BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2363 (appC-2) DE:OLIGOPEPTIDE TRANSPORT INTEGRAL MEMBRANE
PROTEIN.
(306 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75142 oligopeptide transport integral membrane protein. PA... 619 e-176
pir||C72282 oligopeptide ABC transporter, permease protein - The... 369 e-101
pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain ... 345 5e-94
pir||C71163 probable oligopeptide transport system permease prot... 340 9e-93
pir||G72428 oligopeptide ABC transporter, permease protein - The... 252 3e-66
pir||F82301 peptide ABC transporter, permease protein VC0618 [im... 183 3e-45
pir||D71130 probable oligopeptide transport permease protein APP... 182 4e-45
pir||H75026 oligopeptide abc transporter, permease protein (appc... 175 6e-43
gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus sol... 173 2e-42
pir||A72421 oligopeptide ABC transporter, permease protein - The... 172 4e-42
pir||B72284 oligopeptide ABC transporter, permease protein - The... 169 5e-41
pir||H71211 probable oligopeptide transport system permease prot... 166 2e-40
gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana] 166 4e-40
pir||T35981 probable peptide transport permease - Streptomyces c... 165 7e-40
dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permeas... 157 2e-37
gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus] 155 8e-37
sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 152 4e-36
pir||E75202 dipeptide abc transporter, dipeptide-binding protein... 151 9e-36
emb|CAC12448.1| (AL445067) oligopeptide transport system, permea... 151 9e-36
emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter... 150 2e-35
pir||C82356 peptide ABC transporter, permease protein VC0173 [im... 150 2e-35
pir||H72536 probable oligopeptide transport system permease prot... 149 4e-35
pir||C72393 oligopeptide ABC transporter, permease protein - The... 149 5e-35
gi|11499358 dipeptide ABC transporter, permease protein (dppC) [... 148 6e-35
sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 147 1e-34
emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methan... 147 2e-34
pir||A75118 dipeptide abc transporter, permease protein (dppc) P... 146 2e-34
pir||E71014 probable dipeptide transport system permease protein... 145 7e-34
gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus sol... 144 2e-33
pir||T34756 oligopeptide transport integral membrane protein - S... 143 3e-33
pir||C72617 probable dipeptide transport system permease protein... 143 3e-33
dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) ... 142 6e-33
pir||D72424 oligopeptide ABC transporter, permease protein - The... 142 6e-33
pir||G72215 oligopeptide ABC transporter, permease protein - The... 141 1e-32
pir||E72720 probable oligopeptide transport system permease prot... 140 2e-32
sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 139 5e-32
pir||E72371 oligopeptide ABC transporter, permease protein - The... 137 2e-31
sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 136 3e-31
pir||D64557 dipeptide ABC transporter, permease protein - Helico... 136 4e-31
sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 136 4e-31
sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 135 6e-31
pir||C38447 sporulation initiation protein spo0KC - Bacillus sub... 135 6e-31
dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permeas... 134 1e-30
pir||S75778 oligopeptide transport system permease protein appC ... 133 2e-30
sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 132 4e-30
sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 132 5e-30
pir||E72289 oligopeptide ABC transporter, permease protein - The... 132 5e-30
dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permeas... 132 5e-30
pir||A75381 peptide ABC transporter, permease protein - Deinococ... 132 7e-30
gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-... 131 1e-29
emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis] 131 2e-29
pir||JC5121 oligopeptide permease-like protein - Synechococcus s... 131 2e-29
sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 130 2e-29
sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 130 3e-29
pir||C72367 oligopeptide ABC transporter, permease protein - The... 129 3e-29
pir||D72300 oligopeptide ABC transporter, permease protein - The... 127 1e-28
dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permeas... 127 1e-28
pir||D82242 oligopeptide ABC transporter, permease protein VC109... 127 2e-28
emb|CAC11409.1| (AL445063) probable dipeptide transport system p... 126 4e-28
gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1] 125 5e-28
gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC... 125 7e-28
sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 125 9e-28
gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; Dp... 124 1e-27
gi|10954709 hypothetical ABC-transporter gene~similar to dppC ge... 124 1e-27
pir||T35940 probable transport permease protein - Streptomyces c... 123 2e-27
dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [O... 123 2e-27
pir||D82442 probable peptide ABC transporter, permease protein V... 123 3e-27
gb|AAC69839.1| (AF076683) oligopeptide transporter putative memb... 123 3e-27
gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T... 122 4e-27
pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC... 122 6e-27
pir||E75454 peptide ABC transporter, permease protein - Deinococ... 122 7e-27
pir||T44599 oligopeptide transport system permease protein [impo... 121 1e-26
pir||D83082 probable permease of ABC transporter PA4504 [importe... 120 2e-26
pir||D70141 oligopeptide ABC transporter, permease protein (oppC... 120 2e-26
gb|AAC67219.1| (U78968) transmembrane transport protein DppC [St... 120 2e-26
pir||C75573 peptide ABC transporter, permease protein - Deinococ... 119 4e-26
gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borre... 119 5e-26
sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 118 6e-26
sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 118 6e-26
gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [... 118 6e-26
gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC... 117 1e-25
pir||E83419 probable permease of ABC transporter PA1808 [importe... 116 4e-25
gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola] 114 2e-24
pir||A83389 probable permease of ABC transporter PA2060 [importe... 114 2e-24
sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 113 4e-24
gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis] 113 4e-24
pir||C64551 oligopeptide ABC transporter, permease protein - Hel... 111 8e-24
gb|AAB38742.1| (U78885) transport system permease homolog [Liste... 111 1e-23
pir||A70789 probable peptidetransport system permease - Mycobact... 110 2e-23
pir||D70431 oligopeptide transport system permease - Aquifex aeo... 110 2e-23
pir||F71957 ABC transporter, permease - Helicobacter pylori (str... 110 2e-23
dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus] 110 2e-23
emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related prote... 109 4e-23
sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 109 6e-23
dbj|BAB04288.1| (AP001509) nickel transport system (permease) [B... 108 7e-23
gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T... 108 7e-23
gi|10954944 Probable accE [Agrobacterium tumefaciens] >gi|649829... 108 9e-23
pir||G75529 peptide ABC transporter, permease protein - Deinococ... 107 2e-22
pir||C71510 probable oligopeptide permease - Chlamydia trachomat... 106 5e-22
pir||F81668 peptide ABC transporter, permease protein, probable ... 106 5e-22
pir||T03434 probable transport protein accE - Agrobacterium tume... 105 6e-22
pir||C72059 peptide ABC transporter, permease protein, probable ... 103 3e-21
gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; Dp... 102 4e-21
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 101 9e-21
pir||H72451 probable peptide transport system permease protein A... 101 9e-21
pir||T45277 oligopeptide transport integral membrane protein bld... 101 1e-20
gb|AAC18098.1| (AF058302) membrane component of putative ABC tra... 100 2e-20
dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Ba... 100 2e-20
gb|AAG20459.1| (AE005118) oligopeptide transport permease protei... 100 2e-20
sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 99 6e-20
gb|AAC69844.1| (AF076684) oligopeptide transporter putative memb... 97 2e-19
sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 95 9e-19
emb|CAC05749.1| (AL391751) putative peptide transport system int... 93 4e-18
pir||D82170 peptide ABC transporter, permease protein VC1682 [im... 93 5e-18
sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 87 3e-16
pir||D81253 probable peptide ABC-transport system permease prote... 87 3e-16
emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyo... 85 8e-16
emb|CAA68075.1| (X99740) oligopeptide transport system permease ... 85 1e-15
gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonel... 84 2e-15
sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 83 5e-15
pir||B82876 oligopeptide transport system permease protein UU561... 80 3e-14
emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi] 76 4e-13
pir||G81699 peptide ABC transporter, permease protein TC0473 [im... 76 4e-13
gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S7... 76 7e-13
sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 75 2e-12
sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 73 3e-12
gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae] 73 3e-12
dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus] 73 4e-12
>pir||B75142 oligopeptide transport integral membrane protein. PAB2363 -
Pyrococcus abyssi (strain Orsay)
>gi|5458362|emb|CAB49851.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT INTEGRAL MEMBRANE PROTEIN. [Pyrococcus abyssi]
Length = 306
Score = 619 bits (1578), Expect = e-176
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MSLKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTP 60
MSLKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTP
Sbjct: 1 MSLKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTP 60
Query: 61 ALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLL 120
ALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLL
Sbjct: 61 ALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLL 120
Query: 121 IGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTA 180
IGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTA
Sbjct: 121 IGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTA 180
Query: 181 RAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGL 240
RAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGL
Sbjct: 181 RAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGL 240
Query: 241 DFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
DFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN
Sbjct: 241 DFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
Query: 301 PRLRGE 306
PRLRGE
Sbjct: 301 PRLRGE 306
>pir||C72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981774|gb|AAD36296.1|AE001778_17 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 282
Score = 369 bits (936), Expect = e-101
Identities = 181/304 (59%), Positives = 223/304 (72%), Gaps = 24/304 (7%)
Query: 1 MSLKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTP 60
M+ K + LKNKK + + ++AL GP ++P+ + PL F Y P
Sbjct: 1 MTRKEFVHFFLKNKKVIFAICVYAGLIILALVGPYLSPYKD----PLAFVGPGYQPPSKE 56
Query: 61 ALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLL 120
H+LGT++FG+DI+ QL YG+RSS +G+ G LAT++GLL
Sbjct: 57 --------------------HWLGTNTFGQDIFTQLVYGLRSSLFVGVLGGTLATVIGLL 96
Query: 121 IGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTA 180
IGF+AGYKGGW DE+LMM TNI++VIPT+ALLIIIAAYLPYRGV IES+IIGLTAWPWTA
Sbjct: 97 IGFVAGYKGGWFDELLMMFTNILMVIPTLALLIIIAAYLPYRGVFIESIIIGLTAWPWTA 156
Query: 181 RAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGL 240
RAVRAQTLSLK REF+ LA+++ MKIIF +IMPN++SYVFMVFILQFGG+ILAA GL
Sbjct: 157 RAVRAQTLSLKTREFVDLARITARKPMKIIFGEIMPNMMSYVFMVFILQFGGAILAATGL 216
Query: 241 DFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
DFIGLGPTRG+SLGIM+QQA LWNA+ LG WWWAI PG VI +++ LY +N GLDEVFN
Sbjct: 217 DFIGLGPTRGISLGIMMQQATLWNAIQLGMWWWAITPGAVITLMVATLYVMNAGLDEVFN 276
Query: 301 PRLR 304
P+LR
Sbjct: 277 PKLR 280
>pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain Orsay)
>gi|5458957|emb|CAB50444.1| (AJ248287) ABC TRANSPORTER
[Pyrococcus abyssi]
Length = 309
Score = 345 bits (875), Expect = 5e-94
Identities = 162/302 (53%), Positives = 222/302 (72%), Gaps = 2/302 (0%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
L++A +N KFK G ++ L A+ GPL TPF + G Y K G P + LPPM+
Sbjct: 8 LRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMT 67
Query: 67 SD--TIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFI 124
+ TI + V H LGTD G+D+YA+L YG+R+S I + A + T LG+ IG +
Sbjct: 68 RENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLV 127
Query: 125 AGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVR 184
+GYKGG +DE+LMM NIMLVIP++ LLI++AA+L R ++++IIGLT WPW AR+VR
Sbjct: 128 SGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVR 187
Query: 185 AQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIG 244
AQTLSLKNREF++L+K+ GL D++IIF++IMPN+ISY+FM ILQ G+ILA+ LDFIG
Sbjct: 188 AQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIG 247
Query: 245 LGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
LGPT +SLG++LQ+A++ NA+ G+WWW IPPGL+I ++IT L+F+N G++EVFNPRLR
Sbjct: 248 LGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
Query: 305 GE 306
GE
Sbjct: 308 GE 309
>pir||C71163 probable oligopeptide transport system permease protein AppC -
Pyrococcus horikoshii >gi|3256909|dbj|BAA29592.1|
(AP000002) 304aa long hypothetical oligopeptide
transport system permease protein AppC [Pyrococcus
horikoshii]
Length = 304
Score = 340 bits (864), Expect = 9e-93
Identities = 162/300 (54%), Positives = 217/300 (72%), Gaps = 1/300 (0%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
+K+A +N KFK GF ++I + L GPL TPF + G Y + G LPPM+
Sbjct: 4 IKLAFRNNKFKFGFGMLIAFIIFGLIGPLFTPFASDGLYYEQVGKIKIASYSAKTLPPMT 63
Query: 67 SDTIYGPEGI-VNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIA 125
+ I G V V H LGTD G+D+Y +L YG+R+S + A + TI G+ IGF++
Sbjct: 64 RENITTYTGKKVEVLHILGTDKEGKDLYTELVYGLRTSLWVAFLAAIIGTITGITIGFVS 123
Query: 126 GYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRA 185
GYKGG +DE+LMM NIMLVIP++ LLI++AAYL R I+++IIGLT WPW AR+VRA
Sbjct: 124 GYKGGLVDELLMMFVNIMLVIPSIVLLILVAAYLEARSPEIQALIIGLTNWPWVARSVRA 183
Query: 186 QTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGL 245
QTLSLKNREF+H++K+ G+GD++II + I+PN+ISY+FM ILQ G+ILA+ LDFIGL
Sbjct: 184 QTLSLKNREFVHMSKIMGVGDLRIIVEDILPNMISYIFMTGILQVSGAILASATLDFIGL 243
Query: 246 GPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRG 305
GPT +SLG++LQ+A++ NA+ G+WWW IPPGL I ++IT L+FIN GL+EVFNPRLRG
Sbjct: 244 GPTTMVSLGVILQKAIMHNALQFGWWWWFIPPGLFITLIITSLFFINLGLEEVFNPRLRG 303
>pir||G72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980513|gb|AAD35123.1|AE001690_17 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 280
Score = 252 bits (638), Expect = 3e-66
Identities = 127/303 (41%), Positives = 187/303 (60%), Gaps = 25/303 (8%)
Query: 4 KSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALP 63
++ ++ KNKKF +GF I + + +FGP+ D P + Y +P + A
Sbjct: 3 RTMIRPLFKNKKFIIGFSIFLFFLFLGIFGPMFYRVD-----PTEM-TWDYEQPPSSA-- 54
Query: 64 PMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGF 123
H LGTD++GRD+ AQL +G+RSS IG A ++ ++G +IG
Sbjct: 55 -----------------HPLGTDTYGRDVLAQLLHGIRSSLYIGFLAAIISLVIGTIIGS 97
Query: 124 IAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAV 183
+ K G +D+VLM ITNI+L P++ + I+IA+YL R V + +VI+GL WPW ARA+
Sbjct: 98 FSAVKRGIVDDVLMGITNIVLTTPSILIAILIASYLKVRSVEMVAVILGLFQWPWFARAI 157
Query: 184 RAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFI 243
RAQ +S+ +RE+++L+ ++G D++++ + ++P I +Y FM F+L G I+ GL I
Sbjct: 158 RAQLMSVMSREYVYLSVMAGYSDLRLVIEDLIPTIATYAFMSFVLFINGGIMGEAGLSLI 217
Query: 244 GLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
GLGPT+G+SLGIMLQ AVL AV G WWW +PPGL I + L I+T +DEVFNPRL
Sbjct: 218 GLGPTQGISLGIMLQWAVLMEAVRRGLWWWFVPPGLAIVAVTASLLVISTAMDEVFNPRL 277
Query: 304 RGE 306
R E
Sbjct: 278 REE 280
>pir||F82301 peptide ABC transporter, permease protein VC0618 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655051|gb|AAF93784.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 341
Score = 183 bits (459), Expect = 3e-45
Identities = 108/310 (34%), Positives = 167/310 (53%), Gaps = 11/310 (3%)
Query: 3 LKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFD------NMGYYPLKFGNTTYPK 56
+K+ K+ N+ +G I+ + L+A+ PL+T + N YP
Sbjct: 1 MKALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN 60
Query: 57 PGTPALPPMSSD--TIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLA 114
P +++D T+ + H LGT GRD+++Q+ YG R S +G AG
Sbjct: 61 PDGWIAENLATDRRTLAMSK---KADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITV 117
Query: 115 TILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLT 174
L +IG AGY GG ID+ L NIMLVIP LL ++AA++ G ++IIG T
Sbjct: 118 CFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCT 177
Query: 175 AWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSI 234
+W W AR VR+QT++L+ +EF+ A++ G +IIF +I+PN+IS V FI +I
Sbjct: 178 SWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAI 237
Query: 235 LAAVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTG 294
+ + F+GLG +S GIML +++ +G WW + P L + +L+TGL +N
Sbjct: 238 MMEATISFLGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFA 297
Query: 295 LDEVFNPRLR 304
+DE+ NP+LR
Sbjct: 298 VDEIANPQLR 307
>pir||D71130 probable oligopeptide transport permease protein APPC - Pyrococcus
horikoshii >gi|3257219|dbj|BAA29902.1| (AP000003) 283aa
long hypothetical oligopeptide transport permease
protein APPC [Pyrococcus horikoshii]
Length = 283
Score = 182 bits (458), Expect = 4e-45
Identities = 102/287 (35%), Positives = 160/287 (55%), Gaps = 29/287 (10%)
Query: 18 VGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIV 77
+G I+++++ +IAL PL+ PL +T P LPP
Sbjct: 20 IGLILLLVLVVIALITPLL---------PLPDPQST---DFQPFLPPSKD---------- 57
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
H +GTD+ GRDI++++ +G R+S L+G+ A GL+ I+G+L+G +AGY GG ID++L
Sbjct: 58 ---HPMGTDNLGRDIFSRVLWGTRTSLLVGLVAAGLSAIIGVLVGGVAGYYGGTIDDILS 114
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIH 197
IT I LVIP L +++ + + I +++GL WP AR +RAQ LSLK REFI
Sbjct: 115 RITEIFLVIPGFFLALLVVSIFGSSLLNI-MIVLGLLIWPSNARLMRAQALSLKEREFIQ 173
Query: 198 LAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIML 257
+++G+ D++I+ I+PN I + LQ G+I+ GL FIGLG +S G M+
Sbjct: 174 ALRVAGVSDLRIVLRHIIPNGIQPIIANTFLQMAGAIITEAGLSFIGLGDPNVVSWGKMI 233
Query: 258 QQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ ++ YWW I PG+ + + + L + GL + NP+LR
Sbjct: 234 YEGQIYITT---YWWVPIFPGVFLVLTVLALNLLGDGLLTLLNPKLR 277
>pir||H75026 oligopeptide abc transporter, permease protein (appc) PAB1195 -
Pyrococcus abyssi (strain Orsay)
>gi|5459168|emb|CAB50654.1| (AJ248288) oligopeptide ABC
transporter, permease protein (appC) [Pyrococcus abyssi]
Length = 477
Score = 175 bits (439), Expect = 6e-43
Identities = 87/224 (38%), Positives = 128/224 (56%), Gaps = 1/224 (0%)
Query: 82 YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITN 141
Y+GTD GRD++A L +G R S +IGI+ L+ + G+L G + Y GGW DE++M
Sbjct: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
Query: 142 IMLVIPTMALLIIIA-AYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
M IPT+ +LI++A A+ + +GI +++ + W AR R+ L +K + ++ A
Sbjct: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQA 260
G G +IIF IMP ++ Y F L G++L GL ++GLG ++ G +L A
Sbjct: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDA 431
Query: 261 VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
NA GYWWW IPPGL IA++ + T LD V NPRLR
Sbjct: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
>gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 290
Score = 173 bits (435), Expect = 2e-42
Identities = 104/299 (34%), Positives = 167/299 (55%), Gaps = 21/299 (7%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
L++ NKK +VG II + LIA+FG +I +PK T +LPP S
Sbjct: 10 LRLLWDNKKSRVGLIITVFYILIAIFGQII-----------------FPK--TYSLPP-S 49
Query: 67 SDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAG 126
TI+ P + N GT F I Q+ G +S I AG AT++G+++G IAG
Sbjct: 50 PTTIFMPPQLSNFYLIFGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAG 109
