BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2352 (nusG) DE:PUTATIVE TRANSCRIPTION ANTITERMINATION
PROTEIN NUSG.
(152 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75184 probable transcription antitermination protein nusg.... 299 1e-80
pir||G71217 probable transcription termination-antitermination f... 295 2e-79
gi|11498148 LSU ribosomal protein L24A (rpl24A) [Archaeoglobus f... 153 9e-37
pir||C69091 transcription termination factor NusG - Methanobacte... 142 2e-33
sp|Q57818|NUSG_METJA PUTATIVE TRANSCRIPTION ANTITERMINATION PROT... 141 5e-33
gb|AAG18935.1| (AE004995) transcription termination-antiterminat... 138 3e-32
emb|CAC12545.1| (AL445067) probable transcription termination-an... 121 5e-27
gb|AAK40676.1| Transcription termination antitermination factor ... 113 1e-24
sp|P96036|NUSG_SULSO PUTATIVE TRANSCRIPTION ANTITERMINATION PROT... 113 1e-24
sp|Q46494|NUSG_ACIAM PUTATIVE TRANSCRIPTION ANTITERMINATION PROT... 108 5e-23
sp|P27341|NUSG_SULAC PUTATIVE TRANSCRIPTION ANTITERMINATION PROT... 106 1e-22
pir||C72525 probable transcription termination-antitermination f... 100 8e-21
>pir||G75184 probable transcription antitermination protein nusg. PAB2352 -
Pyrococcus abyssi (strain Orsay)
>gi|5457435|emb|CAB48926.1| (AJ248283) PUTATIVE
TRANSCRIPTION ANTITERMINATION PROTEIN NUSG. [Pyrococcus
abyssi]
Length = 152
Score = 299 bits (757), Expect = 1e-80
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MGGKIFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAI 60
MGGKIFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAI
Sbjct: 1 MGGKIFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAI 60
Query: 61 RGIRHARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKD 120
RGIRHARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKD
Sbjct: 61 RGIRHARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKD 120
Query: 121 EIVVELIGAIVPIPVTVRGEYVRLISKRQKEE 152
EIVVELIGAIVPIPVTVRGEYVRLISKRQKEE
Sbjct: 121 EIVVELIGAIVPIPVTVRGEYVRLISKRQKEE 152
>pir||G71217 probable transcription termination-antitermination factor -
Pyrococcus horikoshii >gi|3256387|dbj|BAA29070.1|
(AP000001) 155aa long hypothetical transcription
termination-antitermination factor [Pyrococcus
horikoshii]
Length = 155
Score = 295 bits (747), Expect = 2e-79
Identities = 150/152 (98%), Positives = 151/152 (98%)
Query: 1 MGGKIFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAI 60
MGGKIFAVRVTQGQEENTARLIYSKV+TYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAI
Sbjct: 4 MGGKIFAVRVTQGQEENTARLIYSKVKTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAI 63
Query: 61 RGIRHARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKD 120
RGIRHARGVLP EIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKD
Sbjct: 64 RGIRHARGVLPGEIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKD 123
Query: 121 EIVVELIGAIVPIPVTVRGEYVRLISKRQKEE 152
EIVVELIGAIVPIPVTVRGEYVRLISKRQKEE
Sbjct: 124 EIVVELIGAIVPIPVTVRGEYVRLISKRQKEE 155
>gi|11498148 LSU ribosomal protein L24A (rpl24A) [Archaeoglobus fulgidus]
