BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2381 (PAB2381) DE:Hypothetical protein
(280 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75057 hypothetical protein PAB2381 - Pyrococcus abyssi (st... 550 e-156
pir||E71174 hypothetical protein PH0593 - Pyrococcus horikoshii ... 411 e-114
gi|11498394 conserved hypothetical protein [Archaeoglobus fulgid... 169 2e-41
pir||F72219 conserved hypothetical protein - Thermotoga maritima... 150 1e-35
emb|CAC12612.1| (AL445067) conserved hypothetical membrane prote... 135 5e-31
pir||B83194 hypothetical protein PA3605 [imported] - Pseudomonas... 122 4e-27
pir||F75278 conserved hypothetical protein - Deinococcus radiodu... 119 3e-26
pir||F72342 conserved hypothetical protein - Thermotoga maritima... 118 1e-25
pir||B83512 hypothetical protein PA1060 [imported] - Pseudomonas... 90 4e-17
sp|O34416|YOAV_BACSU HYPOTHETICAL 33.0 KD PROTEIN IN PELB-PENP I... 86 4e-16
gi|11498121 conserved hypothetical protein [Archaeoglobus fulgid... 80 4e-14
sp|P96680|YDFC_BACSU HYPOTHETICAL 33.6 KD PROTEIN IN CSPC-NAP IN... 79 5e-14
pir||A83049 hypothetical protein PA4779 [imported] - Pseudomonas... 76 3e-13
dbj|BAB04109.1| (AP001508) unknown conserved protein [Bacillus h... 72 9e-12
pir||B82172 conserved hypothetical protein VC1656 [imported] - V... 71 2e-11
sp|P31437|YICL_ECOLI HYPOTHETICAL 33.1 KD PROTEIN IN SELC-NLPA I... 69 8e-11
dbj|BAB05460.1| (AP001513) unknown conserved protein [Bacillus h... 68 1e-10
>pir||F75057 hypothetical protein PAB2381 - Pyrococcus abyssi (strain Orsay)
>gi|5458868|emb|CAB50355.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 280
Score = 550 bits (1401), Expect = e-156
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MDETRKAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTS 60
MDETRKAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTS
Sbjct: 1 MDETRKAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTS 60
Query: 61 QALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWV 120
QALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWV
Sbjct: 61 QALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWV 120
Query: 121 ALGLALLGTYLISNVGNFNYGDMLTVLAALSFAFQIVLVEYFGNLGIGLAFWQVFWNSMF 180
ALGLALLGTYLISNVGNFNYGDMLTVLAALSFAFQIVLVEYFGNLGIGLAFWQVFWNSMF
Sbjct: 121 ALGLALLGTYLISNVGNFNYGDMLTVLAALSFAFQIVLVEYFGNLGIGLAFWQVFWNSMF 180
Query: 181 SLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPVF 240
SLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPVF
Sbjct: 181 SLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPVF 240
Query: 241 GHFFSFLILGEVLSWKGYIGALLILIAVWLEISRENLISD 280
GHFFSFLILGEVLSWKGYIGALLILIAVWLEISRENLISD
Sbjct: 241 GHFFSFLILGEVLSWKGYIGALLILIAVWLEISRENLISD 280
>pir||E71174 hypothetical protein PH0593 - Pyrococcus horikoshii
>gi|3256999|dbj|BAA29682.1| (AP000002) 284aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 284
Score = 411 bits (1046), Expect = e-114
Identities = 193/281 (68%), Positives = 243/281 (85%), Gaps = 1/281 (0%)
Query: 1 MDETRKAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTS 60
MDETRKAELIL+ +SAIWG+TFPVMK+GI+D+PP++F+AFRF +AS+++ I L+ I
