BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2353 (rpl11P) DE:LSU ribosomal protein L11P (rpl11P)
(164 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75184 lsu ribosomal protein l11p (rpl11p) PAB2353 - Pyroco... 323 9e-88
sp|O57779|RL11_PYRHO 50S RIBOSOMAL PROTEIN L11P >gi|7440802|pir|... 317 3e-86
sp|P54030|RL11_METJA 50S RIBOSOMAL PROTEIN L11P >gi|2119134|pir|... 236 1e-61
sp|O27715|RL11_METTH 50S RIBOSOMAL PROTEIN L11P >gi|7440803|pir|... 207 5e-53
gi|11498149 LSU ribosomal protein L11P (rpl11P) [Archaeoglobus f... 206 1e-52
emb|CAC11505.1| (AL445064) probable 50S ribosomal protein L11 [T... 190 9e-48
sp|P96037|RL11_SULSO 50S RIBOSOMAL PROTEIN L11P >gi|1814427|gb|A... 177 5e-44
gb|AAK40675.1| LSU ribosomal protein L11AB (rpl11AB) [Sulfolobus... 177 7e-44
sp|P35025|RL11_SULAC 50S RIBOSOMAL PROTEIN L11P >gi|1076168|pir|... 174 4e-43
sp|P14122|RL11_HALMA 50S RIBOSOMAL PROTEIN L11P (HMAL11) >gi|712... 163 1e-39
sp|P41200|RL11_HALVO 50S RIBOSOMAL PROTEIN L11P (L11E) >gi|42172... 161 6e-39
sp|P05969|RL11_HALCU 50S RIBOSOMAL PROTEIN L11P >gi|71211|pir||R... 153 9e-37
sp|P52862|RL11_ACIAM 50S RIBOSOMAL PROTEIN L11P >gi|11276743|pir... 149 2e-35
pdb|1MMS|A Chain A, Crystal Structure Of The Ribosomal Protein L... 110 1e-23
pdb|487D|L Chain L, Seven Ribosomal Proteins Fitted To A Cryo-El... 110 1e-23
pdb|1EG0|K Chain K, Fitting Of Components With Known Structure I... 110 1e-23
sp|P29395|RL11_THEMA 50S RIBOSOMAL PROTEIN L11 >gi|71210|pir||R5... 110 1e-23
sp|Q07975|RL11_STRSQ 50S RIBOSOMAL PROTEIN L11 >gi|541505|pir||S... 108 4e-23
gb|AAF36507.1|AF130462_4 (AF130462) 50S ribosomal protein L11 [C... 107 6e-23
sp|O67758|RL11_AQUAE 50S RIBOSOMAL PROTEIN L11 >gi|7440797|pir||... 106 1e-22
sp|P36238|RL11_THETH 50S RIBOSOMAL PROTEIN L11 >gi|2120599|pir||... 106 1e-22
sp|P27310|RL11_STRVG 50S RIBOSOMAL PROTEIN L11 >gi|285394|pir||B... 106 1e-22
sp|P36254|RL11_STACA 50S RIBOSOMAL PROTEIN L11 >gi|487096|pir||S... 105 2e-22
prf||2004301A ribosomal protein L11 [Thermus aquaticus thermophi... 104 6e-22
pir||C81685 ribosomal protein L11 TC0593 [imported] - Chlamydia ... 104 6e-22
sp|O87733|RL11_STRLA 50S RIBOSOMAL PROTEIN L11 >gi|3355885|dbj|B... 104 7e-22
sp|P36258|RL11_STRGR 50S RIBOSOMAL PROTEIN L11 >gi|322285|pir||S... 102 2e-21
sp|O84321|RL11_CHLTR 50S RIBOSOMAL PROTEIN L11 >gi|7440798|pir||... 102 2e-21
sp|Q9Z9A4|RL11_CHLPN 50S RIBOSOMAL PROTEIN L11 >gi|7440801|pir||... 102 2e-21
pir||G75323 ribosomal protein L11 - Deinococcus radiodurans (str... 102 2e-21
sp|O75000|RL12_SCHPO 60S RIBOSOMAL PROTEIN L12 >gi|7490011|pir||... 102 3e-21
sp|O83265|RL11_TREPA 50S RIBOSOMAL PROTEIN L11 >gi|7440793|pir||... 102 3e-21
sp|P56037|RL11_HELPY 50S RIBOSOMAL PROTEIN L11 >gi|7440794|pir||... 101 4e-21
pir||H82007 50S ribosomal protein L11 NMA0146 [imported] - Neiss... 101 4e-21
sp|O87085|RL11_STRAT 50S RIBOSOMAL PROTEIN L11 >gi|3355894|dbj|B... 101 5e-21
pir||D81235 50S ribosomal protein L11 NMB0127 [imported] - Neiss... 101 6e-21
sp|O06443|RL11_STAAU 50S RIBOSOMAL PROTEIN L11 >gi|2078378|gb|AA... 100 8e-21
sp|Q06796|RL11_BACSU 50S RIBOSOMAL PROTEIN L11 (BL11) >gi|481872... 100 1e-20
sp|P48954|RL11_STRCO 50S RIBOSOMAL PROTEIN L11 >gi|1084256|pir||... 99 2e-20
sp|P56210|RL11_BACST 50S RIBOSOMAL PROTEIN L11 >gi|1361387|pir||... 99 2e-20
gi|11467314 ribosomal protein L11 [Cyanophora paradoxa] >gi|1350... 99 2e-20
dbj|BAB03838.1| (AP001507) ribosomal protein L11 (BL11) [Bacillu... 99 2e-20
pir||T50076 probable 50S ribosomal protein L11 [imported] - fiss... 99 3e-20
gi|11467611 ribosomal protein L11 [Guillardia theta] >gi|6093977... 98 4e-20
sp|P96931|RL11_MYCTU 50S RIBOSOMAL PROTEIN L11 >gi|7440799|pir||... 97 9e-20
sp|P36237|RL11_SYNY3 50S RIBOSOMAL PROTEIN L11 >gi|1075628|pir||... 96 2e-19
sp|Q9Y9W5|RL11_AERPE 50S RIBOSOMAL PROTEIN L11P >gi|7521360|pir|... 96 2e-19
gb|AAF31280.1|AC006424_9 (AC006424) Very similar to Spinacia ole... 96 2e-19
gi|11465803 50S ribosomal protein L11 [Porphyra purpurea] >gi|17... 96 3e-19
dbj|BAB09840.1| (AB005246) 60S ribosomal protein L12 [Arabidopsi... 96 3e-19
gi|7705618 CGI-113 protein [Homo sapiens] >gi|4929695|gb|AAD3410... 95 5e-19
sp|P44351|RL11_HAEIN 50S RIBOSOMAL PROTEIN L11 >gi|1075230|pir||... 94 6e-19
gi|11465493 unknown; 50S ribosomal protein L11 [Cyanidium caldar... 94 6e-19
pir||E81392 50S ribosomal protein L11 Cj0474 [imported] - Campyl... 94 8e-19
pir||F82531 50S ribosomal protein L11 XF2637 [imported] - Xylell... 94 8e-19
sp|P31164|RK11_SPIOL 50S RIBOSOMAL PROTEIN L11, CHLOROPLAST PREC... 94 1e-18
sp|P23358|RL12_RAT 60S RIBOSOMAL PROTEIN L12 >gi|71213|pir||R7RT... 93 2e-18
gi|4506597 ribosomal protein L12 [Homo sapiens] >gi|266921|sp|P3... 93 2e-18
gi|6677769 ribosomal protein L12 [Mus musculus] >gi|548745|sp|P3... 92 2e-18
pir||T45883 60S RIBOSOMAL PROTEIN L12-like - Arabidopsis thalian... 92 2e-18
gb|AAD18140.1| (AC006260) 60S ribosomal protein L12 [Arabidopsis... 92 3e-18
emb|CAC01510.1| (AL132821) dJ999L4.1 (ribosomal protein L12) [Ho... 92 4e-18
gi|11429886 similar to ribosomal protein L12 (H. sapiens) [Homo ... 91 5e-18
sp|P50884|RL12_CHLRE 60S RIBOSOMAL PROTEIN L12 >gi|7440807|pir||... 90 9e-18
dbj|BAA22445.1| (D87846) ribosomal protein L11 [Streptomyces gri... 90 9e-18
pir||B82338 ribosomal protein L11 VC0324 [imported] - Vibrio cho... 90 1e-17
dbj|BAB04128.1| (AP001508) ribosomal protein L11 (BL11) [Bacillu... 90 1e-17
sp|O50003|RL12_PRUAR 60S RIBOSOMAL PROTEIN L12 >gi|2677830|gb|AA... 89 2e-17
gb|AAF47152.1| (AE003462) CG3195 gene product [Drosophila melano... 88 5e-17
sp|P10055|RL11_PROVU 50S RIBOSOMAL PROTEIN L11 >gi|71209|pir||R5... 88 6e-17
sp|P09763|RL11_SERMA 50S RIBOSOMAL PROTEIN L11 >gi|71208|pir||R5... 88 6e-17
sp|P36250|RL11_CGDAB 50S RIBOSOMAL PROTEIN L11 >gi|144456|gb|AAA... 88 6e-17
pir||C83111 50S ribosomal protein L11 PA4274 [imported] - Pseudo... 88 6e-17
emb|CAA16156.1| (AL021366) cICK0721Q.2 (60S Ribosomal Protein L1... 87 8e-17
emb|CAB88388.1| (AJ252184) L12 ribosomal protein [Hydra vulgaris] 87 1e-16
sp|P02409|RL11_ECOLI 50S RIBOSOMAL PROTEIN L11 >gi|71207|pir||R5... 87 1e-16
sp|O62290|RL12_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L12 >gi|7505... 87 1e-16
sp|P57150|RL11_BUCAI 50S RIBOSOMAL PROTEIN L11 >gi|10038730|dbj|... 87 1e-16
gi|11466627 ribosomal protein L11 [Malawimonas jakobiformis] >gi... 87 1e-16
sp|O51354|RL11_BORBU 50S RIBOSOMAL PROTEIN L11 >gi|7440795|pir||... 86 2e-16
emb|CAA23621.1| (V00339) rplK (L11) [Escherichia coli] 85 4e-16
gb|AAC43081.1| (U00006) 50S ribosomal subunit protein L11 [Esche... 85 4e-16
gi|11467549 50S ribosomal protein L11 [Odontella sinensis] >gi|1... 82 4e-15
gi|11441233 CGI-113 protein [Homo sapiens] 82 4e-15
gi|6320625 Ribosomal protein L12B (L15B) (YL23); Rpl12bp [Saccha... 81 6e-15
gi|6324144 mitochondrial ribosomal protein of the large subunit;... 80 2e-14
emb|CAA60718.1| (X87296) ribosomal protein L11 [Arabidopsis thal... 80 2e-14
sp|Q9ZE24|RL11_RICPR 50S RIBOSOMAL PROTEIN L11 >gi|7440792|pir||... 77 9e-14
sp|P47327|RL11_MYCGE 50S RIBOSOMAL PROTEIN L11 >gi|1361792|pir||... 76 3e-13
pir||T41746 ribosomal protein L11 homolog - Arabidopsis thaliana... 76 3e-13
sp|P75550|RL11_MYCPN 50S RIBOSOMAL PROTEIN L11 >gi|2146591|pir||... 75 5e-13
pir||H82876 ribosomal protein L11 UU541 [imported] - Ureaplasma ... 74 8e-13
sp|P34264|YKAE_CAEEL PROBABLE RIBOSOMAL PROTEIN B0303.15 IN CHRO... 74 1e-12
gi|11466497 ribosomal protein L11 [Reclinomonas americana] >gi|7... 73 1e-12
gb|AAC84136.1| (AF101423) ribosomal protein L12 [Cichorium intybus] 72 3e-12
gb|AAF55063.1| (AE003705) CG3351 gene product [Drosophila melano... 68 4e-11
>pir||F75184 lsu ribosomal protein l11p (rpl11p) PAB2353 - Pyrococcus abyssi
(strain Orsay) >gi|5457434|emb|CAB48925.1| (AJ248283)
LSU ribosomal protein L11P (rpl11P) [Pyrococcus abyssi]
Length = 164
Score = 323 bits (818), Expect = 9e-88
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV
Sbjct: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK
Sbjct: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE
Sbjct: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
>sp|O57779|RL11_PYRHO 50S RIBOSOMAL PROTEIN L11P >gi|7440802|pir||F71217 probable
ribosomal protein L11 - Pyrococcus horikoshii
>gi|3256386|dbj|BAA29069.1| (AP000001) 164aa long
hypothetical 50S ribosomal protein L11 [Pyrococcus
horikoshii]
Length = 164
Score = 317 bits (805), Expect = 3e-86
Identities = 162/164 (98%), Positives = 163/164 (98%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV
Sbjct: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKR+QMLALTLK
Sbjct: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRSQMLALTLK 120
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
AAAKEVIGTALSMGVTVEGKDPR VQREIDEGVYDELFEKAEKE
Sbjct: 121 AAAKEVIGTALSMGVTVEGKDPRIVQREIDEGVYDELFEKAEKE 164
>sp|P54030|RL11_METJA 50S RIBOSOMAL PROTEIN L11P >gi|2119134|pir||E64346 ribosomal
protein L11 - Methanococcus jannaschii
>gi|1591080|gb|AAB98362.1| (U67490) LSU ribosomal
protein L11P (rplK) [Methanococcus jannaschii]
Length = 161
Score = 236 bits (596), Expect = 1e-61
Identities = 114/160 (71%), Positives = 138/160 (86%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
M K+VVEVLV GG+AT GPPLGPAIGPLG+NV QVV +INE TK++ GMQVPVK+IVD
Sbjct: 1 MAKEVVEVLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKTKDYEGMQVPVKVIVDTE 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
T++FEIEVG+PPT+ LIKKELG+E + EP+H +VGNLT+EQVIKIAKMK++ ML+ TLK
Sbjct: 61 TRKFEIEVGIPPTTALIKKELGIETAAHEPRHEVVGNLTLEQVIKIAKMKKDAMLSYTLK 120
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEK 160
A KEV+GT SMGVTVEGKDP+EVQ+EID GVYDE F++
Sbjct: 121 NAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAGVYDEYFKE 160
>sp|O27715|RL11_METTH 50S RIBOSOMAL PROTEIN L11P >gi|7440803|pir||D69091 ribosomal
protein L11 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622809|gb|AAB86151.1| (AE000926)
ribosomal protein L12 (E.coli L11) [Methanobacterium
thermoautotrophicum]
Length = 160
Score = 207 bits (522), Expect = 5e-53
Identities = 97/157 (61%), Positives = 128/157 (80%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
M K+ VE+L++GGKATPGPPLGPAIGPLG+N+ QVV++IN T +F GM+VPVKIIVD
Sbjct: 1 MAKETVEILIDGGKATPGPPLGPAIGPLGINMMQVVEEINRKTADFEGMKVPVKIIVDTD 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
