BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2350 (PAB2350) DE:Hypothetical protein
         (137 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75185 hypothetical protein PAB2350 - Pyrococcus abyssi (st...   276  9e-74
pir||B71218 hypothetical protein PH0005 - Pyrococcus horikoshii ...   226  7e-59

>pir||B75185 hypothetical protein PAB2350 - Pyrococcus abyssi (strain Orsay)
           >gi|5457438|emb|CAB48929.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 137
           
 Score =  276 bits (698), Expect = 9e-74
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MPILGHDMLRVEFEKLKIGGGRIEVSLRPTIENLRLGEMPLPSGRVKGIEVDVRYDVLYS 60
           MPILGHDMLRVEFEKLKIGGGRIEVSLRPTIENLRLGEMPLPSGRVKGIEVDVRYDVLYS
Sbjct: 1   MPILGHDMLRVEFEKLKIGGGRIEVSLRPTIENLRLGEMPLPSGRVKGIEVDVRYDVLYS 60

Query: 61  PEVARASIKLRVFYVPRDKEKIDEILDEWEEKKVLPGELVAEVVNYTTSELMPLMMHLAK 120
           PEVARASIKLRVFYVPRDKEKIDEILDEWEEKKVLPGELVAEVVNYTTSELMPLMMHLAK
Sbjct: 61  PEVARASIKLRVFYVPRDKEKIDEILDEWEEKKVLPGELVAEVVNYTTSELMPLMMHLAK 120

Query: 121 EMRIPYPVPLPRAVVKE 137
           EMRIPYPVPLPRAVVKE
Sbjct: 121 EMRIPYPVPLPRAVVKE 137


>pir||B71218 hypothetical protein PH0005 - Pyrococcus horikoshii
           >gi|3256390|dbj|BAA29073.1| (AP000001) 138aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 138
           
 Score =  226 bits (571), Expect = 7e-59
 Identities = 109/136 (80%), Positives = 126/136 (92%)

Query: 1   MPILGHDMLRVEFEKLKIGGGRIEVSLRPTIENLRLGEMPLPSGRVKGIEVDVRYDVLYS 60
           MPILGH++L++EFEKL+  GG+IEVSLRPTI NLRLGEM LPSG+VKGIEVDV Y + YS
Sbjct: 1   MPILGHNILKIEFEKLQTLGGKIEVSLRPTIRNLRLGEMHLPSGKVKGIEVDVDYIITYS 60

Query: 61  PEVARASIKLRVFYVPRDKEKIDEILDEWEEKKVLPGELVAEVVNYTTSELMPLMMHLAK 120
           PEVARASIK+RVFYVPR+KE ID ILDEWE++KVLPGELVAEVVN+TTSELMP+ M++AK
Sbjct: 61  PEVARASIKVRVFYVPRNKEDIDNILDEWEDRKVLPGELVAEVVNFTTSELMPIAMYIAK 120

Query: 121 EMRIPYPVPLPRAVVK 136
           EMRIPYPVPLPRAVV+
Sbjct: 121 EMRIPYPVPLPRAVVR 136


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.142    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51065802
Number of Sequences: 2977
Number of extensions: 2018645
Number of successful extensions: 6144
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6142
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 189,106,746
effective HSP length: 52
effective length of query: 85
effective length of database: 157,985,422
effective search space: 13428760870
effective search space used: 13428760870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)