Sbjct: 4 MDETRKAELILLGLSAIWGTTFPVMKIGIKDFPPVSFIAFRFFLASIILAIVLKDKITKD 63
Query: 61 QALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWV 120
Q PG L+GLSLF GF FQVVGLKYTT+SNSAFITSLYMVFTPFVA LLK+++ +D +
Sbjct: 64 QIFPGFLIGLSLFAGFGFQVVGLKYTTASNSAFITSLYMVFTPFVAFALLKSKITRVDAL 123
Query: 121 ALGLALLGTYLISNVG-NFNYGDMLTVLAALSFAFQIVLVEYFGNLGIGLAFWQVFWNSM 179
AL +A+LGTYLIS N +YGD+LT+LAALSFAFQIVL+EY+ +LG+GLAFWQ+FWN +
Sbjct: 124 ALAIAVLGTYLISGASLNLSYGDLLTILAALSFAFQIVLIEYYKDLGLGLAFWQIFWNFI 183
Query: 180 FSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPV 239
FSL Y+ FE LP+P+EGST+FAI+YT I+ATA+AF QVKYQPKI+SHRAA++YSAEPV
Sbjct: 184 FSLVYSIYFESLPLPKEGSTVFAILYTGIVATALAFLGQVKYQPKIESHRAAVLYSAEPV 243
Query: 240 FGHFFSFLILGEVLSWKGYIGALLILIAVWLEISRENLISD 280
FG+FFSFLILGE+L ++GY+GA LIL+A+WLEISRE LI +
Sbjct: 244 FGYFFSFLILGEILPFEGYVGAFLILVAIWLEISREKLIKE 284
>gi|11498394 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136575|sp|O29470|Y788_ARCFU HYPOTHETICAL PROTEIN
AF0788 >gi|7483054|pir||D69348 conserved hypothetical
protein AF0788 - Archaeoglobus fulgidus
>gi|2649820|gb|AAB90451.1| (AE001050) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 308
Score = 169 bits (425), Expect = 2e-41
Identities = 102/265 (38%), Positives = 146/265 (54%), Gaps = 9/265 (3%)
Query: 7 AELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRK-DIKTSQALPG 65
A+L L L++ IWGSTFPV+K+ ++ P F RF IA L L FL+ D K G
Sbjct: 43 ADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-----G 97
Query: 66 LLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWVALGLA 125
+G++ FLG++FQ VGL YTT++N+ FITS Y+V P ++ L+ K D + LA
Sbjct: 98 FKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVSGVLLA 157
Query: 126 LLGTYLISNVGNFNYGDMLTVLAALSFAFQIVLVEYFGNLG--IGLAFWQVFWNSMFSLA 183
+G Y +S FN GD+L + AL F +I ++ ++ L LAFWQ F + S
Sbjct: 158 FVGFYFLSGYSGFNIGDILMLFCALFFGAEIAMISHYSRLSNPTMLAFWQSFAIFILSAP 217
Query: 184 YAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPVFGHF 243
+ A+F + + ++ TA AT +A +Q Q S AA+I S E VF H
Sbjct: 218 F-AVFTTTKFEINTTVILCLLITAFFATFVAKMLQNWLQSYTKSSDAAVILSLEGVFAHL 276
Query: 244 FSFLILGEVLSWKGYIGALLILIAV 268
FS +L E+L+ Y GA LIL+AV
Sbjct: 277 FSVAVLAEILTPVQYFGAFLILLAV 301
>pir||F72219 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982299|gb|AAD36788.1|AE001811_8 (AE001811)
conserved hypothetical protein [Thermotoga maritima]
Length = 288
Score = 150 bits (376), Expect = 1e-35
Identities = 96/282 (34%), Positives = 158/282 (55%), Gaps = 16/282 (5%)
Query: 6 KAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLM-LIFLRKDIKTSQALP 64
KA L+ ++ IWGSTFP+ K+ + P ++A RF IA+L+ +F + ++K
Sbjct: 3 KALFSLLFVAFIWGSTFPIQKIVLVGVSPTFYIAVRFFIAALVSYFLFGKGNVKY----- 57
Query: 65 GLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWVALGL 124
G ++G L + ++ Q GL TTS+ S FITS+Y+VF P A LL + + V+
Sbjct: 58 GSILGTLLGIAYTTQTWGLTITTSTKSGFITSMYIVFVPVFAYLLEREIPTIFQIVSFFA 117
Query: 125 ALLGTYLISN-VGNFNYGDMLTVLAALSFAFQIVLVEYFGNL--GIGLAFWQVFWNSMFS 181
A LG Y+IS + +FN+GD LT++ A+SFA +VL+ F + L F Q + +
Sbjct: 118 ASLGLYMISGGIKDFNFGDFLTLICAVSFALHVVLITMFSKRVKEVDLLFPQFLVVGILN 177
Query: 182 LAYAAIFEG--LPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPV 239