>gi|7450257|pir||A69317 LSU ribosomal protein L24A
(rpl24A) homolog - Archaeoglobus fulgidus
>gi|2650084|gb|AAB90698.1| (AE001067) LSU ribosomal
protein L24A (rpl24A) [Archaeoglobus fulgidus]
Length = 150
Score = 153 bits (383), Expect = 9e-37
Identities = 76/147 (51%), Positives = 104/147 (70%)
Query: 4 KIFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAIRGI 63
+ FAV+ T QE A L+ R +NL +Y+ILAP ++KGYI +EA + +AIRG+
Sbjct: 3 RFFAVKTTANQERVVANLMDMAARKHNLKVYSILAPKELKGYIIVEAETPDDLLKAIRGL 62
Query: 64 RHARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIV 123
H +GV+ EI FSEIEHFL K A + GD VE++SGPFKGE A V RVDE+K+EI
Sbjct: 63 PHVKGVVKGEISFSEIEHFLTPKKAAEQIREGDKVEIVSGPFKGEMAIVKRVDEAKNEIT 122
Query: 124 VELIGAIVPIPVTVRGEYVRLISKRQK 150
VEL+ A+VPIPVTV+ ++VR+I K+++
Sbjct: 123 VELLEAVVPIPVTVKADHVRVIDKKEE 149
>pir||C69091 transcription termination factor NusG - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622808|gb|AAB86150.1| (AE000926) transcription
termination factor NusG [Methanobacterium
thermoautotrophicum]
Length = 169
Score = 142 bits (354), Expect = 2e-33
Identities = 70/149 (46%), Positives = 103/149 (68%), Gaps = 6/149 (4%)
Query: 5 IFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
I+A++ + GQE+N AR++ KVR + I AIL P ++GYI +E+ K + +
Sbjct: 18 IYALKTSVGQEKNVARMLARKVRDSGIEINAILVPESLRGYILVESSSKIDMRNPAIRVP 77
Query: 65 HARGVLPR------EIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDES 118
H RGV+ EI F E++ FL+ +P +S ++ G IVELISGPFKGE+AKV+R+DES
Sbjct: 78 HLRGVVESKTEGEAEIDFEEVKRFLKPEPIISSIKKGSIVELISGPFKGERAKVIRIDES 137
Query: 119 KDEIVVELIGAIVPIPVTVRGEYVRLISK 147
++E+V+ELI A VPIPVTV+G+ +R+I K
Sbjct: 138 REEVVLELIEAAVPIPVTVKGDQIRIIQK 166
>sp|Q57818|NUSG_METJA PUTATIVE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
>gi|2129312|pir||D64346 transcription
termination-antitermination factor nusG homolog -
Methanococcus jannaschii >gi|1591079|gb|AAB98361.1|
(U67490) LSU ribosomal protein L24A [Methanococcus
jannaschii]
Length = 147
Score = 141 bits (351), Expect = 5e-33
Identities = 68/145 (46%), Positives = 98/145 (66%)
Query: 5 IFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
IFAVR GQE+N A L+ S+ L +Y+ILA +KGY+ +EA K V+E I+G+
Sbjct: 2 IFAVRTMVGQEKNIAGLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMP 61
Query: 65 HARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVV 124
RG++P I EIE L K + +E GD+VE+I+GPFKGE+AKV+RVD+ K+E+ +
Sbjct: 62 RVRGIVPGTIAIEEIEPLLTPKKIIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTL 121
Query: 125 ELIGAIVPIPVTVRGEYVRLISKRQ 149
EL A VPIP+T+ E V+++SK +
Sbjct: 122 ELENAAVPIPITLPVEGVKIVSKHK 146
>gb|AAG18935.1| (AE004995) transcription termination-antitermination factor; NusG
[Halobacterium sp. NRC-1]
Length = 145
Score = 138 bits (345), Expect = 3e-32
Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 3/146 (2%)
Query: 5 IFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
+FAV+ T QE+ A +I ++ I+A+LAP + Y+ +EA + + ++ + I
