BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2372 (PAB2372) DE:Hypothetical protein
         (157 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75054 hypothetical protein PAB2372 - Pyrococcus abyssi (st...   317  3e-86
pir||F71106 hypothetical protein PH0623 - Pyrococcus horikoshii ...   126  1e-28

>pir||H75054 hypothetical protein PAB2372 - Pyrococcus abyssi (strain Orsay)
           >gi|5458846|emb|CAB50333.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 157
           
 Score =  317 bits (805), Expect = 3e-86
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MVSMDVKRELFKKILENIPRIREVISYGIPHLIGEITEDDVCLDVLTYEGREVEIVIKES 60
           MVSMDVKRELFKKILENIPRIREVISYGIPHLIGEITEDDVCLDVLTYEGREVEIVIKES
Sbjct: 1   MVSMDVKRELFKKILENIPRIREVISYGIPHLIGEITEDDVCLDVLTYEGREVEIVIKES 60

Query: 61  SRTCFIIPIRGEEDLKAYRLFARIISHIQEDKRKLNPGMKIKGDILGTLKKFGHEILWMS 120
           SRTCFIIPIRGEEDLKAYRLFARIISHIQEDKRKLNPGMKIKGDILGTLKKFGHEILWMS
Sbjct: 61  SRTCFIIPIRGEEDLKAYRLFARIISHIQEDKRKLNPGMKIKGDILGTLKKFGHEILWMS 120

Query: 121 DWQGSVELITICKGKRYRLLLRRDNIDEYTLTSILEL 157
           DWQGSVELITICKGKRYRLLLRRDNIDEYTLTSILEL
Sbjct: 121 DWQGSVELITICKGKRYRLLLRRDNIDEYTLTSILEL 157


>pir||F71106 hypothetical protein PH0623 - Pyrococcus horikoshii
           >gi|3257029|dbj|BAA29712.1| (AP000003) 153aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 153
           
 Score =  126 bits (314), Expect = 1e-28
 Identities = 59/158 (37%), Positives = 107/158 (67%), Gaps = 6/158 (3%)

Query: 1   MVSMDVKRELFKKILENIPRIREVISYGIPHLIGEITEDD-VCLDVLTYEGREVEIVIKE 59
           M++  +KR LFK+I + IP I++ ++YGIPH+IGEIT+ + + L ++TY  +E ++++ +
Sbjct: 1   MITATIKRNLFKEISKLIPEIKDSLNYGIPHIIGEITQGEGIFLQIVTYADKEQQLIVND 60

Query: 60  SSRTCFIIPIRGEEDLKAYRLFARIISHIQEDKRKLNPGMKIKGDILGTLKKFGHEILWM 119
            S+ CFI+P++   + KAY+LF  +++ I+   R L PG  I GD+   L+K G++++W+
Sbjct: 61  ESKICFILPVK---ETKAYKLFIDVLNLIEN--RGLKPGSTIMGDLKSRLEKLGYKVVWI 115

Query: 120 SDWQGSVELITICKGKRYRLLLRRDNIDEYTLTSILEL 157
           +     VE+IT+  G+RYR+     +++E+ L SI E+
Sbjct: 116 TPMHDFVEVITVKGGERYRMKFEELHLNEFKLVSINEI 153


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.144    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57937919
Number of Sequences: 2977
Number of extensions: 2322549
Number of successful extensions: 4378
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4375
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 189,106,746
effective HSP length: 51
effective length of query: 106
effective length of database: 158,583,909
effective search space: 16809894354
effective search space used: 16809894354
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)