L ++ +P GS +F TA+ AT +A +Q KYQ + ++ +AI++ EPV
Sbjct: 178 LILNFFWKNWNFTLPALGSAVF----TALAATILAIYLQAKYQKALGNNVSAIVFLGEPV 233
Query: 240 FGHFFSFLILGEVLSWKGYIGALLILIA-VWLEISRENLISD 280
F S+ +LGE ++ K +GA L+LI+ ++ + R ++ D
Sbjct: 234 FAAVVSYFMLGETMAGKQLLGAALLLISMLFSSLERVKIVRD 275
>emb|CAC12612.1| (AL445067) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 285
Score = 135 bits (337), Expect = 5e-31
Identities = 89/268 (33%), Positives = 149/268 (55%), Gaps = 10/268 (3%)
Query: 10 ILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFL-RKDIKTSQALP--GL 66
+LI ++ IWG TFP++K P++F+A RF +ASL+ L F+ RK I+T++ G+
Sbjct: 11 LLIFVTFIWGVTFPMIKDVFAYLSPVSFLAVRFAVASLIFLPFVYRKLIQTNRNTIKYGV 70
Query: 67 LVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWVALGLAL 126
+ G+ LF+ + Q VGLKYT + S IT +Y+VF P ++ L LK RV I+ + A
Sbjct: 71 VAGIFLFIAYYLQTVGLKYTEPALSGTITGIYVVFVPIISYLYLKRRVMRIEVYSSVFAF 130
Query: 127 LGTYLISNVGNFNY----GDMLTVLAALSFAFQIVLV-EYFGNLG-IGLAFWQVFWNSMF 180
LG L+S G N GD+LT +AA+ +A Q+V + +Y N+ + +F Q+ +
Sbjct: 131 LGLVLMSYSGLHNLAIESGDILTFIAAIFYAMQLVYISKYASNVDPLVFSFLQIVVVGVL 190
Query: 181 SLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSAEPVF 240
SLA+ + P+ LF I++TAI AT +A V V +++ + +I EP+F
Sbjct: 191 SLAFMPT-DMYPIVFSYYALFVIVFTAIFATFLATYVYVSALSRMNVTKVGVILIGEPIF 249
Query: 241 GHFFSFLILGEVLSWKGYIGALLILIAV 268
S + E + +G ++++++
Sbjct: 250 ADITSIFLFNEPVGPIEILGICIMIVSI 277
>pir||B83194 hypothetical protein PA3605 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949762|gb|AAG06993.1|AE004781_1
(AE004781) hypothetical protein [Pseudomonas aeruginosa]
Length = 308
Score = 122 bits (304), Expect = 4e-27
Identities = 84/272 (30%), Positives = 136/272 (49%), Gaps = 13/272 (4%)
Query: 6 KAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFL----RKD----I 57
+A++++++ + IWG +F +LG++ P + RF++ +L+++ L R+D
Sbjct: 18 RADVLMLITAMIWGVSFVAQRLGMDAIGPFLYTGLRFVLGALVLVPLLMLRSRRDGAQPF 77
Query: 58 KTSQALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLI 117
Q L G+++G++L G + Q VGL +T+ +NS FIT LY++ P + LL R
Sbjct: 78 NRGQLLAGVILGVALTTGINLQQVGLLFTSVTNSGFITGLYVIVVPLLG-LLFGQRTGAG 136
Query: 118 DWVALGLALLGTYLISNVGNFNY--GDMLTVLAALSFAFQIVLVEYFGNL--GIGLAFWQ 173
W+ LA+LG L+S F GD L + A+ + ++LV F + I LAF Q
Sbjct: 137 TWLGASLAVLGMALLSIGPGFQVASGDWLQLAGAVVWGAHVLLVGLFASRYDPIRLAFLQ 196
Query: 174 VFWNSMFSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAII 233
+ SL A +FE + A++Y ++ F +QV Q + AAII
Sbjct: 197 FATCAAVSLLLALVFEEIHWDAIVQAGPALLYGGLLGVGTGFTLQVVAQKHAIASHAAII 256
Query: 234 YSAEPVFGHFFSFLILGEVLSWKGYIGALLIL 265
S E VF L L E L +GY G L+L
Sbjct: 257 LSLEAVFAAIAGALFLAETLHLRGYFGCALML 288
>pir||F75278 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460210|gb|AAF11939.1|AE002070_1 (AE002070)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 304
Score = 119 bits (296), Expect = 3e-26
Identities = 85/277 (30%), Positives = 147/277 (52%), Gaps = 16/277 (5%)
Query: 9 LILILISAIWGSTFPVMK-LGIEDYPPITFVAFRFLIASLLML------------IFLRK 55
L+L+L++AIWGSTF V+K LG PP+ +A+RF I +L++L + + +
Sbjct: 9 LLLLLVTAIWGSTFAVVKELGALLAPPV-LLAWRFSIGALVLLPLAALRRTPAPTVTVTQ 67