T+ FE+EVG PPT+ LI EL LEKGS +P + + +++MEQV+KIA+MK + +L+ K
Sbjct: 61 TRDFEVEVGTPPTTALIMDELKLEKGSQDPGMDKIADISMEQVLKIARMKFDALLSNDYK 120
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDEL 157
A KE++GT +SMG+TV GKDPREVQRE+D+GVYD+L
Sbjct: 121 RAVKEIMGTCVSMGITVNGKDPREVQREVDQGVYDDL 157
>gi|11498149 LSU ribosomal protein L11P (rpl11P) [Archaeoglobus fulgidus]
>gi|3914670|sp|O29712|RL11_ARCFU 50S RIBOSOMAL PROTEIN
L11P >gi|7440804|pir||B69317 LSU ribosomal protein L11P
(rpl11P) homolog - Archaeoglobus fulgidus
>gi|2650083|gb|AAB90697.1| (AE001067) LSU ribosomal
protein L11P (rpl11P) [Archaeoglobus fulgidus]
Length = 157
Score = 206 bits (518), Expect = 1e-52
Identities = 101/149 (67%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
QVVEVLV GG+A+PGPPLGPAIGPLGLNVKQVVDKINEATK++ G+ VPVKIIV +
Sbjct: 3 QVVEVLVPGGQASPGPPLGPAIGPLGLNVKQVVDKINEATKDYEGLSVPVKIIVKD-DRS 61
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
FEIEVG+PP S LIK+ELG+EKG+ P +VGNLTMEQ++ IA++KR Q L+ TLK
Sbjct: 62 FEIEVGIPPVSALIKRELGIEKGASNPGREVVGNLTMEQLLNIARIKRQQSLSYTLKEVV 121
Query: 124 KEVIGTALSMGVTVEGKDPREVQREIDEG 152
KEV+GT SMG+TVEGK P+E+ R I+EG
Sbjct: 122 KEVLGTCNSMGITVEGKSPKELTRMIEEG 150
>emb|CAC11505.1| (AL445064) probable 50S ribosomal protein L11 [Thermoplasma
acidophilum]
Length = 152
Score = 190 bits (477), Expect = 9e-48
Identities = 91/148 (61%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKI-IVDPVTKQF 64
++ +VEGGKAT GPP+GPA+GPLGLNV QVV +INE TKEF GM+VPV I +VDP TK++
Sbjct: 1 MKTMVEGGKATTGPPIGPALGPLGLNVAQVVKEINEKTKEFQGMRVPVTITVVDPETKKY 60
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
EI VG+PPTS L+KK+LG+EKG+ + K I GN T++Q++ +AK K MLA LKAA
Sbjct: 61 EITVGIPPTSALLKKKLGIEKGAAKRKEAIAGNATLDQIVDVAKTKMASMLASDLKAATL 120
Query: 125 EVIGTALSMGVTVEGKDPREVQREIDEG 152
EV+GT +SMG+ V+GKDP+EVQR+I G
Sbjct: 121 EVLGTCVSMGINVDGKDPKEVQRQIKAG 148
>sp|P96037|RL11_SULSO 50S RIBOSOMAL PROTEIN L11P >gi|1814427|gb|AAB99524.1| (U85262)
ribosomal protein L11 [Sulfolobus solfataricus]
Length = 170
Score = 177 bits (445), Expect = 5e-44
Identities = 84/164 (51%), Positives = 118/164 (71%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
M + ++++VEGG PGPPL P + LGLNV +VV K+NEAT F GM VPV I VD
Sbjct: 1 MPIKTIKIMVEGGNVKPGPPLAPTLSQLGLNVGEVVKKLNEATSSFKGMSVPVTIEVDSS 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
TK++EI+VG+P T+ L+ KE G + SG+P H +GNL++EQVIKIA MK+ + +LK
Sbjct: 61 TKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKIGNLSLEQVIKIAIMKKPGLTTKSLK 120
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
AA K ++GTA S+G+TV+ +DP+E+ +E++EG YD+L K E E
Sbjct: 121 AALKSMLGTAKSIGLTVDNRDPKELVKEVEEGKYDDLLAKYENE 164
>gb|AAK40675.1| LSU ribosomal protein L11AB (rpl11AB) [Sulfolobus solfataricus]
Length = 173
Score = 177 bits (444), Expect = 7e-44
Identities = 83/161 (51%), Positives = 117/161 (72%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+ ++++VEGG PGPPL P + LGLNV +VV K+NEAT F GM VPV I VD TK+
Sbjct: 7 KTIKIMVEGGNVKPGPPLAPTLSQLGLNVGEVVKKLNEATSSFKGMSVPVTIEVDSSTKK 66
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
+EI+VG+P T+ L+ KE G + SG+P H +GNL++EQVIKIA MK+ + +LKAA
Sbjct: 67 YEIKVGIPTTTALLLKEAGASEPSGDPAHKKIGNLSLEQVIKIAIMKKPGLTTKSLKAAL 126
Query: 124 KEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
K ++GTA S+G+TV+ +DP+E+ +E++EG YD+L K E E
Sbjct: 127 KSMLGTAKSIGLTVDNRDPKELVKEVEEGKYDDLLAKYENE 167
>sp|P35025|RL11_SULAC 50S RIBOSOMAL PROTEIN L11P >gi|1076168|pir||S53648 ribosomal
protein L11 - Sulfolobus acidocaldarius
>gi|763027|emb|CAA41762.1| (X59038) ribosomal protein
L11 [Sulfolobus solfataricus]
Length = 170
Score = 174 bits (437), Expect = 4e-43
Identities = 81/164 (49%), Positives = 119/164 (72%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
M + ++++VEGG A PGPPLGP + LGLNV++VV KIN+ T +F GM VPV I +D
Sbjct: 1 MPTKTIKIMVEGGSAKPGPPLGPTLSQLGLNVQEVVKKINDVTAQFKGMSVPVTIEIDSS 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
TK+++I+VGVP T+ L+ K + ++ SG+P H +GNL +EQ+ IA K+ Q+ A TL
Sbjct: 61 TKKYDIKVGVPTTTSLLLKAINAQEPSGDPAHKKIGNLDLEQIADIAIKKKPQLSAKTLT 120
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
AA K ++GTA S+G+TVEGKDP++V +EID+G Y++L E++
Sbjct: 121 AAIKSLLGTARSIGITVEGKDPKDVIKEIDQGKYNDLLTNYEQK 164
>sp|P14122|RL11_HALMA 50S RIBOSOMAL PROTEIN L11P (HMAL11) >gi|71212|pir||R5HS11 ribosomal
protein L11 [validated] - Haloarcula marismortui
>gi|43603|emb|CAA35793.1| (X51430) L11 ribosomal protein
(AA 1-162) [Haloarcula marismortui]
Length = 162
Score = 163 bits (408), Expect = 1e-39
Identities = 80/153 (52%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+EVLV GG+A PGPPLGP +GP ++V+ VV +IN+ T F G +VPV + D FE
Sbjct: 5 IEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDD-DGSFE 63
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
IEVGVPPT++LIK E G E GSGEP+ + V +L+++QV +IA+ K +L+ L AAKE
Sbjct: 64 IEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKE 123
Query: 126 VIGTALSMGVTVEGKDPREVQREIDEGVYDELF 158
V+GT S+GVT+EG++PRE + ID G YD++F
Sbjct: 124 VVGTCTSLGVTIEGENPREFKERIDAGEYDDVF 156
>sp|P41200|RL11_HALVO 50S RIBOSOMAL PROTEIN L11P (L11E) >gi|421722|pir||S34134 ribosomal
protein L11 - Haloferax volcanii
>gi|313016|emb|CAA41722.1| (X58924) ribosomal protein
L11e [Haloferax volcanii]
Length = 159
Score = 161 bits (402), Expect = 6e-39
Identities = 78/154 (50%), Positives = 110/154 (70%), Gaps = 1/154 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+EVLV GGKA PGPPLGP +GP ++V+ VV+ IN+ T F GM+VPV + D F
Sbjct: 5 IEVLVPGGKANPGPPLGPELGPTPVDVQDVVNDINDQTAAFDGMEVPVTVEYDD-DGSFS 63
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
IEVGVPPT+ LIK E+G + GSGEP+ N V ++++EQ+ K+A+ K + +L+ LK A+KE
Sbjct: 64 IEVGVPPTAALIKDEVGFDTGSGEPQENFVADMSIEQLKKVAEQKSSDLLSYDLKNASKE 123
Query: 126 VIGTALSMGVTVEGKDPREVQREIDEGVYDELFE 159
V GT S+GVT+EG+D R ++ ID G +D+ F+
Sbjct: 124 VAGTCASLGVTIEGEDARTFKQRIDGGDFDDYFD 157
>sp|P05969|RL11_HALCU 50S RIBOSOMAL PROTEIN L11P >gi|71211|pir||R5HSC1 ribosomal protein
L11 [validated] - Halobacterium salinarum
>gi|43452|emb|CAA33178.1| (X15078) L11e ribosomal
protein [Halobacterium cutirubrum]
>gi|10580653|gb|AAG19501.1| (AE005042) 50S ribosomal
protein L11P; Rpl11p [Halobacterium sp. NRC-1]
Length = 163
Score = 153 bits (383), Expect = 9e-37
Identities = 75/154 (48%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+ +EVLV GG+A PGPPLGP +GP ++V+ VV +IN+ T+ F G +VPV I +
Sbjct: 3 ETIEVLVAGGQADPGPPLGPELGPTPVDVQAVVQEINDQTEAFDGTEVPVTIEYED-DGS 61
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F IEVGVPPT+ L+K E G + GSGEP+ N V +L++EQ+ IA+ K+ +LA + AA
Sbjct: 62 FSIEVGVPPTAALVKDEAGFDTGSGEPQENFVADLSIEQLKTIAEQKKPDLLAYDARNAA 121
Query: 124 KEVIGTALSMGVTVEGKDPREVQREIDEGVYDEL 157
KEV GT S+GVT+EG+D R +D+G YD++
Sbjct: 122 KEVAGTCASLGVTIEGEDARTFNERVDDGDYDDV 155
>sp|P52862|RL11_ACIAM 50S RIBOSOMAL PROTEIN L11P >gi|11276743|pir||T48925 ribosomal L1
protein [imported] - Desulfurolobus ambivalens
(fragment) >gi|1217624|emb|CAA65236.1| (X95989)
ribosomal L1 protein [Acidianus ambivalens]
Length = 141
Score = 149 bits (372), Expect = 2e-35
Identities = 72/141 (51%), Positives = 98/141 (69%)
Query: 1 MKKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPV 60
M K+ ++++VEGG PGPPLGP + L LNV +VV KINEAT +F GM VPV I VD
Sbjct: 1 MPKKTIKIVVEGGNVKPGPPLGPTLSQLKLNVGEVVKKINEATAQFKGMTVPVTIDVDLD 60
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
TK+FEI VG+P TS L+ K+ G E SG+P H + N+++E +I +A K+ + A TLK
Sbjct: 61 TKEFEISVGIPTTSSLLLKKAGAEAPSGDPAHKKIANVSLEDIIDVAITKKPSLTAKTLK 120
Query: 121 AAAKEVIGTALSMGVTVEGKD 141
AA K ++GTA +G+TV+ KD
Sbjct: 121 AAVKSILGTARQIGLTVDKKD 141
>pdb|1MMS|A Chain A, Crystal Structure Of The Ribosomal Protein L11-Rna Complex
>gi|7767083|pdb|1MMS|B Chain B, Crystal Structure Of The
Ribosomal Protein L11-Rna Complex
Length = 140
Score = 110 bits (272), Expect = 1e-23
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+++ + GKATP PP+GPA+G G+N+ + + N T + AGM +PV I V K F
Sbjct: 8 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYE-DKSFT 66
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
+ PP S L+KK G+EKGS EPK IVG +T +Q+ +IAK K + A +L+AA K
Sbjct: 67 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKI 126
Query: 126 VIGTALSMGVTV 137
+ GTA SMG+ V
Sbjct: 127 IEGTAKSMGIEV 138
>pdb|487D|L Chain L, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 133
Score = 110 bits (272), Expect = 1e-23
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+++ + GKATP PP+GPA+G G+N+ + + N T + AGM +PV I V K F
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYE-DKSFT 60
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
+ PP S L+KK G+EKGS EPK IVG +T +Q+ +IAK K + A +L+AA K
Sbjct: 61 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKI 120
Query: 126 VIGTALSMGVTV 137
+ GTA SMG+ V
Sbjct: 121 IEGTAKSMGIEV 132
>pdb|1EG0|K Chain K, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 140
Score = 110 bits (272), Expect = 1e-23
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+++ + GKATP PP+GPA+G G+N+ + + N T + AGM +PV I V K F
Sbjct: 9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYE-DKSFT 67
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
+ PP S L+KK G+EKGS EPK IVG +T +Q+ +IAK K + A +L+AA K
Sbjct: 68 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKI 127
Query: 126 VIGTALSMGVTV 137
+ GTA SMG+ V
Sbjct: 128 IEGTAKSMGIEV 139
>sp|P29395|RL11_THEMA 50S RIBOSOMAL PROTEIN L11 >gi|71210|pir||R5HG11 ribosomal protein
L11 - Thermotoga maritima (strain MSB8)
>gi|48184|emb|CAA77859.1| (Z11839) ribosomal protein L11
[Thermotoga maritima]
>gi|4980960|gb|AAD35537.1|AE001723_7 (AE001723)
ribosomal protein L11 [Thermotoga maritima]
Length = 141
Score = 110 bits (272), Expect = 1e-23
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+++ + GKATP PP+GPA+G G+N+ + + N T + AGM +PV I V K F
Sbjct: 9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYE-DKSFT 67
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
+ PP S L+KK G+EKGS EPK IVG +T +Q+ +IAK K + A +L+AA K
Sbjct: 68 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKI 127
Query: 126 VIGTALSMGVTV 137
+ GTA SMG+ V
Sbjct: 128 IEGTAKSMGIEV 139
>sp|Q07975|RL11_STRSQ 50S RIBOSOMAL PROTEIN L11 >gi|541505|pir||S40772 ribosomal protein
L11 - Streptomyces sp >gi|303918|dbj|BAA03346.1|
(D14451) L11 [Streptomyces sp.]