Query: 127 YKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQ 186
Y GG ID +LM IT+I+L +P++ L+III + S+I+ +T+W ARAVR+Q
Sbjct: 110 YLGGIIDNILMGITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWAGLARAVRSQ 169
Query: 187 TLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG 246
L ++N + + ++ GL IIF +++P + SY+ + +I ++ A VGL ++G+
Sbjct: 170 VLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVL 229
Query: 247 PTRGMSLGIMLQQAVLWNAVTLG-YWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
P + G M+QQA+ + A G ++ P +V+A ++GL ++ G+DE+ NPR+R
Sbjct: 230 PYNPNNWGAMIQQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIR 288
>pir||A72421 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980561|gb|AAD35167.1|AE001694_3 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 287
Score = 172 bits (432), Expect = 4e-42
Identities = 94/308 (30%), Positives = 166/308 (53%), Gaps = 32/308 (10%)
Query: 1 MSLKSTLKIALKNKKFKVGFIIVIIM---ALIALFGPLITPFDNMGYYPLKFGNTTYPKP 57
M LK L++ +F+ GFI+++++ ++++ F P Y P + P+
Sbjct: 1 MERMQVLKDLLRDTRFRFGFIVLLVLLTLSILSFFSP---------YNPYLWNQV--PRD 49
Query: 58 GTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATIL 117
P P H LGT+S G+DI+ +LT+ +R+S ++ + AG ++ I+
Sbjct: 50 LPPHWP-----------------HILGTNSMGQDIFWKLTFAVRNSLVMSLIAGLVSRII 92
Query: 118 GLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYR-GVGIESVIIGLTAW 176
+++G IAGYKGG D VL +++ LVIP +++++A+ + R + + +++G+ W
Sbjct: 93 AMIVGMIAGYKGGAADRVLTFLSDSFLVIPLFIIIVLVASIVKGRLSLPMLGLLLGVFGW 152
Query: 177 PWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILA 236
W AR +R+Q LSL+ R+F + A LSG + I+F + +P +I +F I +I
Sbjct: 153 AWDARVIRSQVLSLRERDFTYTALLSGSKALSIVFKEYLPFLIPLIFATLIGNMSWAIGM 212
Query: 237 AVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLD 296
+ L +G+ +LG MLQ ++ + A+ LGYWWW + P L L LY I+ +
Sbjct: 213 EITLAILGVSNLDIPTLGTMLQWSINYQALLLGYWWWVLTPVLTSIFLFIALYLISISIS 272
Query: 297 EVFNPRLR 304
E +PR+R
Sbjct: 273 EYLDPRMR 280
>pir||B72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981748|gb|AAD36272.1|AE001776_8 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 291
Score = 169 bits (423), Expect = 5e-41
Identities = 91/297 (30%), Positives = 165/297 (54%), Gaps = 30/297 (10%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
++ +F V FI ++ + +++L ++P+D + Y + G LPP
Sbjct: 13 RDYRFTVAFIALLFLLVLSLLS-YVSPYDPVSIYQVPRG-----------LPP------- 53
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
+ H GT+ G+D++ +LT+ +R+S LI + + I+ +++G ++GYKGG
Sbjct: 54 ------SFEHPFGTNWLGQDVFWRLTFAVRNSLLIAVITAFFSRIIAIIVGIVSGYKGGA 107
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLP--YRGVGIESVIIGLTAWPWTARAVRAQTLS 189
+D+VLM I + +V+P + +LI+I+ L R +++ +W W AR +R+Q LS
Sbjct: 108 LDQVLMTIGDTTMVLPILIVLIVISMILKDWARSFVNLGLLLAFFSWAWDARVIRSQVLS 167
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG--P 247
++ R+F+ +A LSG+ MKI+ Q++P+++ +F FI +I + L ++GLG P
Sbjct: 168 VRERDFVRVAVLSGMSTMKIVGKQLLPHVLPVIFTTFINNMSWAIGMEITLAYLGLGIDP 227
Query: 248 TRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
T +LG MLQ+A+ A+ LG WWW P + +L LY+++ + E +PR R
Sbjct: 228 T-VPTLGTMLQRAITRQALFLGLWWWLAAPIVTAILLFIALYWLSVSISEYLDPRAR 283
>pir||H71211 probable oligopeptide transport system permease protein appC -
Pyrococcus horikoshii >gi|3258404|dbj|BAA31087.1|
(AP000007) 474aa long hypothetical oligopeptide
transport system permease protein appC [Pyrococcus
horikoshii]
Length = 474
Score = 166 bits (417), Expect = 2e-40
Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 3/225 (1%)
Query: 82 YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITN 141
YLGTD GRD++A L +G R S +GI+ L+ ++G+ G A Y GGW DE++M
Sbjct: 249 YLGTDDKGRDLFAGLVWGSRVSLAVGISTAVLSVLIGIFYGVAAAYFGGWTDELMMRFQE 308
Query: 142 IMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWT--ARAVRAQTLSLKNREFIHLA 199
M IPT+ +LI++ Y + + +++ L + W AR R+ +K + ++ A
Sbjct: 309 FMASIPTLPILILLGTYFGGH-IQLWQIVLLLAVFGWVGIARVARSMAYQIKEQTYVEAA 367
Query: 200 KLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQ 259
G G +IIF ++P ++ Y F L G++LA L F+GLG ++ G +L
Sbjct: 368 IALGAGTGRIIFKHMVPQLLPYAFAQMALSVPGAVLAEASLSFLGLGDPTQVTWGQILHD 427
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
A + A GYWWW IPPG+ IA++ I T LD V NPRLR
Sbjct: 428 AQVAGAAVNGYWWWVIPPGIAIALVALTFVLIGTALDRVLNPRLR 472
>gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 292
Score = 166 bits (415), Expect = 4e-40
Identities = 88/304 (28%), Positives = 169/304 (54%), Gaps = 36/304 (11%)
Query: 8 KIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSS 67
K ++ +F V FI+++++ +++ +P+D + Y + G LPP
Sbjct: 9 KDLFRDYRFTVAFIVLVLLIFLSVLSHF-SPYDPIRIYQVPRG-----------LPP--- 53
Query: 68 DTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGY 127
++ H LGT+ G+D++ +LT+ +R+S +I + + + + +G ++GY
Sbjct: 54 ----------SLEHPLGTNWLGQDVFWRLTFAVRNSLMIAVVTALFSRAIAVFVGILSGY 103
Query: 128 KGGWIDEVLMMITNIMLVIPTMALLIIIAAYL-----PYRGVGIESVIIGLTAWPWTARA 182
KGG +D VLM + + +V+P + +LI+I+ L + +G+ ++ +W W AR
Sbjct: 104 KGGAVDRVLMTVGDTTMVLPFLIVLIVISMILRDWTKSFFNLGL---LLAFFSWAWDARV 160
Query: 183 VRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDF 242
+R+Q LSL+ R+F +A LSG+ ++I++ Q++P+++ +F FI +I + L +
Sbjct: 161 IRSQVLSLRERDFTFVAILSGMSTLRIVYKQLLPHVLPIIFTTFINNMAWAIGMEITLAY 220
Query: 243 IGLG--PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
+GLG PT ++G MLQ+A+ A+ LG WWW + P + +L LY+++T + E +
Sbjct: 221 LGLGIDPT-VPTIGTMLQRAIYRQALFLGLWWWLVAPIVAAILLFVALYWLSTSVSEYLD 279
Query: 301 PRLR 304
PR R
Sbjct: 280 PRAR 283
>pir||T35981 probable peptide transport permease - Streptomyces coelicolor
>gi|4464266|emb|CAB37469.1| (AL035559) putative peptide
transport permease [Streptomyces coelicolor A3(2)]
Length = 317
Score = 165 bits (413), Expect = 7e-40
Identities = 101/292 (34%), Positives = 151/292 (51%), Gaps = 23/292 (7%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
K++ G +++ L+AL PL D ++ PG P +
Sbjct: 45 KHRAGVFGLATLVLFVLVALTAPLTVGSDV---------DSVTDAPGQP---------LE 86
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
P G LGTD FGR + L +G R S L+G+ A L+ ++G LIG AG+ GW
Sbjct: 87 SPSG----RFPLGTDQFGRSLLGLLIWGSRVSLLVGLLAAVLSVLIGALIGITAGHFRGW 142
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLK 191
V+M IT+ LV+PT+ L I++A L R +G + IG+T WP TAR VRAQTL+++
Sbjct: 143 YATVMMRITDWFLVMPTLVLAIVLATVLS-RSLGTIVLAIGVTTWPTTARLVRAQTLAVE 201
Query: 192 NREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM 251
+R +I AK G G I+ ++PN++ + L +ILA L F+GLG +
Sbjct: 202 SRPYIERAKALGGGHWHIMSRHVLPNVMPLILAQTTLIISSAILAEATLAFLGLGDPAVV 261
Query: 252 SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
S G +LQ A +V+ G WW+ +PPG+ IA++ ++ V NPRL
Sbjct: 262 SWGGLLQDAREAGSVSSGDWWYLVPPGIGIAVVALAFTLCGRAVEAVLNPRL 313
>dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 157 bits (392), Expect = 2e-37
Identities = 94/294 (31%), Positives = 155/294 (51%), Gaps = 25/294 (8%)
Query: 11 LKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTI 70
+++K VG IIV+++ L+A F ++ P N P PP D
Sbjct: 30 IRSKTGTVGLIIVLVVLLLAAFADVLAPH-----------NPHEVNPAMMLKPPAWLDG- 77
Query: 71 YGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGG 130
+ H+LGTD GRDI++++ YG R S L+G+TA LA ++G+ +G +AG+ GG
Sbjct: 78 ------GSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGG 131
Query: 131 WIDEVLMMITNIMLVIPTMAL-LIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLS 189
W+D M + + L IP + L L+I++ + P GV ++G+T W AR VR + LS
Sbjct: 132 WLDTAFMRLVDSFLSIPNILLALVILSVFGP--GVWTLIFVLGVTNWVNYARLVRGEVLS 189
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PT 248
+K REF+ A+ G+ + ++ ++PN++S ++ L +I+ L F+GLG
Sbjct: 190 IKEREFVKAARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQP 249
Query: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+S G +L + A + WW A PGL I + + G+ F+ L +V +PR
Sbjct: 250 PDISWGGILSDGRDYIATS---WWLATFPGLAITLTVLGIIFLGDWLRDVLDPR 300
>gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 326
Score = 155 bits (387), Expect = 8e-37
Identities = 101/296 (34%), Positives = 148/296 (49%), Gaps = 36/296 (12%)
Query: 17 KVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGI 76
+VGF I++ + + +L G TP++ T +P+ LPP
Sbjct: 36 RVGFYILLGIIVFSLIGVFYTPYNPSA--------TNFPRD----LPPSPQ--------- 74
Query: 77 VNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAG-YKGGWIDEV 135
H LGTD +G DI++QL G +G G + T++ +LIG AG Y ID +
Sbjct: 75 ----HLLGTDDYGHDIFSQLLVGGFPVIGVGFAVGLIGTLIAILIGVTAGLYAETIIDRI 130
Query: 136 LMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVII----GLTAWPWTARAVRAQTLSLK 191
L IT I L+IP + ++ +I AYL + + I LT W W AR +R+ LSL+
Sbjct: 131 LSAITQIFLIIPGILIIELIGAYLGALQFKLGYITILLTLSLTGWAWGARVLRSLVLSLR 190
Query: 192 NREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFI---GLGPT 248
RE+I + L G + +IF+QI+PN + ++ F F +I G FI GLG
Sbjct: 191 RREYILSSDLIGESKLSVIFNQIIPNNLPFIASNF---FFTAIYGIAGFTFIYYFGLGSL 247
Query: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
++ G ML ++ A G WWW IPPGL+I ++ IN G+D V NPRLR
Sbjct: 248 TQVNWGTMLYWSLGGEAYLRGLWWWYIPPGLMIGLVAFSFALINIGIDRVANPRLR 303
>sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
>gi|2126890|pir||I40547 oligopeptide ABC transporter
(permease) appC - Bacillus subtilis
>gi|677947|gb|AAA62360.1| (U20909) AppC [Bacillus
subtilis] >gi|2633494|emb|CAB12997.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 303
Score = 152 bits (381), Expect = 4e-36
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 29/293 (9%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
KNK +G +I+ I+ + A+F PLI P+ P ++
Sbjct: 35 KNKLAILGAVILFIIIMSAVFAPLIAPY------------------------PQEQQSLL 70
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
+ H +GTD FGRDI++++ YG R S L+G + + ++G ++G +AGY G
Sbjct: 71 DKYKAPGLEHLMGTDKFGRDIFSRILYGARVSLLVGFASVVGSILIGTVLGALAGYFRGI 130
Query: 132 IDEVLMMITNIMLVIPTMALLI-IIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSL 190
+D V+M + +I+L IP + LLI ++ + P GV +I LT W TAR VR + LSL
Sbjct: 131 VDAVIMRVVDIVLSIPDIFLLITLVTIFKP--GVDKLILIFCLTGWTTTARLVRGEFLSL 188
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRG 250
++RE++ AK G KIIF I+PN + + + L+ G ILA L ++G G
Sbjct: 189 RSREYVLAAKTIGTKTHKIIFSHILPNALGPIIVSATLKVGSVILAESALSYLGFGIQPP 248
Query: 251 M-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+ S G MLQ A + V + WW+ + PGL I + + F+ GL + +P+
Sbjct: 249 IASWGNMLQDAQNF-TVMIQAWWYPLFPGLFILMTVLCFNFVGDGLRDALDPK 300
>pir||E75202 dipeptide abc transporter, dipeptide-binding protein PAB0093 -
Pyrococcus abyssi (strain Orsay)
>gi|5457577|emb|CAB49068.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 287
Score = 151 bits (378), Expect = 9e-36
Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 33/293 (11%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
KNK +G I+I L+A+F P I P Y P++ KP
Sbjct: 21 KNKLGMIGLGIIIFWVLVAIFAPFIAP-----YSPVEQHLEDRLKPPCEK---------- 65
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
++ GTD FGRDI++++ YG R + ++GI ++ +G+ +G I+GY GG
Sbjct: 66 ---------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGK 116
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGI--ESVIIGLTAWPWTARAVRAQTLS 189
+DE++M +I+ P + L + I A L G G+ + I L W AR VRA+TLS
Sbjct: 117 VDEIIMRAVDIVWAFPALILALAIVAIL---GPGLINAMIAIALVGWASYARVVRAETLS 173
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PT 248
+K FI A+ G D++I+F I+PN++S + ++ +I+ A L F+GLG
Sbjct: 174 VKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQP 233
Query: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
G+ML A ++ VT W++I PGL I L+ G F+ GL + P
Sbjct: 234 PSPDWGLMLSSARVY--VTRAP-WYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
>emb|CAC12448.1| (AL445067) oligopeptide transport system, permease protein appC
related protein [Thermoplasma acidophilum]
Length = 318
Score = 151 bits (378), Expect = 9e-36
Identities = 95/311 (30%), Positives = 162/311 (51%), Gaps = 35/311 (11%)
Query: 1 MSLKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTP 60
+S ++++ I LKN K K GFI+++ + + ++ G P++ Y K
Sbjct: 24 ISFENSMGIVLKNSKSKAGFILLVSIVIFSIIGIFYRPYNPEAYLFAK------------ 71
Query: 61 ALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLL 120
ALPP S VN+ LGT +G+D+++QL G + +I + G T++ +
Sbjct: 72 ALPPNS----------VNI---LGTTGYGQDVFSQLIAGAAPTLMIAFSVGIAGTLISVF 118
Query: 121 IGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLP--YRGVGI--ESVIIGLTAW 176
+G +AG+ ++ + I +I LV+P + L+++ Y ++ +G +I+ +T W
Sbjct: 119 VGLLAGFSSPAVNGAINAIISIFLVVPGVLLIMLFGTYFLGIHQSLGYLPTIIILVITGW 178
Query: 177 PWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILA 236
+ AR R+ TLS+ R++I + L G + IIF QIM I+ V F F S+
Sbjct: 179 AFGARTFRSITLSIAKRDYILSSLLIGESRLSIIFRQIMRAIMPVVVSNF---FFTSMYG 235
Query: 237 AVGLDFI---GLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINT 293
A+GL F+ G+G ++ G ML A+ A G WWW +PP ++I++L+ +N
Sbjct: 236 AMGLTFVEYLGVGNIEQVNWGTMLYWAINNEAYLTGQWWWILPPSIMISLLMFSFILLNF 295
Query: 294 GLDEVFNPRLR 304
GLDE+ NP LR
Sbjct: 296 GLDEMANPSLR 306
>emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 301
Score = 150 bits (375), Expect = 2e-35
Identities = 94/299 (31%), Positives = 158/299 (52%), Gaps = 27/299 (9%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
L+ L+NK + +++++ L ALF PLI P+D L PP
Sbjct: 23 LRGLLRNKLAVLALAVLVLLLLAALFAPLIAPYDPNAQNLL-----------LRLRPPAW 71
Query: 67 SDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAG 126
D G G H LGTD GRD+ +++ +G R S L+G A LA ++G ++G +G
Sbjct: 72 QD---GGSG----AHLLGTDQLGRDMLSRVVHGTRVSLLVGAGAALLAGVIGTVVGLASG 124
Query: 127 YKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQ 186
Y GGW D LM + ++ L P++ L + + +L G+ + V++G T W AR VR++
Sbjct: 125 YFGGWADRTLMRLADVQLAFPSLLLALAVVGFLG-SGLWVVIVVLGFTGWVSYARVVRSE 183
Query: 187 TLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG 246
+SL+ R+F+ A+ G+ D+ I+ ++PN+++ + + L +I+A L ++GLG
Sbjct: 184 VMSLRTRDFVTEARAIGVTDVTIMRRHLLPNVMAPLATIGTLHVAAAIVAEASLSYLGLG 243
Query: 247 -PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTG--LDEVFNPR 302
P ++ G ML L+ + WW A+ PG IA+++T L TG L +V +P+
Sbjct: 244 VPKETVTWGGMLADGQLYLGTS---WWVAVFPG--IALMLTSLAINITGDALRDVADPK 297
>pir||C82356 peptide ABC transporter, permease protein VC0173 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654576|gb|AAF93349.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 312
Score = 150 bits (375), Expect = 2e-35
Identities = 95/303 (31%), Positives = 152/303 (49%), Gaps = 27/303 (8%)
Query: 11 LKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTI 70
L++K F + ++ ++A+ PLI P + + + LPP +
Sbjct: 24 LRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAE--------LPPSWMEG- 74
Query: 71 YGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGG 130
N LGTD GRDI++ + YG R S IG A GL LG++IG AGY GG
Sbjct: 75 ------GNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGG 128
Query: 131 WIDEVLMMITNIMLVIPTMALLIIIAA---------YLPYRGVGIESVIIGLTAWPWTAR 181
ID LM +I L TM + II++A + V + VIIG+ WP AR
Sbjct: 129 RIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYAR 188
Query: 182 AVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLD 241
VRA L+ K +E++ A++ G +I+F I+PN +S + ++ +Q +I++ L
Sbjct: 189 TVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALS 248
Query: 242 FIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
F+GLG P SLG ++ ++ + + G WW PG+V+ +L+ + + L +VFN
Sbjct: 249 FLGLGLPVDQPSLGSLI--SIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFN 306
Query: 301 PRL 303
P++
Sbjct: 307 PKI 309
>pir||H72536 probable oligopeptide transport system permease protein APE1581 -
Aeropyrum pernix (strain K1) >gi|5105268|dbj|BAA80581.1|
(AP000062) 527aa long hypothetical oligopeptide
transport system permease protein [Aeropyrum pernix]
Length = 527
Score = 149 bits (373), Expect = 4e-35
Identities = 76/224 (33%), Positives = 120/224 (52%), Gaps = 5/224 (2%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNI 142
LGTD GRD++ L YG R + ++G+ + + G L G ++GY GG DEV++ I
Sbjct: 306 LGTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRFAQI 365
Query: 143 MLVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WPWTARAVRAQTLSLKNREFIHLAK 200
+ +P + LLI+ AA + G I +I + A WP A R+ +K+ ++ A
Sbjct: 366 IYSLPALPLLILFAAII---GGNIWVIIFLIVAFSWPGIAFVTRSMAFQIKSEPYVEAAI 422
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQA 260
SG G ++I+ + P ++ Y+F L G+++A L F+ LG ++ G +L +A
Sbjct: 423 ASGAGTVRIVLLYLAPQVLPYMFASMALSVPGAVIAEASLSFLNLGDPDLVTWGKILFEA 482
Query: 261 VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
A GYWWW IPPGL IA++ FI LD + NP+L+
Sbjct: 483 QDAGAALNGYWWWVIPPGLAIAVVGMTFVFIGNALDAILNPKLK 526
>pir||C72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980802|gb|AAD35390.1|AE001712_3 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 149 bits (372), Expect = 5e-35
Identities = 82/291 (28%), Positives = 148/291 (50%), Gaps = 26/291 (8%)
Query: 15 KFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPE 74
+FK ++ + L+++ + +P+D +Y L PP
Sbjct: 16 RFKYAVTVLTALVLLSILS-IFSPYDPYKWYVLPTNQ-----------PP---------- 53
Query: 75 GIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDE 134
++ H LGTD G+DI+ LT+ +++S ++ A + I+ + IG ++GY GG D
Sbjct: 54 ---SLEHILGTDGKGQDIFWLLTFSLKNSLILATIAAVFSRIIAITIGMLSGYLGGTTDR 110
Query: 135 VLMMITNIMLVIPTMALLIIIAAYLP-YRGVGIESVIIGLTAWPWTARAVRAQTLSLKNR 193
+LM +T+ +V+P LL+++++ + Y + I +IIG+ W AR +R+ LSL+ R
Sbjct: 111 ILMALTDTFMVMPVFPLLLLLSSLIKNYLSLPILGLIIGVFGWAGDARVIRSMILSLRER 170
Query: 194 EFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSL 253
EF+ +K SG+ +++F +P +I + FI G+I + L +G +L
Sbjct: 171 EFVVTSKFSGMRTFEVVFGDFVPYLIPVISGGFIGSMMGAIGFEIVLAILGFTRVEIPTL 230
Query: 254 GIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
G M + + A+ LGYWWW + P + L T LY ++ ++E +PR R
Sbjct: 231 GSMFHWMINFQAMLLGYWWWVLTPIVTAVFLFTALYTLSLSINEYLDPRTR 281
>gi|11499358 dipeptide ABC transporter, permease protein (dppC) [Archaeoglobus
fulgidus] >gi|7442417|pir||H69470 dipeptide ABC
transporter, permease protein (dppC) homolog -
Archaeoglobus fulgidus >gi|2648779|gb|AAB89481.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppC) [Archaeoglobus fulgidus]
Length = 286
Score = 148 bits (371), Expect = 6e-35
Identities = 90/289 (31%), Positives = 147/289 (50%), Gaps = 37/289 (12%)
Query: 19 GFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVN 78
G I+I +AL+A+F P I P+D + K G L P S++
Sbjct: 27 GLAIIITVALMAVFAPFIAPYDPI-------------KSGKDVLQPPSAE---------- 63
Query: 79 VTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMM 138
H +GTD+ GRD+++++ +G R + ++A ++T++G+ +G I+GY GG +D +L M
Sbjct: 64 --HIMGTDNLGRDVFSRIVFGSRVVLAVVLSASLVSTVIGVPLGLISGYFGGKLDRLLSM 121
Query: 139 ITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WPWTARAVRAQTLSLKNREFI 196
+ + M P + L I IAA L G + + ++ ++ P R +R QTLS+K+ F+
Sbjct: 122 LMDSMYAFPGLILAIAIAAVL---GPSVFNAVVAISVVYVPTYFRMIRGQTLSVKSLLFV 178
Query: 197 HLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGL---GPTRGMSL 253
AK +G D +I+ I PN+I + +VF L +IL GL F+G PT
Sbjct: 179 EAAKAAGASDWRIMRKYIFPNLIPTLVVVFSLSVADAILTEAGLSFLGFIVSAPTPDWGF 238
Query: 254 GIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+ + L GYWW PGL++ +L G + GL E++ PR
Sbjct: 239 ELASGRPYL----PAGYWWMITFPGLMVMLLSLGFALVGEGLSEIYAPR 283
>sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|11277274|pir||T44637 dipeptide transport protein
dppC [imported] - Bacillus firmus
>gi|1813497|gb|AAB41690.1| (U64514) dipeptide
transporter protein dppC [Bacillus firmus]
Length = 304
Score = 147 bits (368), Expect = 1e-34
Identities = 100/304 (32%), Positives = 151/304 (48%), Gaps = 33/304 (10%)
Query: 4 KSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALP 63
+ K KNK VG II+ LIA+F PL+T +++Y +
Sbjct: 30 REAFKQLKKNKLAIVGLIIITSFILIAIFAPLLT-------------SSSYAETNP---- 72
Query: 64 PMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGF 123
S+ + GP + H+ GTD FGRDI+ ++ YG R S +G A A I G +G
Sbjct: 73 ---SNRLQGP----SAEHWFGTDDFGRDIFTRIVYGARLSLQVGFFAVTGALIFGTTLGL 125
Query: 124 IAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WPWTAR 181
IAGY G WID ++ I +IML P++ L I I A L G +++ +I + P R
Sbjct: 126 IAGYYGRWIDMLISRIFDIMLAFPSILLAIAIVAIL---GPSLQNALIAIAIVNVPIFGR 182
Query: 182 AVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLD 241
VR++ +SL+ EFI AK G+ + +IIF I+PN ++ + + L FG +IL A L
Sbjct: 183 LVRSKVISLREEEFIMAAKAQGMKNGRIIFHHILPNSLAPIIVQATLGFGTAILEAAALG 242
Query: 242 FIGLGPTRGM-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
F+GLG M G ML + W + PG I +++ G I GL + +
Sbjct: 243 FLGLGAQAPMPEWGKMLSDS---RQFIQSAPWTVLFPGFSIMLVVLGFNMIGDGLRDALD 299
Query: 301 PRLR 304
P+++
Sbjct: 300 PKMK 303
>emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 322