Sbjct: 3 VFAVKTTASQEQTVASMIANREED---TIHAVLAPDALTSYVMVEAEDTAAIERTMDEIP 59
Query: 65 HARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVV 124
HAR ++P E SE+EHFL KP V G+ DIVELI+GPFKGEKA+V R+DE KD++ V
Sbjct: 60 HARSLVPGESGISEVEHFLSPKPDVEGIAENDIVELIAGPFKGEKAQVQRIDEGKDQVTV 119
Query: 125 ELIGAIVPIPVTVRGEYVRLISKRQK 150
EL A VPIPVTVRG+ +R++ ++
Sbjct: 120 ELYEATVPIPVTVRGDQIRVLDSEER 145
>emb|CAC12545.1| (AL445067) probable transcription termination-antitermination
factor related protein [Thermoplasma acidophilum]
Length = 299
Score = 121 bits (300), Expect = 5e-27
Identities = 55/111 (49%), Positives = 79/111 (70%)
Query: 33 IYAILAPSKVKGYIFIEAPEKSVVDEAIRGIRHARGVLPREIPFSEIEHFLEEKPAVSGL 92
+YAI+AP ++KGYIF+E + R IR +G++ +I EI H+L KPAVSGL
Sbjct: 186 VYAIMAPYEIKGYIFVETMHPDRISYLARDIRGYKGMVSGKIDLEEIAHYLTPKPAVSGL 245
Query: 93 EPGDIVELISGPFKGEKAKVVRVDESKDEIVVELIGAIVPIPVTVRGEYVR 143
E G +VEL+ GPFKGEKAK++ +D K+E+ V+L+ ++VPIPVTV+ E +R
Sbjct: 246 ELGSLVELVEGPFKGEKAKIISIDSVKEEVTVQLVESMVPIPVTVKAESIR 296
>gb|AAK40676.1| Transcription termination antitermination factor (nusG) [Sulfolobus
solfataricus]
Length = 157
Score = 113 bits (279), Expect = 1e-24
Identities = 57/144 (39%), Positives = 95/144 (65%), Gaps = 2/144 (1%)
Query: 6 FAVRVTQGQEENTARLIYSKVRTYNLP-IYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
+A++V GQE N A ++ +++T N+ IYAI+ P +KGY+ +EA +V I GIR
Sbjct: 15 YAIKVVGGQEINVALMLEERIKTNNIKGIYAIIVPPNLKGYVVLEAEGLHIVKPLIAGIR 74
Query: 65 HARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVV 124
+ARG+ +P EI + K ++PGD+VE+ISGPF+G +A+V+RV+E+K E+V+
Sbjct: 75 NARGLAQGLLPRDEILKIVSRKTVGPTVKPGDVVEVISGPFRGTQAQVIRVEEAKGEVVL 134
Query: 125 ELIGAIVPIPVTVRGEYVRLISKR 148
++ + P+ VTV + ++ +SKR
Sbjct: 135 NILESAFPLQVTVPLDQIK-VSKR 157
>sp|P96036|NUSG_SULSO PUTATIVE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
>gi|1814426|gb|AAB99523.1| (U85262) transcription
termination-antitermination factor [Sulfolobus
solfataricus]
Length = 152
Score = 113 bits (279), Expect = 1e-24
Identities = 57/144 (39%), Positives = 95/144 (65%), Gaps = 2/144 (1%)
Query: 6 FAVRVTQGQEENTARLIYSKVRTYNLP-IYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
+A++V GQE N A ++ +++T N+ IYAI+ P +KGY+ +EA +V I GIR
Sbjct: 10 YAIKVVGGQEINVALMLEERIKTNNIKGIYAIIVPPNLKGYVVLEAEGLHIVKPLIAGIR 69
Query: 65 HARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVV 124
+ARG+ +P EI + K ++PGD+VE+ISGPF+G +A+V+RV+E+K E+V+
Sbjct: 70 NARGLAQGLLPRDEILKIVSRKTVGPTVKPGDVVEVISGPFRGTQAQVIRVEEAKGEVVL 129
Query: 125 ELIGAIVPIPVTVRGEYVRLISKR 148
++ + P+ VTV + ++ +SKR
Sbjct: 130 NILESAFPLQVTVPLDQIK-VSKR 152
>sp|Q46494|NUSG_ACIAM PUTATIVE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
>gi|11280202|pir||T48924 probable transcription
termination-antitermination protein nusG [imported] -
Desulfurolobus ambivalens >gi|1217623|emb|CAA65235.1|
(X95989) nusG protein [Acidianus ambivalens]
Length = 152
Score = 108 bits (266), Expect = 5e-23
Identities = 53/143 (37%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 6 FAVRVTQGQEENTARLIYSKVRTYNLP-IYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