Length = 144
Score = 108 bits (267), Expect = 4e-23
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ ++ G A P PP+GPA+G G+N+ + N AT+ GM VPV+I V + F
Sbjct: 11 LIKLQIKAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGMVVPVEITVYE-DRSF 69
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP ++LI K G+EKGSGEP V N+T +QV +IA +K + A L AA K
Sbjct: 70 TFVTKTPPAARLILKHAGIEKGSGEPHKTKVANVTRDQVREIATIKMPDLNANDLDAAEK 129
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMGVTVEG
Sbjct: 130 IIAGTARSMGVTVEG 144
>gb|AAF36507.1|AF130462_4 (AF130462) 50S ribosomal protein L11 [Corynebacterium glutamicum]
Length = 145
Score = 107 bits (265), Expect = 6e-23
Identities = 55/135 (40%), Positives = 86/135 (62%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ ++ G+A P PP+GPA+G G+N+ + N AT+ G VPV+I V + F
Sbjct: 12 LIKLQIQAGQANPAPPVGPALGAHGVNIMEFCKAYNAATENQRGNVVPVEITVYE-DRSF 70
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ ++ PP ++L+ K GL+KGSG P VG ++M QV +IA+ K+ + A + AAAK
Sbjct: 71 DFKLKTPPAAKLLLKAAGLQKGSGVPHTQKVGKVSMAQVREIAETKKEDLNARDIDAAAK 130
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMG+TVEG
Sbjct: 131 IIAGTARSMGITVEG 145
>sp|O67758|RL11_AQUAE 50S RIBOSOMAL PROTEIN L11 >gi|7440797|pir||B70466 ribosomal protein
L11 - Aquifex aeolicus >gi|2984196|gb|AAC07727.1|
(AE000764) ribosomal protein L11 [Aquifex aeolicus]
Length = 145
Score = 106 bits (262), Expect = 1e-22
Identities = 60/143 (41%), Positives = 90/143 (61%), Gaps = 5/143 (3%)
Query: 1 MKKQVV---EVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVPVKII 56
M K+VV E+++ +A+P PP+GPA+G G+N+ + V + N A++++ G +PV I
Sbjct: 1 MAKKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVIT 60
Query: 57 VDPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLA 116
V + F + PP S L+KK G+EKGS +PK VG +T++Q+ +IAKMK M
Sbjct: 61 VYQ-DRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKDMNT 119
Query: 117 LTLKAAAKEVIGTALSMGVTVEG 139
LKAA + V GTA SMG+ +EG
Sbjct: 120 RDLKAAMRTVAGTAKSMGIEIEG 142
>sp|P36238|RL11_THETH 50S RIBOSOMAL PROTEIN L11 >gi|2120599|pir||S66576 ribosomal protein
L11 - Thermus aquaticus >gi|587583|emb|CAA57138.1|
(X81375) ribosomal protein L11 [Thermus thermophilus]
Length = 147
Score = 106 bits (262), Expect = 1e-22
Identities = 61/141 (43%), Positives = 82/141 (57%), Gaps = 3/141 (2%)
Query: 1 MKK--QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVD 58
MKK VV++ + GKATP PP+GPA+G G N+ + V N AT VPV+I +
Sbjct: 1 MKKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIY 60
Query: 59 PVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALT 118
+ F PP S LI+K GLEKG+ +P VG +T EQV++IAK K +
Sbjct: 61 -ADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTD 119
Query: 119 LKAAAKEVIGTALSMGVTVEG 139
L+AAA+ + G+A SMGV V G
Sbjct: 120 LEAAARMIAGSARSMGVEVVG 140
>sp|P27310|RL11_STRVG 50S RIBOSOMAL PROTEIN L11 >gi|285394|pir||B41773 ribosomal protein
L11 - Streptomyces virginiae >gi|217022|dbj|BAA01263.1|
(D10469) 50S ribosomal protein L11 [Streptomyces
virginiae] >gi|217031|dbj|BAA01262.1| (D10468) 50S
ribosomal protein L11 [Streptomyces virginiae]
>gi|1217912|dbj|BAA09302.1| (D50624) ribosomal protein
L11 [Streptomyces virginiae]
Length = 144
Score = 106 bits (262), Expect = 1e-22
Identities = 58/135 (42%), Positives = 81/135 (59%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ ++ G A P PP+GPA+G G+N+ + N AT+ GM VPV+I V + F
Sbjct: 11 LIKLQIKAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGMVVPVEITVYD-DRSF 69
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP ++LI K G+EKGSGEP V LT QV +IA++K + A + AA K
Sbjct: 70 TFITKTPPAARLILKHAGIEKGSGEPHKTKVAKLTAAQVKEIAELKMPDLNANDIDAAVK 129
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMGVTVEG
Sbjct: 130 IIAGTARSMGVTVEG 144
>sp|P36254|RL11_STACA 50S RIBOSOMAL PROTEIN L11 >gi|487096|pir||S38871 ribosomal protein
L11 - Staphylococcus carnosus >gi|581638|emb|CAA53739.1|
(X76134) L11 protein [Staphylococcus carnosus]
Length = 140
Score = 105 bits (260), Expect = 2e-22
Identities = 57/136 (41%), Positives = 83/136 (60%), Gaps = 1/136 (0%)
Query: 3 KQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTK 62
++VV++ + GKA P PP+GPA+G G+N+ + N T+E AG+ +PV+I V +
Sbjct: 6 EKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQEQAGLIIPVEISVYE-DR 64
Query: 63 QFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAA 122
F PP L+KK G+EKGSGEP N V +T +QV +IA+ K + A +AA
Sbjct: 65 SFTFITKTPPAPVLLKKAAGVEKGSGEPNKNKVATVTKDQVREIAQTKMPDLNAADEEAA 124
Query: 123 AKEVIGTALSMGVTVE 138
+ + GTA SMG+TVE
Sbjct: 125 MRIIEGTARSMGITVE 140
>prf||2004301A ribosomal protein L11 [Thermus aquaticus thermophilus]
Length = 147
Score = 104 bits (257), Expect = 6e-22
Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 1 MKK--QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVD 58
MKK VV++ + GKATPGPP+GPA+G G N+ + V N AT VPV+I +
Sbjct: 1 MKKVVAVVKLQLPAGKATPGPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIY 60
Query: 59 PVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALT 118
+ F PP S LI+K GLEKG+ +P VG +T EQV++IAK K +
Sbjct: 61 -ADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTD 119
Query: 119 LKAAAKEVIGTALSMGVTVEG 139
L+AAA+ + A SMGV V G
Sbjct: 120 LEAAARMIGARARSMGVEVVG 140
>pir||C81685 ribosomal protein L11 TC0593 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190631|gb|AAF39425.1| (AE002328)
ribosomal protein L11 [Chlamydia muridarum]
Length = 141
Score = 104 bits (257), Expect = 6e-22
Identities = 58/135 (42%), Positives = 79/135 (57%), Gaps = 1/135 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+++++ + GGKA P PP+GPA+G G+N+ + N AT++ G +PV I V K
Sbjct: 8 KIIKLQIPGGKANPAPPIGPALGAAGVNIMGFCKEFNAATQDRPGDLLPVVITVYS-DKT 66
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F + PP S LIKK LGLE GS P N VG L Q+ IA+ K M + L++A
Sbjct: 67 FSFVMKQPPVSSLIKKALGLESGSKIPNRNKVGKLARAQITAIAEQKMKDMDVVLLESAE 126
Query: 124 KEVIGTALSMGVTVE 138
+ V GTA SMGV VE
Sbjct: 127 RMVEGTARSMGVDVE 141
>sp|O87733|RL11_STRLA 50S RIBOSOMAL PROTEIN L11 >gi|3355885|dbj|BAA31976.1| (D87847)
ribosomal protein L11 [Streptomyces lavendulae]
Length = 144
Score = 104 bits (256), Expect = 7e-22
Identities = 58/135 (42%), Positives = 81/135 (59%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ ++ G A P PP+GPA+G G+N+ + N AT+ GM VPV+I V + F
Sbjct: 11 LIKLQIKAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGMVVPVEITVYE-DRTF 69
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP ++LI K G+EKGSGEP V LT QV +IA++K + A + AA K
Sbjct: 70 TFITKTPPAARLILKAAGIEKGSGEPHKTKVAKLTGAQVREIAELKMPDLNANDVDAAMK 129
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMGVTVEG
Sbjct: 130 IIAGTARSMGVTVEG 144
>sp|P36258|RL11_STRGR 50S RIBOSOMAL PROTEIN L11 >gi|322285|pir||S32235 ribosomal protein
L11 - Streptomyces griseus >gi|288461|emb|CAA51297.1|
(X72787) ribosomal protein L11 [Streptomyces griseus]
>gi|2447003|dbj|BAA22444.1| (D87846) ribosomal protein
L11 [Streptomyces griseus]
Length = 144
Score = 102 bits (253), Expect = 2e-21
Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ + G A P PP+GPA+G G+N+ + N AT+ GM VPV+I V + F
Sbjct: 11 LIKLQINAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGMVVPVEITVYE-DRSF 69
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP ++LI K G++KGSGEP V LT QV +IA K + A L AA+K
Sbjct: 70 TFVTKTPPAAKLILKAAGVDKGSGEPHKTKVAKLTAAQVREIATTKLPDLNANDLDAASK 129
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMG+TVEG
Sbjct: 130 IIAGTARSMGITVEG 144
>sp|O84321|RL11_CHLTR 50S RIBOSOMAL PROTEIN L11 >gi|7440798|pir||D71530 probable L11
ribosomal protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328736|gb|AAC67912.1| (AE001304) L11
Ribosomal Protein [Chlamydia trachomatis]
Length = 141
Score = 102 bits (253), Expect = 2e-21
Identities = 58/135 (42%), Positives = 79/135 (57%), Gaps = 1/135 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+++++ + GGKA P PP+GPA+G G+N+ + N AT++ G +PV I V K
Sbjct: 8 KIIKLQIPGGKANPAPPIGPALGAAGVNIMGFCKEFNAATQDRPGDLLPVVITVYS-DKT 66
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F + P S LIKK LGLE GS P N VG LT Q+ IA+ K M + L++A
Sbjct: 67 FSFVMKQSPVSSLIKKALGLESGSKIPNRNKVGKLTRAQITVIAEQKMKDMDVVLLESAE 126
Query: 124 KEVIGTALSMGVTVE 138
+ V GTA SMGV VE
Sbjct: 127 RMVEGTARSMGVDVE 141
>sp|Q9Z9A4|RL11_CHLPN 50S RIBOSOMAL PROTEIN L11 >gi|7440801|pir||H72121 ribosomal protein
L11 CP0698 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376335|gb|AAD18230.1|
(AE001593) L11 Ribosomal Protein [Chlamydophila
pneumoniae CWL029] >gi|7189612|gb|AAF38506.1| (AE002228)
ribosomal protein L11 [Chlamydophila pneumoniae AR39]
>gi|8978450|dbj|BAA98287.1| (AP002545) L11 ribosomal
protein [Chlamydophila pneumoniae J138]
Length = 141
Score = 102 bits (252), Expect = 2e-21
Identities = 58/135 (42%), Positives = 78/135 (56%), Gaps = 1/135 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+++++ + GGKA P PP+GPA+G G+N+ + N AT++ G +PV I V K
Sbjct: 8 KIIKLQIPGGKANPAPPIGPALGAAGVNIMGFCKEFNAATQDKPGDLLPVVITVY-ADKT 66
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F PP S LIKK L LE GS P N VG LT QV IA+ K M + L++A
Sbjct: 67 FTFITKQPPVSSLIKKTLNLESGSKIPNRNKVGKLTQAQVEAIAEQKMKDMDIVLLESAK 126
Query: 124 KEVIGTALSMGVTVE 138
+ V GTA SMG+ VE
Sbjct: 127 RMVEGTARSMGIDVE 141
>pir||G75323 ribosomal protein L11 - Deinococcus radiodurans (strain R1)
>gi|6459834|gb|AAF11593.1|AE002040_10 (AE002040)
ribosomal protein L11 [Deinococcus radiodurans]
Length = 144
Score = 102 bits (252), Expect = 2e-21
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
+V++ + GKATP PP+GPA+G G N+ + N T + +PV+I + + F
Sbjct: 7 IVKLQLPAGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAIIPVEITIY-ADRSF 65
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP S LI+K G+ KGS P VG L +QV++IAK K + A +++AAA
Sbjct: 66 TFITKTPPMSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAAN 125
Query: 125 EVIGTALSMGVTVEG 139
V GTA SMGVTVEG
Sbjct: 126 TVAGTARSMGVTVEG 140
>sp|O75000|RL12_SCHPO 60S RIBOSOMAL PROTEIN L12 >gi|7490011|pir||T41292 60s ribosomal
protein l12 - fission yeast (Schizosaccharomyces pombe)
>gi|7493305|pir||T41103 60s ribosomal protein l12 -
fission yeast (Schizosaccharomyces pombe)
>gi|3560267|emb|CAA20752.1| (AL031535) 60s ribosomal
protein L12.1/L12A [Schizosaccharomyces pombe]
>gi|3702628|emb|CAA21221.1| (AL031824) 60s ribosomal
protein l12 [Schizosaccharomyces pombe]
Length = 165
Score = 102 bits (251), Expect = 3e-21
Identities = 56/143 (39%), Positives = 89/143 (62%), Gaps = 5/143 (3%)
Query: 12 GGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFEIEVGVP 71
GG+ G L P IGPLGL+ K+V + I +ATK++ G++V VK+ + +Q + V VP
Sbjct: 19 GGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTIQ--NRQAAVSV-VP 75
Query: 72 PTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGT 129
S L+ K L + N+ GN++++++I++A+ R + LA L KE++GT
Sbjct: 76 SASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGT 135
Query: 130 ALSMGVTVEGKDPREVQREIDEG 152
A S+G TV+GK+P +VQ+EID G
Sbjct: 136 AFSVGCTVDGKNPHDVQKEIDNG 158
>sp|O83265|RL11_TREPA 50S RIBOSOMAL PROTEIN L11 >gi|7440793|pir||G71349 probable
ribosomal protein L11 (rplK) - syphilis spirochete