Score = 147 bits (367), Expect = 2e-34
Identities = 71/216 (32%), Positives = 119/216 (54%), Gaps = 1/216 (0%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LGT+ G DI ++L YG + S +G A ++T++G ++G +GY G +DE+LM T
Sbjct: 94 HLLGTNDIGNDILSELVYGAKVSLTVGFAAALVSTLIGTILGLCSGYFRGAVDELLMGFT 153
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+I+L+IP + L+I++ AYL + I ++GL +W TAR R++TL L+ ++ A+
Sbjct: 154 DIVLIIPKIPLIIVLGAYLQ-PSIWILVPVLGLLSWESTARVTRSKTLQLRETGYVKSAR 212
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQA 260
G I+F I+PN+ + F+L ++++ L F+GL S G ML A
Sbjct: 213 CMGFSSQHIMFSDILPNLYHVLLPKFMLATASAMISEASLSFLGLSDVSMKSWGTMLSFA 272
Query: 261 VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLD 296
WWW +PPG+ I + + + I G++
Sbjct: 273 FSRGGFIRDMWWWYLPPGICITLCVISIALIGFGIE 308
>pir||A75118 dipeptide abc transporter, permease protein (dppc) PAB1873 -
Pyrococcus abyssi (strain Orsay)
>gi|5458169|emb|CAB49658.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppC) [Pyrococcus abyssi]
Length = 387
Score = 146 bits (366), Expect = 2e-34
Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 47/322 (14%)
Query: 18 VGFIIVIIMALIALFGPLITPFDNMGY---YPLKFGNTTYPKPGTPA-LPPMSSDTIYGP 73
+G IVII L+ +FGP + P+ + Y + N PG+ A L ++ TIY P
Sbjct: 58 IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
Query: 74 EGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWID 133
LG D +GRD+ + L G R+SF+I I LG+++G +AGY GG +D
Sbjct: 118 ---------LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVD 168
Query: 134 EVLMMITNIMLVIPTMALLIIIAAYLPYRGVG-------IESVIIGLTA----------- 175
E++M +T++ L P + L I +A LP R IE +++ + A
Sbjct: 169 ELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGR 228
Query: 176 ------------WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVF 223
WP AR R TL+ + + ++ A+ GL I+F I+PNII +
Sbjct: 229 LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPIL 288
Query: 224 MVFILQFGGSILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIA 282
+ L FGG +L GL F+GLG T ++ G ++ + WW PGLV+
Sbjct: 289 VYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP---RCWWLVFYPGLVVL 345
Query: 283 ILITGLYFINTGLDEVFNPRLR 304
+ G + GL ++ +P+ R
Sbjct: 346 LTALGWNLLGDGLRDILDPKTR 367
>pir||E71014 probable dipeptide transport system permease protein dppC -
Pyrococcus horikoshii >gi|3257834|dbj|BAA30517.1|
(AP000006) 385aa long hypothetical dipeptide transport
system permease protein dppC [Pyrococcus horikoshii]
Length = 385
Score = 145 bits (362), Expect = 7e-34
Identities = 92/321 (28%), Positives = 151/321 (46%), Gaps = 45/321 (14%)
Query: 18 VGFIIVIIMALIALFGPLITPFDNMGY---YPLKFGNTTYPKPGTPALPPMSSDTIYGPE 74
+G +VII + +FGP + P+ + Y + PG+ A+ ++T+
Sbjct: 58 IGLFLVIIFIFLGIFGPYLAPWKYNFFPTLYTSHYDQVYLVPPGSKAVLDFYNNTV---- 113
Query: 75 GIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDE 134
+T+ LG+D +GRD+ + + G R+SF+I I L LG+++G IAGY GG IDE
Sbjct: 114 ----ITYPLGSDHYGRDLLSLILQGARTSFVISIIVISLGVPLGIILGLIAGYYGGKIDE 169
Query: 135 VLMMITNIMLVIPTMALLIIIAAYLPYRGVG-------IESVIIGLTA------------ 175
++M T++ L P + L I +A LP R IE +++ + A
Sbjct: 170 LIMRTTDMFLAFPALILAIAFSAVLPDRLQAFISSHEIIEKIVLAIFALDQREAGNLGRL 229
Query: 176 -----------WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFM 224
WP AR R TL+ + + ++ A+ GL I+F I+PNII + +
Sbjct: 230 LAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAVGLPTRTILFKHILPNIIGPILV 289
Query: 225 VFILQFGGSILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIAI 283
L FGG +L GL F+GLG ++ G ++ + WW PGL++ +
Sbjct: 290 YITLDFGGVVLMEAGLSFLGLGAVPPIADWGRIVYDGAQYFP---RCWWLVFYPGLIVLL 346
Query: 284 LITGLYFINTGLDEVFNPRLR 304
G + GL ++ +PR R
Sbjct: 347 TALGWNLLGDGLRDILDPRTR 367
>gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 323
Score = 144 bits (359), Expect = 2e-33
Identities = 101/308 (32%), Positives = 149/308 (47%), Gaps = 39/308 (12%)
Query: 8 KIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLK--FGNTTYPKPGTPALPPM 65
K NK G +I+++ I + G TP YP+ FG + LPP
Sbjct: 12 KALFNNKFILAGIVIILVDFAIGIVGAFWTP------YPVSETFGIS---------LPPS 56
Query: 66 SSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIA 125
S+ H LGTD FG D+ + + +S ++GI+ G L I+ LIG
Sbjct: 57 SA-------------HILGTDEFGHDVLSVMMASTLTSLIVGISVGALIAIISTLIGLFG 103
Query: 126 GYKGGWIDEVLMMITNIM-LVIPTMALLIIIAAYLPYRGVGIES------VIIGL--TAW 176
GY GG I V++ I I L IP + LL+II AY I V+IGL T+W
Sbjct: 104 GYYGGKISGVIIDILTITALTIPGVILLVIIEAYFRAASSTINITLSYIIVVIGLAITSW 163
Query: 177 PWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILA 236
+ A+ +RAQ LS+ R++I ++L G +IIF+QI+P+I+ F+ IL+
Sbjct: 164 AFGAKQIRAQVLSISKRDYIIASRLIGEKSWRIIFNQILPSILPLTVAQFLFGVLYGILS 223
Query: 237 AVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLD 296
+ +F G+ PT +LG ML A WWW + + I +L GL +N G+D
Sbjct: 224 LITAEFWGVLPTNINNLGTMLFFISSNGAYLSNQWWWILGAIIPIMVLGAGLGILNIGID 283
Query: 297 EVFNPRLR 304
E +PRL+
Sbjct: 284 EFIDPRLK 291
>pir||T34756 oligopeptide transport integral membrane protein - Streptomyces
coelicolor >gi|3402243|emb|CAA20179.1| (AL031184)
oligopeptide transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 143 bits (356), Expect = 3e-33
Identities = 88/305 (28%), Positives = 154/305 (49%), Gaps = 31/305 (10%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTY-PKPGTPALPPMSSDTI 70
++K G I+V+++ ++A+F PLIT G P + P GTP
Sbjct: 45 RDKLALAGGIVVLVLIVVAVFAPLITSL--YGQDPNAYNEDMIDPLFGTPT--------- 93
Query: 71 YGPEGIVNVTHYLGTDSF-GRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKG 129
G G + H+LG + GRDI+A++ +G R S L+G + +A +LG ++G +AG+ G
Sbjct: 94 -GSLGGLGGEHWLGVEPVNGRDIFARIVHGARISLLVGFLSAMVAVVLGTVLGVLAGFFG 152
Query: 130 GWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIES---------VIIGLTAWPWTA 180
GW+D ++ I + +L P + +I + + +P +G+ V+IG WP+
Sbjct: 153 GWVDSLICRIMDGLLAFPQLLFIIALVSVMPDNMLGLSGTGVRLLMMIVVIGFFGWPYIG 212
Query: 181 RAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGL 240
R VR QTLS++ RE++ A+ G G I+F +++PN+++ + + + +IL L
Sbjct: 213 RVVRGQTLSMREREYVEAARSLGAGRFYILFKELLPNLVAPIIVYTTMMIPTNILTEAAL 272
Query: 241 DFIGLG---PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDE 297
F+G+G PT S G ML A+ + Y + PG+ I I + G+ +
Sbjct: 273 SFLGVGVKPPT--SSWGQMLSSAIDYYKSDPMY---MVVPGVAIFITVLAFNLFGDGVRD 327
Query: 298 VFNPR 302
+P+
Sbjct: 328 ALDPK 332
>pir||C72617 probable dipeptide transport system permease protein APE1396 -
Aeropyrum pernix (strain K1) >gi|5105079|dbj|BAA80393.1|
(AP000061) 387aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 387
Score = 143 bits (356), Expect = 3e-33
Identities = 98/338 (28%), Positives = 155/338 (44%), Gaps = 41/338 (12%)
Query: 3 LKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPF---DNMGYYPLKFGNTTYPKPGT 59
LK TL ++ +G +VI +IA+ GP I P D + Y F PGT
Sbjct: 45 LKLTLYALNRSPIGLLGVALVIAFVIIAVIGPYIAPLGYNDQLVYCVTDFDAVRLAPPGT 104
Query: 60 PALPPMSSDTIYGPEGIVNVTH--YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATIL 117
+ ++ D+I GI T+ +LG D +GRD+ +++ YG R+SF++ I + +
Sbjct: 105 --VVEVAEDSICTQLGIEPGTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWI 162
Query: 118 GLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYR--------------- 162
G+L+G +GY+GG +DEV+M + ++ L P + L I ++A LP R
Sbjct: 163 GILLGLFSGYRGGVVDEVIMRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTL 222
Query: 163 -------------GVGIESVIIGLTA--WPWTARAVRAQTLSLKNREFIHLAKLSGLGDM 207
V + V+I L WP AR VR LS + ++ A+ G+
Sbjct: 223 LRLFALKPEDALPMVRLVVVVIALWIVWWPVYARLVRGMVLSARENTYVEAARALGIPTH 282
Query: 208 KIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAV 266
I+ I+PNI+ V + L FG IL GL F+GLG ++ G ++ +
Sbjct: 283 SILLGHILPNILGPVLVYLTLDFGAVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYP- 341
Query: 267 TLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
WW PGL I + G + L ++ +PR R
Sbjct: 342 --NAWWLVFFPGLAILFTVLGFNLLGDALRDIMDPRTR 377
>dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 306
Score = 142 bits (354), Expect = 6e-33
Identities = 94/296 (31%), Positives = 147/296 (48%), Gaps = 33/296 (11%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
KNK G +IV IALF PL+T GY ++ +
Sbjct: 40 KNKLAMTGIVIVCFFLFIALFAPLLTTHSFDGYD--------------------AASRLQ 79
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
P + H+ GTD GRD++ ++ YG + S +G A A ++G L+G +AGY G W
Sbjct: 80 SP----SAEHWFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVLAGYYGRW 135
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIES--VIIGLTAWPWTARAVRAQTLS 189
+D ++ I +IML P++ L I I A L G + + V I + P R VR++ +S
Sbjct: 136 LDMLISRIFDIMLAFPSILLAIAIVAIL---GPSLHNAMVAIAIVNIPIFGRLVRSKVIS 192
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTR 249
L+ EFI A+ G+ + +I+F I+PN +S + + L FG +IL A L F+GLG
Sbjct: 193 LRAEEFIMAARAQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQA 252
Query: 250 GMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
++ G ML + A W AI PG+ I +++ G I GL + +P+++
Sbjct: 253 PLAEWGKMLADS---RAYIQTAPWVAIFPGMSIMLVVLGFNMIGDGLRDALDPKMK 305
>pir||D72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980545|gb|AAD35153.1|AE001692_10 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 362
Score = 142 bits (354), Expect = 6e-33
Identities = 83/234 (35%), Positives = 133/234 (56%), Gaps = 9/234 (3%)
Query: 75 GIVNVTHYL-GTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWID 133
G+ T +L GTD GRD+++++ YG R S IG+ L+ +LG++IG I+GY GG ID
Sbjct: 128 GVEEGTIFLFGTDRLGRDVFSRILYGARISTTIGLVGVFLSMVLGIIIGGISGYYGGKID 187
Query: 134 EVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIE-----SVIIGLTAWPWTARAVRAQTL 188
+ ++ IPT+ L + +AA LP I+ +VI+ L W AR VR++ L
Sbjct: 188 NFIQRTIEFLISIPTIPLWMALAAALPRYWSQIKVYFAITVILSLIGWTGLARVVRSKFL 247
Query: 189 SLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-P 247
SLK+ +F+ A+L+G + +IIF ++P++ S++ L G IL GL F+GLG
Sbjct: 248 SLKDEDFVVAARLAGASEWRIIFKHMLPSLTSHLIASATLSIPGMILGETGLSFLGLGLR 307
Query: 248 TRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
+S G++LQ+A N T+ + W + PGL + I + F+ GL + +P
Sbjct: 308 PPAISWGVLLQEA--QNIRTVALYPWLLIPGLFVIITVLCFNFVGDGLRDAADP 359
>pir||G72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982326|gb|AAD36813.1|AE001813_5 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 141 bits (352), Expect = 1e-32
Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 31/293 (10%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPG-TPALPPMSSDTI 70
KNK +G + V+I+ +A+ P I P YP Y +P A S D I
Sbjct: 22 KNKMAVIGGVFVLILIALAILAPYIAP------YP-------YDEPHYIRAFEGPSKDFI 68
Query: 71 YGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGG 130
+G TD+ GRD+++++ Y +R++ +IG + + I+G ++G +AG+KGG
Sbjct: 69 FG------------TDALGRDLFSRILYSLRNACIIGFGSQFVVLIIGGILGAVAGFKGG 116
Query: 131 WIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSL 190
WID+ +M I +IM PT +I+ L RG+ + IGLT W AR VR Q L L
Sbjct: 117 WIDKFIMSIVDIMFAFPTFLFNVILVTALG-RGLFTIFLAIGLTGWAGMARLVRGQVLYL 175
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRG 250
KN EF+ AK +G II I+PN+I + + G+++ GL IG+G
Sbjct: 176 KNSEFVEAAKAAGASTFYIIRKHILPNMIGPILVNLAFGVPGAMMTESGLAVIGMGVRPP 235
Query: 251 M-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
M S G ++ + + + + + I P + A + F+ GL + FNPR
Sbjct: 236 MPSWGNLIGEGI---GMMMAFPHLLIFPAVTFAFTLISFTFLADGLRDAFNPR 285
>pir||E72720 probable oligopeptide transport system permease protein oppC
APE0302 - Aeropyrum pernix (strain K1)
>gi|5103941|dbj|BAA79257.1| (AP000059) 308aa long
hypothetical oligopeptide transport system permease
protein oppC [Aeropyrum pernix]
Length = 308
Score = 140 bits (350), Expect = 2e-32
Identities = 95/295 (32%), Positives = 149/295 (50%), Gaps = 25/295 (8%)
Query: 13 NKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYG 72
N ++G II+ LIA+ PL+ P + Y + ++ P P + P +S G
Sbjct: 30 NPLSRMGLIIITGFILIAVAAPLLAPPNYPDPYKIPKVYSSEPLPPSSKHPFGTS----G 85
Query: 73 PEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWI 132
P G DIY + +G R S I + G+A +G+++G I+ Y GG I
Sbjct: 86 PPGYY-------------DIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISAYFGGII 132
Query: 133 DEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WPWTARAVRAQTLSL 190
D +LM IT + L +P + L + IA+ + ++++I+ L A WP AR VRA+ L +
Sbjct: 133 DNILMRITEVFLSLPGLILAMAIASMMER---SLQNMILALIAVWWPAYARIVRAEVLRV 189
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRG 250
KN ++ AK+ GL +II I+PN I V ++ + G +L A GL F+GLG G
Sbjct: 190 KNEPYVEAAKILGLNTYRIIARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPG 249
Query: 251 MS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ GIM+ + W + G WW PG+ I + + G + GL +V +PR R
Sbjct: 250 TAEWGIMISEGRNW--LLQGAWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTR 302
>sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|1073368|pir||S47764 dipeptide transport system
permease protein dppC - Escherichia coli
>gi|349227|gb|AAA23704.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466681|gb|AAB18520.1| (U00039)
dppC [Escherichia coli] >gi|1789964|gb|AAC76567.1|
(AE000431) dipeptide transport system permease protein 2
[Escherichia coli K12]
Length = 300
Score = 139 bits (346), Expect = 5e-32
Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 33/299 (11%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
+NK VG + V+I+ IA+F I P++ P + + +
Sbjct: 28 RNKGAVVGLVYVVIVLFIAIFANWIAPYN----------------PAEQFRDALLAPPAW 71
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
G ++ H LGTD GRD+ ++L YG R S L+G L+ I+G+++G IAGY GG
Sbjct: 72 QEGG--SMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGL 129
Query: 132 IDEVLMMITNIMLVIPTMAL-LIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSL 190
+D ++M + +IML +P++ L L+++A + P +G ++ + A P R RA L
Sbjct: 130 VDNIIMRVVDIMLALPSLLLALVLVAIFGP--SIGNAALALTFVALPHYVRLTRAAVLVE 187
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG---- 246
NR+++ ++++G G M+ +F I PN ++ + + L F +IL L F+G+G
Sbjct: 188 VNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPP 247
Query: 247 -PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
P G L +LQ A WW PGL I + + + GL + +P+L+
Sbjct: 248 TPEWGTMLSDVLQFA-------QSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
>pir||E72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981013|gb|AAD35587.1|AE001726_21 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 313
Score = 137 bits (341), Expect = 2e-31
Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 18/313 (5%)
Query: 4 KSTLKIALKNKKFKVGFIIVIIMALIALFGPLITP---------FDNMGYYPLKFGNTTY 54
K +K ++ +GF +V+ +IA+ P+I P + P+ N +
Sbjct: 6 KRIMKRFFRDPSAIIGFSLVLFFVVIAILAPVIAPPIHPLTRAKLPDPYLMPVVSWNQS- 64
Query: 55 PKPGTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLA 114
P+P T ++ + P V+ H G GRDI + +G R++F IG+
Sbjct: 65 PQPPTTKEDALAKNPNREPIRCVDY-HPFGVIG-GRDILYGIVWGTRTAFKIGLIVTLAR 122
Query: 115 TILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLT 174
++G+ IG I+GY GGWIDEVLM IT+I L IP + +++ L G G++ V+I +
Sbjct: 123 LLIGVFIGSISGYFGGWIDEVLMRITDIFLSIPFLIAAVVLTTVL---GTGLDKVMIAMI 179
Query: 175 AWPW--TARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGG 232
+ W AR +R L ++ +F+ AK G+ D II ++PN I V + + G
Sbjct: 180 VFGWMGAARLIRGNILQVREEQFVLAAKAIGVPDFLIILKHVLPNTIFPVLIWASMNMGS 239
Query: 233 SILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFI 291
++ A L F+GLG +G + G +L + W +W+ + PG + + + G +
Sbjct: 240 LVITAAVLSFLGLGAPQGYADWGSILSYSRDWMMEIGKHWYALVYPGTAMVLFVLGWNLL 299
Query: 292 NTGLDEVFNPRLR 304
L + F+PRL+
Sbjct: 300 GDALRDAFDPRLK 312
>sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075748|pir||D53290 oligopeptide transport protein
oppC - Lactococcus lactis subsp. lactis
>gi|149389|gb|AAA25166.1| (M76471) 'Sequence is part of
a 1.65-kb fragment of the lactose plasmid from
Lactococcus lactis subsp cremoris SK11 that facilitates
integration when plasmid is in L.lactis subsp. lactis.';
ORF >gi|308853|gb|AAA16166.1| (L18760) transmembrane
protein [Lactococcus lactis] >gi|495180|gb|AAB00536.1|
(U09553) transmembrane protein [Lactococcus lactis]
Length = 294
Score = 136 bits (339), Expect = 3e-31
Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 2/223 (0%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LGTD+ GRDI L R+SF I + ++G ++G I GY GG D + M T
Sbjct: 69 HLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVVGNILGVITGYFGGRFDLIFMRFT 128
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+ ++++P+M ++I+ +P II + +W T R +RA+T++ NR+++ +K
Sbjct: 129 DFVMILPSMMIIIVFVTIIPRFNSWSLIGIISIFSWIGTTRLIRARTMTEVNRDYVRASK 188
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQ 259
SG D KI+F +I PN+ + V L F G+I GL F+G G P SLG M+ +
Sbjct: 189 TSGTSDFKIMFREIWPNLSTLVIAEATLVFAGNIGLETGLSFLGFGLPAGTPSLGTMINE 248
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
A +T W W +P +VI I++ + FI L V + R
Sbjct: 249 ATNPETMTDKPWTW-VPATVVILIVVLAIIFIGNALRRVADQR 290
>pir||D64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313398|gb|AAD07369.1| (AE000548)
dipeptide ABC transporter, permease protein (dppC)
[Helicobacter pylori 26695]
Length = 285
Score = 136 bits (338), Expect = 4e-31
Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 29/295 (9%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
KNK VG IV+++ + A+F PL+ P D ++ KP I+
Sbjct: 13 KNKAAVVGAWIVLLLVICAIFAPLLAPHDPY----VQNAQDRLLKP------------IW 56
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
G N + LGTD GRDI ++L YG R S IGI + G+A G ++G IAGY GG
Sbjct: 57 EHGG--NAKYLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAVFFGTILGLIAGYFGGK 114
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTARAVRAQTLS 189
D ++M I +IM +P++ L++I+ A L G + + + IG P AR VR+ L
Sbjct: 115 TDAIIMRIMDIMFALPSILLIVIVVAVL---GPSLTNAMLAIGFVGIPGFARLVRSSVLG 171
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG--P 247
K +E++ +K++G ++++ I PN I + + + F ++L A L F+GLG P
Sbjct: 172 EKEKEYVIASKINGSSHLRLMCKVIFPNCIIPLIVQTTMGFASTVLEAAALSFLGLGAQP 231
Query: 248 TRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+ G ML ++ + A W + PG++I + + + G+ + +P+
Sbjct: 232 PK-PEWGAMLMNSMQYIATAP---WMLVFPGVMIFLTVMSFNLVGDGIMDALDPK 282
>sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|98273|pir||S16649 dipeptide ABC transporter
(permease) - Bacillus subtilis
>gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus
subtilis] >gi|2633648|emb|CAB13151.1| (Z99110) dipeptide
ABC transporter (permease) [Bacillus subtilis]
Length = 320
Score = 136 bits (338), Expect = 4e-31
Identities = 82/296 (27%), Positives = 144/296 (47%), Gaps = 32/296 (10%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
KNK G I++ + ++A+ GP ++P ++ + T P S+D
Sbjct: 53 KNKLAMAGLFILLFLFVMAVIGPFLSP------------HSVVRQSLTEQNLPPSAD--- 97
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
H+ GTD GRD++ + YG R S +G+ A + ++G++ G +AGYKGG
Sbjct: 98 ---------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGR 148
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWT--ARAVRAQTLS 189
ID ++M I ++ +P + ++I++ + G G+ ++I+ LT W AR VR Q L
Sbjct: 149 IDSIMMRIIEVLYGLPYLLVVILLMVLM---GPGLGTIIVALTVTGWVGMARIVRGQVLQ 205
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PT 248
+KN E++ +K G +II ++PN + + + L +I A L F+GLG
Sbjct: 206 IKNYEYVLASKTFGAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQA 265
Query: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
S G+M + + G+WW P I++ + + GL + +P+LR
Sbjct: 266 PFASWGVMANDGL--PTILSGHWWRLFFPAFFISLTMYAFNVLGDGLQDALDPKLR 319
>sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442409|pir||A69669 oligopeptide ABC transporter
(permease) oppC - Bacillus subtilis
>gi|40007|emb|CAA39789.1| (X56347) OppC [Bacillus
subtilis] >gi|2633499|emb|CAB13002.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 305
Score = 135 bits (337), Expect = 6e-31
Identities = 90/295 (30%), Positives = 147/295 (49%), Gaps = 33/295 (11%)
Query: 13 NKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYG 72
NK VG II++++ L+A+F P+ + +D Y N A P S D
Sbjct: 40 NKLAMVGLIIIVLIILMAIFAPMFSRYD---YSTTNLLN---------ADKPPSKD---- 83
Query: 73 PEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWI 132
H+ GTD GRDI+ + G R S IG+ A L ++G++ G I+G++GG
Sbjct: 84 --------HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRT 135
Query: 133 DEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPW--TARAVRAQTLSL 190
DE++M I +I+ +P++ ++I++ LP G+ ++II +T W AR VR Q L L
Sbjct: 136 DEIMMRIADILWAVPSLLMVILLMVVLP---KGLFTIIIAMTITGWINMARIVRGQVLQL 192
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTR 249
KN+E++ ++ G +++F I+PN + + + L +I L ++GLG P
Sbjct: 193 KNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAP 252
Query: 250 GMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
S G M + A+T W P G I I + G + GL + +P+LR
