BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2383 (PAB2383) DE:Hypothetical protein
(459 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 925 0.0
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 460 e-128
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 425 e-118
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 352 4e-96
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 349 5e-95
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 341 8e-93
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 316 4e-85
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 315 6e-85
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 311 1e-83
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 310 2e-83
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 300 2e-80
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 282 7e-75
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 263 4e-69
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 259 6e-68
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 224 2e-57
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 215 6e-55
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 194 2e-48
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 157 3e-37
pir||D71134 hypothetical protein PH0840 - Pyrococcus horikoshii ... 147 3e-34
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 134 3e-30
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 131 1e-29
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 88 2e-16
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st... 85 1e-15
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 80 7e-14
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 79 1e-13
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 925 bits (2365), Expect = 0.0
Identities = 459/459 (100%), Positives = 459/459 (100%)
Query: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE
Sbjct: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
Query: 61 RQIRRLREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSA 120
RQIRRLREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSA
Sbjct: 61 RQIRRLREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSA 120
Query: 121 LQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD 180
LQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD
Sbjct: 121 LQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD 180
Query: 181 SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKT 240
SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKT
Sbjct: 181 SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKT 240
Query: 241 YFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLK 300
YFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLK
Sbjct: 241 YFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLK 300
Query: 301 DPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFR 360
DPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFR
Sbjct: 301 DPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFR 360
Query: 361 FTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGW 420
FTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGW
Sbjct: 361 FTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGW 420
Query: 421 DASFALVAKNVHGKSKLREYGFNVWDLEDLKLHFEKKFR 459
DASFALVAKNVHGKSKLREYGFNVWDLEDLKLHFEKKFR
Sbjct: 421 DASFALVAKNVHGKSKLREYGFNVWDLEDLKLHFEKKFR 459
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 460 bits (1170), Expect = e-128
Identities = 241/453 (53%), Positives = 307/453 (67%), Gaps = 19/453 (4%)
Query: 4 KFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
KF+DRE E++ LE +W + PS V++YGRRR GKTRLL EFS+ K TFF+TF E +E Q+
Sbjct: 2 KFIDRELEMEILEREWENRPSFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQM 61
Query: 64 RRLREELAEHFNDELF--LSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSAL 121
+ ++ +AE D+ L DW L +YLA KV + LI+LDEF+YAIKS+R I+S L
Sbjct: 62 KEFKKTMAEFLGDDFARKLETRDWLDLLRYLAEKVDD-CLIVLDEFTYAIKSERKILSDL 120
Query: 122 QRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFDS 181
QR WD S+K VMLV+SGSL+GMM D+VLSY+SPLYGRRT S +LKP N+LKFF
Sbjct: 121 QRTWDDILSEKKVMLVISGSLLGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKFFSD 180
Query: 182 FEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTY 241
E G+ +YMLVGGIP+YL +A RY FI E FL GFFYDEPY+LL ELRELKTY
Sbjct: 181 PEFGIRVYMLVGGIPSYLKLAGRYNTVEEFIREEFLSDYGFFYDEPYVLLGEELRELKTY 240
Query: 242 FSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLKD 301
FSIL A A G R IA++ GL R +YPY+DTLVRLG +ERE PI + K +Y++KD
Sbjct: 241 FSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVRLGLVERESPILGSRKVSLYRIKD 300
Query: 302 PMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRF 361