>gi|3322507|gb|AAC65225.1| (AE001205) ribosomal protein
L11 (rplK) [Treponema pallidum]
Length = 146
Score = 102 bits (251), Expect = 3e-21
Identities = 60/140 (42%), Positives = 84/140 (59%), Gaps = 4/140 (2%)
Query: 2 KKQVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVPVKIIVD 58
KK V ++ ++ GKATP PP+GPA+GP G++ Q V + N+ TK G+ VPV + V
Sbjct: 5 KKVVTQIKLQCPAGKATPAPPVGPALGPHGVSAPQFVQQFNDRTKSMEPGLVVPVVVTVY 64
Query: 59 PVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALT 118
K F + PP + LI+K G+EKGS V L++ Q+ +IA++K M ALT
Sbjct: 65 S-DKSFSFVLKTPPAAVLIRKACGIEKGSTNSVKQKVARLSLAQLTEIAQVKLPDMSALT 123
Query: 119 LKAAAKEVIGTALSMGVTVE 138
L AA + + GTA SMGV VE
Sbjct: 124 LDAAKRIIAGTARSMGVEVE 143
>sp|P56037|RL11_HELPY 50S RIBOSOMAL PROTEIN L11 >gi|7440794|pir||B64670 ribosomal protein
L11 - Helicobacter pylori >gi|2314364|gb|AAD08248.1|
(AE000626) ribosomal protein L11 (rpl11) [Helicobacter
pylori 26695] >gi|4155722|gb|AAD06703.1| (AE001540) 50S
RIBOSOMAL PROTEIN L11 [Helicobacter pylori J99]
Length = 141
Score = 101 bits (250), Expect = 4e-21
Identities = 58/140 (41%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 1 MKKQVV---EVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIV 57
M K+VV ++ + GKA P PP+GPA+G G+N+ + NE TK+ +PV I V
Sbjct: 1 MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITV 60
Query: 58 DPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLAL 117
K F PP + LIKK G+EKGS P N + LT +QV +IA++K +
Sbjct: 61 YQ-DKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTS 119
Query: 118 TLKAAAKEVIGTALSMGVTV 137
T++AA K V+G+A SMGV V
Sbjct: 120 TMEAAKKIVMGSARSMGVEV 139
>pir||H82007 50S ribosomal protein L11 NMA0146 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7378918|emb|CAB83461.1| (AL162752) 50S ribosomal
protein L11 [Neisseria meningitidis Z2491]
Length = 144
Score = 101 bits (250), Expect = 4e-21
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
+++ + GKA P PP+GPA+G GLN+ + N AT+ G+ +PV +I K F
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAATQGMEPGLPIPV-VITAFADKSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S L+KK GL+KGS P N VG LT Q+ +IAK K + A L AA +
Sbjct: 68 TFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLTRAQLEEIAKTKEPDLTAADLDAAVR 127
Query: 125 EVIGTALSMGVTVEG 139
+ G+A SMG+ VEG
Sbjct: 128 TIAGSARSMGLDVEG 142
>sp|O87085|RL11_STRAT 50S RIBOSOMAL PROTEIN L11 >gi|3355894|dbj|BAA31981.1| (AB005914)
ribosomal protein L11 [Streptomyces antibioticus]
Length = 144
Score = 101 bits (249), Expect = 5e-21
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ ++ G A P PP+GPA+G G+N+ + N AT+ G +PV+I V + F
Sbjct: 11 LIKLQIQAGAANPAPPVGPALGQHGVNIMEFCRAYNAATESQRGWVIPVEITVYE-DRSF 69
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP +++I K G+EKGSGEP V +T QV +IA K + A L AAAK
Sbjct: 70 TFITKTPPAAKMILKAAGIEKGSGEPHKTKVAKITEAQVREIATTKLPDLNANDLDAAAK 129
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMGVTVEG
Sbjct: 130 IIAGTARSMGVTVEG 144
>pir||D81235 50S ribosomal protein L11 NMB0127 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225344|gb|AAF40586.1| (AE002371) 50S ribosomal
protein L11 [Neisseria meningitidis MC58]
Length = 144
Score = 101 bits (248), Expect = 6e-21
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
+++ + GKA P PP+GPA+G GLN+ + N AT+ G+ +PV +I K F
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAATQGMEPGLPIPV-VITAFADKSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S L+KK GL+KGS P N VG LT Q+ +IAK K + A L AA +
Sbjct: 68 TFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLTRAQLEEIAKTKDPDLTAADLDAAVR 127
Query: 125 EVIGTALSMGVTVEG 139
+ G+A SMG+ VEG
Sbjct: 128 TIAGSARSMGLDVEG 142
>sp|O06443|RL11_STAAU 50S RIBOSOMAL PROTEIN L11 >gi|2078378|gb|AAB54019.1| (U96619) RplK;
ribosomal protein L11 [Staphylococcus aureus]
Length = 140
Score = 100 bits (247), Expect = 8e-21
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV++ + GKA P PP+GPA+G G+N+ + N T++ AG+ +PV+I V +
Sbjct: 7 KVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYE-DRS 65
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F PP L+KK G+EKGSGEP V +T +QV +IA K + A +AA
Sbjct: 66 FTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAM 125
Query: 124 KEVIGTALSMGVTVE 138
+ + GTA SMG+ VE
Sbjct: 126 RIIEGTARSMGIVVE 140
>sp|Q06796|RL11_BACSU 50S RIBOSOMAL PROTEIN L11 (BL11) >gi|481872|pir||S39860 ribosomal
protein L11 (BL11) rplK - Bacillus subtilis
>gi|285629|dbj|BAA02561.1| (D13303) ribosomal protein
L11 [Bacillus subtilis] >gi|2632369|emb|CAB11878.1|
(Z99104) ribosomal protein L11 (BL11) [Bacillus
subtilis]
Length = 141
Score = 99.8 bits (245), Expect = 1e-20
Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 1 MKKQVVEVL---VEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIV 57
M K+VV+V+ + GKA P PP+GPA+G G+NV + N T + AG+ +PV+I V
Sbjct: 1 MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNVMGFCKEFNARTADQAGLIIPVEISV 60
Query: 58 DPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLAL 117
+ F PP + L+KK G+E GSGEP N V + ++V +IA+ K + A
Sbjct: 61 YE-DRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAA 119
Query: 118 TLKAAAKEVIGTALSMGVTVE 138
++AA + V GTA SMG+ +E
Sbjct: 120 DVEAAMRMVEGTARSMGIVIE 140
>sp|P48954|RL11_STRCO 50S RIBOSOMAL PROTEIN L11 >gi|1084256|pir||S54718 ribosomal protein
L11 - Streptomyces coelicolor >gi|971289|dbj|BAA06986.1|
(D32254) ribosomal protein [Streptomyces coelicolor
A3(2)] >gi|3355896|dbj|BAA31982.1| (AB005915) ribosomal
protein L11 [Streptomyces coelicolor A3(2)]
>gi|3355898|dbj|BAA31983.1| (AB005916) ribosomal protein
L11 [Streptomyces lividans] >gi|3355902|dbj|BAA31985.1|
(AB006962) ribosomal protein L11 [Streptomyces
violaceoruber] >gi|7248342|emb|CAB77422.1| (AL160431)
50S ribosomal protein L11 [Streptomyces coelicolor
A3(2)]
Length = 144
Score = 99.5 bits (244), Expect = 2e-20
Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ ++ G A P PP+GPA+G G+N+ + N AT+ G +PV+I V + F
Sbjct: 11 LIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYE-DRSF 69
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP +++I K G+EKGSGEP V +T +QV +IA K + A L A K
Sbjct: 70 TFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEK 129
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMGVTVEG
Sbjct: 130 IIAGTARSMGVTVEG 144
>sp|P56210|RL11_BACST 50S RIBOSOMAL PROTEIN L11 >gi|1361387|pir||S55555 ribosomal protein
L11 - Bacillus stearothermophilus
>gi|1008575|gb|AAB34618.1| L11hs=heat-stable ribosomal
protein [Bacillus stearothermophilus, Peptide, 133 aa]
Length = 133
Score = 99.5 bits (244), Expect = 2e-20
Identities = 50/133 (37%), Positives = 80/133 (59%), Gaps = 1/133 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
+++ + GKA P PP+GPA+G G+N+ + N T + AG+ +PV+I V + F
Sbjct: 1 MKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITVFE-DRSFT 59
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
PP + L+KK G+E GSGEP N V + ++V +IA++K + A +++AA +
Sbjct: 60 FITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRM 119
Query: 126 VIGTALSMGVTVE 138
+ GTA SMG+ VE
Sbjct: 120 IEGTARSMGIVVE 132
>gi|11467314 ribosomal protein L11 [Cyanophora paradoxa]
>gi|1350604|sp|P48126|RK11_CYAPA CYANELLE 50S RIBOSOMAL
PROTEIN L11 >gi|7440800|pir||T06859 ribosomal protein
L11 - Cyanophora paradoxa cyanelle
>gi|1016115|gb|AAA81202.1| (U30821) ribosomal protein
L11 [Cyanophora paradoxa]
Length = 141
Score = 99.5 bits (244), Expect = 2e-20
Identities = 50/133 (37%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++++ GKATP PP+GPA+GP G++ + N T + G+ +P +I V + +
Sbjct: 8 IIKIVLPAGKATPAPPVGPALGPYGVSSVNFCKEYNAKTADKGGLVIPAEITVYD-DRSY 66
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S LI K +EKGSGEP VG++T Q+ +IAK+K + L+AA++
Sbjct: 67 SFVLKTPPASVLIAKAASVEKGSGEPNRKKVGSITKAQLEQIAKVKFPDLNTQNLEAASR 126
Query: 125 EVIGTALSMGVTV 137
V GTA +MG+T+
Sbjct: 127 IVEGTARNMGITI 139
>dbj|BAB03838.1| (AP001507) ribosomal protein L11 (BL11) [Bacillus halodurans]
Length = 141
Score = 99.1 bits (243), Expect = 2e-20
Identities = 51/135 (37%), Positives = 80/135 (58%), Gaps = 1/135 (0%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
++V++ + GKA P PP+GPA+G G+N+ + N T + AG+ +PV+I V +
Sbjct: 7 KMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTSDQAGLIIPVEITVFE-DRS 65
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F PP + L+KK G+E GSGEP N V + ++V +IA+ K + A ++AA
Sbjct: 66 FTFVTKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAADVEAAM 125
Query: 124 KEVIGTALSMGVTVE 138
+ V GTA SMG+ +E
Sbjct: 126 RMVEGTARSMGIVIE 140
>pir||T50076 probable 50S ribosomal protein L11 [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|6523777|emb|CAB62417.1|
(AL133357) probable 50S ribosomal protein L11
[Schizosaccharomyces pombe]
Length = 144
Score = 98.7 bits (242), Expect = 3e-20
Identities = 57/136 (41%), Positives = 78/136 (56%), Gaps = 4/136 (2%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQ 63
+++++V GKATP PP+GPA+G GL + N T + VP KI V P +
Sbjct: 8 IIKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTP-QRT 66
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRN--QMLALTLKA 121
F + PPTS LI K L LEKGS P H+I G L+++ + +IAK+K + + L +
Sbjct: 67 FTFTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLS 126
Query: 122 AAKEVIGTALSMGVTV 137
K VIGTA SMGV V
Sbjct: 127 LCKSVIGTAKSMGVKV 142
>gi|11467611 ribosomal protein L11 [Guillardia theta]
>gi|6093977|sp|O78412|RK11_GUITH CHLOROPLAST 50S
RIBOSOMAL PROTEIN L11 >gi|3602936|gb|AAC35597.1|
(AF041468) ribosomal protein L11 [Guillardia theta]
Length = 141
Score = 98.3 bits (241), Expect = 4e-20
Identities = 55/140 (39%), Positives = 84/140 (59%), Gaps = 4/140 (2%)
Query: 1 MKKQVVEVL---VEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIV 57
M K+VV ++ +E GKATP PP+GPA+G G+N+ N T + AG+ +PV+I V
Sbjct: 1 MAKKVVAIIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITV 60
Query: 58 DPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLAL 117
K + + PP S L+ K G++KGSG PK VG++T +QV +IA+ K +
Sbjct: 61 YE-DKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTR 119
Query: 118 TLKAAAKEVIGTALSMGVTV 137
L++A + + GTA +MG+ V
Sbjct: 120 RLESAIRIIEGTAKNMGIGV 139
>sp|P96931|RL11_MYCTU 50S RIBOSOMAL PROTEIN L11 >gi|7440799|pir||E70613 probable
ribosomal protein L11 rplK - Mycobacterium tuberculosis
(strain H37RV) >gi|1877378|emb|CAB07099.1| (Z92772) rplK
[Mycobacterium tuberculosis]
Length = 142
Score = 97.1 bits (238), Expect = 9e-20
Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ + G+A P PP+GPA+G G+N+ + N AT+ G +PV+I V + F
Sbjct: 10 LIKLQIVAGQANPAPPVGPALGQHGVNIMEFCKAYNAATENQRGNVIPVEITVYE-DRSF 68
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP ++L+ K G+ KGS EP V +T +QV +IA+ K+ + A + AAAK
Sbjct: 69 TFTLKTPPAAKLLLKAAGVAKGSAEPHKTKVAKVTWDQVREIAETKKTDLNANDVDAAAK 128
Query: 125 EVIGTALSMGVTVE 138
+ GTA SMG+TVE
Sbjct: 129 IIAGTARSMGITVE 142
>sp|P36237|RL11_SYNY3 50S RIBOSOMAL PROTEIN L11 >gi|1075628|pir||C49316 ribosomal protein
L11 - Synechocystis sp >gi|452792|emb|CAA51491.1|
(X73005) ribosomal protein L11 [Synechocystis PCC6803]
>gi|1652498|dbj|BAA17419.1| (D90906) 50S ribosomal
protein L11 [Synechocystis sp.]