Sbjct: 253 LASWGTMASDGL--PALTYYPWRLFFPAGF-ICITMFGFNVVGDGLRDALDPKLR 304
>pir||C38447 sporulation initiation protein spo0KC - Bacillus subtilis
>gi|143606|gb|AAA62690.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 305
Score = 135 bits (337), Expect = 6e-31
Identities = 90/295 (30%), Positives = 147/295 (49%), Gaps = 33/295 (11%)
Query: 13 NKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYG 72
NK VG II++++ L+A+F P+ + +D Y N A P S D
Sbjct: 40 NKLAMVGLIIIVLIILMAIFAPMFSRYD---YSTTNLLN---------ADKPPSKD---- 83
Query: 73 PEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWI 132
H+ GTD GRDI+ + G R S IG+ A L ++G++ G I+G++GG
Sbjct: 84 --------HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRT 135
Query: 133 DEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPW--TARAVRAQTLSL 190
DE++M I +I+ +P++ ++I++ LP G+ ++II +T W AR VR Q L L
Sbjct: 136 DEIMMRIADILWAVPSLLMVILLMVVLP---KGLFTIIIAMTITGWINMARIVRGQVLQL 192
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTR 249
KN+E++ ++ G +++F I+PN + + + L +I L ++GLG P
Sbjct: 193 KNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAP 252
Query: 250 GMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
S G M + A+T W P G I I + G + GL + +P+LR
Sbjct: 253 LASWGTMASDGL--PALTYYPWRLFFPAGF-ICITMFGFNVVGDGLRDALDPKLR 304
>dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 302
Score = 134 bits (334), Expect = 1e-30
Identities = 71/225 (31%), Positives = 122/225 (53%), Gaps = 4/225 (1%)
Query: 82 YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITN 141
+LGTD GRD++ QL G R+S IG+ ++ +G+LIG I+GY GG ID + M +
Sbjct: 78 WLGTDYGGRDVFGQLIIGTRNSITIGLLVTLMSGTIGILIGLISGYYGGTIDNIFMRAVD 137
Query: 142 IMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKL 201
+++P + ++I+ A +P + S+I+ L W AR +R++ L + +++ +K
Sbjct: 138 FFMILPNLMIIIVFVALVPKYSIVSFSLIMTLFLWMGIARMIRSKALRERELDYVQASKT 197
Query: 202 SGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQA 260
G D+KI+F Q++PN+ S + + L +I GL F+G G P SLG ++ A
Sbjct: 198 LGSSDLKIMFTQVLPNLSSLIIVTMTLNLAANIGIESGLSFLGFGFPESTPSLGTLISYA 257
Query: 261 VLWNAVTLGYWWWA-IPPGLVIAILITGLYFINTGLDEVFNPRLR 304
N TL + WW +P ++I +L+ + + L + R R
Sbjct: 258 T--NPQTLEHRWWIWLPAAILIFVLMLSINNVGQALKRATDARQR 300
>pir||S75778 oligopeptide transport system permease protein appC - Synechocystis
sp. (strain PCC 6803) >gi|1001269|dbj|BAA10513.1|
(D64003) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 371
Score = 133 bits (332), Expect = 2e-30
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 21/237 (8%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNI 142
LGTD GRD +++L +G R S IG+ ++ LG+++G IAGY GGW+D VLM + +
Sbjct: 143 LGTDEQGRDQFSRLLFGGRISLFIGLIGITISFPLGMVVGGIAGYFGGWLDVVLMRLVEV 202
Query: 143 MLVIPTMALLIIIAAYLPYRGVGIES--------VIIGLTAWPWTARAVRAQTLSLKNRE 194
++ IP + LL+ +AA LP G+ S VI +W AR +R Q LSLK +E
Sbjct: 203 LMTIPGIYLLVALAAVLP---PGLSSAQRFLLIVVITSFISWSGLARVIRGQVLSLKQQE 259
Query: 195 FIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-----PTR 249
++ AK G G +II I+P SY+ + L G I+A L IGLG P+
Sbjct: 260 YVQAAKAMGAGAPRIIVRHILPQTASYIIISATLAVPGFIVAESVLSLIGLGIQQPDPSW 319
Query: 250 GMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRGE 306
G L I ++L + W PP ++I + + + GL + +PR GE
Sbjct: 320 GNLLSIATNASIL-----VLQPWLVWPPAVLIILTVLAFNLLGDGLRDALDPRSLGE 371
>sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|72439|pir||QREBOC oligopeptide transport system
permease protein oppC - Salmonella typhimurium
>gi|47804|emb|CAA29041.1| (X05491) Opp C (AA1-301)
[Salmonella typhimurium]
Length = 302
Score = 132 bits (330), Expect = 4e-30
Identities = 89/295 (30%), Positives = 144/295 (48%), Gaps = 27/295 (9%)
Query: 11 LKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTI 70
+ N+ I++ ++AL P+++ F Y+ +G + + P M+S
Sbjct: 34 MHNRAAVASLIVLFLIALFVTVAPMLSQFT---YFDTDWGMMS-------SAPDMASG-- 81
Query: 71 YGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGG 130
HY GTDS GRD+ ++ G R S ++GI A +A I+G L G ++GY GG
Sbjct: 82 ----------HYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGG 131
Query: 131 WIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSL 190
ID V+M + I+ P M +I++ + + + + V IG+ +W AR VR QTLSL
Sbjct: 132 KIDSVMMRLLEILNSFPFMFFVILLVTFFG-QNILLIFVAIGMVSWLDMARIVRGQTLSL 190
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRG 250
K +EFI A++ G+ I+ I+PN++ V + L IL L F+GLG
Sbjct: 191 KRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEP 250
Query: 251 M-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ S G +L N++ + W P G ++ L FI GL + +P+ R
Sbjct: 251 LSSWGALLSDGA--NSMEVSPWLLLFPAGFLVVTLFC-FNFIGDGLRDALDPKDR 302
>sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLID
>gi|7442415|pir||H64820 probable oligopeptide transport
protein b0832 - Escherichia coli
>gi|1787054|gb|AAC73919.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062409|dbj|BAA35527.1| (D90721) Transmembrane
protein dppC [Escherichia coli]
>gi|4062417|dbj|BAA35535.1| (D90722) Transmembrane
protein dppC [Escherichia coli]
Length = 303
Score = 132 bits (329), Expect = 5e-30
Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 36/290 (12%)
Query: 21 IIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVT 80
+ VI++ ++A+F I P+D Y+ N GP ++
Sbjct: 45 LFVILLIVVAIFARWIAPYDAENYFDYDNLNN-------------------GP----SLQ 81
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H+ G DS GRDI++++ G + S G+ A + +G L+G +AGY GW D ++M I
Sbjct: 82 HWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRIC 141
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAW--PWTARAVRAQTLSLKNREFIHL 198
+++ P + L I + A L G GI +VII + + P AR VR TL LK + FI
Sbjct: 142 DVLFAFPGILLAIAVVAVL---GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIES 198
Query: 199 AKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG---PTRGMSLGI 255
A+ G DM ++ I+P +S + + F ++ G SI++A L F+GLG PT G
Sbjct: 199 ARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPT--PEWGA 256
Query: 256 MLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRG 305
ML +A + A+ P L I + + + GL + +P+++G
Sbjct: 257 MLNEARADMVIAPHV---AVFPALAIFLTVLAFNLLGDGLRDALDPKIKG 303
>pir||E72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981701|gb|AAD36229.1|AE001772_8 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 301
Score = 132 bits (329), Expect = 5e-30
Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 18 VGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIV 77
VG II++ +A+F P++ P+D + G PP
Sbjct: 38 VGMIILLFYIFLAIFAPVLAPYDPT------------VRVGRSLQPPSEK---------- 75
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
H GTD+ GRDI++++ YG R + ++ A +A+ +G+ +G I+GY GG D VL
Sbjct: 76 ---HLFGTDNLGRDIFSRVIYGSRIALMVAFLAVVIASAIGIPLGLISGYVGGIFDRVLT 132
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WPWTARAVRAQTLSLKNREF 195
++ + + P + L I +AA L G G+ ++ + + P R VR Q S+KN +
Sbjct: 133 LVMDAVYSFPGLILAIAVAAVL---GPGMMNIAVSIAVVYAPTYFRVVRNQVTSVKNELY 189
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG---PTRGMS 252
+ A+ G D +I+ ++PN+ + +V + +I+ GL F+GLG PT
Sbjct: 190 VEAARALGAKDWEILVKYVLPNVFPSIVVVLSMNLADAIMTEAGLSFLGLGIAPPTPDWG 249
Query: 253 LGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
+ Q + + WW + PGL I + G + GL E+ NP +
Sbjct: 250 FDLSNGQRFILSRA----WWGVLFPGLAIITSVLGFSMFSEGLSEILNPNI 296
>dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 301
Score = 132 bits (329), Expect = 5e-30
Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 37/306 (12%)
Query: 2 SLKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPA 61
S K+ K KNK VG ++I ++AL GP T D Y P P
Sbjct: 25 SWKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHDP--YEPNVMNKLAEP------ 76
Query: 62 LPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLI 121
+ H+ GTD GRDI+ ++ +GM + +G + L I+G+++
Sbjct: 77 ----------------SAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVIL 120
Query: 122 GFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVII--GLTAWPWT 179
G ++GY G +D V+M I +++L P + L + I + L G I +VII G+ + P
Sbjct: 121 GVVSGYYGRLVDTVIMRIMDVLLAFPGILLALAIISIL---GGSINNVIIAVGIFSIPVF 177
Query: 180 ARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVG 239
AR VR TL+++ E+I K G D +IIF I+PN++S + + L SIL A
Sbjct: 178 ARIVRGSTLAVRKLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASA 237
Query: 240 LDFIGLGPTRGM-SLGIMLQQA--VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLD 296
L F+GLG + G ML +++A + A+ PGL I +++ GL
Sbjct: 238 LSFLGLGAQPPIPEWGAMLSDGRNYMYDAPHV-----ALFPGLAIVVVVLAFNIFGDGLR 292
Query: 297 EVFNPR 302
+ +P+
Sbjct: 293 DALDPK 298
>pir||A75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459332|gb|AAF11131.1|AE002000_7
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 376
Score = 132 bits (328), Expect = 7e-30
Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 6/230 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
+ LG+D+FGRD ++++ YG + S IGI A L+ +LGL++G IAGY G D ++M +
Sbjct: 146 YLLGSDNFGRDQFSRIMYGSQISLTIGIIASLLSLVLGLVLGGIAGYFRGLADTLIMRLV 205
Query: 141 NIMLVIPTMALLIIIAAYLPYRG--VGIESVIIGLTA---WPWTARAVRAQTLSLKNREF 195
++ IP + LLI++ A P + + ++ GL A W AR VR Q LS + ++
Sbjct: 206 EVLSAIPDLFLLILLRAMFPLEANPILVFYIVGGLLAFIGWGGIARVVRGQILSGREMDY 265
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRG-MSLG 254
+ A G D +II ++PN +++ + L G IL GL FIG+G S G
Sbjct: 266 VQAANALGASDARIIGQHLLPNSATFIIVAMSLAIPGYILTESGLSFIGIGIVEPYASWG 325
Query: 255 IMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+L+ A +L W + PG+ I + + G F+ GL + F+PR R
Sbjct: 326 SLLKLAQDGGFESLDTRPWVLLPGVFIMLAVLGWQFVGDGLRDAFDPRRR 375
>gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-3) [Sulfolobus
solfataricus]
Length = 298
Score = 131 bits (326), Expect = 1e-29
Identities = 78/226 (34%), Positives = 120/226 (52%), Gaps = 7/226 (3%)
Query: 80 THYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMI 139
T LGT++ G DI +++ Y + + I A I+G ++G +AGY GG +DE+LM +
Sbjct: 76 TFLLGTNAEGEDILSRILYALPRDAFVAIVVVFSAIIIGGILGILAGYLGGIVDEILMRV 135
Query: 140 TNIMLVIPTMALLIIIAAYLPYRGVGIESVI-IGLTAWPWTARAVRAQTLSLKNREFIHL 198
T+ L +P AL+++IA +P + +++ + + WP AR RAQTL +KN ++I
Sbjct: 136 TDAFLSLP--ALILVIAITVPLKATFFATILGLAVVWWPTYARFYRAQTLRIKNMDYISA 193
Query: 199 AKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIML 257
AKLS + + + + I N I V L FG IL L F+G+G T + LG M
Sbjct: 194 AKLSNVSRISLFYRYIFLNAIDPVLAYAALDFGNVILTYSTLAFLGIGITPPIPELGEMA 253
Query: 258 QQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
V YWWWA+ PGL I I++ G + L +V R+
Sbjct: 254 ANGV---TGLPQYWWWALFPGLTILIIVVGFVLLGDRLQDVVAGRI 296
>emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]
Length = 320
Score = 131 bits (325), Expect = 2e-29
Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 32/296 (10%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
KNK G I++ + ++A+ GP ++P ++ + T P S+D
Sbjct: 53 KNKLAMAGLFILLFLFVMAVIGPFLSP------------HSVVRQSLTEQNLPPSAD--- 97
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
H+ GTD GRD++ + YG R S +G+ A + ++G++ G +AGYKGG
Sbjct: 98 ---------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGR 148
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWT--ARAVRAQTLS 189
ID ++M I ++ +P + ++I++ + G G+ ++I+ LT W AR VR Q L
Sbjct: 149 IDSIMMRIIEVLYGLPYLLVVILLMVLM---GPGLGTIIVALTVTGWVGMARIVRGQVLQ 205
Query: 190 LKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PT 248
+KN E++ +K G +II ++ N + + + L +I A L F+GLG
Sbjct: 206 IKNYEYVLASKTFGAKTFRIIRKNLLRNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQA 265
Query: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
S G+M + + G+WW P I+ + + GL + +P+LR
Sbjct: 266 PFASWGVMANDGL--PTILSGHWWRLFFPAFFISSTMYAFNVLGDGLQDALDPKLR 319
>pir||JC5121 oligopeptide permease-like protein - Synechococcus sp
>gi|1332418|dbj|BAA12725.1| (D85103) OppC-like protein
[Synechococcus sp.]
Length = 351
Score = 131 bits (325), Expect = 2e-29
Identities = 78/233 (33%), Positives = 126/233 (53%), Gaps = 17/233 (7%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LGTD GRD +++L YG R S +G+ L LG+L+G IAGY GGW+D ++M +
Sbjct: 124 HLLGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALIMRLV 183
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIES-----VIIGLTA---WPWTARAVRAQTLSLKN 192
+++ IP++ LL+ +AA LP G+ S +I+ +T+ W AR +R Q LSL+
Sbjct: 184 EVLMTIPSLYLLVALAAVLP---PGLSSAERFLLIVAITSLINWAGLARVIRGQVLSLRE 240
Query: 193 REFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTR-GM 251
RE++ +++ G + ++ I+P ++YV + L I+A L +GLG +
Sbjct: 241 REYVQASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPSFIVAESVLSLVGLGIQQPDP 300
Query: 252 SLGIMLQQAVLWNAVTLGYW--WWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
S G ML A + + L W W PP L+I + + + GL + +PR
Sbjct: 301 SWGNMLSLATNASMLLLNPWLIW---PPALLIVVAVLAFNVVGDGLRDRLDPR 350
>sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442406|pir||H64871 oligopeptide transport system
permease protein oppC - Escherichia coli
>gi|1742034|dbj|BAA14777.1| (D90763) Oligopeptide
transport system permease protein OppC. [Escherichia
coli] >gi|1787498|gb|AAC74327.1| (AE000223) homolog of
Salmonella oligopeptide transport permease protein
[Escherichia coli K12] >gi|1805526|dbj|BAA16040.1|
(D90852) Oligopeptide transport system permease protein
OppC. [Escherichia coli]
Length = 302
Score = 130 bits (324), Expect = 2e-29
Identities = 85/295 (28%), Positives = 144/295 (48%), Gaps = 27/295 (9%)
Query: 11 LKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTI 70
+ N+ I+++++AL + P+++ F + +T + + P M S
Sbjct: 34 MHNRAAVASLIVLVLIALFVILAPMLSQF--------AYDDTDWAMMSSA--PDMESG-- 81
Query: 71 YGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGG 130
HY GTDS GRD+ ++ G R S ++G+ A +A ++G L G ++GY GG
Sbjct: 82 ----------HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGG 131
Query: 131 WIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSL 190
+D V+M + I+ P M +I++ + + + + V IG+ +W AR VR QTLSL
Sbjct: 132 KVDSVMMRLLEILNSFPFMFFVILLVTFFG-QNILLIFVAIGMVSWLDMARIVRGQTLSL 190
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRG 250
K +EFI A++ G+ I+ I+PN++ V + L IL L F+GLG
Sbjct: 191 KRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEP 250
Query: 251 M-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ S G +L N++ + W P G ++ L FI GL + +P+ R
Sbjct: 251 LSSWGALLSDGA--NSMEVSPWLLLFPAGFLVVTLFC-FNFIGDGLRDALDPKDR 302
>sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|972896|gb|AAA95973.1| (U17295) DppC [Haemophilus
influenzae] >gi|1574113|gb|AAC22839.1| (U32798)
dipeptide ABC transporter, permease protein (dppC)
[Haemophilus influenzae Rd]
Length = 295
Score = 130 bits (323), Expect = 3e-29
Identities = 87/296 (29%), Positives = 147/296 (49%), Gaps = 27/296 (9%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIY 71
+N+ +G I ++I+ALI++ P I PFD P + T LPP +
Sbjct: 23 QNRGALIGLIFILIVALISILAPYIAPFD-----PTEQNRTAL------LLPPAWYEG-- 69
Query: 72 GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGW 131
N + LGTD GRDI +++ YG R S G L+ G +G I+GY GG
Sbjct: 70 -----GNPAYLLGTDDIGRDILSRIIYGTRISVFAGFIIVLLSCAFGTSLGLISGYYGGV 124
Query: 132 IDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLK 191
+D +++ + +IML IP + L I++ + L + ++ I + + P R RA ++ K
Sbjct: 125 LDTIIIRLIDIMLAIPNLLLTIVVVSILE-PSLANATLAIAVVSIPSYVRLTRAAMMNEK 183
Query: 192 NREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG---PT 248
NR+++ +K++G G ++++F I+PN ++ + + + +IL L F+G+G PT
Sbjct: 184 NRDYVTSSKVAGAGILRLMFIVILPNCLAPLIVQMTMGISNAILELATLGFLGIGAKPPT 243
Query: 249 RGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
LG ML +A W PGLVI L+ + GL + +P+L+
Sbjct: 244 --PELGTMLSEA---RGFMQAANWLVTIPGLVILSLVLAFNLMGDGLRDALDPKLK 294
>pir||C72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981046|gb|AAD35618.1|AE001728_19 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 516
Score = 129 bits (322), Expect = 3e-29
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 14/234 (5%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
+ +G D +GRD+++++ + R S IG + L L+ G I+GY GG +DE +M +
Sbjct: 288 YIMGADQYGRDVWSRIVFASRISLSIGFIGMFITFALSLVFGGISGYYGGIVDEFMMRFS 347
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESV--------IIGLTAWPWTARAVRAQTLSLKN 192
I++ +P LLI++ + LP + I S I+ W AR +R LS+K
Sbjct: 348 EIIMSLPGFYLLILLRSLLP---LDIPSTQVYVLLVFILSFIGWAGRARVIRGMVLSIKQ 404
Query: 193 REFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTR-GM 251
REF+ A+ G D +I+F ++PN SY+ + L G IL L F+GLG
Sbjct: 405 REFVEAARALGFPDTRILFRHVLPNTASYLIVAATLAIPGYILGEASLSFLGLGIREPSA 464
Query: 252 SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRG 305
S G+ML QA N + + W + PG+ I I + F+ L + +PR G
Sbjct: 465 SWGLMLAQA--QNVTYMTKYPWLLIPGIFIFITVLSFNFVGDALRDALDPRSLG 516
>pir||D72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981606|gb|AAD36140.1|AE001766_6 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 367
Score = 127 bits (317), Expect = 1e-28
Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 8/225 (3%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNI 142
LGTDS GRD+ +++ YG R S IG+ L+ ILG+ IG I+GY GG +D + I
Sbjct: 141 LGTDSLGRDMLSRIIYGARISTSIGLIGVFLSFILGVAIGGISGYFGGAVDNFIQRTIEI 200
Query: 143 MLVIPTMALLIIIAAYL-----PYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIH 197
+ IPT+ L + ++A L P R + +I+ LT W AR VR++ LSL+ +F+
Sbjct: 201 IKSIPTIPLWLALSAALPQNWPPLRVYFVIVIILSLTGWTDLARVVRSRFLSLREEDFVM 260
Query: 198 LAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIM 256
AK G + +IIF ++P+ +S++ L G IL L F+GLG +S G++
Sbjct: 261 AAKFMGASEARIIFRHMLPSFMSHLIASITLSIPGMILGETSLSFLGLGLRPPVISWGVL 320
Query: 257 LQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
LQ+A V L Y W IP VI ++ F+ GL + +P
Sbjct: 321 LQEAQNLTVVAL-YPWLLIPVVFVITTVLC-FNFVGDGLRDAADP 363
>dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 293
Score = 127 bits (317), Expect = 1e-28
Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 39/303 (12%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFD-NMGYYPLKFGNTTYPKPGTPALPPM 65
LK +++K + +++I ++ LF P+ P N + L++ + ++
Sbjct: 4 LKNLMRDKVATLSLSVIVITIVVGLFAPVFAPHPPNEVHMELRYASPSWE---------- 53
Query: 66 SSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIA 125
+ LG D GR I ++L YG+R S L + A L ++GL++GFIA
Sbjct: 54 ---------------YLLGNDHLGRCILSRLIYGIRPSVLSVLVALFLTVLIGLVLGFIA 98
Query: 126 GYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIG--LTAWPWTARAV 183
GY G +D V+M I +IML P + + A++ GVG+E+++I L W W ARA+
Sbjct: 99 GYFRGKVDAVIMRICDIMLSFPGYVMPL---AFIGIFGVGLENILIAFILMKWAWFARAI 155
Query: 184 RAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFI 243
R + +++ AK SG+ D+KII+ I+P + V ++ IL G F+
Sbjct: 156 RTSVMQYSQVDYVKFAKASGIHDLKIIYKHIVPVTFADVAVISSGSISSMILQISGFSFL 215
Query: 244 GLG-PTRGMSLGIMLQQA--VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
GLG G+ML +A V+++ L + PGL I I++ F++ L +
Sbjct: 216 GLGIQAPHAEWGMMLNEARNVMFSRPEL-----MLAPGLAIIIVVAAFNFLSDALQVALD 270
Query: 301 PRL 303
P+L
Sbjct: 271 PKL 273
>pir||D82242 oligopeptide ABC transporter, permease protein VC1093 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655562|gb|AAF94252.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 300
Score = 127 bits (315), Expect = 2e-28
Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 33/297 (11%)
Query: 11 LKNKKFKVGFIIVIIMALIALFGPLITPF--DNMGYYPLKFGNTTYPKPGTPALPPMSSD 68
++NK V +++++ L +F P+ + + ++ +Y + G +
Sbjct: 34 MRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSA--------------- 78
Query: 69 TIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYK 128
H+ GTD+ GRD++ + G R S ++GI +A ++G L G +G+
Sbjct: 79 -----------EHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFI 127
Query: 129 GGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTL 188
GG D V+M I I+ IP M L+I++ + R + + V IG AW AR VR QTL
Sbjct: 128 GGRTDRVMMRILEILYAIPFMFLVIVLVTFFG-RNIVLIFVAIGAIAWLDMARIVRGQTL 186
Query: 189 SLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPT 248
SL+++EFI A + G+ II I+PN++ V + L IL L F+GLG
Sbjct: 187 SLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQ 246
Query: 249 RGM-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
M S G +LQ+ N + + W P ++ L ++ GL + +P+ R
Sbjct: 247 EPMTSWGALLQEGA--NTMEVAIWQLLFPAAFMVLTLFC-FNYVGDGLRDALDPKDR 300
>emb|CAC11409.1| (AL445063) probable dipeptide transport system permease protein
dppC [Thermoplasma acidophilum]
Length = 265
Score = 126 bits (313), Expect = 4e-28
Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%)
Query: 80 THYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMI 139
T+ LGT++ G DI +++ Y M I I +LG L G IAGY+GG++DEV+M I
Sbjct: 43 TYLLGTNANGEDILSRMLYAMPRDAYISIIVVLSGVLLGGLFGIIAGYRGGYLDEVIMRI 102
Query: 140 TNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLA 199
