/242 (30%), Positives = 111/242 (44%), Gaps = 22/242 (9%)
Query: 3 VIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLDRE 62
+I+ T D AS+N L+ G+ + + ++ + ++ D LD
Sbjct: 48 LIVATTADPASINPAAALLAMPGWTAGPILPPDIKSFSNKQTRVIQHDRSIVKEDDLDLR 107
Query: 63 IEKQLSFKPEIIAFASRHSSKQKLPALTTHVTG----NWGEAMYGGKDESFAIAIPSAMK 118
E+ + + F SRH++ PALT H G GE+ G +A A+PS
Sbjct: 108 WEEATGEVVDEVIFLSRHTAVSNRPALTVHPIGVLHLKDGESPPQGGKPGWA-ALPSTRI 166
Query: 119 ----LALLKMNELNDL--GWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIA 172
L KM E + L + + EATHHGP + P+ F+EIGS+EE W A +++A
Sbjct: 167 GPWFRLLKKMAEAHGLVPEFEITLEATHHGPITNK-PTMFLEIGSTEEYWKRQDAAQVMA 225
Query: 173 ETIVYVLD----------NYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQ 222
+ L E K KV LGIGGGHYAP+ AL D+ GH+L Y+
Sbjct: 226 LLMWEGLGLGGSEEVGKWKSETGKRKVLLGIGGGHYAPRHMDIALKDDIWVGHLLSGYSL 285
Query: 223 PV 224
P+
Sbjct: 286 PM 287
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.135 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101213207
Number of Sequences: 2977
Number of extensions: 4321371
Number of successful extensions: 11053
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11034
Number of HSP's gapped (non-prelim): 9
length of query: 272
length of database: 189,106,746
effective HSP length: 57
effective length of query: 215
effective length of database: 154,992,987
effective search space: 33323492205
effective search space used: 33323492205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)