Length = 141
Score = 96.3 bits (236), Expect = 2e-19
Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 1 MKKQVVEVL---VEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIV 57
M K+VV ++ + GKA P PP+GPA+G G+N+ + N T + GM +PV+I V
Sbjct: 1 MAKKVVALIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADKPGMIIPVEISV 60
Query: 58 DPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLAL 117
+ F + PP S LI+K G+EKGS EP N V ++T EQ+ +IA+ K + A
Sbjct: 61 FE-DRSFTFILKTPPASVLIRKAAGVEKGSSEPNKNKVASITREQLREIAQTKLPDLNAN 119
Query: 118 TLKAAAKEVIGTALSMGVTV 137
+ AA + GTA +MG+TV
Sbjct: 120 DIDAAMNIIEGTARNMGITV 139
>sp|Q9Y9W5|RL11_AERPE 50S RIBOSOMAL PROTEIN L11P >gi|7521360|pir||A72525 probable
ribosomal protein L11 APE2174 - Aeropyrum pernix
(strain K1) >gi|5105873|dbj|BAA81185.1| (AP000063) 108aa
long hypothetical 50S ribosomal protein L11 [Aeropyrum
pernix]
Length = 108
Score = 96.3 bits (236), Expect = 2e-19
Identities = 44/94 (46%), Positives = 69/94 (72%)
Query: 71 PPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGTA 130
P T++L+ K + + SG+P H +G+L E++++IA K+ +LA TLKAA K ++G+A
Sbjct: 9 PSTTELLLKAVSAKAPSGDPIHQKIGDLPFEKIVEIAIEKKPDLLAKTLKAAVKTILGSA 68
Query: 131 LSMGVTVEGKDPREVQREIDEGVYDELFEKAEKE 164
S+GVTV+GKDP+EV R++DEGVYD + K E++
Sbjct: 69 RSIGVTVDGKDPKEVTRQVDEGVYDAVLAKYEEK 102
>gb|AAF31280.1|AC006424_9 (AC006424) Very similar to Spinacia oleracea 50S ribosomal p>
[Arabidopsis thaliana]
Length = 222
Score = 96.3 bits (236), Expect = 2e-19
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
V+++ +E GKATP PP+GPA+G G+N+ N T + AG +PV+I V K F
Sbjct: 77 VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVFD-DKSF 135
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S L+ K G+EKGS +P+ + VG +T++Q+ IA K + T+++A +
Sbjct: 136 TFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIESAMR 195
Query: 125 EVIGTALSMGVTVE 138
+ GTA +MG+ ++
Sbjct: 196 IIAGTAANMGIDID 209
>gi|11465803 50S ribosomal protein L11 [Porphyra purpurea]
>gi|1710408|sp|P51337|RK11_PORPU CHLOROPLAST 50S
RIBOSOMAL PROTEIN L11 >gi|2147042|pir||S73258 ribosomal
protein L11, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276803|gb|AAC08223.1| (U38804) 50S
ribosomal protein L11 [Porphyra purpurea]
Length = 141
Score = 95.6 bits (234), Expect = 3e-19
Identities = 52/134 (38%), Positives = 77/134 (56%), Gaps = 1/134 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
+V++ + GKATP PP+GPA+G G+N+ + N T + G+ +PV+I V + F
Sbjct: 8 IVKLALNAGKATPAPPVGPALGQHGVNIVMFCKEYNARTADKTGLVIPVEISVYE-DRSF 66
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S LI K GL KGSGEP +G++T +Q+ IA+ K + L A K
Sbjct: 67 SFILKTPPASVLIVKAAGLNKGSGEPNIKKIGSITTKQLESIAETKLPDLNTNNLSQAMK 126
Query: 125 EVIGTALSMGVTVE 138
V GTA +MG+ +E
Sbjct: 127 IVGGTAKNMGILIE 140
>dbj|BAB09840.1| (AB005246) 60S ribosomal protein L12 [Arabidopsis thaliana]
Length = 166
Score = 95.6 bits (234), Expect = 3e-19
Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 8/157 (5%)
Query: 4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPV 60
Q+V+V V GG+ L P IGPLGL K++ + I E KE+ G++V VK+ V
Sbjct: 9 QIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQ-- 66
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALT 118
+Q ++ V VP + L+ K L + + NI GN++ + VI+IAK+ R + +A
Sbjct: 67 NRQAKVTV-VPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKE 125
Query: 119 LKAAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
L KE++GT +S+G TV+GKDP+++Q EI+ G D
Sbjct: 126 LSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDID 162
>gi|7705618 CGI-113 protein [Homo sapiens] >gi|4929695|gb|AAD34108.1|AF151871_1
(AF151871) CGI-113 protein [Homo sapiens]
Length = 192
Score = 94.8 bits (232), Expect = 5e-19
Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVPVKIIVDPVTKQ 63
V+ +V G A PGPPLGP +G G+++ Q + NE TK+ G+ +P KI+V P +
Sbjct: 19 VIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKP-DRT 77
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMK-RNQMLAL---TL 119
FEI++G P S +K G+EKG+ + + G +T++ V +IA++K +++ AL L
Sbjct: 78 FEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPL 137
Query: 120 KAAAKEVIGTALSMGVTV 137
+ + +IG+A S+G+ V
Sbjct: 138 SSVVRSIIGSARSLGIRV 155
>sp|P44351|RL11_HAEIN 50S RIBOSOMAL PROTEIN L11 >gi|1075230|pir||A64074 ribosomal protein
L11 - Haemophilus influenzae (strain Rd KW20)
>gi|1573500|gb|AAC22175.1| (U32734) ribosomal protein
L11 (rpL11) [Haemophilus influenzae Rd]
Length = 142
Score = 94.4 bits (231), Expect = 6e-19
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
V++ V G A P PP+GPA+G G+N+ + N T+ G+ +PV I V + F
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNARTESLEKGLPIPVVITVY-ADRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP + L+KK G++ GSG+P + VG +T++QV +IA+ K M T++ K
Sbjct: 68 TFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTLDQVRQIAETKAADMTGATIETKMK 127
Query: 125 EVIGTALSMGVTVE 138
+ GTA SMG+ VE
Sbjct: 128 SIAGTARSMGLVVE 141
>gi|11465493 unknown; 50S ribosomal protein L11 [Cyanidium caldarium]
>gi|6466396|gb|AAF12978.1|AF022186_101 (AF022186)
unknown; 50S ribosomal protein L11 [Cyanidium caldarium]
Length = 141
Score = 94.4 bits (231), Expect = 6e-19
Identities = 49/133 (36%), Positives = 80/133 (59%), Gaps = 1/133 (0%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
V++ + GKATP PP+GPA+G G+N+ V + N T+E G +P +I + K F
Sbjct: 9 VKLALPAGKATPAPPVGPALGQHGVNIMMFVKEYNARTEEQKGSIIPAEIQIYE-DKSFT 67
Query: 66 IEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKE 125
+ PP S L+K+ G+EK + P+ VG+++ +++ IAK+K N++ L A K
Sbjct: 68 FILKTPPASILLKQATGIEKATKAPRREQVGSISYKEIQNIAKIKINELNTKDLSKAIKI 127
Query: 126 VIGTALSMGVTVE 138
+ GTA +MG++VE
Sbjct: 128 IEGTAKNMGISVE 140
>pir||E81392 50S ribosomal protein L11 Cj0474 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967945|emb|CAB75112.1|
(AL139075) 50S ribosomal protein L11 [Campylobacter
jejuni]
Length = 141
Score = 94.0 bits (230), Expect = 8e-19
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 1 MKKQVV---EVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIV 57
M K+VV ++ + KA P PP+GPA+G G+N+ + NE TK+ AG +PV I V
Sbjct: 1 MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNERTKDMAGFNIPVVITV 60
Query: 58 DPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLAL 117
K F PP + LIKK G+ KG+ P N VG LT QV++I K +
Sbjct: 61 Y-ADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTRAQVLEIVDKKIADLNTK 119
Query: 118 TLKAAAKEVIGTALSMGVTV 137
AAK + G+A SMGV +
Sbjct: 120 DRDQAAKIIAGSARSMGVEI 139
>pir||F82531 50S ribosomal protein L11 XF2637 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107868|gb|AAF85434.1|AE004071_2
(AE004071) 50S ribosomal protein L11 [Xylella
fastidiosa]
Length = 158
Score = 94.0 bits (230), Expect = 8e-19
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
+++ V+ G+A+P PP+GPA+G GLN+ N AT++ G+ +PV +I + F
Sbjct: 25 IKLQVKAGQASPSPPVGPALGQRGLNIMDFCKAFNAATQKVEQGLPIPV-VITAYSDRTF 83
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP S L+KK +G++ GS P VG +T +Q+ IAK K M A L AA +
Sbjct: 84 TFITKTPPASILLKKIVGIQSGSKRPNTEKVGKVTRKQLEDIAKTKELDMTAADLDAAVR 143
Query: 125 EVIGTALSMGVTVEG 139
+ G+A SMG+ VEG
Sbjct: 144 TIAGSARSMGLVVEG 158
>sp|P31164|RK11_SPIOL 50S RIBOSOMAL PROTEIN L11, CHLOROPLAST PRECURSOR (CL11)
>gi|279648|pir||R5SP11 ribosomal protein L11 precursor -
spinach >gi|21313|emb|CAA39950.1| (X56615) ribosomal
protein L11 [Spinacia oleracea]
Length = 224
Score = 93.6 bits (229), Expect = 1e-18
Identities = 49/134 (36%), Positives = 78/134 (57%), Gaps = 1/134 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
V+++ +E GKATP PP+GPA+G G+N+ N T + G +PV+I V K F
Sbjct: 79 VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFD-DKSF 137
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S L+ K G EKGS +P+ VG +T++Q+ IA K + T+++A +
Sbjct: 138 TFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMR 197
Query: 125 EVIGTALSMGVTVE 138
+ GTA +MG+ ++
Sbjct: 198 IIAGTAANMGIDID 211
>sp|P23358|RL12_RAT 60S RIBOSOMAL PROTEIN L12 >gi|71213|pir||R7RT12 ribosomal protein
L12, cytosolic [validated] - rat
>gi|57680|emb|CAA37581.1| (X53504) ribosomal protein L12
[Rattus rattus]
Length = 165
Score = 92.8 bits (227), Expect = 2e-18
Identities = 55/154 (35%), Positives = 90/154 (57%), Gaps = 5/154 (3%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV + GG+ L P IGPLGL+ K+V D I +AT ++ G+++ VK+ + +Q
Sbjct: 11 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ--NRQ 68
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKA 121
+IEV VP S LI K L + + NI GN+T ++++ IA+ R++ LA L
Sbjct: 69 AQIEV-VPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSG 127
Query: 122 AAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE++GTA S+G V+G+ P ++ +I+ G +
Sbjct: 128 TIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVE 161
>gi|4506597 ribosomal protein L12 [Homo sapiens]
>gi|266921|sp|P30050|RL12_HUMAN 60S RIBOSOMAL PROTEIN
L12 >gi|479851|pir||S35531 ribosomal protein L12,
cytosolic - human >gi|186800|gb|AAA36157.1| (L06505)
ribosomal protein L12 [Homo sapiens]
Length = 165
Score = 92.8 bits (227), Expect = 2e-18
Identities = 55/154 (35%), Positives = 90/154 (57%), Gaps = 5/154 (3%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV + GG+ L P IGPLGL+ K+V D I +AT ++ G+++ VK+ + +Q
Sbjct: 11 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ--NRQ 68
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKA 121
+IEV VP S LI K L + + NI GN+T ++++ IA+ R++ LA L
Sbjct: 69 AQIEV-VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSG 127
Query: 122 AAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE++GTA S+G V+G+ P ++ +I+ G +
Sbjct: 128 TIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVE 161
>gi|6677769 ribosomal protein L12 [Mus musculus]
>gi|548745|sp|P35979|RL12_MOUSE 60S RIBOSOMAL PROTEIN
L12 >gi|476463|pir||JN0778 ribosomal protein L12 - mouse
>gi|398048|gb|AAA40066.1| (L04280) ribosomal protein L12
[Mus musculus]
Length = 165
Score = 92.4 bits (226), Expect = 2e-18