T+ L +P + +L+I + L + +G + + + WP AR RAQTL +KN +F+ A
Sbjct: 103 TDAFLSLPAL-ILVIALSVLFHETLGGVILALVIVWWPIYARFFRAQTLRIKNLDFVQAA 161
Query: 200 KLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIMLQ 258
KL + K+ F + N I V L FG IL L F+G+G + LG M
Sbjct: 162 KLGNVSFAKLFFSYLFINSIDPVVAYAALDFGNVILTYSTLAFLGIGLEPPIPELGSMAS 221
Query: 259 QAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
V + G WW+A+ PGL I I++ G + + ++ + R+
Sbjct: 222 NGV--GTLPTG-WWYAVFPGLAILIIVIGFVLVGDRMQDIVSNRI 263
>gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]
Length = 308
Score = 125 bits (312), Expect = 5e-28
Identities = 87/301 (28%), Positives = 146/301 (47%), Gaps = 36/301 (11%)
Query: 9 IALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSD 68
IA K +K + ++I+ LI LF P Y +S+
Sbjct: 33 IARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSY-------------------AVSTS 73
Query: 69 TIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYK 128
+ P + H GTD G D+ A + G + S I T LAT++G + G +AGY
Sbjct: 74 DLSAPP---SWEHPFGTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYV 130
Query: 129 GGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIE------SVIIGLTAWPWTARA 182
GGW D +LM I +++++ P L+ +AA+L + G E ++++ +W AR
Sbjct: 131 GGWADSLLMRIVDLIMIFP----LLAVAAFLARQSQGGEHGWLLVALVLATLSWTVLARV 186
Query: 183 VRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDF 242
VR+ LSL+ REF+ AK++G G ++IIF ++PN + + + + +IL+ L +
Sbjct: 187 VRSVVLSLRTREFVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSY 246
Query: 243 IGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
+G G SLG+++ QA A++ W + PGL I ++ + FI GL +P
Sbjct: 247 LGFGVQPPDTSLGLLINQA--QGAISTRPWLFYF-PGLFIILIALCVAFIGDGLRAALDP 303
Query: 302 R 302
+
Sbjct: 304 K 304
>gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC-1) [Sulfolobus
solfataricus]
Length = 450
Score = 125 bits (311), Expect = 7e-28
Identities = 60/216 (27%), Positives = 113/216 (51%), Gaps = 1/216 (0%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNI 142
+GTD FGR + + G+ ++ IG+ +A ++G+ +G I+GY GG D ++ +T +
Sbjct: 231 MGTDYFGRPLDLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTLV 290
Query: 143 MLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLS 202
L +P + L+ ++ ++ + IE+++I +WP+ A R+ LS+K+ ++ KL
Sbjct: 291 FLALPALPFLVAVS-FVAEPNIVIEALLIAFLSWPFYAIIARSMALSIKSNSYVEADKLL 349
Query: 203 GLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQAVL 262
G+ ++ F MP +I +L IL A L F+G+ P ++ G +L A
Sbjct: 350 GIPSYRVFFTHFMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTWGGILDAAET 409
Query: 263 WNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEV 298
+ A G+WWW + PG ++ I+ I ++ V
Sbjct: 410 YQAQVNGWWWWVVFPGAMVVIVAIPFVLIGFAIERV 445
>sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1282C
>gi|7442464|pir||D70729 probable peptide transport
system permease - Mycobacterium tuberculosis (strain
H37RV) >gi|3261616|emb|CAB01002.1| (Z77164) oppC
[Mycobacterium tuberculosis]
Length = 291
Score = 125 bits (310), Expect = 9e-28
Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 15/253 (5%)
Query: 60 PALPPMSSD-----TIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLA 114
P L P S D + P G H+LGT++ G+D+ AQ GM+ S LIG+ ++
Sbjct: 39 PPLLPYSYDDLDFNALLQPPG---TKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVIS 95
Query: 115 TILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLT 174
T + +G I+GY GGW D LM + +++LV+P+ L+ I+ I +++ L
Sbjct: 96 TGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILIAIVTPRTK-NSANIMFLVLLLA 154
Query: 175 AWPW--TARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGG 232
+ W ++R VR T+SL+ REFI A+ G+ +II ++PN+ S + + L
Sbjct: 155 GFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNVAA 214
Query: 233 SILAAVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFI 291
+ILA GL F+G G +SLG ++ A + W + P ++ +++
Sbjct: 215 AILAETGLSFLGFGIQPPDVSLGTLIADG---TASATAFPWVFLFPASILVLILVCANLT 271
Query: 292 NTGLDEVFNPRLR 304
GL + +P R
Sbjct: 272 GDGLRDALDPASR 284
>gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; DppC1 [Halobacterium
sp. NRC-1]
Length = 315
Score = 124 bits (309), Expect = 1e-27
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 7/224 (3%)
Query: 84 GTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIM 143
GTD+ GRDI+ + YG + G +T LG+ +G IA Y D V+M +++
Sbjct: 92 GTDAAGRDIFKRTLYGAWIAIKYGTVTVAASTFLGVALGIIAAYYSDLTDNVIMRTMDVL 151
Query: 144 LVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WPWTARAVRAQTLSLKNREFIHLAKL 201
L P++ L + + A G G+ V+I LT P AR VR L + E+I +
Sbjct: 152 LAFPSLLLALALVAIF---GAGLWKVVIALTLVYTPRFARVVRGAALKVLEDEYIEATEA 208
Query: 202 SGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIMLQQA 260
G D +++ + PN ++ V + L +G +I+ L F+G G GM S G+ML
Sbjct: 209 LGATDARVLARHVFPNTLAPVTVQSTLNYGLAIIDFAALSFLGFGAAPGMPSWGLMLSNG 268
Query: 261 VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
V N + G WW ++ PGL +AIL+ G + G+ + +PR+R
Sbjct: 269 VT-NGLLTGKWWMSLFPGLFLAILVLGFNLLGDGMRDALDPRMR 311
>gi|10954709 hypothetical ABC-transporter gene~similar to dppC gene
[Agrobacterium rhizogenes] >gi|8918709|dbj|BAA97774.1|
(AB039932) hypothetical ABC-transporter gene~similar to
dppC gene [Agrobacterium rhizogenes]
>gi|10567373|dbj|BAB16182.1| (AP002086) hypothetical
ABC-transporter gene~similar to dppC gene [Agrobacterium
rhizogenes]
Length = 305
Score = 124 bits (308), Expect = 1e-27
Identities = 90/303 (29%), Positives = 146/303 (47%), Gaps = 27/303 (8%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
L+IA+ F++G I ++ +A+ P I+ D PLK + +PP
Sbjct: 26 LQIAVGRLDFRIGLIGFGLLLGLAILLPFISSVD-----PLKMAYSH------KFIPPFP 74
Query: 67 SDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAG 126
S+ P + LGTD GRD+ + G+ S IG+T L I+G +G +AG
Sbjct: 75 SEGWQWP-------YVLGTDQLGRDVLMRCLVGLCYSLFIGVTTVILMFIVGCSLGLLAG 127
Query: 127 YKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQ 186
++GGW+D V+M +T+ L IP + L I I + V +++GL+ WP AR R+
Sbjct: 128 FRGGWLDTVIMRLTDAQLSIPMIILAITILG-VSRPTVPAIILVLGLSGWPLYARVARSV 186
Query: 187 TLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG 246
L +NR ++ ++ G D++I+ + P ++ + V +L ++ L F+GLG
Sbjct: 187 ALGERNRGYVLGERVLGASDLRIMLLFVAPVVLPPIAFVAVLDIARMMIFESILGFLGLG 246
Query: 247 ---PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
PT I + L NA WW A PGL + I +T L + + L+ N L
Sbjct: 247 VQPPTPTFGNVIADSRKYLLNA-----WWIATMPGLFMLISLTCLNLMGSALERARNAVL 301
Query: 304 RGE 306
RG+
Sbjct: 302 RGD 304
>pir||T35940 probable transport permease protein - Streptomyces coelicolor
>gi|4158199|emb|CAA22762.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 312
Score = 123 bits (307), Expect = 2e-27
Identities = 75/228 (32%), Positives = 116/228 (49%), Gaps = 6/228 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H GTD GRD+ + YG+R S L+G+ A AT++G +G AG GGW+D +M +
Sbjct: 86 HPFGTDDVGRDLLLRCVYGLRVSLLVGMAAALTATVVGTAVGATAGALGGWVDRGVMRVV 145
Query: 141 NIMLVIPTMAL-LIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLA 199
+ + +P + L + I+A + P GV + LT W TAR VRA+ LSL+ R I A
Sbjct: 146 DALSSVPHLLLGIFIVAMFRP--GVWPVVASVALTHWLSTARIVRAEVLSLRARPHIDAA 203
Query: 200 KLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQ 258
G ++ ++P ++ + +L ++ L F+GLG PT SLG ++Q
Sbjct: 204 VSGGASRWRVTVRHLLPGVLPQAALAAVLMVPHAMWHESALSFLGLGLPTHTASLGNLIQ 263
Query: 259 QAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRGE 306
+A ++ G WW + PGL I + + + E NPR R E
Sbjct: 264 EA--RGSLLAGQWWPTLFPGLFIIVPTLAVAGLAGAWRERINPRRRSE 309
>dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [Ochrobactrum
anthropi]
Length = 291
Score = 123 bits (307), Expect = 2e-27
Identities = 86/300 (28%), Positives = 142/300 (46%), Gaps = 35/300 (11%)
Query: 1 MSLKSTLKIALKN--KKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPG 58
+SL S L+ +++ K+G I+ ++ L+A+F P I P+D Y
Sbjct: 10 LSLFSMLRNEVRSWSPPLKIGSAIMALLGLVAIFAPFIAPYD-----------PNYQDFE 58
Query: 59 TPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILG 118
+PP ++ H GTD+ GRD+++++ +G R ++G + I G
Sbjct: 59 AILVPP-------------SLKHLFGTDNLGRDVFSRVVFGARIDLVVGFLLTYVPMIYG 105
Query: 119 LLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIG--LTAW 176
+LIG AGY GG D LM I ++ + P + L+++I A L G GI+++ I + AW
Sbjct: 106 VLIGAYAGYIGGRFDATLMRIIDVAMAFPFLVLIVVILAIL---GPGIQNIYIAIFIVAW 162
Query: 177 PWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILA 236
AR RA+ + + ++++ AK+ G +IIF +PN+I+ + F +I+
Sbjct: 163 TMYARLARAEMMVERTKDYMVAAKVLGFPRSRIIFLHGLPNVINSSIVFSTSDFVLNIVL 222
Query: 237 AVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGL 295
GL FIGLG G M+ + WW A+ PG I + L I GL
Sbjct: 223 VSGLSFIGLGIQPPAPEWGSMIAEG---RDFMRQAWWIAVLPGFAIVLTGMALVLIGDGL 279
>pir||D82442 probable peptide ABC transporter, permease protein VCA0589
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658000|gb|AAF96491.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 352
Score = 123 bits (306), Expect = 3e-27
Identities = 91/324 (28%), Positives = 152/324 (46%), Gaps = 46/324 (14%)
Query: 16 FKVGFIIVIIMALIALFGPLITPFDNMGYYPL-------KFGN-----TTYPKPGTPALP 63
F + F++ + LIA PL+ +D Y P+ +FG Y P +L
Sbjct: 36 FLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYSETQFGGEFDTEADYTDPYVVSLI 95
Query: 64 PMSSDTIY--------------------GPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSS 103
I+ P+ + ++LGTD GRD+ A++ YG R S
Sbjct: 96 EEKGQIIWPLIRFHYDTINFDITGSVPSAPDSV----NWLGTDDKGRDVLARIIYGFRIS 151
Query: 104 FLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRG 163
L G +++++G+LIG GY GGW+D + +PT+ LLII+++++
Sbjct: 152 VLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNF 211
Query: 164 VGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPN--IISY 221
+ +++ L +W VRA+ L +N +++ A+ G+ DM+II ++PN + S
Sbjct: 212 WWLLGIMV-LFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASL 270
Query: 222 VFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLV 280
M FIL GS+ LDF+G G P SLG +L Q L W I +V
Sbjct: 271 TMMPFIL--SGSVTTLTSLDFLGFGLPAGSPSLGELLAQ----GKANLQAPWLGISAFVV 324
Query: 281 IAILITGLYFINTGLDEVFNPRLR 304
+++++T L FI + + F+P L+
Sbjct: 325 LSVMLTLLVFIGEAVRDAFDPHLQ 348
>gb|AAC69839.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 289
Score = 123 bits (305), Expect = 3e-27
Identities = 84/302 (27%), Positives = 140/302 (45%), Gaps = 37/302 (12%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
LK L++K + I+++ + L PL+T +D P
Sbjct: 4 LKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYD-----------------------PNH 40
Query: 67 SDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAG 126
DT G+ + H LGTD GRDI +L Y +R S L A ++ ++G ++GF++G
Sbjct: 41 IDTANKFAGM-SFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSG 99
Query: 127 YKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIG--LTAWPWTARAVR 184
Y G++D ++M ++ML P+ + + + A G+G E++I+ LT W W R +R
Sbjct: 100 YFQGFVDALIMRACDVMLAFPSYVVTLALIALF---GMGAENIIMAFILTRWAWFCRVIR 156
Query: 185 AQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIG 244
+ + + AK G+ DMKII IMP ++ + ++ IL G F+G
Sbjct: 157 TSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLG 216
Query: 245 LG---PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
LG PT G+ML +A V + PG+ I I++ F++ L +P
Sbjct: 217 LGVKAPT--AEWGMMLNEA---RKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDP 271
Query: 302 RL 303
R+
Sbjct: 272 RI 273
>gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T45538 moaC
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665714|gb|AAB88474.1| (AF242881) moaC
[Agrobacterium tumefaciens]
Length = 293
Score = 122 bits (304), Expect = 4e-27
Identities = 88/295 (29%), Positives = 142/295 (47%), Gaps = 33/295 (11%)
Query: 13 NKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYG 72
N +G II+ ++ + A+ P + +YP N L P S+D
Sbjct: 26 NPSMWIGVIIIAVLLVAAVLAP------QLSFYPPAKQNLF------DQLSPPSAD---- 69
Query: 73 PEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWI 132
+ LG D +GRDI +L YG R S LIG A +A ++G LIG +AG++GG I
Sbjct: 70 --------YLLGADQYGRDILTRLLYGARYSLLIGSLAVVIAMVIGTLIGMMAGFRGGKI 121
Query: 133 DEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTARAVRAQTLSL 190
D VLM I +++L P++ L I + A + G + ++I I T+ P AR RA L+
Sbjct: 122 DIVLMQIMDVILAFPSLILGIALVALM---GATMTNIIAAIAFTSVPAFARVARAAVLTQ 178
Query: 191 KNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTR 249
++RE++ G + +F I+P I+ V ++ L ++ L F+GLG
Sbjct: 179 RDREYVQACSAMGFSGSRTLFRHILPAILPEVMVLASLWMANAVRTEASLAFVGLGIAPP 238
Query: 250 GMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ G M++ V L + AI P L I +L+ I GL ++ +PR++
Sbjct: 239 APTWGGMVRDGF---TVILSSPYLAIFPSLAILLLVLAFNLIGDGLRDLIDPRMK 290
>pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001402|dbj|BAA10024.1| (D63999) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 294
Score = 122 bits (303), Expect = 6e-27
Identities = 95/310 (30%), Positives = 149/310 (47%), Gaps = 51/310 (16%)
Query: 6 TLKIALKNKKFK-----VGFIIVIIMALIALFGPLI--TPFDNMGYYPLKFGNTTYPKPG 58
++ I L+ K F+ + I +II+ L +FGP+ P D + +
Sbjct: 11 SVAINLQRKIFQKPLASLSLITLIIIVLSVVFGPIFYRVPIDQIDF-------------S 57
Query: 59 TPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILG 118
A+PP + H LGT+ G+D A+L G R S +G++A ++ LG
Sbjct: 58 QTAVPP-------------SWQHPLGTNDLGQDQLARLLIGGRISLAVGLSAMAVSLTLG 104
Query: 119 LLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIA---------AYLPYRGVGIESV 169
LIG IAGY GGW D +LM IT++ L +P + L++++ A P +G+ I V
Sbjct: 105 TLIGAIAGYFGGWWDVILMRITDLFLALPQLPLVLLVVYLFREPVTRATSPEKGIFILVV 164
Query: 170 -IIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFIL 228
+IGL W AR VR L L+ EF+ A G G II+ ++PN+++ + + L
Sbjct: 165 LLIGLLNWMSVARLVRGNILRLREMEFVKAAIAMGAGSNHIIWRHLLPNVLNLIIVAASL 224
Query: 229 QFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQA--VLWNAVTLGYWWWAIPPGLVIAILI 285
G +I+ L F+GLG P + G ML A L A + A+ PGL I I +
Sbjct: 225 AVGNAIITESTLSFLGLGFPPDVPTWGQMLYTAKDYLETAPLM-----AVFPGLAIFITV 279
Query: 286 TGLYFINTGL 295
+ ++ G+
Sbjct: 280 LSVNYLGDGI 289
>pir||E75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458682|gb|AAF10533.1|AE001948_2
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 332
Score = 122 bits (302), Expect = 7e-27
Identities = 86/307 (28%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 17 KVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPE-G 75
KVG IIV + L+AL P++ P+D + P T + +T P G
Sbjct: 28 KVGAIIVALFVLLALLAPVLRPYDPTT--DRNYRLNLKPPSITALWDAGAKETYTDPATG 85
Query: 76 IVNV-THYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDE 134
VN+ GTD+ GRDIYA++ +G R S +G+ + LA ++G L+G +AG+ GGW D
Sbjct: 86 KVNLWAAPFGTDNLGRDIYARVLHGTRISLKVGVVSTLLALVIGTLLGVMAGFFGGWFDS 145
Query: 135 VLMMITNIMLVIPTMALLIIIAA-----YLPYRGVGIESVI-------------IGLTAW 176
V+ +T+++L P++ L I A + P G++ + + L
Sbjct: 146 VMGYLTDVLLAFPSILLAIGFATIFSSDHPPLLIKGLDRLFALNSPQLVTAMLAVSLVQI 205
Query: 177 PWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILA 236
P R R+ LS++ REF+ A G +++F ++PN +S + + L + +
Sbjct: 206 PVYMRLARSVVLSIREREFVQAAGALGASQWRMVFKHVLPNSLSPLIVQGALSIATATIE 265
Query: 237 AVGLDFIGLGPTRGM-SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGL 295
L F+G+G + G M+ + + W I PGL I + + G + GL
Sbjct: 266 VAALGFLGIGAQPPLPEWGTMISDS---RQYYVDAPWTMIFPGLAIFLTVLGFNLLGDGL 322
Query: 296 DEVFNPR 302
+V +PR
Sbjct: 323 RDVLDPR 329
>pir||T44599 oligopeptide transport system permease protein [imported] -
Rhizobium meliloti megaplasmid 2 (fragment)
>gi|4929437|gb|AAD33993.1|AF148072_1 (AF148072)
oligopeptide transport system permease protein
[Sinorhizobium meliloti]
Length = 289
Score = 121 bits (300), Expect = 1e-26
Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 14/228 (6%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNI 142
LGTD GRD+ +++ YG R S IG+ ++ +LG++IG +AGY GG D V+ + +
Sbjct: 65 LGTDRLGRDVLSRIIYGARISLTIGLLGITVSFVLGIVIGGLAGYHGGIFDLVVQRLIEV 124
Query: 143 MLVIPTMALLIIIAAYLP--------YRGVGIESVIIGLTAWPWTARAVRAQTLSLKNRE 194
+ IP++ L + +AA +P Y G+ +VI+GL W ARAVR++ L+L+ +
Sbjct: 125 LQSIPSIPLWLSLAAIMPATWSPLLIYLGI---TVILGLLDWTGLARAVRSKLLALREED 181
Query: 195 FIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SL 253
++ A+L G +II ++P +S++ + G IL L F+GLG + S
Sbjct: 182 YVLAAQLMGARSGRIIGRHLVPGFMSHLIATATISIPGMILGETALSFLGLGLRPPITSW 241
Query: 254 GIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
GI+L +A + + ++ W + P + + ++I F+ GL + +P
Sbjct: 242 GILLTEAK--SVSVIAFYPWLLFPTIPVILVILAFNFLGDGLRDAADP 287
>pir||D83082 probable permease of ABC transporter PA4504 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950744|gb|AAG07892.1|AE004864_4 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 303
Score = 120 bits (299), Expect = 2e-26
Identities = 82/310 (26%), Positives = 149/310 (47%), Gaps = 37/310 (11%)
Query: 3 LKSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPAL 62
LK + +NK G + ++++ ALF P + P+D +
Sbjct: 20 LKEFWQAFTRNKGAVGGLLFMLLIVFCALFAPWVAPYDPSEQF----------------- 62
Query: 63 PPMSSDTIYGPEGIVN---VTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGL 119
D + P + LGTD GRD+ ++L +G R S LIG+++ ++ + G+
Sbjct: 63 ----RDFLLTPPSWLEGGQARFLLGTDELGRDLLSRLIHGARLSLLIGLSSVVISLVPGI 118
Query: 120 LIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWP 177
L+G +AG+ ++M + +IML +P++ L + I A L G G+ + + I + + P
Sbjct: 119 LLGLLAGFSPNRAGPLIMRLMDIMLALPSLLLAVAIVAIL---GPGLINTVIAIAIVSLP 175
Query: 178 WTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAA 237
R RA ++ NR+++ ++L+G G ++++F ++PN ++ + + L F +IL A
Sbjct: 176 AYVRLTRAAVMTELNRDYVTASRLAGAGTLRLMFVCVLPNCMAPLIVQATLSFSSAILDA 235
Query: 238 VGLDFIGLG---PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTG 294
L F+GLG PT G ML A WW PGL I + + + + G
Sbjct: 236 AALGFLGLGVQPPT--PEWGTMLASA---RDYIERAWWVVSLPGLTILLSVLAINLMGDG 290
Query: 295 LDEVFNPRLR 304
L + +P+L+
Sbjct: 291 LRDALDPKLK 300
>pir||D70141 oligopeptide ABC transporter, permease protein (oppC-1) homolog -
Lyme disease spirochete >gi|2688244|gb|AAC66723.1|
(AE001140) oligopeptide ABC transporter, permease
protein (oppC-1) [Borrelia burgdorferi]
Length = 349
Score = 120 bits (299), Expect = 2e-26
Identities = 69/223 (30%), Positives = 119/223 (52%), Gaps = 5/223 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
+ LGTD+ GRD+ A+L G + S +G L+ I+G ++G IAG+ GG D+++
Sbjct: 128 YLLGTDNLGRDLLARLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLPDKIITKTI 187
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
I+ +P + ++II+ A + +G+ + + +W AR VR Q SL + EFI AK
Sbjct: 188 EILYALPYLLIVIILMAIMERSIIGL-FIALAFVSWLTVARVVRGQVQSLSSSEFIQAAK 246
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIMLQQ 259
G + +II ++PN I + + ++ I+A L F+GLG + M S G ++Q
Sbjct: 247 TLGATNQRIILKHLIPNSIGMIVIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQN 306
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+ A + Y W P +V+ I + + F+ GL + F+P+
Sbjct: 307 GI---ATFVEYPWKVFIPAIVMTIFLLFMNFLGDGLRDAFDPK 346
>gb|AAC67219.1| (U78968) transmembrane transport protein DppC [Streptococcus
pyogenes]
Length = 274
Score = 120 bits (298), Expect = 2e-26
Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 8/228 (3%)
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
++ H+ GTD GRD++ + G+ S +G+ + + G +AG ID+++
Sbjct: 48 SLNHFFGTDGLGRDMFVRTIKGLYFSLQVGLLGALMGVFFATVFGVLAGLGNSLIDKIIA 107
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIG--LTAWPWTARAVRAQTLSLKNREF 195
+ ++ + +P + +I+I + G G + VII +T WP+ AR +R + LKN+ F
Sbjct: 108 WLVDLFIGMPHLIFMILIFFVV---GKGAQGVIIATAVTHWPFLARVIRNEVYDLKNKAF 164
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLG 254
+ L+K G I+ I+P I S +F+ FIL F IL + F+G G S+G
Sbjct: 165 VQLSKSMGKTPYYIVRHHILPLIASQIFIGFILLFPHVILHEASMTFLGFGLSAEQPSVG 224
Query: 255 IMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
I+L +A ++LG WW + PGL + +++ I L ++F P+
Sbjct: 225 IILSEAA--KHISLGNWWLVVFPGLYLILVVNAFDTIGESLKKLFYPQ 270
>pir||C75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460716|gb|AAF12421.1|AE001863_46
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 369
Score = 119 bits (296), Expect = 4e-26
Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 10/228 (4%)
Query: 84 GTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIM 143
GTD GRD++++ G + S +G+ ++ LG+L+G ++GY GGW+D ++ + ++
Sbjct: 145 GTDQLGRDLFSRTLVGAQVSMTVGVVGVLISFALGILLGGVSGYFGGWVDTLIQRVVEVL 204
Query: 144 LVIPTMALLIIIAAYLPYRG------VGIESVIIGLTAWPWTARAVRAQTLSLKNREFIH 197
L P + +L+ +A +P R GI +V + L W AR VR Q L+ +N +++
Sbjct: 205 LSFPRLPILLALATLIPARWPSTWVYTGIVAV-LALIGWASLARVVRGQVLAARNLDYVS 263
Query: 198 LAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIM 256
A+ G ++++I I PN+ S++ + L G IL L F+GLG M S G++
Sbjct: 264 AAQAMGASNLRVILRHITPNLSSFLLVTATLALPGYILGESTLSFLGLGIKEPMTSWGLL 323
