BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2357 (PAB2357) DE:Hypothetical protein
         (224 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (st...   464  e-130
pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii ...   430  e-120

>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
           >gi|5457707|emb|CAB49198.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 224
           
 Score =  464 bits (1181), Expect = e-130
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MMLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWK 60
           MMLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWK
Sbjct: 1   MMLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWK 60

Query: 61  GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120
           GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL
Sbjct: 61  GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120

Query: 121 AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNFYRLDVTKERAVG 180
           AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNFYRLDVTKERAVG
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNFYRLDVTKERAVG 180

Query: 181 PLINVKIWIMEDGRRWDYKEAFGIKVKPRRKEGEAEEGARKDSH 224
           PLINVKIWIMEDGRRWDYKEAFGIKVKPRRKEGEAEEGARKDSH
Sbjct: 181 PLINVKIWIMEDGRRWDYKEAFGIKVKPRRKEGEAEEGARKDSH 224


>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
           >gi|3258340|dbj|BAA31023.1| (AP000007) 334aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 224
           
 Score =  430 bits (1095), Expect = e-120
 Identities = 204/223 (91%), Positives = 215/223 (95%)

Query: 1   MMLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWK 60
           MMLITTSHRPTRRTRSFGHDLERV PNSLY+TRGKKTIQELLMEAYDRGYERLLIINVWK
Sbjct: 1   MMLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWK 60

Query: 61  GNPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTTAKRVGLDHL 120
           GNPLKMTFIKVHP+DWGYLGYLYLHGVKLQREMGF+GLNPIREDMPLV+TTAKRVGLDHL
Sbjct: 61  GNPLKMTFIKVHPEDWGYLGYLYLHGVKLQREMGFKGLNPIREDMPLVITTAKRVGLDHL 120

Query: 121 AFAQVFSELTTGKFVPRGDKSLLSIADKYNTDVLAVIERHPRGIVVNFYRLDVTKERAVG 180
           AFAQVFSELTTGKFVPRGDKSLLSIAD+YNTDVLAVIERHPRGIV+NFYRLD+TK+R VG
Sbjct: 121 AFAQVFSELTTGKFVPRGDKSLLSIADRYNTDVLAVIERHPRGIVINFYRLDITKDRPVG 180

Query: 181 PLINVKIWIMEDGRRWDYKEAFGIKVKPRRKEGEAEEGARKDS 223
           PLINVKIWIMEDGRRWDYKEAFGIKV PRR+E E + G  K+S
Sbjct: 181 PLINVKIWIMEDGRRWDYKEAFGIKVPPRRREFEGKRGEGKNS 223


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.141    0.428 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84553500
Number of Sequences: 2977
Number of extensions: 3493445
Number of successful extensions: 6014
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6012
Number of HSP's gapped (non-prelim): 2
length of query: 224
length of database: 189,106,746
effective HSP length: 51
effective length of query: 173
effective length of database: 158,583,909
effective search space: 27435016257
effective search space used: 27435016257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)