Identities = 55/154 (35%), Positives = 90/154 (57%), Gaps = 5/154 (3%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV + GG+ L P IGPLGL+ K+V D I +AT ++ G+++ VK+ + +Q
Sbjct: 11 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ--NRQ 68
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKA 121
+IEV VP S LI K L + + NI GN+T ++++ IA+ R++ LA L
Sbjct: 69 AQIEV-VPSASGLIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSG 127
Query: 122 AAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE++GTA S+G V+G+ P ++ +I+ G +
Sbjct: 128 TIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVE 161
>pir||T45883 60S RIBOSOMAL PROTEIN L12-like - Arabidopsis thaliana
>gi|6729494|emb|CAB67650.1| (AL132966) 60S RIBOSOMAL
PROTEIN L12-like [Arabidopsis thaliana]
Length = 166
Score = 92.4 bits (226), Expect = 2e-18
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPV 60
Q+V+V V GG+ L P IGPLGL K++ + I E KE+ G++V VK+ V
Sbjct: 9 QIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQ-- 66
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALT 118
+Q ++ V VP + L+ K L + + NI GN++ + V +IA++ R + +A
Sbjct: 67 NRQAKVTV-VPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKE 125
Query: 119 LKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152
L +E++GT +S+G TV+GKDP+++Q+EI EG
Sbjct: 126 LSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEG 159
>gb|AAD18140.1| (AC006260) 60S ribosomal protein L12 [Arabidopsis thaliana]
Length = 166
Score = 92.1 bits (225), Expect = 3e-18
Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPV 60
Q+V+V V GG+ L P IGPLGL K++ + I E KE+ G++V VK+ V
Sbjct: 9 QIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQ-- 66
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALT 118
+Q ++ V VP + L+ K L + + NI GN++ + V +IA++ R + +A
Sbjct: 67 NRQAKVTV-VPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKE 125
Query: 119 LKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152
L +E++GT +S+G TV+GKDP+++Q+EI +G
Sbjct: 126 LSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDG 159
>emb|CAC01510.1| (AL132821) dJ999L4.1 (ribosomal protein L12) [Homo sapiens]
Length = 165
Score = 91.7 bits (224), Expect = 4e-18
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV + GG+ L P IGPLGL+ K+V D I +A ++ G+++ VK+ + +Q
Sbjct: 11 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAMGDWKGLRITVKLTIQ--NRQ 68
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKA 121
+IEV VP S +I K L + + NI GN+T ++++ IA+ R+Q LA L
Sbjct: 69 AQIEV-VPSASAMIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHQSLARELSG 127
Query: 122 AAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE++GTA S+G V+G+ P ++ +I+ G +
Sbjct: 128 TTKEILGTAQSVGCNVDGRHPHDIIDDINSGAVE 161
>gi|11429886 similar to ribosomal protein L12 (H. sapiens) [Homo sapiens]
Length = 187
Score = 91.3 bits (223), Expect = 5e-18
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV + GG+ L P IGPLGL+ K+V D I +AT ++ G+++ VK+ + +Q
Sbjct: 33 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ--NRQ 90
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKA 121
+IEV VP S LI K L + + NI GN+T ++++ I + R++ LA L
Sbjct: 91 AQIEV-VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIVRQMRHRSLARELSG 149
Query: 122 AAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE++GTA S+G V+G+ P ++ +I+ G +
Sbjct: 150 TIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVE 183
>sp|P50884|RL12_CHLRE 60S RIBOSOMAL PROTEIN L12 >gi|7440807|pir||T08157 ribosomal protein
L12 - Chlamydomonas reinhardtii (fragment)
>gi|1167828|emb|CAA64626.1| (X95314) 60S ribosomal
protein L12 [Chlamydomonas reinhardtii]
Length = 157
Score = 90.5 bits (221), Expect = 9e-18
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 5 VVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVT 61
VVEV V GG+ L P IGPLGL+ K++ + I E K++ G+++ VK+ V
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQ--N 58
Query: 62 KQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNI--VGNLTMEQVIKIAKMKRNQMLALTL 119
+Q +I V +P + L+ K L + + NI G++TM +I+IA++ R + A L
Sbjct: 59 RQAKISV-IPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDL 117
Query: 120 KAAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE++GTA+S+G V+GKDPR+V ID+G +
Sbjct: 118 ANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIE 153
>dbj|BAA22445.1| (D87846) ribosomal protein L11 [Streptomyces griseus]
Length = 140
Score = 90.5 bits (221), Expect = 9e-18
Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ + G A P PP +G G+N+ + N AT+ GM VPV+I V + F
Sbjct: 11 LIKLQINAGAANPAPP----VGQHGVNIMEFCKAYNAATESQRGMVVPVEITVYE-DRSF 65
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP ++LI K G++KGSGEP V LT QV +IA K + A L AA+K
Sbjct: 66 TFVTKTPPAAKLILKAAGVDKGSGEPHKTKVAKLTAAQVREIATTKLPDLNANDLDAASK 125
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMG+TVEG
Sbjct: 126 IIAGTARSMGITVEG 140
>pir||B82338 ribosomal protein L11 VC0324 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9654737|gb|AAF93497.1| (AE004120)
ribosomal protein L11 [Vibrio cholerae]
Length = 142
Score = 90.1 bits (220), Expect = 1e-17
Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
V++ V G A P PP+GPA+G G+N+ + N T+ G+ +PV I V + F
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQRGVNIMEFCKAFNARTESLEKGLPIPVVITVYS-DRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
E PP S L+KK G++ GS P VG +T Q+ +IA K M ++A +
Sbjct: 68 TFETKTPPASVLLKKAAGIKSGSARPNTAKVGTITDAQIQEIAATKAADMTGADIEAMKR 127
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMG+ VEG
Sbjct: 128 SIAGTARSMGLVVEG 142
>dbj|BAB04128.1| (AP001508) ribosomal protein L11 (BL11) [Bacillus halodurans]
Length = 141
Score = 90.1 bits (220), Expect = 1e-17
Identities = 47/136 (34%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 3 KQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTK 62
KQ+V + +E GKA P +G + P G+N+ ++ NE TK G+ VP KI + +
Sbjct: 6 KQIVTINLEAGKANPAK-VGKDLAPTGINLLGFCNQYNEMTKLQLGLVVPAKITIYE-DR 63
Query: 63 QFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAA 122
F +++ PP + L+KK G+EKG+ +P +VG++T +Q+ IA++K + ++ A
Sbjct: 64 SFNVKLKTPPAAFLLKKYAGVEKGAAQPGKEVVGSITTQQLRTIAEIKLPDLNTTSIDRA 123
Query: 123 AKEVIGTALSMGVTVE 138
K + GTA +MG+ +E
Sbjct: 124 MKIIAGTARNMGINIE 139
>sp|O50003|RL12_PRUAR 60S RIBOSOMAL PROTEIN L12 >gi|2677830|gb|AAB97143.1| (U93168)
ribosomal protein L12 [Prunus armeniaca]
Length = 166
Score = 89.3 bits (218), Expect = 2e-17
Identities = 55/154 (35%), Positives = 94/154 (60%), Gaps = 8/154 (5%)
Query: 4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPV 60
QVV+V V GG+ L P IGPLGL+ K++ + I E ++ G++V VK+ V
Sbjct: 9 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQ-- 66
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALT 118
+Q ++ V VP + L+ K L + + NI G+++++ VI+IAK+ +++ +A
Sbjct: 67 NRQAKVSV-VPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKE 125
Query: 119 LKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152
L KE++ T +S+G TV+GKDP+++Q+EI +G
Sbjct: 126 LAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADG 159
>gb|AAF47152.1| (AE003462) CG3195 gene product [Drosophila melanogaster]
Length = 165
Score = 88.2 bits (215), Expect = 5e-17
Identities = 54/143 (37%), Positives = 83/143 (57%), Gaps = 5/143 (3%)
Query: 12 GGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFEIEVGVP 71
GG+ L P IGPLGL+ K++ D I +AT ++ G+++ V + + +Q I V VP
Sbjct: 19 GGEVGATSSLAPKIGPLGLSPKKIGDDIAKATSDWKGLKITVCLTIQ--NRQAAISV-VP 75
Query: 72 PTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGT 129
+ LI K L + + NI GN+ E ++ IA++ R + +A LK KEV+GT
Sbjct: 76 SAASLIIKALKEPPRDRKKQKNIKHSGNIGFEDILAIARVMRPRSMARELKGTCKEVLGT 135
Query: 130 ALSMGVTVEGKDPREVQREIDEG 152
A S+G TV+GK P +V E++EG
Sbjct: 136 AQSVGCTVDGKHPHDVIDELNEG 158
>sp|P10055|RL11_PROVU 50S RIBOSOMAL PROTEIN L11 >gi|71209|pir||R5EB1P ribosomal protein
L11 - Proteus vulgaris >gi|45925|emb|CAA31097.1|
(X12585) L11 protein (AA 1-142) [Proteus vulgaris]
Length = 142
Score = 87.8 bits (214), Expect = 6e-17
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
+++ V G A P PP+GPA+G G+N+ + N T+ G+ +PV I V + F
Sbjct: 9 IKLQVSAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTESVEKGLPIPVVITVI-ADRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP + L+KK G++ GSG+P VG +T QV +IA+ K + ++A +
Sbjct: 68 TFVTKTPPAAVLLKKAAGVKSGSGKPNKEKVGKITSAQVREIAETKAADLTGADVEAMMR 127
Query: 125 EVIGTALSMGVTVE 138
+ GTA SMG+ VE
Sbjct: 128 SIAGTARSMGLVVE 141
>sp|P09763|RL11_SERMA 50S RIBOSOMAL PROTEIN L11 >gi|71208|pir||R5SE11 ribosomal protein
L11 - Serratia marcescens >gi|47256|emb|CAA31095.1|
(X12584) L11 protein (AA 1-142) [Serratia marcescens]
Length = 142
Score = 87.8 bits (214), Expect = 6e-17
Identities = 49/134 (36%), Positives = 73/134 (53%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
V++ V G A P PP+GPA+G G+N+ + N T G+ +PV I V + F
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYS-DRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP + L+KK G++ GSG+P + VG +T QV +IA+ K M ++A +
Sbjct: 68 TFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTRAQVREIAETKAADMTGSDVEAMTR 127
Query: 125 EVIGTALSMGVTVE 138
+ GTA SMG+ VE
Sbjct: 128 SIEGTARSMGLVVE 141
>sp|P36250|RL11_CGDAB 50S RIBOSOMAL PROTEIN L11 >gi|144456|gb|AAA23105.1| (M94319)
ribosomal protein L11 [Liberibacter asiaticus]
>gi|739023|prf||2002224B ribosomal protein L11 [Citrus
greening disease-associated bacterium]
Length = 142
Score = 87.8 bits (214), Expect = 6e-17
Identities = 47/135 (34%), Positives = 76/135 (55%), Gaps = 2/135 (1%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTK 62
++V++ +E G A P PP+GPAIG G+ + N AT+ G+ +P + K
Sbjct: 7 RIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYK-DK 65
Query: 63 QFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAA 122
F + PP S +KKE+G++ GS P G++T E + KIA++K M A+ ++ A
Sbjct: 66 SFTFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGA 125
Query: 123 AKEVIGTALSMGVTV 137
+ V G+A SMG++V
Sbjct: 126 MRMVEGSACSMGISV 140
