BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2362 879778 880260 161 !not a gene!
         (161 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71101 hypothetical protein PH1073 - Pyrococcus horikoshii ...   235  2e-61

>pir||F71101 hypothetical protein PH1073 - Pyrococcus horikoshii
           >gi|3257489|dbj|BAA30172.1| (AP000004) 215aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 215
           
 Score =  235 bits (594), Expect = 2e-61
 Identities = 121/156 (77%), Positives = 133/156 (84%)

Query: 2   PFLMSLPTGFPSFSSSAIKSRTSSHIWNAIPTFLPHLDRASMYSSFSVPTIPPTLAEASK 61
           PFLMSLPTGFPSF SSAI+SRTSS IWNAIPTFLP L+RA +YSS SVP +PPT AEAS 
Sbjct: 60  PFLMSLPTGFPSFFSSAIRSRTSSQIWNAIPTFLPQLERAFIYSSLSVPIMPPTFAEASN 119

Query: 62  RAPVFPLIILMYSSMLTISLFSNSKSKACPSQSSFDALTIVSRTLAFFSGEISALDIASK 121
            APVFPLII MYSS++T+  FSNS+S A PSQSSFDA TI S TLAFFSG ISAL  ASK
Sbjct: 120 NAPVFPLIISMYSSIVTVLFFSNSRSLAWPSQSSFDAFTITSNTLAFFSGGISALATASK 179

Query: 122 ALLNNKSPAKIAMFIPQTLCTVGFPLLVSSMSIMSS 157
           ALL ++SPAKIAMF PQ LCTVGFPLLVSS+SI+SS
Sbjct: 180 ALLKSRSPAKIAMFTPQILCTVGFPLLVSSISIISS 215


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.129    0.372 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52112362
Number of Sequences: 2977
Number of extensions: 1730516
Number of successful extensions: 4673
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4672
Number of HSP's gapped (non-prelim): 1
length of query: 161
length of database: 189,106,746
effective HSP length: 57
effective length of query: 104
effective length of database: 154,992,987
effective search space: 16119270648
effective search space used: 16119270648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)