+AV+VT GQE + ++ + +T N+P IY+I+ P +KGY+ +EA VV I GIR
Sbjct: 9 YAVKVTGGQEVSVGLMLEERAKTNNIPEIYSIIVPPGLKGYVIVEASGPHVVKLLIAGIR 68
Query: 65 HARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVV 124
H RG+ +P I + +K ++ GD+VE++SGPF+G +A+VV+V E K E+V+
Sbjct: 69 HVRGIAQGLVPKDHIVKMVSKKVTGPTIKEGDLVEVVSGPFRGMQAQVVKVTEGKGEVVL 128
Query: 125 ELIGAIVPIPVTVRGEYVRLISK 147
++ + P+ VT+ + V+ + K
Sbjct: 129 NILESAFPLQVTIPVDQVKPVKK 151
>sp|P27341|NUSG_SULAC PUTATIVE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
>gi|99272|pir||S16484 hypothetical protein 3 -
Sulfolobus solfataricus >gi|1076160|pir||S53705
hypothetical protein 5 - Sulfolobus acidocaldarius
>gi|48885|emb|CAA41431.1| (X58538) ORF 3 [Sulfolobus
solfataricus] >gi|453445|emb|CAA54645.1| (X77509) ao5sac
[Sulfolobus acidocaldarius] >gi|1095513|prf||2109236H
ORF [Sulfolobus acidocaldarius]
Length = 152
Score = 106 bits (263), Expect = 1e-22
Identities = 52/143 (36%), Positives = 92/143 (63%), Gaps = 1/143 (0%)
Query: 6 FAVRVTQGQEENTARLIYSKVRTYNL-PIYAILAPSKVKGYIFIEAPEKSVVDEAIRGIR 64
+ +RVT GQE N A ++ +++T N+ I++++ P +KGY+ +EA VV GIR
Sbjct: 10 YVLRVTGGQEINVALILEERIKTNNINEIFSVVVPPNIKGYVILEATGPHVVKLISSGIR 69
Query: 65 HARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIVV 124
H +GV I ++ F+ + A+ ++ GD+VE+ISGPF+G +A+VVRV+ +K+E+V+
Sbjct: 70 HVKGVAHGLIQKEDVTKFVSKSVALPAVKEGDLVEVISGPFRGMQAQVVRVESTKNEVVL 129
Query: 125 ELIGAIVPIPVTVRGEYVRLISK 147
++ + P+ VTV E V+ + +
Sbjct: 130 NILESSYPVQVTVPLEQVKPVKR 152
>pir||C72525 probable transcription termination-antitermination factor APE2176 -
Aeropyrum pernix (strain K1) >gi|5105875|dbj|BAA81187.1|
(AP000063) 152aa long hypothetical transcription
termination-antitermination factor [Aeropyrum pernix]
Length = 152
Score = 100 bits (247), Expect = 8e-21
Identities = 47/144 (32%), Positives = 85/144 (58%)
Query: 4 KIFAVRVTQGQEENTARLIYSKVRTYNLPIYAILAPSKVKGYIFIEAPEKSVVDEAIRGI 63
+ +A+ VT G E N A +I + R L I +I+ P ++KGY+ +EA + V +A RG+
Sbjct: 9 RFYAILVTSGAEVNVATIIAERARALGLDIRSIIVPPRIKGYVILEAHDPGDVYDATRGL 68
Query: 64 RHARGVLPREIPFSEIEHFLEEKPAVSGLEPGDIVELISGPFKGEKAKVVRVDESKDEIV 123
RH + P + F E+ ++ + + L+PG +VE+++G FKG KA+V+ V++SK ++
Sbjct: 69 RHVKRRRPLILKFEEVMKLVKPEVEIPALKPGQVVEIVAGAFKGMKARVIDVNQSKGQVT 128
Query: 124 VELIGAIVPIPVTVRGEYVRLISK 147
V L+ + T+ + VR + +
Sbjct: 129 VSLLEPLFRATATIPIDEVRPVEE 152
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.140 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55348928
Number of Sequences: 2977
Number of extensions: 2274226
Number of successful extensions: 5833
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5817
Number of HSP's gapped (non-prelim): 12
length of query: 152
length of database: 189,106,746
effective HSP length: 55
effective length of query: 97
effective length of database: 156,189,961
effective search space: 15150426217
effective search space used: 15150426217
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)