Query: 257 LQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
L+ A V+ + W + PGL + I + F+ L + + + R
Sbjct: 324 LRDASKLEVVS--SYPWLLWPGLFVFISVLAFNFMGDALRDAADTQSR 369
>gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borrelia burgdorferi]
Length = 349
Score = 119 bits (295), Expect = 5e-26
Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
+ LGTD+ GRD+ +L G + S +G L+ I+G ++G IAG+ GG D+++
Sbjct: 128 YLLGTDNLGRDLLVRLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLPDKIITKTI 187
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
I+ +P + ++II+ A + +G+ + + +W AR VR Q SL + EFI AK
Sbjct: 188 EILYALPYLLIVIILMAIMERSIIGL-FIALAFVSWLTVARVVRGQVQSLSSSEFIQAAK 246
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIMLQQ 259
G + +II ++PN I + + ++ I+A L F+GLG + M S G ++Q
Sbjct: 247 TLGATNQRIILKHLIPNSIGMIVIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQN 306
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+ A + Y W P +V+ I + + F+ GL + F+P+
Sbjct: 307 GI---ATFVEYPWKVFIPAIVMTIFLLFMNFLGDGLRDAFDPK 346
>sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKC
>gi|628768|pir||S39596 nikC protein - Escherichia coli
>gi|581141|emb|CAA51661.1| (X73143) NikC [Escherichia
coli] >gi|912461|gb|AAB18453.1| (U00039) nikC
[Escherichia coli] >gi|1789889|gb|AAC76503.1| (AE000423)
transport of nickel, membrane protein [Escherichia coli
K12]
Length = 277
Score = 118 bits (294), Expect = 6e-26
Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 37/292 (12%)
Query: 17 KVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGI 76
++ II+ ++ALIAL P+D P LP + P+
Sbjct: 12 RLALIIIALLALIALTSQWWLPYD----------------PQAIDLP----SRLLSPDA- 50
Query: 77 VNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVL 136
H+LGTD GRDI+++L R S + L LGL+IG AG GG +D+
Sbjct: 51 ---QHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQAT 107
Query: 137 MMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIG--LTAWPWTARAVRAQTLSLKNRE 194
M + ++ + PT L + L G G+ +VII L+ W W AR VR+ +SL+ RE
Sbjct: 108 MRVADMFMTFPTSILSFFMVGVL---GTGLTNVIIAIALSHWAWYARMVRSLVISLRQRE 164
Query: 195 FIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMS-L 253
F+ ++LSG G +++ D + +I + ++ L G +L G+ F+GLG T +
Sbjct: 165 FVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEW 224
Query: 254 GIMLQQA--VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
G+M+ A +W +W PGL + I + + L + +P L
Sbjct: 225 GVMINDARQYIWTQPLQMFW-----PGLALFISVMAFNLVGDALRDHLDPHL 271
>sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075086|pir||D64184 oligopeptide transport system
permease protein oppC - Haemophilus influenzae (strain
Rd KW20) >gi|1574677|gb|AAC22776.1| (U32792)
oligopeptide ABC transporter, permease protein (oppC)
[Haemophilus influenzae Rd]
Length = 311
Score = 118 bits (294), Expect = 6e-26
Identities = 74/225 (32%), Positives = 113/225 (49%), Gaps = 5/225 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H+ GTD+ GRD+ + G R S L+GI ++ +G + G I+GY GG D ++M
Sbjct: 91 HFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTIGTIYGAISGYVGGKTDMLMMRFL 150
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
I+ P M +I++ + + + + IG AW AR VR QTLSLKN+EF+ A
Sbjct: 151 EILSSFPFMFFVILLVTLFG-QNIFLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEAAI 209
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGIMLQQ 259
+ G+ +II I+PN++ V + L+ G IL L F+GLG M S G +L
Sbjct: 210 VCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLILFESFLSFLGLGTQEPMSSWGALLSD 269
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
V+ W I P + + + FI GL + +P+ R
Sbjct: 270 GAAQMEVSP---WLLIFPAFFLCLTLFCFNFIGDGLRDALDPKDR 311
>gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [Listeria monocytogenes]
Length = 344
Score = 118 bits (294), Expect = 6e-26
Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 22/309 (7%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLIT----PFDNMGYYPLKFGNTTYPKPGTPALPPMSS 67
KNK V I++ ++ ++A+ GP ++ P N+ + + G +P +
Sbjct: 41 KNKAALVSLIVLALVIIMAIVGPYLSQNLGPEHNINRQITENASLPPKVQGFENMPFWNG 100
Query: 68 DT--------IYGPEGIVNVTHY-LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILG 118
IY I T+Y LG+D+ GRD +A++ G R S +I + A ++G
Sbjct: 101 HQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLVIG 160
Query: 119 LLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAW 176
+ G I+GY GG +D + + ++ IP + ++I++ L GI S+I I +T+W
Sbjct: 161 VAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILE---PGIVSIIIAIAMTSW 217
Query: 177 PWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILA 236
AR VR Q L KN+EF+ + G KI+ ++PNI + + + +I
Sbjct: 218 ITMARVVRGQVLKRKNQEFVMASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSAIFF 277
Query: 237 AVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGL 295
L FIGLG P SLG+++ V + + P +V+ I++ I GL
Sbjct: 278 EAFLSFIGLGLPAPAASLGVLVNDGYKTLQVLP---YMILYPCIVLCIIMIAFNLIADGL 334
Query: 296 DEVFNPRLR 304
+ F+P++R
Sbjct: 335 RDAFDPKMR 343
>gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC-2) [Sulfolobus
solfataricus]
Length = 536
Score = 117 bits (291), Expect = 1e-25
Identities = 73/271 (26%), Positives = 137/271 (49%), Gaps = 16/271 (5%)
Query: 39 FDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTY 98
F++ G Y ++F P L SD + E + + LGTD+ G ++A+ +
Sbjct: 264 FNSTGNYKVEFTINYIPNGPNSKLVVYLSDLYF--EFLGSRYGVLGTDNNGASVFAEYSQ 321
Query: 99 GMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAA- 157
G + I AG +G + G AGY GG +D++L T+ +L++P +A+LI++
Sbjct: 322 GGIFDLELAILAGLAIVFIGAVFGLFAGYYGGKLDQILTSFTDFILLLPGLAILIVLITI 381
Query: 158 ----YLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQ 213
+ + + +++ + +WP T+R +R Q L ++N F+ AK G+ +M+I
Sbjct: 382 FQQIFTVFPKDILIIIVLVILSWPPTSRTIRGQVLQVRNMAFVEAAKALGMSNMEI---- 437
Query: 214 IMPNIISYVFMVFILQFGGSILAAVG----LDFIGLGPTRGMSLGIMLQQAVLWNAVTLG 269
I +++ +VF + I Q I A +G LDF+G+G + + G ML ++ + G
Sbjct: 438 IRKHVLRHVFPIIIAQLIFDIPAVIGIESALDFLGIGILKFPTWGNMLGFSINASLDAPG 497
Query: 270 Y-WWWAIPPGLVIAILITGLYFINTGLDEVF 299
+ WWW + PG+ + +L L++I + +
Sbjct: 498 FAWWWILTPGIALFLLGVSLFYIGEAITRYY 528
>pir||E83419 probable permease of ABC transporter PA1808 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947792|gb|AAG05197.1|AE004607_3 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 339
Score = 116 bits (287), Expect = 4e-25
Identities = 92/319 (28%), Positives = 154/319 (47%), Gaps = 39/319 (12%)
Query: 16 FKVGFIIVIIMALIALFGPLITPFDNMGYYPL--KFGNTTY------------------- 54
F + F+ + LIA PL+ +D Y+P+ ++ TT+
Sbjct: 27 FLILFVGSLGAELIANDKPLVVHYDGGWYFPVFKRYPETTFGGEFPLEANYKSPYISQLI 86
Query: 55 -PKPGTPALPPM--SSDTIYGPEGIV-----NVTHYLGTDSFGRDIYAQLTYGMRSSFLI 106
K G PP+ S DTI + + ++LGTD RD+ A++ YG R S L
Sbjct: 87 AEKDGWVLWPPIPYSYDTINYELKVPAPAPPSAENWLGTDDQARDVLARVIYGFRVSILF 146
Query: 107 GITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGI 166
+T L++++G+ +G + GY GGW+D + + +P + LLII+A+++ +
Sbjct: 147 ALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEVWSGLPVLYLLIILASFVQPNFWWL 206
Query: 167 ESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPN--IISYVFM 224
+++ L +W VRA+ L +N E++ A+ G+ + I+F I+PN I + FM
Sbjct: 207 LGIML-LFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNSAIMFRHILPNAMISTLTFM 265
Query: 225 VFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAI 283
FIL G+I LDF+G G P SLG ++ Q L W I +V+A+
Sbjct: 266 PFILT--GAIGTLTSLDFLGFGLPPGAPSLGELVAQ----GKSNLQAPWLGISAFVVLAV 319
Query: 284 LITGLYFINTGLDEVFNPR 302
+++ L FI + F+PR
Sbjct: 320 MLSLLVFIGEAARDAFDPR 338
>gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]
Length = 338
Score = 114 bits (282), Expect = 2e-24
Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 5/227 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H GTD +GRD + ++ G S +G + +A +GL +G +AG+ GG +D ++M +
Sbjct: 77 HPFGTDKYGRDTFMRVLEGGWISLQVGFLSTFMAVTIGLTMGSVAGFFGGRVDNIIMRLI 136
Query: 141 NIMLVIPTMALLIIIAAYL----PYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFI 196
I+ P +A+ ++A P + + +I+GL +W AR +R Q L+L+ +EFI
Sbjct: 137 EILSSFPFLAIAYTLSAIFRERPPEFRLYVIVIILGLLSWTGLARLIRGQILALREQEFI 196
Query: 197 HLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLGI 255
+ G+ IF ++PN+++ V + L F SIL+ L F+ L T + + G
Sbjct: 197 VATRALGIKRRNQIFRHLVPNVLATVVVSATLTFASSILSEAFLSFLNLSVTEPIPTWGA 256
Query: 256 MLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+L +A + +WW I PG ++ I + I GL + +P+
Sbjct: 257 LLSKASENSTSLRTFWWIWIFPGAMLFFFIMSINLIGEGLRDSIDPK 303
>pir||A83389 probable permease of ABC transporter PA2060 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948068|gb|AAG05448.1|AE004632_7 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 338
Score = 114 bits (282), Expect = 2e-24
Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 10/225 (4%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
++LGTD GRD+ A++ YG+R S L + +++LG+ G + GY GGWID
Sbjct: 120 NWLGTDDQGRDVLARVIYGLRLSILFALGLTLASSLLGICAGAVQGYYGGWIDLFGQRFI 179
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+ +P + LLII+A+ L GVG I+ L +W VRA+ L ++ E++ A+
Sbjct: 180 EVWSGLPMLYLLIILAS-LVQPGVGWLLAIMLLFSWTSLVDVVRAEFLRGRHLEYVKAAR 238
Query: 201 LSGLGDMKIIFDQIMPN--IISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIML 257
GLGD ++F I+PN + + F+ F+L G++ LDF+G G P SLG ++
Sbjct: 239 TLGLGDAGVMFRHILPNAMVATLTFLPFLL--CGAVTTLTALDFLGFGLPPGSPSLGELV 296
Query: 258 QQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
Q L W + +V+A L++ L FI + + F+PR
Sbjct: 297 GQ----GRDNLQAPWLGLTVFVVLATLLSLLVFIGEAVRDAFDPR 337
>sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TQ
>gi|1486421|emb|CAA92399.1| (Z68203) OppC homologue
[Rhizobium sp.] >gi|2182647|gb|AAB91870.1| (AE000098)
Y4tQ [Rhizobium sp. NGR234]
Length = 291
Score = 113 bits (279), Expect = 4e-24
Identities = 69/222 (31%), Positives = 120/222 (53%), Gaps = 6/222 (2%)
Query: 82 YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITN 141
+ GTD+ GRD++A+ YG R S ++G+ + A + GLLIG IAGY + D ++M + +
Sbjct: 70 WFGTDNLGRDVFARTIYGARISLIVGLLSAVCAAVCGLLIGVIAGYSRTF-DNIIMRVMD 128
Query: 142 IMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKL 201
++ IPT L I + + L G+GI V I + P R VR+ LS+++R ++ A
Sbjct: 129 GLMSIPTFLLAIALLS-LTGPGIGILIVAIAIPETPAVTRLVRSVVLSVRSRPYVEAALC 187
Query: 202 SGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQA 260
G ++++ I+P+ I + + +I+ GL FIG+G P+ S G M+ +
Sbjct: 188 GGARLPRVLWRHILPSTIPPLMVQSATVCASAIMTEAGLSFIGVGVPSEIPSWGNMIANS 247
Query: 261 VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
L+ A+ PGL +A+ + + + GL ++F+PR
Sbjct: 248 RLFLAIAP---LTIFAPGLCLAVTVLAVNLLGDGLRDMFDPR 286
>gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]
Length = 337
Score = 113 bits (279), Expect = 4e-24
Identities = 77/305 (25%), Positives = 148/305 (48%), Gaps = 22/305 (7%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALP-----PMS 66
++K +GF+++ ++ L+A+FGP+++ Y G P P P + P
Sbjct: 42 QHKGAMIGFVLLSLIILLAIFGPMVSKHS---YKEQDLGRAKMP-PKIPVIENVHWLPFD 97
Query: 67 SDTIYGPEGI----VNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIG 122
YG + + + GTD GRD++ + G R S I + A + ++G+ G
Sbjct: 98 GTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYG 157
Query: 123 FIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGL--TAWPWTA 180
I+ + GG +D ++ I I+ IP + ++I++ + G GI S+ + + T W +
Sbjct: 158 GISAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIM---GSGIWSITLAMAITGWIGMS 214
Query: 181 RAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGL 240
R VR Q L LKN+E++ ++ G + ++I ++PN++ + ++ + ++ L
Sbjct: 215 RIVRGQILKLKNQEYVLASRTLGATNTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFL 274
Query: 241 DFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVF 299
FIGLG SLG ++ + ++ Y P +VI+ILI + GL +
Sbjct: 275 SFIGLGIQPPFASLGSLVNDG--YKSIQT-YPHMMFIPAVVISILILAFNLMADGLRDAL 331
Query: 300 NPRLR 304
+P++R
Sbjct: 332 DPKMR 336
>pir||C64551 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2313343|gb|AAD07318.1|
(AE000544) oligopeptide ABC transporter, permease
protein (oppC) [Helicobacter pylori 26695]
Length = 338
Score = 111 bits (276), Expect = 8e-24
Identities = 98/341 (28%), Positives = 152/341 (43%), Gaps = 43/341 (12%)
Query: 1 MSLKSTLKIALKNKKFKVGFIIVIIMALIALF---------GPLITPFDNMGYYPL---- 47
MS ++I K + F + + +AL+AL PL DN Y+P+
Sbjct: 1 MSSLFKMRILSFKKNKRAVFSLYLFIALLALSLLAPLWVNDRPLFIYKDNKAYFPMFKNY 60
Query: 48 ---KFGN-----TTYPKPGTP-----------ALPPMSSDTIYGPEGIVNVT-----HYL 83
+FG T Y P AL P S DTI T H L
Sbjct: 61 AEVEFGGDFFTPTDYNDPYVQNTLLKDAFIIHALIPYSYDTIIMDLDSPAPTPPSFKHLL 120
Query: 84 GTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIM 143
GTD RD+ A+L YG R S + GI + ++G+ +G GY GG +D V ++ I
Sbjct: 121 GTDDQARDVLARLVYGYRVSLIFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEIW 180
Query: 144 LVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSG 203
IP + LLI+I++ I ++ L +W ++ VR + L +N ++ A+ G
Sbjct: 181 SAIPMLFLLIVISSAF-NSNFWIILFLVLLFSWMGLSQVVRTEFLKARNMDYTKAARALG 239
Query: 204 LGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQAVL 262
+ D+KIIF ++PN + SI V LDF+G G P SLG ++ Q
Sbjct: 240 VNDLKIIFYHVLPNALVATITYVPFLMAASISTLVSLDFLGFGMPIGSASLGELVNQGK- 298
Query: 263 WNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
+ +T + AI + I++L++ L FI G+ + FN +
Sbjct: 299 -DNLTTPH--LAIVAFVAISLLLSVLVFIGEGVRDAFNANM 336
>gb|AAB38742.1| (U78885) transport system permease homolog [Listeria monocytogenes]
Length = 335
Score = 111 bits (275), Expect = 1e-23
Identities = 86/301 (28%), Positives = 141/301 (46%), Gaps = 24/301 (7%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITP------------FDNMGYYPLKFGNTTYP-KPG 58
KNK V I++ ++ ++A+ GP ++ +N P G P G
Sbjct: 41 KNKAALVSLIVLALVIIMAIVGPYLSQNLGPKHDINRQITENASLPPKVQGFENMPFWNG 100
Query: 59 TPALPPMSSDTIYGPEGIVNVTHY-LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATIL 117
++ D IY I T+Y LG+D+ GRD +A++ G R S +I + A I+
Sbjct: 101 HQSIGGEDVD-IYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLII 159
Query: 118 GLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTA 175
G+ G I+GY GG +D + + ++ IP + ++I++ L GI S+I I +T+
Sbjct: 160 GVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILE---PGIVSIIIAIAMTS 216
Query: 176 WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSIL 235
W AR VR Q L LKN+EF+ + G KI+ ++PNI + + + +I
Sbjct: 217 WITMARVVRGQVLKLKNQEFVMASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSAIF 276
Query: 236 AAVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTG 294
L FIGLG P SLG+++ V + + P +V+ I++ I G
Sbjct: 277 FEAFLSFIGLGLPAPAASLGVLVNDGYKTLQVLP---YMILYPCIVLCIIMIAFNLIADG 333
Query: 295 L 295
L
Sbjct: 334 L 334
>pir||A70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960088|emb|CAA17986.1|
(AL022121) dppC [Mycobacterium tuberculosis]
Length = 266
Score = 110 bits (273), Expect = 2e-23
Identities = 74/286 (25%), Positives = 130/286 (44%), Gaps = 32/286 (11%)
Query: 22 IVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVTH 81
+++++ ++A F L T D TY P L P ++ H
Sbjct: 6 LILLILVVAAFPSLFTAAD-----------PTYADPSQSMLAPSAA-------------H 41
Query: 82 YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITN 141
+ GTD G DIY++ YG R+S +G+ A ++G +G +AG+ G WID V+ +T+
Sbjct: 42 WFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTD 101
Query: 142 IMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKL 201
+ L +P + I++ + +R V I+ L WP AR R L ++ +++ AK
Sbjct: 102 VFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKA 161
Query: 202 SGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLG--IMLQ 258
GL +I+ +PN + V V + G I+ L ++G+G PT +S G I +
Sbjct: 162 LGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVA 221
Query: 259 QAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
Q L + + ++ P +AI + + L + +P R
Sbjct: 222 QTRLRSGSPILFY-----PAGALAITVLAFMMMGDALRDALDPASR 262
>pir||D70431 oligopeptide transport system permease - Aquifex aeolicus
>gi|2983881|gb|AAC07433.1| (AE000743) oligopeptide
transport system permease [Aquifex aeolicus]
Length = 331
Score = 110 bits (273), Expect = 2e-23
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 8/221 (3%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
+ LGTD GRD++++L YG R S + + +G L+G I+GY GG +D ++M +
Sbjct: 102 YLLGTDKLGRDVFSRLLYGGRYSLGVALIGTFTTFFIGALVGGISGYFGGKVDTLIMRLV 161
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVG-----IESVIIGLTAWPWTARAVRAQTLSLKNREF 195
I++ IP LL+ + + P I I+ W AR VR LS++ +EF
Sbjct: 162 EILMSIPAFYLLLSLRSVFPLELSSGEVFLIIVFILSFLGWAGLARVVRGMVLSIREKEF 221
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGM-SLG 254
+ AK G ++IIF I+PN Y+ + + IL L +GLG + S G
Sbjct: 222 VLAAKTYGASSLRIIFKHILPNTYFYLIVSATMSIPAFILGEASLSLLGLGIQEPVPSWG 281
Query: 255 IMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGL 295
ML + + N L ++ W PG+ I + I + L
Sbjct: 282 NMLSE--VRNVSVLTFYPWLASPGVAIFLTILAFNLLGDAL 320
>pir||F71957 ABC transporter, permease - Helicobacter pylori (strain J99)
>gi|4154752|gb|AAD05812.1| (AE001461) ABC transporter,
permease [Helicobacter pylori J99]
Length = 338
Score = 110 bits (273), Expect = 2e-23
Identities = 94/328 (28%), Positives = 147/328 (44%), Gaps = 41/328 (12%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLIT---PF----DNMGYYPL-------KFGN-----T 52
KNK+ + I + ++L PL P DN Y+P+ +FG T
Sbjct: 14 KNKRAVFSLYLFIALLALSLLAPLWVNDRPLFIYKDNKAYFPMFKNYAEVEFGGDFFTPT 73
Query: 53 TYPKPGTP-----------ALPPMSSDTIYGPEGIVNVT-----HYLGTDSFGRDIYAQL 96
Y P AL P S DTI T H LGTD RD+ A+L
Sbjct: 74 DYNDPYVQNTLLKDAFIIHALIPYSYDTIIMDLDSPAPTPPSFKHLLGTDDQARDVLARL 133
Query: 97 TYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIA 156
YG R S + GI + ++G+ +G GY GG +D V ++ I IP + LLI+I+
Sbjct: 134 VYGYRVSLVFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEIWSAIPMLFLLIVIS 193
Query: 157 AYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMP 216
+ I ++ L +W ++ VR + L +N ++ A+ G+ D+KIIF ++P
Sbjct: 194 SAF-NSNFWIILFLVLLFSWMGLSQVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLP 252
Query: 217 NIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAI 275
N + SI V LDF+G G P SLG ++ Q + +T + A+
Sbjct: 253 NALVATITYIPFLMAASISTLVSLDFLGFGMPIGSASLGELVNQGK--DNLTTPH--LAV 308
Query: 276 PPGLVIAILITGLYFINTGLDEVFNPRL 303
+ I++L++ L FI G+ + FN +
Sbjct: 309 VAFVAISLLLSVLVFIGEGVRDAFNANM 336
>dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]
Length = 295
Score = 110 bits (272), Expect = 2e-23
Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 26/284 (9%)
Query: 19 GFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVN 78
G ++ + LI +F PL+ PFD + G +PP + P G ++
Sbjct: 32 GLWCLVFIVLITIFAPLLAPFDAQA------------QSGELLVPPS-----WAPAGTID 74
Query: 79 VTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMM 138
++LGTD GRDI ++L G + +F + +A ++G LIG +AG G + L
Sbjct: 75 --YFLGTDDLGRDILSRLIMGSQLTFGAAVAITAIAAVVGCLIGVLAGMTKGLLSSTLNH 132
Query: 139 ITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHL 198
+ + ++ IP++ L II A+L + G I + I L P R+V + +++I
Sbjct: 133 LLDTVMSIPSLLLAIIFVAFLGFGGFNI-LLAICLALIPRFIRSVYIAVHTEVEKDYIMA 191
Query: 199 AKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQ 258
A+L G D +++ I+PNI++ + L +IL L F+GLG +
Sbjct: 192 ARLDGANDFYLLWSSILPNILTVIAAEITLALSAAILDITALGFLGLGAQAPST----EW 247
Query: 259 QAVLWNAVTLGYW--WWAIPPGLVIAILITGLYFINTGLDEVFN 300
A+L ++V L Y W PGL I + L + G+ + N
Sbjct: 248 GAILGDSVELIYIAPWTVTLPGLTIMFTVITLNLVGEGVRQALN 291
>emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related protein [Thermoplasma
acidophilum]
Length = 716
Score = 109 bits (270), Expect = 4e-23
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 1/221 (0%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNI 142
LGT G+D+++ + IG+ G ++ ++IG + GY G + ++ +
Sbjct: 493 LGTTDHGKDVWSLFIGSFPTDLYIGVVVGIGILLISMVIGMLIGYFTGIVSSLVETFSLA 552
Query: 143 MLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLS 202
+ +IP + LLI++A+ + +G+ +V+ L+ WP+ + SLK+R F+ AK+S
Sbjct: 553 VYLIPGLPLLIVVASIVGPSLIGLIAVLTFLS-WPFPTFTLIGIIRSLKSRAFVEAAKIS 611
Query: 203 GLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQAVL 262
G M I+ ++PNI + + + GG++ A L +G+ P + G ML
Sbjct: 612 GASTMYILRKHMLPNITPILVYLTAINIGGAVAAVSTLQILGVAPLNVPTWGGMLSGFYS 671
Query: 263 WNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
+ WW IPP + + + I F++ GLDEV NPRL
Sbjct: 672 DYFDLIIAPWWFIPPIVALTLFIFAFIFVSRGLDEVVNPRL 712
>sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDQ
>gi|7442414|pir||H64901 probable oligopeptide transport
protein b1485 - Escherichia coli
>gi|1742425|dbj|BAA15140.1| (D90789) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1742436|dbj|BAA15150.1| (D90790) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1787760|gb|AAC74558.1| (AE000245) putative transport
protein [Escherichia coli K12]
Length = 298