Query: 56 DIKTSQALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVK 115
TS G+++GL L G+ Q + L+ TT++ +AF T+L +V P L+ + R+
Sbjct: 68 ADGTSLWSDGMVLGLWLIAGYGTQTIALQTTTANRAAFFTALSVVLVPVWLTLVQRRRMP 127
Query: 116 LIDWVALGLALLGTYLIS-NVGNFNYGDMLTVLAALSFAFQIVLVEYFGNLGIGLAFWQV 174
+ W AL LA+ G L+S G + GD + A+++A I+ +E + L F
Sbjct: 128 AVLWAALPLAVAGLALLSWEGGAWVSGDAWALACAVTYAGFILALEKLASRHAALPFTLA 187
Query: 175 FWNSMFSLAYA-AIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAII 233
S+ +A+ A+ G P+ + + Y ++ATA +Q Q + + A++I
Sbjct: 188 QVLSVALVAWGWALLSGAPLWPPQAAWAPLFYLGVVATAGTTLLQTLGQRHVSAAEASLI 247
Query: 234 YSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWL 270
Y+ EPV FSF ++GE + +G +G L+++A L
Sbjct: 248 YALEPVSAALFSFALIGERVGARGALGGALVVLATVL 284
>pir||F72342 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981253|gb|AAD35810.1|AE001743_12 (AE001743)
conserved hypothetical protein [Thermotoga maritima]
Length = 276
Score = 118 bits (292), Expect = 1e-25
Identities = 81/274 (29%), Positives = 135/274 (48%), Gaps = 24/274 (8%)
Query: 6 KAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTSQALPG 65
KA L+L + + GSTFP+ KL + P + RF A+LL L + + G
Sbjct: 6 KALAFLVLTAVLQGSTFPLQKLVLGGVSPFVYNTVRFGSAALLSLFVFGP----GRFVKG 61
Query: 66 LLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWVALGLA 125
L+GL L + FQ+ GLK+T++ S FI S ++ P A LL + +++ I +++
Sbjct: 62 FLLGLVLCGAYIFQLWGLKFTSAVKSGFIVSSFVFLVPLFAFLLEREKLRKIHFISFTSG 121
Query: 126 LLGTYLISN-VGNFNYGDMLTVLAALSFAFQIVLVEYFGNLGI--GLAFWQVFW----NS 178
LG YL++ V G++ A+ FA +VL+ F + FWQ N
Sbjct: 122 FLGLYLLTGGVSQITLGNLFQFFCAVLFALHVVLITRFSRSEEEKNMLFWQFVTVGAVNF 181
Query: 179 MFSLAYAAIFEGLPMPREGSTLFAI---IYTAIMATAIAFAVQVKYQPKIDSHRAAIIYS 235
+F L R L AI IY+ + AT + Q++YQ ++ ++ A++Y
Sbjct: 182 LFGLG----------ERWHLNLEAISVGIYSGVFATTLGILWQMRYQKEVGNNTTALVYM 231
Query: 236 AEPVFGHFFSFLILGEVLSWKGYIGALLILIAVW 269
+P SFL+LGE +S+ +G +L+L+A++
Sbjct: 232 TQPFVSLVLSFLLLGERMSFLQLLGGILVLVALF 265
>pir||B83512 hypothetical protein PA1060 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946975|gb|AAG04449.1|AE004538_1
(AE004538) hypothetical protein [Pseudomonas aeruginosa]
Length = 301
Score = 89.7 bits (219), Expect = 4e-17
Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 16/273 (5%)
Query: 11 LILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTSQALPG---LL 67
LIL A+WGS++ V+K+ + PP+ + R + SL+ L+ R + PG L
Sbjct: 12 LILAMALWGSSYVVLKVAFRELPPLWVIFGRMALGSLVFLVAWRWRGRIDYR-PGDWKYL 70
Query: 68 VGLSLF---LGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWVALGL 124
+GL++ L F + L+YT+++ + IT+L + A LLL R+ + W+ GL
Sbjct: 71 LGLAVCEPCLYFLCESFALQYTSAAQAGMITALLPLLVAVGAWLLLHERIGRMTWIGFGL 130
Query: 125 ALLGTYLISNVGNFN-------YGDMLTVLAALSFAFQIVLVEYFG--NLGIGLAFWQVF 175
A+LG+ +S G + G+ +LA L +L+++ L Q F
Sbjct: 131 AVLGSIWLSLAGEPDLHAPQPLLGNFFELLAMLCATGYTLLLKHLSARYSAFALTAMQAF 190
Query: 176 WNSMFSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYS 235
++F L A LP + A++Y ++ T A+ + ++ + +A+ +
Sbjct: 191 VGTLFFLPLALASADLPSQPSALGIQAVVYLGVVVTVGAYGLYNFGVGRLPASQASGFIN 250
Query: 236 AEPVFGHFFSFLILGEVLSWKGYIGALLILIAV 268
PVF F+ L LGE L+ + A L+ I V