>pir||C83111 50S ribosomal protein L11 PA4274 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950493|gb|AAG07662.1|AE004843_4 (AE004843) 50S
ribosomal protein L11 [Pseudomonas aeruginosa]
Length = 143
Score = 87.8 bits (214), Expect = 6e-17
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATK-EFAGMQVPVKIIVDPVTKQF 64
+++ V+ G+A P PP+GPA+G G+N+ + N T+ + G+ PV I V + F
Sbjct: 9 IKLQVKAGQANPSPPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYS-DRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
E P + L+KK G+ GS P VG +T Q+ +IAK K+ + A L AA +
Sbjct: 68 TFETKSTPAAVLLKKAAGITSGSARPNSQKVGTVTRAQLEEIAKTKQADLTAADLDAAVR 127
Query: 125 EVIGTALSMGVTVEG 139
+ G+A SMG+ VEG
Sbjct: 128 TIAGSARSMGLNVEG 142
>emb|CAA16156.1| (AL021366) cICK0721Q.2 (60S Ribosomal Protein L12 LIKE protein)
[Homo sapiens] >gi|6624590|emb|CAB63781.1| (AL050332)
dJ570F3.5 (ribosomal protein L12) [Homo sapiens]
Length = 165
Score = 87.4 bits (213), Expect = 8e-17
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 9/156 (5%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
+VV + G+ L P IGPLGL+ K+V D I +AT ++ G+++ VK+ ++ +Q
Sbjct: 11 KVVYLRCTRGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIE--NRQ 68
Query: 64 FEIEVGVP----PTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTL 119
+IEV VP P + +KK K KHN GN+T ++++ IA+ R++ LA L
Sbjct: 69 AQIEV-VPSASAPIIKALKKPPRDRKKQKNIKHN--GNITFDEIVNIARQMRHRSLAREL 125
Query: 120 KAAAKEVIGTALSMGVTVEGKDPREVQREIDEGVYD 155
KE+ GTA SMG V+G P ++ +I+ G +
Sbjct: 126 SGTIKEIPGTAQSMGCNVDGHHPHDIIDDINSGAVE 161
>emb|CAB88388.1| (AJ252184) L12 ribosomal protein [Hydra vulgaris]
Length = 165
Score = 87.0 bits (212), Expect = 1e-16
Identities = 53/152 (34%), Positives = 81/152 (52%), Gaps = 9/152 (5%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
+V + V GG+ L P IGPLGL+ K+V D I +AT E+ G++V VK+++
Sbjct: 12 IVYLRVIGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGEWKGLKVTVKLVIQNRNATI 71
Query: 65 EIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLK 120
+ VP + LI K L K KHN G++T++ + IA+ R + LA
Sbjct: 72 SV---VPSAASLIIKYLKEPPRDRKKVKHVKHN--GDITLDNIFDIARQMRERSLARKFS 126
Query: 121 AAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152
KE++GTA S+G T++GK P ++ I G
Sbjct: 127 GTVKEILGTAQSVGCTIDGKSPHDIIESIQSG 158
>sp|P02409|RL11_ECOLI 50S RIBOSOMAL PROTEIN L11 >gi|71207|pir||R5EC11 ribosomal protein
L11 [validated] - Escherichia coli
>gi|2367334|gb|AAC76957.1| (AE000472) 50S ribosomal
subunit protein L11 [Escherichia coli K12]
>gi|6960354|gb|AAF33514.1| (AF170176) 100% identity over
141 amino acids to E. coli 50S ribosomal subunit protein
L11 (RPLK or RELC) (SW:P02409; P76778) contains
similarity to Pfam domain PF00298 (Ribosomal_L11),
Score=295.5, E=6.4e-85, N=1 [Salmonella typhimurium LT2]
Length = 142
Score = 86.6 bits (211), Expect = 1e-16
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
V++ V G A P PP+GPA+G G+N+ + N T G+ +PV I V + F
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY-ADRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP + L+KK G++ GSG+P + VG ++ Q+ +IA+ K M ++A +
Sbjct: 68 TFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTR 127
Query: 125 EVIGTALSMGVTVE 138
+ GTA SMG+ VE
Sbjct: 128 SIEGTARSMGLVVE 141
>sp|O62290|RL12_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L12 >gi|7505022|pir||T23150
hypothetical protein JC8.3 - Caenorhabditis elegans
>gi|3924781|emb|CAB05226.1| (Z82274) predicted using
Genefinder~contains similarity to Pfam domain: PF00298
(Ribosomal protein L11), Score=176.7, E-value=1.2e-49,
N=1~cDNA EST EMBL:T00775 comes from this gene; cDNA EST
yk627a7.3 comes from this gene; cDNA EST yk627a7.5 comes
from> >gi|7637748|gb|AAF65224.1|AF246691_1 (AF246691)
ribosomal protein L12 [Caenorhabditis briggsae]
Length = 165
Score = 86.6 bits (211), Expect = 1e-16
Identities = 50/153 (32%), Positives = 88/153 (56%), Gaps = 9/153 (5%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
++V + GG+ L P +GPLGL+ K++ + I +AT+++ G++V K+ + +
Sbjct: 11 KIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCKLTIQNRVAK 70
Query: 64 FEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTL 119
++ VP + LI KEL K KHN G+LT++ +IKIA++ R + +A L
Sbjct: 71 IDV---VPSAASLIVKELKEPPRDRKKVKNVKHN--GDLTVDTIIKIARIMRPRSMAKKL 125
Query: 120 KAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152
+ KE++GTA S+G T++G+ P ++ I G
Sbjct: 126 EGTVKEILGTAQSVGCTIDGQHPHDIIESIANG 158
>sp|P57150|RL11_BUCAI 50S RIBOSOMAL PROTEIN L11 >gi|10038730|dbj|BAB12765.1| (AP001118)
50S ribosomal protein L11 [Buchnera sp. APS]
Length = 142
Score = 86.6 bits (211), Expect = 1e-16
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
+++ V G A P PP+GPA+G G+N+ + N+ T+ G+ +PV I V + F
Sbjct: 9 IKLQVSAGAANPSPPIGPALGQKGVNIMEFCKLFNKKTENIEKGLPIPVIITVYS-DRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP S L+KK G++KGS + K +G + Q+ +IA +K N M ++ +
Sbjct: 68 TFITKTPPASVLLKKLSGIKKGSSKNKSEKIGKINRSQIKEIAIIKNNDMTGSNIENMMR 127
Query: 125 EVIGTALSMGVTVEG 139
+ GTA SMG+ +EG
Sbjct: 128 SIEGTAKSMGLIIEG 142
>gi|11466627 ribosomal protein L11 [Malawimonas jakobiformis]
>gi|10178665|gb|AAG13677.1|AF295546_3 (AF295546)
ribosomal protein L11 [Malawimonas jakobiformis]
Length = 143
Score = 86.6 bits (211), Expect = 1e-16
Identities = 46/137 (33%), Positives = 77/137 (55%), Gaps = 3/137 (2%)
Query: 3 KQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAG-MQVPVKIIVDPVT 61
K+V +V + KA+P PP+GP G G+N+ + N TKEF M +PV+I ++
Sbjct: 6 KEVFKVTINANKASPTPPIGPMFGQRGINIMDFSKEFNNNTKEFKDEMPIPVEITLNK-N 64
Query: 62 KQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKM-KRNQMLALTLK 120
+ I + P TS +IKK + KGS + KH+I+ N+ ++ + +I KM +N + K
Sbjct: 65 RSILINIKKPKTSYIIKKLCNILKGSSQAKHSIISNIKIQHIYEIVKMLNKNNLTENEFK 124
Query: 121 AAAKEVIGTALSMGVTV 137
K ++ +A SMG+ +
Sbjct: 125 NECKVLMASAKSMGIEI 141
>sp|O51354|RL11_BORBU 50S RIBOSOMAL PROTEIN L11 >gi|7440795|pir||H70148 ribosomal protein
L11 (rplK) - Lyme disease spirochete
>gi|2688304|gb|AAC66772.1| (AE001145) ribosomal protein
L11 (rplK) [Borrelia burgdorferi]
Length = 143
Score = 85.8 bits (209), Expect = 2e-16
Identities = 52/134 (38%), Positives = 80/134 (58%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVPVKIIVDPVTKQF 64
+++ V +A PG +G A+GP G++ Q V + NE T + G+ VPV I V K F
Sbjct: 10 IKLQVPAAQAAPGAKIGQALGPHGVSGPQFVKEFNERTAKMDPGIVVPVIITVYS-DKSF 68
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
V PP S LIKK +G+E GS + + VG ++ E++++IA++K + + A + AA K
Sbjct: 69 SFIVKTPPASILIKKAIGIESGSKKSNTDKVGTISKEKLMEIARIKMSDLNAKSESAAFK 128
Query: 125 EVIGTALSMGVTVE 138
+ G+A SMGV VE
Sbjct: 129 IIAGSARSMGVEVE 142
>emb|CAA23621.1| (V00339) rplK (L11) [Escherichia coli]
Length = 142
Score = 85.0 bits (207), Expect = 4e-16
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
V++ V G A P PP+GPA+G G+N+ + N T G+ +PV I V + F
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY-ADRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP + L+KK G++ GSG+P + VG ++ Q+ +IA+ K M ++A +
Sbjct: 68 TFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTR 127
Query: 125 EVIGTALSMGVTVE 138
+ G+A SMG+ VE
Sbjct: 128 SIEGSARSMGLVVE 141
>gb|AAC43081.1| (U00006) 50S ribosomal subunit protein L11 [Escherichia coli]
Length = 142
Score = 85.0 bits (207), Expect = 4e-16
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQF 64
V++ V G A P PP+GPA+G G+N+ + N T G+ +PV I V + F
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY-ADRSF 67
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
PP + L+KK G++ GSG+P + VG ++ Q+ +IA+ K M ++A +
Sbjct: 68 TFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTR 127
Query: 125 EVIGTALSMGVTVE 138
+ GT SMG+ VE
Sbjct: 128 SIEGTXRSMGLVVE 141
>gi|11467549 50S ribosomal protein L11 [Odontella sinensis]
>gi|1350605|sp|P49549|RK11_ODOSI CHLOROPLAST 50S
RIBOSOMAL PROTEIN L11 >gi|7440796|pir||S78354 ribosomal
protein L11, chloroplast - Odontella sinensis
chloroplast >gi|1185244|emb|CAA91727.1| (Z67753) 50S
ribosomal protein L11 [Odontella sinensis]
Length = 141
Score = 81.9 bits (199), Expect = 4e-15
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
++++ + GKATP PP+GPA+G G+N+ + N T + G+ +PV+I V + +
Sbjct: 8 LIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTTDKTGLIIPVEISVYE-DRSY 66
Query: 65 EIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAK 124
+ PP S L+ ++KGS P VG++T Q+ +IA +K + + +A K
Sbjct: 67 TFILKTPPASVLLANAAKIKKGSSTPNRVNVGSITKSQLEEIASIKLPDLNTTKISSAMK 126
Query: 125 EVIGTALSMGVTV 137
V GTA +MG+++
Sbjct: 127 IVEGTARNMGISI 139
>gi|11441233 CGI-113 protein [Homo sapiens]
Length = 172
Score = 81.9 bits (199), Expect = 4e-15
Identities = 44/124 (35%), Positives = 76/124 (60%), Gaps = 6/124 (4%)
Query: 19 PPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVTKQFEIEVGVPPTSQLI 77
PPLGP +G G+++ Q + NE TK+ G+ +P KI+V P + FEI++G P S +
Sbjct: 13 PPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKP-DRTFEIKIGQPTVSYFL 71
Query: 78 KKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMK-RNQMLAL---TLKAAAKEVIGTALSM 133
K G+EKG+ + + G +T++ V +IA++K +++ AL L + + +IG+A S+
Sbjct: 72 KAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSL 131
Query: 134 GVTV 137
G+ V
Sbjct: 132 GIRV 135
>gi|6320625 Ribosomal protein L12B (L15B) (YL23); Rpl12bp [Saccharomyces
cerevisiae] >gi|6320781|ref|NP_010860.1| Ribosomal
protein L12A (L15A) (YL23); Rpl12ap [Saccharomyces
cerevisiae] >gi|132656|sp|P17079|RL12_YEAST 60S
RIBOSOMAL PROTEIN L12 (L15) (YL23) >gi|83476|pir||S13665
ribosomal protein L12.e, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|4386|emb|CAA35891.1|
(X51519) ribosomal protein L15 (AA 1-165) [Saccharomyces
cerevisiae] >gi|4388|emb|CAA35892.1| (X51520) ribosomal
protein L15 (AA 1-165) [Saccharomyces cerevisiae]
>gi|603264|gb|AAB65033.1| (U18795) Rpl15bp: 60S
ribosomal protein L15B [Saccharomyces cerevisiae]
>gi|927686|gb|AAB64852.1| (U33007) Rpl15ap: 60S
ribosomal protein YL15, identical to Rpl15bp; YDR418W;
CAI: 0.77 [Saccharomyces cerevisiae]
Length = 165
Score = 81.1 bits (197), Expect = 6e-15