PMLLTWF++ I G D + ++Y IRFE++A+EFL P F
Sbjct: 301 PMLLTWFTLTYPQMAEISSGTAKLD----SLYKVYSIRFEELAKEFLTLFR-----PIEF 351
Query: 362 TRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKF-KLMNLEGW 420
+GRWWY+GEEIDIVA+ R + L EVKWK+LSKR A +L++L+ K KL +E
Sbjct: 352 ETLGRWWYRGEEIDIVAL--RKDKTTLIEVKWKDLSKRSALRVLRELEEKSEKLHPIE-- 407
Query: 421 DASFALVAKNVHGKSKLREYGFNVWDLEDLKLH 453
+ L+AK+V GK KLRE G+ VWDLED+ H
Sbjct: 408 --NIGLIAKSVRGKEKLREEGYLVWDLEDIIAH 438
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 425 bits (1080), Expect = e-118
Identities = 204/315 (64%), Positives = 257/315 (80%), Gaps = 1/315 (0%)
Query: 135 MLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFDSFEVGLEMYMLVGG 194
MLVLSGSL+G+M D VLS+SSPLYGRRT F L+ L LF SL+FF S GL+ YML+GG
Sbjct: 1 MLVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKSPIEGLKFYMLLGG 60
Query: 195 IPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTYFSILSATASGKTR 254
IPAYLIIASRYE F+E FL EG+FYDEPYI+LS EL+ELKTYFSILSA +SG+ R
Sbjct: 61 IPAYLIIASRYETVGEFVEREFLTPEGYFYDEPYIVLS-ELKELKTYFSILSAMSSGRRR 119
Query: 255 ASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLKDPMLLTWFSIVPKN 314
SEIAS GLEGRKIYPYL+TL+RLGF+ERE+PIAR +KRG+Y++ DPML++WFS++ N
Sbjct: 120 PSEIASEVGLEGRKIYPYLETLIRLGFVERELPIARKEKRGLYRISDPMLMSWFSLIYPN 179
Query: 315 RTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRFTRIGRWWYKGEEI 374
RT IELG I+ + V++ +QRI+ RFEDV+REFLVE+N+ G+LPFRFT+IGRWWYKGEEI
Sbjct: 180 RTEIELGTITLERVEKILQRIFSFRFEDVSREFLVEMNKAGKLPFRFTKIGRWWYKGEEI 239
Query: 375 DIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGWDASFALVAKNVHGK 434
D+VA+NE ++ L EVKWK+L +RE KGILKDL++K L+ L+GWD ++ L+ K++ K
Sbjct: 240 DLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLVGLDGWDKNYGLIEKSIERK 299
Query: 435 SKLREYGFNVWDLED 449
KLRE + VWDL+D
Sbjct: 300 EKLREENYLVWDLKD 314
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 352 bits (894), Expect = 4e-96
Identities = 197/464 (42%), Positives = 279/464 (59%), Gaps = 19/464 (4%)
Query: 1 MISK--FVDREDELKALEDQWNSTPS-LVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMED 57
++SK F+DR+ EL LE++ S + ++IYGRRR GKT L++EF + + E
Sbjct: 33 LVSKQLFIDRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARET 92
Query: 58 TRERQIRRLREELAEHFNDELFLSFNDWYPL---FKYLASKVTEKTLIILDEFSYAIKSD 114
+ + R LAE+FND FL N L F+YL++K + +I +DEF Y +K +
Sbjct: 93 SEIENLERFSLRLAEYFNDS-FLKKNPLRSLDAFFEYLSTKAEKPFIIAIDEFPYLVKGN 151
Query: 115 RTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFN 174
+ + S LQ W+ SKK + L++SGS + M + +L Y SPLYGRRT LKPL FN
Sbjct: 152 KALPSILQEYWEMKLSKKKIFLIVSGSSVSMT-ERLLGYKSPLYGRRTAQLKLKPLDFFN 210
Query: 175 SLKFFD--SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIE--ETFLRTEGFFYDEPYIL 230
+ +F S E + +Y ++GG PAYL+ + D + E +++ R + Y + +
Sbjct: 211 AREFLPKYSLEDFVRVYGILGGTPAYLL---EFSDEKSLEENLKSYFRVDSLLYGDALFI 267
Query: 231 LSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPI-- 288
L EL E + YF+I+ A A G T EI + GLE + YL L+ L + RE+PI
Sbjct: 268 LREELDEPRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLIDLDLVRREVPITA 327
Query: 289 ARNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGI--ISYDDVKEDIQRIYGIRFEDVARE 346
+R ++G Y + D WF V N IE G + D V +DI G FE VA+E
Sbjct: 328 SRKSRKGRYYIADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAKE 387
Query: 347 FLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILK 406
FL+ LN+ RLPFRF+R+GRWWYK EEID+VA+NER K++L EVKWK+LSKREA+GILK
Sbjct: 388 FLLRLNKSERLPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILK 447
Query: 407 DLKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDL 450
DLKRK KL+ L+ W + LVAK+V GK +++E G+ WDLED+
Sbjct: 448 DLKRKAKLVGLDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLEDI 491
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 349 bits (885), Expect = 5e-95
Identities = 191/456 (41%), Positives = 277/456 (59%), Gaps = 11/456 (2%)
Query: 1 MISKFVDREDELKALEDQWNS-TPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTR 59
++S+F+DREDEL+ L +W+S L+IIYGRRR GKT LL +F + Y E++
Sbjct: 3 LVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFL-AEVGGIYLLAEES- 60
Query: 60 ERQIRRLREELAEHFNDELFLSFN---DWYPLFKYLASKVTEKTLIILDEFSYAIKSDRT 116
E + E LAE+FND FL N +W F YLA K +E+ ++++DE Y KS +
Sbjct: 61 ETVLEDFSERLAEYFNDP-FLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKD 119
Query: 117 IVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSL 176
+S LQ+ WD S +ML+L GSL+ M + +LS SP+YGRRT ++ ++ + FN+
Sbjct: 120 FLSTLQKYWDLYLSDTKIMLILCGSLVSFM-EGILSAKSPIYGRRTGAWKVEEMDFFNAW 178
Query: 177 KFFD-SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGEL 235
KF D E + +Y + GG+P YL + D + E L +YDEP LL EL