Sbjct: 251 LIPVFTLVFAALFLGETLNGPQMLAAGLVFIGV 283
>sp|O34416|YOAV_BACSU HYPOTHETICAL 33.0 KD PROTEIN IN PELB-PENP INTERGENIC REGION
>gi|7474661|pir||G69897 conserved hypothetical protein
yoaV - Bacillus subtilis >gi|2619001|gb|AAB84425.1|
(AF027868) YoaV [Bacillus subtilis]
>gi|2634270|emb|CAB13769.1| (Z99114) similar to
hypothetical proteins [Bacillus subtilis]
Length = 292
Score = 86.2 bits (210), Expect = 4e-16
Identities = 64/280 (22%), Positives = 130/280 (45%), Gaps = 15/280 (5%)
Query: 6 KAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASL---LMLIFLRKDIKTSQA 62
K L +I ++ IWG T+ MK+GI D PP+ F R I ++ L+L RK + +
Sbjct: 3 KVMLGIISVTLIWGYTWVAMKVGIHDIPPLLFSGLRLFIGAVPLFLILFIQRKKLSIQKE 62
Query: 63 LPGLLVGLSLFLGFSFQVV---GLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDW 119
+ +SL +G + + G+++ S ++ + +F ++ L ++ +
Sbjct: 63 HLKSYIIMSLLMGLGYMGILTYGMQFVDSGKTSVLVYTMPIFVTVISHFSLNEKMNVYKT 122
Query: 120 VALGLALLGTYLISNVGNFN------YGDMLTVLAALSFAFQIVLVE-YFGNLG-IGLAF 171
+ L L G I N +G++ ++AALS+ V + F ++ I +
Sbjct: 123 MGLVCGLFGLLFIFGKEMLNIDQSALFGELCVLVAALSWGIANVFSKLQFKHIDIIHMNA 182
Query: 172 WQVFWNSMFSLAYAAIFEGLPMPR-EGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRA 230
W + ++ L ++ IFE +P ++++++ +++T F V +I + +A
Sbjct: 183 WHLMMGAVMLLVFSFIFEAVPSAEWTYQAVWSLLFNGLLSTGFTFVVWFWVLNQIQASKA 242
Query: 231 AIIYSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWL 270
++ PV FF +L L E ++ +GALLI +++
Sbjct: 243 SMALMFVPVLALFFGWLQLHEQITINIILGALLICCGIFM 282
>gi|11498121 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136536|sp|O29740|Y510_ARCFU HYPOTHETICAL PROTEIN
AF0510 >gi|7483020|pir||F69313 conserved hypothetical
protein AF0510 - Archaeoglobus fulgidus
>gi|2650107|gb|AAB90720.1| (AE001068) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 289
Score = 79.6 bits (193), Expect = 4e-14
Identities = 68/291 (23%), Positives = 132/291 (44%), Gaps = 26/291 (8%)
Query: 6 KAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLML--IFLRKDIKTSQAL 63
K L+L L IW +F +K+G+++ P +RFL+AS L++ +F ++ +
Sbjct: 4 KTHLLLALTMLIWAGSFIFIKIGLKELDPFNLAFYRFLLASPLLMAWVFWKRGLAKPSGS 63
Query: 64 PGLLVGLSLFLG----FSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDW 119
L + + G ++FQ + LKYTT++N++ + + VF ++ + + +
Sbjct: 64 EWLHLSVLALSGVTLLYAFQFLALKYTTATNASILINTSAVFVALWGLVKGEANPRKLAG 123
Query: 120 VALGLALLGTYLISNVGNFN-------YGDMLTVLAALSFAFQIV-----LVEYFGNLGI 167
V L A G LI + G +GD+L ++ +A V L++Y
Sbjct: 124 VFLSFA--GVVLIVSKGTLEFFSSKTIFGDVLMIVDGFLWAVYTVLGSKMLLKYDHETLT 181
Query: 168 GLAFWQVFWNSMFSLAYAAIFEGL--PMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKI 225
AF ++F + + A+ G P+ T+ A++Y +I+ + A+ V
Sbjct: 182 AYAF---ALGTIFLIPF-ALMSGFANPVTFNPETVAALLYLSILCSVFAYVVWYYALTNA 237
Query: 226 DSHRAAIIYSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWLEISREN 276
DS A+ P+F F+F L E + IG ++ + V+L ++++
Sbjct: 238 DSTSVAVYVYLVPLFTAIFAFYALNEKPDFFTAIGGIITIAGVYLTTAKQH 288
>sp|P96680|YDFC_BACSU HYPOTHETICAL 33.6 KD PROTEIN IN CSPC-NAP INTERGENIC REGION
>gi|7474536|pir||A69780 conserved hypothetical protein
ydfC - Bacillus subtilis >gi|1881343|dbj|BAA19370.1|
(AB001488) FUNCTION UNKNOWN, SIMILAR PRODUCT IN E. COLI.