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 12 GGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFEIEVGVP 71
GG+ L P IGPLGL+ K+V + I +ATKEF G++V V++ + +Q V VP
Sbjct: 19 GGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQ--NRQAAASV-VP 75
Query: 72 PTSQLI----KKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKEVI 127
S L+ K+ K KH+ GN+ ++++I+IA+ R++ TL + KE++
Sbjct: 76 SASSLVITALKEPPRDRKKDKNVKHS--GNIQLDEIIEIARQMRDKSFGRTLASVTKEIL 133
Query: 128 GTALSMGVTVEGKDPREVQREIDEG 152
GTA S+G V+ K+P ++ I+ G
Sbjct: 134 GTAQSVGCRVDFKNPHDIIEGINAG 158
>gi|6324144 mitochondrial ribosomal protein of the large subunit; Mrpl19p
[Saccharomyces cerevisiae]
>gi|1730814|sp|P53875|YNS5_YEAST PUTATIVE 60S
MITOCHONDRIAL RIBOSOMAL PROTEIN YNL185C
>gi|2133050|pir||S63140 ribosomal protein L11,
mitochondrial - yeast (Saccharomyces cerevisiae)
>gi|1302170|emb|CAA96078.1| (Z71461) ORF YNL185c
[Saccharomyces cerevisiae]
Length = 158
Score = 79.6 bits (193), Expect = 2e-14
Identities = 47/152 (30%), Positives = 80/152 (51%), Gaps = 17/152 (11%)
Query: 2 KKQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVPVKIIVDPV 60
K +V+++V G+A P PP+GPA+G G+ + N + + G+ VPV I + P
Sbjct: 6 KNVIVKLIVGAGQAAPSPPVGPALGSKGIKAIDFCKEFNARSANYQPGVPVPVLITIKP- 64
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPK-------------HNIVGNLTMEQVIKIA 107
+ F E+ PPT L+ K L ++KG G+P +G L+++ V +IA
Sbjct: 65 DRTFTFEMKSPPTGYLLLKALKMDKGHGQPNVGTMLGSAPAKGPTRALGELSLKHVYEIA 124
Query: 108 KMKRN--QMLALTLKAAAKEVIGTALSMGVTV 137
K+K++ + L ++ K ++G A SMG+ V
Sbjct: 125 KIKKSDERHSLLEMEGIVKSIVGVAKSMGIKV 156
>emb|CAA60718.1| (X87296) ribosomal protein L11 [Arabidopsis thaliana]
Length = 222
Score = 79.6 bits (193), Expect = 2e-14
Identities = 47/139 (33%), Positives = 80/139 (56%), Gaps = 11/139 (7%)
Query: 5 VVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQF 64
V+++ +E GKATP PP+GPA+G G+N+ N T + AG +PV+I V F
Sbjct: 77 VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITV------F 130
Query: 65 EIEVG-VPPTSQLIK----KELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTL 119
+I + +L++ K G+EKGS +P+ + VG +T++ V IA K + T+
Sbjct: 131 DIRASRLFSRPRLLRFCCLKLQGVEKGSKDPQQDKVGVITIDHVRTIAAEKLPDLNCTTI 190
Query: 120 KAAAKEVIGTALSMGVTVE 138
++A + + GTA +MG+ ++
Sbjct: 191 ESAMRIIAGTAANMGIDID 209
>sp|Q9ZE24|RL11_RICPR 50S RIBOSOMAL PROTEIN L11 >gi|7440792|pir||E71723 ribosomal protein
L11 - Rickettsia prowazekii >gi|3860703|emb|CAA14604.1|
(AJ235270) 50S RIBOSOMAL PROTEIN L11 (rplK) [Rickettsia
prowazekii]
Length = 145
Score = 77.3 bits (187), Expect = 9e-14
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 3 KQVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFA-GMQVPVKIIVDPVT 61
K + +++ ATP PP+GPA+G +N+ N+AT G+ +P I V
Sbjct: 7 KGYINLIIPAAGATPAPPIGPALGQRKVNIAAFCKDFNDATNGMEKGVPLPTVITVYE-D 65
Query: 62 KQFEIEVGVPPTSQLIKKELGLEKGSGEPKHN-IVGNLTMEQVIKIAKMKRNQMLALTLK 120
F +V PP S +KK + KGS K +VG +T++ +IAK+K + + ++
Sbjct: 66 SSFSFKVKTPPASYFLKKYAKITKGSSATKKEAMVGKVTIDDCREIAKLKISDLNTKNIE 125
Query: 121 AAAKEVIGTALSMGVTVEG 139
AA K + G+A SMG+ V G
Sbjct: 126 AATKIICGSAASMGLEVVG 144
>sp|P47327|RL11_MYCGE 50S RIBOSOMAL PROTEIN L11 >gi|1361792|pir||I64208 ribosomal protein
L11 - Mycoplasma genitalium >gi|3844668|gb|AAC71299.1|
(U39689) ribosomal protein L11 (rpl11) [Mycoplasma
genitalium]
Length = 137
Score = 75.7 bits (183), Expect = 3e-13
Identities = 48/134 (35%), Positives = 76/134 (55%), Gaps = 6/134 (4%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
++ ++ + GG+A PGP A+ +G+N+ + + NE TK+ G +P II K
Sbjct: 8 RIAKINLIGGQAKPGP----ALASVGINMGEFTKQFNEKTKDRQGETIPC-IITAFNDKS 62
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F + P S LIK+ LEKG+ K IVG ++++Q +IA+ K + A T++AA
Sbjct: 63 FTFVLKTTPVSNLIKQAAKLEKGAKNAK-TIVGKISLQQAKEIAQYKLVDLNANTVEAAL 121
Query: 124 KEVIGTALSMGVTV 137
K V+GTA MG+ V
Sbjct: 122 KMVLGTAKQMGIEV 135
>pir||T41746 ribosomal protein L11 homolog - Arabidopsis thaliana
>gi|5830791|emb|CAB54877.1| (AL117188) ribosomal protein
L11 homolog [Arabidopsis thaliana]
>gi|7270500|emb|CAB80265.1| (AL161587) ribosomal protein
L11 homolog [Arabidopsis thaliana]
Length = 155
Score = 75.7 bits (183), Expect = 3e-13
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF---AGMQVPVKIIVDPVTK 62
+ + V G A P PP+GPA+G LN+ N T+++ M V + D
Sbjct: 17 IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKD---N 73
Query: 63 QFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLA--LTLK 120
FE V P S IKK G++KGS P H V L++ V +IAK+K+ + L+
Sbjct: 74 SFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVKQTDPFCQYMPLE 133
Query: 121 AAAKEVIGTALSMGVTV 137
+ K +IGTA SMG+ +
Sbjct: 134 SICKSIIGTANSMGIKI 150
>sp|P75550|RL11_MYCPN 50S RIBOSOMAL PROTEIN L11 >gi|2146591|pir||S73938 ribosomal protein
L11 - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674314|gb|AAB96260.1| (AE000058) ribosomal protein
L11 [Mycoplasma pneumoniae]
Length = 137
Score = 74.9 bits (181), Expect = 5e-13
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQ 63
++ ++ + GG+A PGP A+ +G+N+ + + NE TK+ G +P +I K
Sbjct: 8 RIAKINLLGGQAKPGP----ALASVGINMGEFTKQFNEKTKDKQGEMIPC-VITAYNDKS 62
Query: 64 FEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAA 123
F+ + P S L+K+ LEKG+ K IVG +TM + +IA+ K + A T++AA
Sbjct: 63 FDFILKTTPVSILLKQAAKLEKGAKNAK-TIVGKITMAKAKEIAQYKLVDLNANTVEAAL 121
Query: 124 KEVIGTALSMGVTV 137
K V+GTA MG+ V
Sbjct: 122 KMVLGTAKQMGIEV 135
>pir||H82876 ribosomal protein L11 UU541 [imported] - Ureaplasma urealyticum
>gi|6899546|gb|AAF30954.1|AE002153_2 (AE002153)
ribosomal protein L11 [Ureaplasma urealyticum]
Length = 150
Score = 74.1 bits (179), Expect = 8e-13
Identities = 44/141 (31%), Positives = 75/141 (52%), Gaps = 8/141 (5%)
Query: 2 KKQVVEVL---VEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVD 58
KK+V + + GG+A PGP A+ +G+N+ + N+ TK+ G +PV II
Sbjct: 5 KKEVTRIAKLNLIGGQAKPGP----ALASVGINMAEFTKSFNDKTKDQNGKVIPV-IITA 59
Query: 59 PVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALT 118
K F+ + P + L+K ++ G+ +PK V ++ EQ ++IA+ K M A
Sbjct: 60 YKDKSFDYVIKTTPVTFLLKDIAKIKSGAKDPKKQTVATISKEQALEIARYKLIDMTAYD 119
Query: 119 LKAAAKEVIGTALSMGVTVEG 139
+AA + + G+A MG+ +EG
Sbjct: 120 EEAALRMIAGSAKQMGIVIEG 140
>sp|P34264|YKAE_CAEEL PROBABLE RIBOSOMAL PROTEIN B0303.15 IN CHROMOSOME III
>gi|283555|pir||S27795 ribosomal protein L11 homolog -
Caenorhabditis elegans >gi|156201|gb|AAA27905.1|
(M77697) ribosomal protein L11 [Caenorhabditis elegans]
Length = 195
Score = 73.7 bits (178), Expect = 1e-12
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 2 KKQVVEVL--------VEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVP 52
KK++V+V+ ++ A+ PPLGP +G GLNV + N+ T F G+ +P
Sbjct: 11 KKEIVKVVHGALLRTNIKAQMASAAPPLGPQLGQRGLNVANFCKEFNKETGHFKQGVPLP 70
Query: 53 VKIIVDPVTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMK-R 111
+I V P + +++E+ P T+ L+K+ G+ +G K IVG LT++ + +IAK+K R
Sbjct: 71 TRITVKP-DRTYDLEICTPTTTWLLKQAAGIGRGKAS-KDEIVGKLTVKHLYEIAKIKSR 128
Query: 112 NQMLA-LTLKAAAKEVIGTALSMGVTVEGKD 141
++ L + L+ + +I T ++G+ V+ D
Sbjct: 129 DKALQHVPLEQICRMLIKTCRTLGIDVQYHD 159
>gi|11466497 ribosomal protein L11 [Reclinomonas americana]
>gi|7440806|pir||S78128 ribosomal protein L11 -
Reclinomonas americana (ATCC 50394) mitochondrion
>gi|2258327|gb|AAD11861.1| (AF007261) ribosomal protein
L11 [Reclinomonas americana]
Length = 145
Score = 73.4 bits (177), Expect = 1e-12
Identities = 43/133 (32%), Positives = 72/133 (53%), Gaps = 5/133 (3%)
Query: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF---AGMQVPVKIIVDPVTK 62
+ + +E GKA+P PP+GPA+G G+N+ Q + N K+ G+ VP I V K
Sbjct: 8 IRLEIESGKASPSPPVGPALGLRGVNIMQFCKEFNNRCKQLNIKDGVPVPTIITVYD-DK 66
Query: 63 QFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAA 122
F ++ P + IKK L + KG+ +P N+ + + +IA++K+ L +K+
Sbjct: 67 TFSFKMKTPSITYFIKKHLEISKGASKPGKENFLNIDIRSLYEIAEIKKIDS-NLDIKSI 125
Query: 123 AKEVIGTALSMGV 135
K +IG+ SMG+
Sbjct: 126 CKSLIGSVKSMGI 138
>gb|AAC84136.1| (AF101423) ribosomal protein L12 [Cichorium intybus]
Length = 142
Score = 72.2 bits (174), Expect = 3e-12
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPV 60
QVV+V V GG+ L P IGPLGL+ K++ + I E K++ G++V VK+ V
Sbjct: 9 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVX-- 66
Query: 61 TKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHNIV--GNLTMEQVIKIAKMKRNQMLALT 118
+Q ++ V VP + L+ K L + + NI GN++++ VI IAK+ R + +A
Sbjct: 67 NRQAKVSV-VPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIXIAKVMRPRSMAKE 125
Query: 119 LKAAAKEVIGTALSMG 134
L+ KE++GT +S+G
Sbjct: 126 LQGTVKEILGTCVSVG 141
>gb|AAF55063.1| (AE003705) CG3351 gene product [Drosophila melanogaster]
Length = 196
Score = 68.3 bits (164), Expect = 4e-11
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 10 VEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEF-AGMQVPVKIIVDPVTKQFEIEV 68
+ G A GPPLGP +G +N+ N T E G+ +P +I V+ + +++ +
Sbjct: 28 IPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEGVPLPCRISVNS-DRSYDLAI 86
Query: 69 GVPPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIA--KMKRNQMLALTLKAAAKEV 126
PP + +K+ G+++G+ P + G +T++ + +IA K++ + LT++ + +
Sbjct: 87 HHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEML 146
Query: 127 IGTALSMGVTVEGKDPREVQREIDEGVYDELFEK 160
I A + G+ +V REID Y E E+
Sbjct: 147 ISIARTCGI--------KVVREIDPAAYGEFLEE 172
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.311 0.134 0.360
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59264688
Number of Sequences: 2977
Number of extensions: 2269210
Number of successful extensions: 8798
Number of sequences better than 1.0e-10: 96
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 8676
Number of HSP's gapped (non-prelim): 96
length of query: 164
length of database: 189,106,746
effective HSP length: 59
effective length of query: 105
effective length of database: 153,796,013
effective search space: 16148581365
effective search space used: 16148581365
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 162 (67.5 bits)