Score = 109 bits (269), Expect = 6e-23
Identities = 78/295 (26%), Positives = 133/295 (44%), Gaps = 45/295 (15%)
Query: 21 IIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVT 80
+I+++M L+ +F P + D P T LPP ++
Sbjct: 38 VIIVLMLLMMIFSPWLATHD-----PNAIDLTAR------LLPPSAA------------- 73
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H+ GTD GRD+++++ G + S L G+ +A ++G L+G ++G GG D ++M I
Sbjct: 74 HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIM 133
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTARAVRAQTLSLKNREFIHL 198
+IML IP++ L + +AA L G + + + I + P+ R R Q L ++ ++
Sbjct: 134 DIMLSIPSLVLTMALAAAL---GPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQA 190
Query: 199 AKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQ 258
AK G +I I+ N + + + L G +IL A L FIGLG Q
Sbjct: 191 AKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ---------Q 241
Query: 259 QAVLWNAV-------TLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRGE 306
+ W A+ L WW+ PG I + G G+ ++ +P+ G+
Sbjct: 242 PSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGK 296
>dbj|BAB04288.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 277
Score = 108 bits (268), Expect = 7e-23
Identities = 80/249 (32%), Positives = 127/249 (50%), Gaps = 38/249 (15%)
Query: 5 STLKIALKNKK-FKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALP 63
S+++IALK++K V +I+ + L+A+ P I P D P++ LP
Sbjct: 3 SSMQIALKSQKTVVVCSVILFVFFLLAILAPWIAPHD-----PIQVNLAL------KLLP 51
Query: 64 PMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSF----LIGITAGGLATILGL 119
P + + LGTD GR ++L +G R S LI I++ G+ GL
Sbjct: 52 P-------------SWEYPLGTDQLGRCNLSRLLFGARVSLGFATLIFISSLGI----GL 94
Query: 120 LIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTA--WP 177
L+G IAGY+GGWID VLM ++ P + L++ + G G+ V++ L W
Sbjct: 95 LVGAIAGYRGGWIDSVLMRFCEGVMAFPNLVLVLGLVGLF---GPGLWQVVLALVMVQWV 151
Query: 178 WTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAA 237
+ AR R+ +SLK + FI A++SG KII I+PN++ + ++ L+ G +I+
Sbjct: 152 YYARMFRSMIVSLKEQNFITAARISGSSPWKIIRRHIIPNVLPPIVVIGTLEMGWAIMDI 211
Query: 238 VGLDFIGLG 246
L F+GLG
Sbjct: 212 SALSFLGLG 220
>gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T45530 probable
oligopeptide transport protein agaC [imported] -
Agrobacterium tumefaciens plasmid pTi15955
>gi|2665706|gb|AAB88466.1| (AF242881) agaC
[Agrobacterium tumefaciens]
Length = 275
Score = 108 bits (268), Expect = 7e-23
Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 45/293 (15%)
Query: 21 IIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVT 80
I+V+ + +A+ GPLI P D PL +P +
Sbjct: 17 IVVLAVLTVAILGPLIAPND-----PLAINQNAVHQPSS-------------------AQ 52
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H+LGTD FGRDI ++L G+R + L+ + + +A + G G I Y I +M
Sbjct: 53 HWLGTDEFGRDILSRLLIGIRPTMLVAVISTIIAAVGGTACGIIGAYSRPTISFFVMRAV 112
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+IML P + LL ++A GV SV+IG+ P AR ++ L + ++EF+
Sbjct: 113 DIMLSFPAI-LLALLAVGFWRSGVASLSVVIGIIFIPQFARVAQSAALQVISQEFVEAEH 171
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-----PTRGMSLGI 255
G ++++ I+PNI+S + + L +IL GL F+GLG P+ G +G
Sbjct: 172 AMGARYLRVVMRAILPNILSPLVVQATLTIAAAILLESGLSFLGLGIVPPEPSWGQMIG- 230
Query: 256 MLQQAVLWNAVTLGYW----WWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
GY + + P L +A+ + + + L + +PRLR
Sbjct: 231 ----------TARGYLGQNPMYVVWPSLCLALTVLAINVLGDALRDHLDPRLR 273
>gi|10954944 Probable accE [Agrobacterium tumefaciens]
>gi|6498297|dbj|BAA87749.1| (AB016260) Probable accE
[Agrobacterium tumefaciens]
Length = 286
Score = 108 bits (267), Expect = 9e-23
Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 28/285 (9%)
Query: 21 IIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVT 80
I + ++ + + + PFD + PL + PG P
Sbjct: 29 IWIAVVVFVGITAQWLAPFDYLQQSPL----ARFAPPGAPG------------------- 65
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LGTD GRD+ + + ++S +I + + +G +GF+A + GGW+D ++M
Sbjct: 66 HLLGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFA 125
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+ +P + + + A+L + I +++G+ ++ AR R LS + A+
Sbjct: 126 DAKASVPFIIFALGVLAFLGSSPL-ILLMLVGVASFERYARLTRGLVLSANQEGYAEAAR 184
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQ 259
+ G+ ++I ++PNI + + L F IL GL F+GLG SLG+M+
Sbjct: 185 IVGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVAD 244
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ A+ WW PG+VI + + + L + F+ RLR
Sbjct: 245 GRNYIAIA---WWLIALPGVVIVLTTLSISLLGDYLRDRFDARLR 286
>pir||G75529 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458041|gb|AAF09944.1|AE001896_9
(AE001896) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 339
Score = 107 bits (265), Expect = 2e-22
Identities = 80/322 (24%), Positives = 135/322 (41%), Gaps = 41/322 (12%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLITP----------FDNMG--YYPLKFGNTTYPKP-- 57
+N GF+IV++ L+AL PLI + G Y P + P
Sbjct: 30 RNPLAVTGFVIVLLFGLMALLAPLIAKPTGNCLRDLGMETQGQIYQPGFALKAIFASPPE 89
Query: 58 ---------GTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGI 108
P S + P G VN G +I+ L +G R++ +
Sbjct: 90 CYKMERVSFAQEPAPASSVTGTFAPFGTVN----------GYNIFYGLIWGTRTALKMSF 139
Query: 109 TAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIES 168
G+ +G+LIG I+G+ GGW+D ++ I N++ +P + L + I L + G +
Sbjct: 140 IIVGITLSIGILIGAISGFYGGWVDGLIQGIINVIYALPPLVLTVTILTILRAKNPGGDP 199
Query: 169 V-----IIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVF 223
+ +T W AR +R L + E++ A+ G DM++I ++PN ++ VF
Sbjct: 200 TGPIIFAMCITGWATYARVIRGDILKTRQLEYVDAARALGARDMRMILRHVVPNSLTTVF 259
Query: 224 MVFILQFGGSILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIA 282
+ +L L+ L F+GLG G S G ++ A W + YW+ P + I
Sbjct: 260 TLAVLALATVPLSVAALSFLGLGFESGYSEWGQLIDFARAW--LKPDYWYVLAFPAIFIV 317
Query: 283 ILITGLYFINTGLDEVFNPRLR 304
+ GL + +P+ R
Sbjct: 318 LFSLAFNLFGDGLRDALDPKTR 339
>pir||C71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328913|gb|AAC68078.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 578
Score = 106 bits (261), Expect = 5e-22
Identities = 56/215 (26%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 90 RDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTM 149
+D+ A L +G+R + ++G +A +G+++G ++GY GG +D +L +T I +P +
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVSIALFIGIIVGLLSGYFGGKVDMLLSRVTEIWETMPML 425
Query: 150 ALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKI 209
+L+++ A + + ++SV++G W +R VR +TL +N ++ A I
Sbjct: 426 FILMLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAATNLCYSHYHI 485
Query: 210 IFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLG 269
+ QI+PN+I V + I GL F+GLG S G +L++ V
Sbjct: 486 MVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLGEESSASWGNLLREGVTAFPSESA 545
Query: 270 YWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
W PP +++ +L+ + I G+ + +P+++
Sbjct: 546 ILW---PPAIMLTLLLMAIAVIGDGIRDALDPKMQ 577
>pir||F81668 peptide ABC transporter, permease protein, probable TC0763
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190788|gb|AAF39566.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 578
Score = 106 bits (261), Expect = 5e-22
Identities = 58/216 (26%), Positives = 110/216 (50%), Gaps = 3/216 (1%)
Query: 90 RDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTM 149
+D+ A L +G+R + ++G +A +G ++G ++GY GG ID +L +T I +P +
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVTIALFIGTIVGLLSGYFGGKIDMLLSRVTEIWETMPML 425
Query: 150 ALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKI 209
+L+++ A + + ++SV++G W +R VR +TL +N ++ A I
Sbjct: 426 FILMLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAATNLCYSHYHI 485
Query: 210 IFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLG 269
+ QI+PN+I V + I GL F+GLG S G +L++ V
Sbjct: 486 MVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLGEESSASWGNLLREGVSAFPSESA 545
Query: 270 YWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLRG 305
W PP +++ +L+ + I G+ + +P+++G
Sbjct: 546 ILW---PPAVMLTLLLMSIAVIGDGIRDALDPKMQG 578
>pir||T03434 probable transport protein accE - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153181|gb|AAC17201.1| (AF010180) AccE
[Agrobacterium tumefaciens]
Length = 286
Score = 105 bits (260), Expect = 6e-22
Identities = 70/285 (24%), Positives = 126/285 (43%), Gaps = 28/285 (9%)
Query: 21 IIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVT 80
I + ++ + + + PFD + PL + PG P
Sbjct: 29 IWIAVVVFVDITAQWLAPFDYLQQSPL----ARFAPPGAPG------------------- 65
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LGTD GRD+ + + ++S +I + + +G +GF+A + GGW+D ++M
Sbjct: 66 HLLGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFA 125
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+ +P + + + A+L + I + +G+ ++ AR R LS + A+
Sbjct: 126 DAKASVPFIIFALGVLAFLGSSPL-ILLMRVGVASFERYARLTRGLVLSANQEGYAEAAR 184
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQ 259
+ G+ ++I ++PNI + + L F IL GL F+GLG SLG+M+
Sbjct: 185 IVGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVAD 244
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
+ A+ WW PG+VI + + + L + F+ RLR
Sbjct: 245 GRNYIAIA---WWLIALPGVVIVLTTLSISLLGDYLRDRFDARLR 286
>pir||C72059 peptide ABC transporter, permease protein, probable CP0151
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376892|gb|AAD18736.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189087|gb|AAF38033.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39] >gi|8978969|dbj|BAA98804.1| (AP002547)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 579
Score = 103 bits (254), Expect = 3e-21
Identities = 55/215 (25%), Positives = 108/215 (49%), Gaps = 3/215 (1%)
Query: 90 RDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLVIPTM 149
+D+ A L +G+R + ++ +A +G++IG ++GY GG +D +L T I +P +
Sbjct: 366 KDLLAALVFGIRIALVVAGIGITIALAIGIMIGLVSGYFGGTVDMILSRFTEIWETMPVL 425
Query: 150 ALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKI 209
+L+++ + + + + +V++G +W +R VR + L ++R ++ A G I
Sbjct: 426 FILMLVISITQQKSLLLNTVLLGCFSWTGFSRYVRIEVLKQRDRGYVLAATNLGYSHYYI 485
Query: 210 IFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLG 269
+ QI+PN I V + I GL F+GLG S G ++++ V
Sbjct: 486 MVHQILPNAIVPVISLVPFAMMAMISCEAGLTFLGLGEESSASWGNLMREGVTGFPAESA 545
Query: 270 YWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
W PP +++ +L+ + I G+ + +PRL+
Sbjct: 546 VLW---PPAIILTMLLIAIALIGDGVRDALDPRLQ 577
>gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; DppC2 [Halobacterium
sp. NRC-1]
Length = 526
Score = 102 bits (253), Expect = 4e-21
Identities = 74/317 (23%), Positives = 140/317 (43%), Gaps = 32/317 (10%)
Query: 17 KVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTT-YPKPGTPALPPM-------SSD 68
K G +++++ ++LFG + P +GN Y T A+ + +S
Sbjct: 201 KFGIVVLVLFLTMSLFGTTLAPSTVQQNITASYGNEVQYVSDDTGAVETIPAGEANFNSK 260
Query: 69 TIYGPEGIVNVTHY--------LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLL 120
+ P V V Y GT GRD++ + G ++ ++ A G+A + L
Sbjct: 261 SKGNPAQNVGVMTYDDYGRFHPFGTLPNGRDLFTYMMGGAETTLMVTGIAIGMAGFIAAL 320
Query: 121 IGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLP-------YRGVGIESVIIGL 173
+ ++ Y GG +D ++ + + ++ IP + LLI+++ + G + +++ GL
Sbjct: 321 LALVSSYYGGTVDLSVLTLADGIVSIPQLLLLIMVSVVFQDHWLKSVFNGGLLLALVFGL 380
Query: 174 TAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGS 233
T WP R++R L + E++ AK G + ++P ++ Y+ + + GG
Sbjct: 381 TTWPVLWRSLRGPALQVAEEEWVDAAKSFGQQPTVTMRKHMLPYVLGYLLIYASMTVGGI 440
Query: 234 ILAAVGLDFIGLG-----PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGL 288
++A L F+G G PT I Q V+ W A+ PGL+I +L+TG
Sbjct: 441 VIAMASLSFLGNGLGITPPTPAWGRAISQGQPY----VSSASWHIALIPGLIIVVLVTGA 496
Query: 289 YFINTGLDEVFNPRLRG 305
+ G+ + +P G
Sbjct: 497 NALGDGIRDAIDPESEG 513
>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
Length = 714
Score = 101 bits (250), Expect = 9e-21
Identities = 67/217 (30%), Positives = 105/217 (47%), Gaps = 7/217 (3%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H+ GTD GRD+ ++L G S + A I+ L IG +GY G W D +LM I
Sbjct: 364 HWFGTDGLGRDVLSRLLAGASVSLRFSVIVVVTALIVALPIGLFSGYIGRWPDTLLMRIM 423
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+ P + L I I L + + + + P AR +RAQ LS++ FI ++
Sbjct: 424 EGIHSFPAIVLAIAIVGILGPSLLN-AGIAVAVAVVPGFARLIRAQALSVREEVFIDASR 482
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG--PTRGMSLGIMLQ 258
G +I+ + PN++S + + + G ++LA GL ++GLG P + S G ML+
Sbjct: 483 AIGTPTRRILLRHLFPNVLSPLIVQVAVVLGFALLAEAGLSYLGLGVQPPQA-SWGSMLR 541
Query: 259 QAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGL 295
QA L W +PPG+ I +++ I GL
Sbjct: 542 QA---TDSQLTNPWGVLPPGIAIVLVVLAFNTIGEGL 575
>pir||H72451 probable peptide transport system permease protein APE2260 -
Aeropyrum pernix (strain K1) >gi|5105961|dbj|BAA81272.1|
(AP000064) 280aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 280
Score = 101 bits (250), Expect = 9e-21
Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 38/291 (13%)
Query: 19 GFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVN 78
G IV ++AL P I P Y P + P P+L
Sbjct: 19 GLAIVAFYLVVALAAPYIAP-----YSPHSKVSDVPEHPSPPSLK--------------- 58
Query: 79 VTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMM 138
H GT+ G D+++++ G R + + + + +G+ +G ++GY GG +D VL +
Sbjct: 59 --HPFGTNEIGYDMFSRVVLGTRIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVLSV 116
Query: 139 ITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAW--PWTARAVRAQTLSLKNREFI 196
+ + + P + L I IA+ L G + + I L P R RA+ + +K +++I
Sbjct: 117 VMDSLYAFPGIVLAIAIASVL---GPSVLNAAIALMVVYVPAYFRMTRARVIEIKTQDYI 173
Query: 197 HLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGL-----GPTRGM 251
++ G +I+F ++P ++ V +V+ L +IL GL F GL P G+
Sbjct: 174 VALRVLGAPHSRIMFRHVLPGVMPTVLVVYGLASADAILTEAGLSFFGLVVTYPAPDWGL 233
Query: 252 SLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
+ ++Q + G WW + PGL I L G I GL E F R
Sbjct: 234 DISYGIKQFL------SGSWWLTLFPGLAILTLALGFAMIGEGLAERFRAR 278
>pir||T45277 oligopeptide transport integral membrane protein bldKA [imported] -
Streptomyces coelicolor >gi|1532201|gb|AAB09554.1|
(U68036) BldKA [Streptomyces coelicolor A3(2)]
Length = 335
Score = 101 bits (249), Expect = 1e-20
Identities = 75/302 (24%), Positives = 137/302 (44%), Gaps = 31/302 (10%)
Query: 18 VGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTI-YGPEGI 76
+ +V+ +IA PLI+ + +G Y G + T+ P G
Sbjct: 45 ISAFVVLFFFVIAAAAPLIS---------MVYGKDPYTLYGQDNPDLLDMFTMPAAPYGG 95
Query: 77 VNVTHYLGTD-SFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEV 135
++ + G + GRD++ QL YGMR+S + A + T+LG+LIG GY GG I+
Sbjct: 96 IDGDFWFGIEPGLGRDVFTQLLYGMRNSMATALAATIIMTVLGVLIGLAGGYFGGKIEYW 155
Query: 136 LMMITNIMLVIPTM-----ALLIIIAAYL-------PYRGVGIESVIIGLTAWPWTARAV 183
L IT+ + +P+ A+ +I ++ Y +++ W AR V
Sbjct: 156 LGRITDFFMALPSQLFFVAAMPVITTVFVAPDKETPTYVRAAAIIIVLSFLGWMSMARIV 215
Query: 184 RAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFI 243
R +SL++REFI A++SG +I+ +++PNI++ + L +IL+ L F+
Sbjct: 216 RGAKMSLRDREFIEAARISGASPWRILRKELLPNIVTPTLVQATLTLPSTILSIAFLSFV 275
Query: 244 GLG---PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
G+G PT + ++ ++ + PG+ + I I + + + F+
Sbjct: 276 GVGYVEPTPDWGRMFAIGADIVEQDP-----YYMLFPGVAMVIFIVAFNLLGDSVRDAFD 330
Query: 301 PR 302
P+
Sbjct: 331 PK 332
>gb|AAC18098.1| (AF058302) membrane component of putative ABC transporter
[Streptomyces roseofulvus]
Length = 274
Score = 100 bits (247), Expect = 2e-20
Identities = 58/217 (26%), Positives = 103/217 (46%), Gaps = 5/217 (2%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LG D GRD+YA++ +G S A L + G +G +AG G +D V+M +
Sbjct: 56 HPLGADHVGRDLYARVVHGTARSLGTAFAAVALGVLAGGALGAVAGVAGRAVDAVVMRVV 115
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+++L +P + L + + + L + G + +G+ AR RAQ ++ E++ A+
Sbjct: 116 DVLLAVPGLLLSLAVVSALGF-GTAQVACAVGVGTVGGIARVSRAQVRRVRGGEYVEAAR 174
Query: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIMLQQ 259
L+G+ I+ I+PN V + + + G ++L L F+G G P G ++
Sbjct: 175 LAGVAGPLILLRHIVPNAAPPVLALAVTECGTAVLGVASLGFLGFGAPPPAPEWGALIST 234
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLD 296
+ WW PGLV+ L+ L+ + L+
Sbjct: 235 G---RDYLVSAWWLTTLPGLVLVALVVALHRVGRALE 268
>dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 283
Score = 100 bits (247), Expect = 2e-20
Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 32/251 (12%)
Query: 1 MSLKSTLKIALKNK---KFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKP 57
MS+ S+ ++ K K + + FI ++++A+ AL+ L D
Sbjct: 1 MSVLSSRELIRKKKNSWRAIIAFICLVVVAVSALYAFLYLRHD----------------- 43
Query: 58 GTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATIL 117
P L M + + G +++ H LGTD GRD+ +L G + + + A +A +
Sbjct: 44 --PTLANMG-ERLQG----MSLQHPLGTDHLGRDVLTRLLLGAQQTVGYSLMALLVALFI 96
Query: 118 GLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWP 177
G+ G I+GYKGG +D V M + + L P + I+++ L G GI ++++ +
Sbjct: 97 GIPFGLISGYKGGIVDRVFMRVADGFLAFPDTIVAIVLSGLL---GPGIGNLVLAIVMVK 153
Query: 178 WT--ARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSIL 235
W AR VR+ L+ ++++ +A+++GL KI+ + P+I+ +V ++ L G IL
Sbjct: 154 WVSYARLVRSTVLTEVEKDYVAIARINGLSSSKIMRKHLFPHIVGHVLVMATLDLGKIIL 213
Query: 236 AAVGLDFIGLG 246
L +IGLG
Sbjct: 214 LISALSYIGLG 224
>gb|AAG20459.1| (AE005118) oligopeptide transport permease protein; AppC
[Halobacterium sp. NRC-1]
Length = 386
Score = 100 bits (247), Expect = 2e-20
Identities = 78/304 (25%), Positives = 134/304 (43%), Gaps = 38/304 (12%)
Query: 12 KNKKFKVGFIIVIIMALIALFGPLI-----TPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
KN+ V + +M ++ + GPL+ T F N ++PP+
Sbjct: 99 KNQVAVVALGWLAVMFVVGVLGPLLIDPPTTQFTNQ------------------SVPPVG 140
Query: 67 SDTIYGPEGIVNVTHY---LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGF 123
T G G+V + LGT + G+ I + YGMR S +G+ A + I+G +G
Sbjct: 141 MSTTVG--GVVKTGTWQYPLGTSAKGQGILTLVVYGMRVSMEVGLIATIFSVIIGSAVGA 198
Query: 124 IAGYKG----GWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWT 179
+A + G IDE+LM ++ V P LL+++ YL + + ++ G +W
Sbjct: 199 VAAFATSVGRGRIDELLMRYVDVQSVFPDFMLLLLLT-YLFGSELWMIILLFGFFSWEGI 257
Query: 180 ARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVG 239
AR VR + L + E+I A+ SG + I+ ++PN + + + + G IL
Sbjct: 258 ARTVRGEALQRASEEYITAAEASGANMLYIVRQHLIPNSANSIIISATVGIPGFILGEAS 317
Query: 240 LDFIGLGPTRGMSLGIMLQQAVLWNAVTL-GYWWWAIPPGLVIAILITGLYFINTGLDEV 298
L F+G S G + + V L WW A PG+ + + + Y++ L +
Sbjct: 318 LAFLGFSDPTTYSWG----RTIATGQVNLASAWWIATIPGVFLFLTVLSFYYVGESLRDA 373
Query: 299 FNPR 302
+PR
Sbjct: 374 MDPR 377
>sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJE
>gi|7442468|pir||B64987 hypothetical 38.1 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|405908|gb|AAA16378.1| (U00008) yejE [Escherichia
coli] >gi|1736844|dbj|BAA15987.1| (D90849) DciAC protein
[Escherichia coli] >gi|1788505|gb|AAC75240.1| (AE000307)
putative transport system permease protein [Escherichia
coli K12]
Length = 341
Score = 99.1 bits (243), Expect = 6e-20
Identities = 69/224 (30%), Positives = 115/224 (50%), Gaps = 10/224 (4%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
++LGTD+ G D+ A++ YG R S L G+ ++++G+L G + GY GG +D
Sbjct: 121 NWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFI 180
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
+ +PT+ L+I++++ + + ++ + L W VRA+ L +N ++I A+
Sbjct: 181 EVWSGMPTLFLIILLSSVVQPNFWWLLAITV-LFGWMSLVGVVRAEFLRTRNFDYIRAAQ 239
Query: 201 LSGLGDMKIIFDQIMPN--IISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGIML 257
G+ D II ++PN + + F+ FIL SI LDF+G G P SLG +L
Sbjct: 240 ALGVSDRSIILRHMLPNAMVATLTFLPFIL--CSSITTLTSLDFLGFGLPLGSPSLGELL 297
Query: 258 QQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNP 301
Q L W I L +AIL++ L FI + + F+P
Sbjct: 298 LQ----GKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDAFDP 337
>gb|AAC69844.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 276
Score = 97.1 bits (238), Expect = 2e-19
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 15/219 (6%)
Query: 81 HYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMIT 140
H LGTD +GRD++ ++ G RS+ + + ++G+ +G AGYK GWI+ +++
Sbjct: 50 HLLGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFI 109
Query: 141 NIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWT--ARAVRAQTLSLKNREFIHL 198
++ L IP ++I +A++ + +++I +T W R R+ S N+ +I +
Sbjct: 110 DVGLSIPEFIIMIALASFFQ---PSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKM 166
Query: 199 AKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG---PTRGMSLGI 255
A+L + I+ + P II + ++ ++ FG IL L FIGLG PT G
Sbjct: 167 AQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPT--PEWGA 224
Query: 256 MLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTG 294