[Bacillus subtilis] >gi|2632836|emb|CAB12343.1| (Z99106)
similar to hypothetical proteins [Bacillus subtilis]
Length = 306
Score = 79.2 bits (192), Expect = 5e-14
Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 24/285 (8%)
Query: 13 LISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTSQALPGL----LV 68
L+ +W S FP ++ G+E Y P FR LI S+ +L+F + T LP L +
Sbjct: 14 LMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFA---VLTQMRLPDLKDIPAI 70
Query: 69 GLSLFLGFSFQVVGLKYTTSSNSAFITSLYM----VFTPFVAILLLKTRVKLIDWVALGL 124
L FLGF+F + L + SA + SL + +F+ ++ L K W+ +
Sbjct: 71 FLLGFLGFAFYHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMI 130
Query: 125 ALLGTYLIS-NVGNFNY---GDMLTVLAALS----FAFQIVLVEYFGNLGIGLAFWQVFW 176
+LLG LI+ G+F Y G ++ +LAA S F FQ ++ +G I + ++
Sbjct: 131 SLLGVLLIAFGAGDFTYSMSGILVILLAAFSESIYFVFQARYIKKYG--FIPFVTFTIWG 188
Query: 177 NSMFSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAIIYSA 236
++ L + M S +I+Y ++ T I + + + A +
Sbjct: 189 GTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGASEATLSLYV 248
Query: 237 EPVFGHFFSFLILGEVLSWKGYIGALLILIAV---WLEISRENLI 278
P S+L +GE+ + +G ++ + V +L++++ N I
Sbjct: 249 TPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKI 293
>pir||A83049 hypothetical protein PA4779 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951044|gb|AAG08165.1|AE004891_7
(AE004891) hypothetical protein [Pseudomonas aeruginosa]
Length = 297
Score = 76.5 bits (185), Expect = 3e-13
Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 20/285 (7%)
Query: 9 LILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTSQA---LPG 65
L+ +L++ IWG F V+K+G+ D+PP+ F A RF +A+L +L+ LR + L G
Sbjct: 7 LLALLVTLIWGLNFVVIKVGLGDFPPLLFCALRFALAALPLLV-LRGPMPAPFGRILLIG 65
Query: 66 LLVGLSLFLGFSFQVVGLKYTTSSN-SAFITSLYMVFTPFVAILLLKTRVKLIDWVALGL 124
+L+G+ + F VG+ + S+ + + FT +A L L R L L
Sbjct: 66 VLLGV---VKFGLLFVGMAQGMPAGLSSLVLQSQVFFTILIAALWLGERPTPRGLFGLLL 122
Query: 125 ALLGTYLIS---NVGNFNYGDMLTVLAALSFAFQIVLVEYFGNLG-IGLAFWQVFWNSMF 180
A G LI +G+ +L V AAL+++F + + G + L W +
Sbjct: 123 AAAGLVLIGLERPLGDSLLAFLLVVAAALAWSFANIATKRSGATDMLRLICWVSLVPPLP 182
Query: 181 SLAYAAIFEGLPMPREGSTL-------FAIIYTAIMATAIAFAVQVKYQPKIDSHRAAII 233
LA + +FEG P E + L A++Y A AT + FA+ +
Sbjct: 183 LLALSYLFEG-PQAIERAVLNMSWGGFGALLYIAFGATTVGFAIWSFLLRHYPASLVTPF 241
Query: 234 YSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWLEISRENLI 278
A PV G +L+LGE L + L+ + + + + +L+
Sbjct: 242 ALAVPVSGMLAGWLLLGERLDLDSLLACALVFVGLAITLLPASLL 286
>dbj|BAB04109.1| (AP001508) unknown conserved protein [Bacillus halodurans]
Length = 311
Score = 71.8 bits (173), Expect = 9e-12
Identities = 75/291 (25%), Positives = 128/291 (43%), Gaps = 23/291 (7%)
