BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2380 (PAB2380) DE:Hypothetical protein
         (344 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75057 hypothetical protein PAB2380 - Pyrococcus abyssi (st...   650  0.0
pir||D71174 hypothetical protein PH0592 - Pyrococcus horikoshii ...   355  4e-97

>pir||G75057 hypothetical protein PAB2380 - Pyrococcus abyssi (strain Orsay)
           >gi|5458869|emb|CAB50356.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 344
           
 Score =  650 bits (1658), Expect = 0.0
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MEIDEIIELVRRGSIEDAIDRIAKLKSPLDKVVALARVGEMLRNEDLLEDAIYVLEKHVK 60
           MEIDEIIELVRRGSIEDAIDRIAKLKSPLDKVVALARVGEMLRNEDLLEDAIYVLEKHVK
Sbjct: 1   MEIDEIIELVRRGSIEDAIDRIAKLKSPLDKVVALARVGEMLRNEDLLEDAIYVLEKHVK 60

Query: 61  NPGDKVTGYSEVASSYSKLGKLDLAVEYFKRAIELLPELKDYEAGILATSLGAKLALSGL 120
           NPGDKVTGYSEVASSYSKLGKLDLAVEYFKRAIELLPELKDYEAGILATSLGAKLALSGL
Sbjct: 61  NPGDKVTGYSEVASSYSKLGKLDLAVEYFKRAIELLPELKDYEAGILATSLGAKLALSGL 120

Query: 121 PKLAMEVFDFALDSIVRSEISVIEKTDLIFQLADIMESVGDELHSKYALKFYERAYEIFD 180
           PKLAMEVFDFALDSIVRSEISVIEKTDLIFQLADIMESVGDELHSKYALKFYERAYEIFD
Sbjct: 121 PKLAMEVFDFALDSIVRSEISVIEKTDLIFQLADIMESVGDELHSKYALKFYERAYEIFD 180

Query: 181 YLKVGERARSLEKKIELAKAMKVEGTPEVRKLALAGMFKEAISLLSSLSGKDKVIGLFEL 240
           YLKVGERARSLEKKIELAKAMKVEGTPEVRKLALAGMFKEAISLLSSLSGKDKVIGLFEL
Sbjct: 181 YLKVGERARSLEKKIELAKAMKVEGTPEVRKLALAGMFKEAISLLSSLSGKDKVIGLFEL 240

Query: 241 ALWAKKLESYEAFEISDLALKELKSLSLDDDSLERIVNILLEMELFDTALEVSLSIKDQG 300
           ALWAKKLESYEAFEISDLALKELKSLSLDDDSLERIVNILLEMELFDTALEVSLSIKDQG
Sbjct: 241 ALWAKKLESYEAFEISDLALKELKSLSLDDDSLERIVNILLEMELFDTALEVSLSIKDQG 300

Query: 301 KRDVSLAKVALSLIKIGERERVVGDILPRIGSEYIKEEIVKKLR 344
           KRDVSLAKVALSLIKIGERERVVGDILPRIGSEYIKEEIVKKLR
Sbjct: 301 KRDVSLAKVALSLIKIGERERVVGDILPRIGSEYIKEEIVKKLR 344


>pir||D71174 hypothetical protein PH0592 - Pyrococcus horikoshii
           >gi|3256998|dbj|BAA29681.1| (AP000002) 348aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 348
           
 Score =  355 bits (901), Expect = 4e-97
 Identities = 180/341 (52%), Positives = 258/341 (74%)

Query: 1   MEIDEIIELVRRGSIEDAIDRIAKLKSPLDKVVALARVGEMLRNEDLLEDAIYVLEKHVK 60
           MEIDEII L R+G I+ AI+RI+KLK PLD+V+AL RVGE++++  +L+DA+Y++E  +K
Sbjct: 1   MEIDEIILLARKGFIDQAIERISKLKHPLDRVIALTRVGEVVKDLSILDDALYLVEHSLK 60

Query: 61  NPGDKVTGYSEVASSYSKLGKLDLAVEYFKRAIELLPELKDYEAGILATSLGAKLALSGL 120
           +  DK+ GYSE+  SYS+LG  + +   F+ AI LL +L++YEAG++A SLGAKLAL+G 
Sbjct: 61  SVEDKIFGYSELGVSYSRLGDKESSASCFEEAINLLGKLEEYEAGVIAISLGAKLALAGF 120

Query: 121 PKLAMEVFDFALDSIVRSEISVIEKTDLIFQLADIMESVGDELHSKYALKFYERAYEIFD 180
            + A+E+FDFA DS++ SEI + EK +LI QLAD ME+VGDEL S  AL+FYERAY IFD
Sbjct: 121 HRNALEMFDFAFDSLMESEIKLSEKVELITQLADTMETVGDELPSAIALEFYERAYYIFD 180

Query: 181 YLKVGERARSLEKKIELAKAMKVEGTPEVRKLALAGMFKEAISLLSSLSGKDKVIGLFEL 240
            L++G+R+ +LEKKI ++KA+KV G P VRKL L G F++A+ LL +L G +++IG+ EL
Sbjct: 181 NLRIGDRSSNLEKKIRVSKALKVAGLPGVRKLVLEGRFEDALHLLDNLKGGERIIGILEL 240

Query: 241 ALWAKKLESYEAFEISDLALKELKSLSLDDDSLERIVNILLEMELFDTALEVSLSIKDQG 300
           +LWAK++ESYE F++ D+AL+E+K+ +L DD   +IVN+L ++ELF+ ALEV  SIK+  
Sbjct: 241 SLWAKEMESYERFKLIDIALEEIKTANLSDDEKVKIVNLLSKLELFENALEVGKSIKEGE 300

Query: 301 KRDVSLAKVALSLIKIGERERVVGDILPRIGSEYIKEEIVK 341
            RD +L  +   LIK GE E V   +LP I S+ +KE++ +
Sbjct: 301 IRDKALYLLGKELIKSGEFEYVKTKLLPLIRSQDLKEDLAR 341


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.356 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106578509
Number of Sequences: 2977
Number of extensions: 4069709
Number of successful extensions: 13907
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13904
Number of HSP's gapped (non-prelim): 2
length of query: 344
length of database: 189,106,746
effective HSP length: 63
effective length of query: 281
effective length of database: 151,402,065
effective search space: 42543980265
effective search space used: 42543980265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)