MLQQ + I P VIAI I L F TG
Sbjct: 225 MLQQG---RDFISSHPIMLIAPASVIAITI--LIFNLTG 258
>sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMID
>gi|98017|pir||S11151 amiD protein - Streptococcus
pneumoniae >gi|47345|emb|CAA35215.1| (X17337) AmiD
protein [Streptococcus pneumoniae]
Length = 308
Score = 95.2 bits (233), Expect = 9e-19
Identities = 75/302 (24%), Positives = 133/302 (43%), Gaps = 30/302 (9%)
Query: 4 KSTLKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALP 63
KS K +K K V I++ + LI+ P+ + FD + + Y KP
Sbjct: 31 KSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVRYIKP------ 84
Query: 64 PMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGF 123
N H+ GTDS G+ ++ + +G R+S LI + A + ++G+ +G
Sbjct: 85 --------------NAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGG 130
Query: 124 IAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTAR 181
I G +D V+M + N++ IP + ++I++ + G G ++I + +T W A
Sbjct: 131 IWGISKS-VDRVMMEVYNVISNIPPLLIVIVLTYSI---GAGFWNLIFAMSVTTWIGIAF 186
Query: 182 AVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLD 241
+R Q L ++ E+ ++ G +KI+ IMP ++S + I L
Sbjct: 187 MIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFISYEAFLS 246
Query: 242 FIGLG-PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
F GLG P SLG ++ N T Y +W P + ++ L+ + L + +
Sbjct: 247 FFGLGLPITVPSLGRLISD-YSQNVTTNAYLFWI--PLTTLVLVSLSLFVVGQNLADASD 303
Query: 301 PR 302
PR
Sbjct: 304 PR 305
>emb|CAC05749.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 305
Score = 93.2 bits (228), Expect = 4e-18
Identities = 62/244 (25%), Positives = 108/244 (43%), Gaps = 9/244 (3%)
Query: 64 PMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGF 123
P+ D EG H G + G D+Y + YG R+S +GI A +LG ++G
Sbjct: 68 PLKCDLAKAQEGS-QPGHPFGFNGQGCDVYTRTVYGARTSVAVGILATLGVALLGSVLGG 126
Query: 124 IAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAV 183
+AG+ GG D VL IT+I IP + +++ + + + I L WP +R
Sbjct: 127 LAGFFGGGGDAVLSRITDIFFAIPVVLGGLVLLSVITSNTIWPVIGFIVLLGWPQISRIA 186
Query: 184 RAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFI 243
R ++ K +++ A+ G + +++ I PN ++ V +V + G I L F+
Sbjct: 187 RGSVITAKQNDYVQAARALGASNSRLLLRHIAPNAVAPVIVVATIALGTYISLEATLSFL 246
Query: 244 GLG---PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
G+G P+ + I + NA W P +AI + + + + +
Sbjct: 247 GVGLKPPSVSWGIDISSAAPYVRNAPHALLW-----PSGALAITVLAFIMLGDAVRDALD 301
Query: 301 PRLR 304
P+LR
Sbjct: 302 PKLR 305
>pir||D82170 peptide ABC transporter, permease protein VC1682 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656198|gb|AAF94832.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 295
Score = 92.8 bits (227), Expect = 5e-18
Identities = 75/285 (26%), Positives = 129/285 (44%), Gaps = 28/285 (9%)
Query: 19 GFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVN 78
G ++ +AL+ + P I P+D + + LPP + PEG V+
Sbjct: 32 GLWSLLFIALVTILSPWIAPYDPQMHSSVLL------------LPPS-----WEPEGTVD 74
Query: 79 VTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMM 138
++LGTD GRDI ++L G S + +AT++G IG +AG G + L
Sbjct: 75 --YFLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNH 132
Query: 139 ITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTARAVRAQTLSLKNREFI 196
I + ++ IP++ L II A+L G G +++ IGL P R+V + ++++
Sbjct: 133 ILDTVMSIPSLLLAIIFVAFL---GAGEFNILLAIGLALIPRFIRSVYVAVHNEVEKDYV 189
Query: 197 HLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLGI 255
A+L G + +++ I PNI+ + + +IL L F+GLG + G
Sbjct: 190 MAARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSPSTEWGA 249
Query: 256 MLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFN 300
ML +V + + W + PGL I + + + G + N
Sbjct: 250 MLGDSV--ELIYIAPWTVTL-PGLAIMFTVVVINLVGDGARQALN 291
>sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1361736|pir||F64208 oligopeptide transport system
permease dciAC homolog - Mycoplasma genitalium
>gi|1045755|gb|AAC71296.1| (U39688) oligopeptide ABC
transporter, permease protein (oppC) [Mycoplasma
genitalium]
Length = 376
Score = 86.6 bits (211), Expect = 3e-16
Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 49/341 (14%)
Query: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYP------KPG-- 58
+K +NK + F++++++ L+A+ PL +PF + P KPG
Sbjct: 38 IKRLFQNKWAILFFLLIVVIVLLAIIVPLTSPFSAVTPVSTNALAQNLPPRYLWHKPGDI 97
Query: 59 --------------------TPALP-----PMSSDTIY--GPEGIVNVTHY---LGTDSF 88
LP P++++ Y P + + +Y LGT+
Sbjct: 98 LVHKITARSIAEISQASGVLVGTLPSANSNPLATNVQYDIAPFQLQELRNYFPLLGTNGL 157
Query: 89 GRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAG-YKGGWIDEVLMMITNIMLVIP 147
G DI+ L + S I + +A + G + G +AG + G D ++ I I+ ++P
Sbjct: 158 GIDIWTLLWASVAKSLWIAVVVAIIAMVFGTIYGAVAGSFVGHMADNIMSRIIEIIDIVP 217
Query: 148 TMALLIIIAAYLPYRGVGI--ESVIIG---LTAWPWTARAVRAQTLSLKNREFIHLAKLS 202
++ +I++ A + GV +SV+I W W A R L K+ E+I AK
Sbjct: 218 SILWIIVLGATFRFGGVKQFDDSVVIFTLIFVFWTWPATTTRIYILKNKDTEYIQAAKTL 277
Query: 203 GLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQAVL 262
G ++IIF ++P + + +VF+ I L F+GL P + LG +L Q
Sbjct: 278 GAHQIRIIFVHMLPVVFGRLAVVFVSLIPAVIGYEASLVFLGLKPATDIGLGALLNQVTS 337
Query: 263 WNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
+ V L + + A+L L++ +PR+
Sbjct: 338 SDNVAL-----ILSSIVSFAVLTVAARTFANALNDAIDPRV 373
>pir||D81253 probable peptide ABC-transport system permease protein Cj1582c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968999|emb|CAB73570.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 264
Score = 86.6 bits (211), Expect = 3e-16
Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 39/293 (13%)
Query: 15 KFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPE 74
KF + +I + L ALF P + FD + S +
Sbjct: 5 KFLIILAPLIFLFLCALFAPFLALFDIL------------------------STHLENLH 40
Query: 75 GIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDE 134
N T+ LGTD GRD++++L + +R+S +IG+ L+ I L F+A +
Sbjct: 41 QAPNFTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARC---FFYV 97
Query: 135 VLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNRE 194
M I L +P L++ + + V + +I L W + AR + ++ L+N +
Sbjct: 98 FCMRILEFFLALPAFLLMMFFQSMIT-SDVFLMIFLIALIHWCFIARIIESELKRLENLD 156
Query: 195 FIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-----PTR 249
F + G + F ++P + + +F +FI +I L F GLG PT
Sbjct: 157 FYKANIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPT- 215
Query: 250 GMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPR 302
LG +L ++ AV +G WW + P L + +L L ++ L +++ R
Sbjct: 216 ---LGTLLSESS--KAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIR 263
>emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 308
Score = 85.4 bits (208), Expect = 8e-16
Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
N ++ GTD G+ ++ + YG R+S LI + A + +G+++G I G + D+V++
Sbjct: 85 NAEYWFGTDKNGQSLFDGVGYGARNSILISVIATLINITIGVVLGAIWGVSKAF-DKVMI 143
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIG--LTAWPWTARAVRAQTLSLKNREF 195
I NI+ IP+M ++I++ L G G ++I+ +T W A ++R Q L ++ E+
Sbjct: 144 EIYNIISNIPSMLIIIVLTYSL---GAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEY 200
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLG 254
++ G KI ++P ++S + + + + L F G+G PT SLG
Sbjct: 201 NLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVSSETFLSFFGIGLPTTTPSLG 260
Query: 255 IMLQQAVLWNAVTLGYWWWAIPPGLVIAILIT-GLYFINTGLDEVFNPR 302
++ N T Y +W IP LV IL++ LY + L + +PR
Sbjct: 261 RLIAN-YSSNLTTNAYLFW-IP--LVTLILVSLPLYIVGQNLADASDPR 305
>emb|CAA68075.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 424
Score = 84.7 bits (206), Expect = 1e-15
Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 10/225 (4%)
Query: 83 LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIG-FIAGYKGGWIDEVLMMITN 141
LGT S G DI+ Y + I + L I+G+ IG F+ Y G ID ++M +
Sbjct: 199 LGTSSIGYDIWTTAWYATWRAIKIALIVVILEAIIGISIGAFLGFYAGKLIDTIIMRVIE 258
Query: 142 IMLVIPTMALLIIIAAYLPYRGVGIESVIIGLT--AWPWTARAVRAQTLSLKNREFIHLA 199
I L PT+ +++ + + G S+++ LT WP R +++K+ EFI A
Sbjct: 259 IFLAPPTLIWILLFVSII---GANEWSLVLTLTIVGWPGFVGITRMFIITVKDEEFIIAA 315
Query: 200 KLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIG-LGPTRGMSLGIMLQ 258
K G+G + IF +P II + + G IL L F+G + +LG ML
Sbjct: 316 KAIGVGTPRRIFVHALPTIIGKIANNIVRSVPGVILWIASLAFLGFFKEKKDTNLGQMLI 375
Query: 259 QAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRL 303
+A V W A+P +++ L L FI G+ + +PR+
Sbjct: 376 EAS--QEVGSNIWIIALPT-IILLFLSLSLNFIALGVHDALDPRV 417
>gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 270
Score = 84.3 bits (205), Expect = 2e-15
Identities = 59/211 (27%), Positives = 106/211 (49%), Gaps = 9/211 (4%)
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
++ H+ GTD+ GRD++ + G +S IG+ A + ++ L++ +A +D ++
Sbjct: 46 DIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCSGVIALVMAAVARIHPR-LDLLVR 104
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTARAVRAQTLSLKNREF 195
+IT+ ML +P + LLI+I L G G VI + LT WP A +RA + ++
Sbjct: 105 LITDAMLAMPHLLLLILICFTL---GGGKSGVIAAVALTHWPRLALILRADAERVAQSDY 161
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-PTRGMSLG 254
+ L G G + P ++ +L F ++L + L F+G G SLG
Sbjct: 162 LTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLG 221
Query: 255 IMLQQAVLWNAVTLGYWWWAIPPGLVIAILI 285
++L A+ + ++ G WW + PGL++ L+
Sbjct: 222 LLLADALRF--ISHGNWWLVLFPGLMLFTLV 250
>sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|2146482|pir||S73941 oligopeptide transport system
permease protein amiD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674317|gb|AAB96263.1| (AE000058)
oligopeptide transport system permease protein AmiD
[Mycoplasma pneumoniae]
Length = 376
Score = 82.7 bits (201), Expect = 5e-15
Identities = 67/252 (26%), Positives = 114/252 (44%), Gaps = 18/252 (7%)
Query: 64 PMSSDTIYG--PEGIVNVTHY---LGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILG 118
P++++ Y P + + +Y LGT+ G DI+ L M S I I ++ + G
Sbjct: 128 PLATNVKYNIAPYQLAELKNYYPLLGTNGLGVDIWTLLWASMAKSLWIAIVVALVSMVFG 187
Query: 119 LLIGFIAG-YKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGI--ESVIIG--- 172
+ G IAG + G D ++ I I+ ++P++ +I++ A + GV +SV+I
Sbjct: 188 TIYGAIAGSFVGRAADNIMSRIIEIIDLVPSILWIIVLGATFRFGGVKQFDDSVVIFTLI 247
Query: 173 LTAWPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGG 232
W W A R L K+ E+I A+ G ++IIF ++P + + +VF+
Sbjct: 248 FVFWTWPAATTRIYILKNKDTEYIQAARTLGAKQIRIIFVHMLPVVTGRLAVVFVSLIPA 307
Query: 233 SILAAVGLDFIGLGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLV-IAILITGLYFI 291
I L F+GL P + LG +L Q + L I +V AIL
Sbjct: 308 VIGYEASLVFLGLKPATEVGLGALLNQVTSSGNIAL------ITSSIVSFAILTVSTRVF 361
Query: 292 NTGLDEVFNPRL 303
L++ +PR+
Sbjct: 362 ANALNDAIDPRV 373
>pir||B82876 oligopeptide transport system permease protein UU561 [imported] -
Ureaplasma urealyticum
>gi|6899567|gb|AAF30974.1|AE002154_10 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 332
Score = 80.4 bits (195), Expect = 3e-14
Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 30/274 (10%)
Query: 18 VGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIV 77
+G I+II+ ++A+ P T G+ T +P L Y +G +
Sbjct: 77 IGLAIIIILFILAIIIPFTT------------GSPTELRPNKRYLD-------YFTDGFI 117
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
GTD+ GRD++A L +G+R S I I + ++G+ +G + GY D+++
Sbjct: 118 -----FGTDNNGRDLWAMLWWGLRYSLGIAIIVTAIELVVGVTLGILMGY-FEMFDKIMT 171
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIH 197
I I+ +PT+ +L+I+ L G+ I + W A +R+Q ++ ++
Sbjct: 172 FIIKILTNVPTIIILMILTIILK-PSFGVMIFAISFSGWIAMANQMRSQVKRARSFLWVA 230
Query: 198 LAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIML 257
+K G KII + +P +I + + G+ILA L FIGL +LG ++
Sbjct: 231 ASKTLGTKAWKIILN-FLPILIPMMITQLVFSIPGAILAESSLAFIGLSLPNTPTLGNLI 289
Query: 258 QQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFI 291
+++ Y + + P ++ L+ + +
Sbjct: 290 ADG---SSIITLYPRFTLIPSFLLVCLVASIQLV 320
>emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi]
Length = 296
Score = 76.5 bits (185), Expect = 4e-13
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 34/282 (12%)
Query: 26 MALIALFGPLITPFDNMGYYPLKFGNTTYPKP------GTPALPPMSSDTIYGPEGIVNV 79
MA+I +G L+ +G FGNT P G LPP S YG
Sbjct: 28 MAMIGFYGFLLL----LGL--CLFGNTLAPYALDQQFLGYQLLPPSWSR--YG-----KC 74
Query: 80 THYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMI 139
+LGTD GRD+ ++L G +F + AT++G+LIG +AG G VL I
Sbjct: 75 RFFLGTDDLGRDLLSRLLSGAAPTFGPALLVTLAATLVGILIGMLAGVTHGLRSAVLNHI 134
Query: 140 TNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAW----PWTARAVRAQTLSLKNREF 195
+ +L IP++ L +++ A+ +G + L W P R + + +E+
Sbjct: 135 LDPLLSIPSLLLAMVVIAF-----IGPQLTHAMLAVWMALLPRMVRTIYSAVHDELEKEY 189
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGI 255
+ A+L G +++ ++PNI+ + F +IL L F+ L G L
Sbjct: 190 VTAARLDGASTRYLLWYAVVPNILPVLVSEVTRAFSIAILDIAALGFLNL----GAQLPT 245
Query: 256 MLQQAVLWNAVTLGYW--WWAIPPGLVIAILITGLYFINTGL 295
+L N++ L Y W + PG I + + + + G+
Sbjct: 246 TEWGVLLGNSLELVYAAPWTVMLPGTAITLSVLIVNLLGDGI 287
>pir||G81699 peptide ABC transporter, permease protein TC0473 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190514|gb|AAF39321.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 287
Score = 76.5 bits (185), Expect = 4e-13
Identities = 65/279 (23%), Positives = 123/279 (43%), Gaps = 37/279 (13%)
Query: 13 NKKFKVGFIIVIIMALIALFGPLITPFDNMGY--YPLKFGNTTYPKPGTPALPPMSSDTI 70
NK +G ++ ++ L A+F P + P + Y L+ N +P
Sbjct: 22 NKMLLLGCTVLTVLILSAIFLPSLYPDYEKTFPNYALQAPNKLFP--------------- 66
Query: 71 YGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGG 130
GTD+ GR + A+ G+R S LI ++A + LGLL +A G
Sbjct: 67 ------------FGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALAGGK 114
Query: 131 WIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPW--TARAVRAQTL 188
I + + IT I+ +P + ++I++ + GI +I+ +T W AR + Q L
Sbjct: 115 KIADFMSRITEILFSLPRIPVIILLLVIFNH---GILPLILAMTITGWIPIARIIYDQFL 171
Query: 189 SLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-P 247
L+N+EF+ A+ I+ ++PN + + I ++ + F+GLG
Sbjct: 172 LLENKEFVLSARALQASTFHILRKHLLPNTLGPIISTLIFTIPNAVYTEAFISFLGLGIQ 231
Query: 248 TRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILIT 286
SLG ++++ + +++ W + IP ++ I ++
Sbjct: 232 PPYASLGTLVKEGI--HSLDYHPWLFFIPSFFMVIISVS 268
>gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S77574
oligopeptide transport protein homolog ophC -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215733|gb|AAC44510.1| (AF242881) ophC
[Agrobacterium tumefaciens]
Length = 270
Score = 75.7 bits (183), Expect = 7e-13
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 3/188 (1%)
Query: 60 PALPPMSSDTIYGPE-GIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILG 118
P + P + I G + ++ LGTD GRD++++ +G R + L+ A +A ++G
Sbjct: 28 PLIAPYGLNEIVGTSWDPPSASNLLGTDMIGRDLFSRFVWGARITILVASLAVLIAFLIG 87
Query: 119 LLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPW 178
+G +AG + GW+D L ++++ +PT+ L +++ LP R V II L
Sbjct: 88 SGLGLLAGLRKGWLDMALSRFVDLVMSMPTLILAMMLLTILP-RSVAFIVAIIALVEATR 146
Query: 179 TARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAV 238
R R + ++ L G II +I+PN I+ + L+F S+L
Sbjct: 147 FFRLARLLAADIAALDYSG-RFLRGETTQWIIRHEILPNAITPLLAELALRFIFSVLFLS 205
Query: 239 GLDFIGLG 246
L F+GLG
Sbjct: 206 TLSFLGLG 213
>sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|628819|pir||S39587 peptide transport system permease
sapC - Salmonella typhimurium >gi|414210|emb|CAA52286.1|
(X74212) sapC [Salmonella typhimurium]
Length = 296
Score = 74.5 bits (180), Expect = 2e-12
Identities = 73/276 (26%), Positives = 122/276 (43%), Gaps = 33/276 (11%)
Query: 26 MALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMSSDTIYGPEGIVNVTHYLGT 85
+AL+ +FG I P+ + G LPP S YG V+ +LGT
Sbjct: 39 LALLCIFGGWIAPYGIDQQFL-----------GYQLLPPSWSR--YG-----EVSFFLGT 80
Query: 86 DSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITNIMLV 145
D GRD+ ++L G + AT+ GL++G +AG G VL I + +L
Sbjct: 81 DDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVLNHILDTLLS 140
Query: 146 IPTMALLIIIAAYL-PYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAKLSGL 204
IP++ L II+ A+ P+ + +V + L P R+V + +E++ A+L G
Sbjct: 141 IPSLLLAIIVVAFAGPHLSHAMFAVWLALL--PRMVRSVYSMVHDELEKEYVIAARLDGA 198
Query: 205 GDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG-----PTRGMSLGIMLQQ 259
+ I++ I+PNI + + +IL L F+ LG P G LG L+
Sbjct: 199 TTLNILWFAILPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALE- 257
Query: 260 AVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGL 295
+++ A W + PG I + + + + G+
Sbjct: 258 -LIYVAP-----WTVMLPGAAITLSVLLVNLLGDGI 287
>sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|7442408|pir||G64877 peptide transport system
permease protein sapC - Escherichia coli
>gi|1279402|emb|CAA65939.1| (X97282) SapC protein
[Escherichia coli] >gi|1742105|dbj|BAA14845.1| (D90766)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742114|dbj|BAA14853.1| (D90767)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742123|dbj|BAA14862.1| (D90768)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1787549|gb|AAC74374.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 296
Score = 73.4 bits (177), Expect = 3e-12
Identities = 67/245 (27%), Positives = 108/245 (43%), Gaps = 24/245 (9%)
Query: 58 GTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATIL 117
G LPP S YG V+ +LGTD GRD+ ++L G + ATI
Sbjct: 60 GYQLLPPSWSR--YG-----EVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATIC 112
Query: 118 GLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTA 175
GL++G AG G VL I + +L IP++ L II+ A + G + + + L
Sbjct: 113 GLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVA---FAGPSLSHAMFAVWLAL 169
Query: 176 WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSIL 235
P R++ + +E++ A+L G + I++ +MPNI + + +IL
Sbjct: 170 LPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRALSMAIL 229
Query: 236 AAVGLDFIGLG-----PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYF 290
L F+ LG P G LG L+ +++ A W + PG I I + +
Sbjct: 230 DIAALGFLDLGAQLPSPEWGAMLGDALE--LIYVAP-----WTVMLPGAAIMISVLLVNL 282
Query: 291 INTGL 295
+ G+
Sbjct: 283 LGDGV 287
>gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae]
Length = 296
Score = 73.4 bits (177), Expect = 3e-12
Identities = 67/245 (27%), Positives = 108/245 (43%), Gaps = 24/245 (9%)
Query: 58 GTPALPPMSSDTIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATIL 117
G LPP S YG V+ +LGTD GRD+ ++L G + ATI
Sbjct: 60 GYQLLPPSWSR--YG-----EVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATIC 112
Query: 118 GLLIGFIAGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTA 175
GL++G AG G VL I + +L IP++ L II+ A + G + + + L
Sbjct: 113 GLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVA---FAGPSLSHAMFAVWLAL 169
Query: 176 WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSIL 235
P R++ + +E++ A+L G + I++ +MPNI + + +IL
Sbjct: 170 LPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRALSMAIL 229
Query: 236 AAVGLDFIGLG-----PTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYF 290
L F+ LG P G LG L+ +++ A W + PG I I + +
Sbjct: 230 DIAALGFLDLGAQLPSPEWGAMLGDALE--LIYVAP-----WTVMLPGAAIMISVLLVNL 282
Query: 291 INTGL 295
+ G+
Sbjct: 283 LGDGV 287
>dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus]
Length = 271
Score = 73.0 bits (176), Expect = 4e-12
Identities = 54/212 (25%), Positives = 100/212 (46%), Gaps = 11/212 (5%)
Query: 78 NVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLM 137
N H+ GTD GRD++++ + S + A + + L++ IA W + ++
Sbjct: 44 NYLHWFGTDWLGRDMFSRTLKALMHSLSMTGIAIFFSASIALMLAIIANLNRRW-NMLID 102
Query: 138 MITNIMLVIPTMALLIIIAAYLPYRGVGIESVI--IGLTAWPWTARAVRAQTLSLKNREF 195
I + L +P++ LL+I+ G G + V+ I L+ WP R +++ SL ++
Sbjct: 103 FIVDCALSLPSLLLLMILTVSF---GSGSQGVMFAIALSHWPKLTRLCKSEIQSLMCSDY 159
Query: 196 IHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLG--PTRGMSL 253
+ A G + +I P+++ +L +L + L F+G G PTR S+
Sbjct: 160 MSHALNFGHKKIHVILQHAFPHLLPQWMTGMLLLLPHGLLHSAALSFLGFGSDPTRA-SM 218
Query: 254 GIMLQQAVLWNAVTLGYWWWAIPPGLVIAILI 285
G + +A + + G WW A+ PGL++ I
Sbjct: 219 GKIFDEANSY--LLTGQWWLAVLPGLMLVFTI 248
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.146 0.451
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112876941
Number of Sequences: 2977
Number of extensions: 4940760
Number of successful extensions: 19454
Number of sequences better than 1.0e-10: 132
Number of HSP's better than 0.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 19108
Number of HSP's gapped (non-prelim): 152
length of query: 306
length of database: 189,106,746
effective HSP length: 49
effective length of query: 257
effective length of database: 159,780,883
effective search space: 41063686931
effective search space used: 41063686931
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)