Query: 1 MDETRKAELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLM--LIFLRKDIK 58
M++T A+L ++ I GS+ K+ +E +P RFLIA+L++ ++ ++ I
Sbjct: 1 MNQTISAQLKIMFAMVIVGSSVVAGKMLVESFPVFLASELRFLIAALILVPMLLKKEGIP 60
Query: 59 T-SQALPGLLVGLSL---FLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRV 114
T S+ G+L +L FL F + GL YTT+ I S +A + LK ++
Sbjct: 61 TFSKKEVGILFLQALSGVFLFSIFMLYGLMYTTAMEGGIIMSTLPAVVALMAFITLKEKL 120
Query: 115 KLIDWVALGLALLGTYLISNVGNFN---------YGDMLTVLAALSFAFQIVLVEYFGNL 165
+ + + LA+ GT I+ G + G++L + A +S A I+ +
Sbjct: 121 TRLTIIGILLAVGGTLAINTSGTLSDVERGVAPLLGNLLIIGAVISEALFIIFGKSISQR 180
Query: 166 GIGLAFWQVFWNSMFSLAY---AAIFEGLPMPREGSTL---FAIIYTAIMATAIAFAVQV 219
LA + S+F + AI+E P +L I Y ++ T IAF +
Sbjct: 181 VSPLAISTMV--SVFGVVLFLPFAIYEATRFPLTDVSLNDWLIIFYFGVVVTVIAFVLMY 238
Query: 220 KYQPKIDSHRAAIIYSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWL 270
+ K+ + ++ P+ S LIL E S G L+L A+ L
Sbjct: 239 QGIEKVPASTVGVLTGVLPISAVLLSALILKESFSTFHVAGMGLVLAAILL 289
>pir||B82172 conserved hypothetical protein VC1656 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656171|gb|AAF94807.1|
(AE004244) conserved hypothetical protein [Vibrio
cholerae]
Length = 287
Score = 70.6 bits (170), Expect = 2e-11
Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 18/277 (6%)
Query: 7 AELILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIASLLMLIFLRKDIKTSQALP-- 64
AEL+L++ + + + K I++ PP F+ RF+ ASL +L F +K +
Sbjct: 7 AELLLVVTTLLAAGGWVFSKQAIQELPPFGFIGLRFIAASLCLLPFCLNALKQASRQACF 66
Query: 65 -----GLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDW 119
G+L+ SLF + T AFI SL M+F P +A + R W
Sbjct: 67 QSMGVGVLLAASLFCWIHAISIS---DTLGEGAFIMSLSMLFVPLLAWPIFGQRPIRAFW 123
Query: 120 VALGLALLGTYLISNVGNFNY-GDMLTVLA-----ALSFAFQIVLVEYFGNLGIGLAFWQ 173
++L +A++G +L++ G + + + L LA AL F F + L Q
Sbjct: 124 LSLPVAVVGLFLLAWNGTWQFAANQLWFLAASCCLALHFNFNSRFSSQLPPM--LLTTLQ 181
Query: 174 VFWNSMFSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQPKIDSHRAAII 233
+F + + + E P T + ++AT++ + +Q Q + AA++
Sbjct: 182 LFTAGCLGITLSWLTESWPATISPVTWKWFALSVLLATSLRYLMQTMGQKSANPTNAALL 241
Query: 234 YSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWL 270
EPV+ S +I E + + +G +L ++ L
Sbjct: 242 MLLEPVWTLVLSVVIYQETMPFNKMLGCGFLLASLLL 278
>sp|P31437|YICL_ECOLI HYPOTHETICAL 33.1 KD PROTEIN IN SELC-NLPA INTERGENIC REGION
>gi|7429475|pir||E65167 hypothetical 33.1 kD protein in
nlpA 5' region - Escherichia coli (strain K-12)
>gi|290509|gb|AAA62012.1| (L10328) o307 [Escherichia
coli] >gi|1790092|gb|AAC76683.1| (AE000443) putative
permease transporter [Escherichia coli K12]
Length = 307
Score = 68.7 bits (165), Expect = 8e-11
Identities = 73/294 (24%), Positives = 129/294 (43%), Gaps = 30/294 (10%)
Query: 1 MDETRKAELILILISAIWGSTFPVMKLGIED------YPPITFVAFRFLIASLLMLIFLR 54
M TRK L +++ + +WGS+ + +E + +T + F LI LL L F+
Sbjct: 1 MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLI--LLTLSFVH 58
Query: 55 KD-----IKTSQALPGLLVGLSLFLGFSFQVVGLKYTTSSNSAFITSLYMVFTPFVAI-- 107
D I + LL+ S+ + Q+ L SN+A T L + +
Sbjct: 59 GDKIFSIINNHKDAISLLI-FSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWF 117
Query: 108 -LLLKTRVKLIDWVALGLALLGTYLISNVGN----------FNYGDMLTVLAALSFAFQI 156
L+ K+R ++ + A+ +L+GT+L+ GN +G AA +
Sbjct: 118 SLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTYPS 177
Query: 157 VLVEYFGNLGIGLAFWQVFWNSMFSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFA 216
L+ +G L + W + + L + A +G GS + A Y ++ T++ F+
Sbjct: 178 TLIARYGTLPV--VGWSMLIGGLILLPFYAR-QGTNFVVNGSLILAFFYLVVIGTSLTFS 234
Query: 217 VQVKYQPKIDSHRAAIIYSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWL 270
+ +K I +A+I+ AEP+ S L+LG + ++G LLIL +V L
Sbjct: 235 LYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVIL 288
>dbj|BAB05460.1| (AP001513) unknown conserved protein [Bacillus halodurans]
Length = 306
Score = 68.3 bits (164), Expect = 1e-10
Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 37/288 (12%)
Query: 10 ILILISAIWGSTFPVMKLGIEDYPPITFVAFRFLIAS--LLMLIFLRKDIKTSQALPGLL 67
++ + +WG ++KL + +PP+T A R +A +L+++ L K + A
Sbjct: 9 LVFFVMVLWGLNVVMLKLLVTSFPPVTMTALRIFVAGFVVLLVLLLLKTFRQLTATEWKY 68
Query: 68 VGLSLFLG----FSFQVVGLKYTTSSNSAFITSLYMVFTPFVAILLLKTRVKLIDWVALG 123
V L+ G F +GL T++SN+ I +L + T +AILLL + +
Sbjct: 69 VILAAIFGVLGHHFFLSIGLTMTSASNAVLILALLPLTTSLLAILLLGDMLTRWRGFGIF 128
Query: 124 LALLGTYLI-----SNVGNFNYGDMLTVLA----ALSFAF-----------QIV-LVEYF 162
L L+G I + GD + LA ALSF + Q+ ++
Sbjct: 129 LGLIGVCTIVLFGEGGLAGIRTGDGVIFLAMMIQALSFVYIKKATDTLDAKQVTGMMLLI 188
Query: 163 GNLGIGLAFWQVFWNSMFSLAYAAIFEGLPMPREGSTLFAIIYTAIMATAIAFAVQVKYQ 222
G+L + + + + N + S+ A++ + + +A+ AT + + +
Sbjct: 189 GSLLLFVTSFIIEPNGLASMGDKALW----------IWWVFVISAVFATGLGHIIYNQAI 238
Query: 223 PKIDSHRAAIIYSAEPVFGHFFSFLILGEVLSWKGYIGALLILIAVWL 270
++ + AI + P FG FS L LGE ++ G L I+ V L
Sbjct: 239 HQLGTGETAIFNNLVPFFGLLFSALFLGEAIALAQIAGLLFIVAGVIL 286
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.144 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93714688
Number of Sequences: 2977
Number of extensions: 3552396
Number of successful extensions: 11505
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11463
Number of HSP's gapped (non-prelim): 21
length of query: 280
length of database: 189,106,746
effective HSP length: 52
effective length of query: 228
effective length of database: 157,985,422
effective search space: 36020676216
effective search space used: 36020676216
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)