Sbjct: 179 KFHDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQEL 238
Query: 236 RELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRG 295
R++ YFSIL A A G TR +IA A +E + + YL L +G+IE E P+ R
Sbjct: 239 RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG-RT 297
Query: 296 IYKLKDPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRG 355
IY+++D + WF V R+ IE+G +++K + G FE +AR+FLV LN G
Sbjct: 298 IYRIRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLG 357
Query: 356 RLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLM 415
RLPFRFT+IGRWW++GEE+DIVA+NE K+ +L V+WK L ++ + IL DL+RK +L+
Sbjct: 358 RLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELI 417
Query: 416 NLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK 451
LEGW+ +A+VA++V GK L E ++WDL D +
Sbjct: 418 GLEGWEKHYAIVARDVQGKEDL-EDNSHIWDLRDFE 452
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 341 bits (866), Expect = 8e-93
Identities = 194/464 (41%), Positives = 281/464 (59%), Gaps = 19/464 (4%)
Query: 2 ISKFVDREDELKALEDQWNS-TPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
I KFVDRE EL LE+++ S L+IIYGRRR GKT LL+ F++ K ++ E
Sbjct: 8 IQKFVDRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLASEKPYR 67
Query: 61 RQIRRLREELAEHFNDELF--LSFNDWYPLFKYLASKVT-EKTLIILDEFSYAIKSDRTI 117
+R L+ + + D LF + F+D L + +V + ++I+DEF Y I+ + +
Sbjct: 68 DNLRELQRMMGDFLGDRLFSRVEFSDIDELLIEFSKRVQGRRVVLIIDEFPYLIEHYKPV 127
Query: 118 VSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLK 177
+S +QRAWD + SK +ML+L GS + M EVL Y SPLYGRRT + + L ++ +
Sbjct: 128 LSLIQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQWKVGELPFWSLRE 187
Query: 178 FFDSF--EVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGEL 235
FF S+ E +++Y ++GGIPAYL+ + ++ + E L F Y+E ILL E+
Sbjct: 188 FFPSYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLSKGAFLYEEAEILLKEEM 247
Query: 236 RELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDK-- 293
RE YF IL A ASG++R EI + GL+ + YL+ L +LG +ERE+P+ + K
Sbjct: 248 REPANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVLEKLGMVEREVPVTASRKEA 307
Query: 294 --RGIYKLKDPMLLTWFSIVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFEDVAR--EF 347
RG Y + D L WF V N++ +E G+ ++ KED + G FE + R E
Sbjct: 308 LKRGRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERSKEDFKEYMGGVFERLLRKPEV 367
Query: 348 LVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKD 407
+L FRF+R+GRWWYK EEID+VA+NER K++L EVKWK+LSKREA+GILKD
Sbjct: 368 FTKLT-----DFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKD 422
Query: 408 LKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK 451
L+RK KL+ L+ W+ + LV K++ GK KLRE + VWDL+D +
Sbjct: 423 LERKAKLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKDFE 466
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 316 bits (801), Expect = 4e-85
Identities = 181/465 (38%), Positives = 265/465 (56%), Gaps = 17/465 (3%)
Query: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
MI KFV+R+ ELK LE W L ++YGRRR GKT LL +F + K ++ + E
Sbjct: 6 MIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYE 65
Query: 61 RQIRRLREELAEHFNDEL-FLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVS 119
+ ++R +E++ + F SF D FK+L + K L+I DEF Y I++D+ ++S
Sbjct: 66 KDLKRFSQEISSFIGAPVRFESFKD---AFKFLRGQ--GKLLVIFDEFPYLIEADKGVIS 120
Query: 120 ALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFF 179
Q D + ++L GS +GMM E+LSY SPLYGR + +KP F+ +++F
Sbjct: 121 EFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF 180
Query: 180 DS-FEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELREL 238
FE L +Y + GIP Y+ D I F F ++E +LL ELR
Sbjct: 181 GKDFERLLRLYGVTWGIPKYMEFFKTGSDDE--IINNFFNPSAFLFNEARLLLMEELRNP 238
Query: 239 KTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIA-RNDKRGIY 297
Y I+ A A GKTR +EIA Y G+E + + YL L LG + RE+PI R KRGIY
Sbjct: 239 TRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIY 298
Query: 298 KLKDPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIY----GIRFEDVAREFLVELNR 353
++D + V + E+ ++ + D R + G FE VAREFL+E+N+
Sbjct: 299 VIEDEYFRFYHRFVSPHYE--EIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNK 356
Query: 354 RGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFK 413
G LPF+F IG+WW + EEID++A+N K++LL EVKWKEL ++EA+G+LKDL+RK +
Sbjct: 357 HGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGE 416
Query: 414 LMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK-LHFEKK 457
L+ LE W + L+AK + K L+ G+ +WDL+D + L+ KK
Sbjct: 417 LVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLNSNKK 461
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 315 bits (799), Expect = 6e-85
Identities = 174/460 (37%), Positives = 262/460 (56%), Gaps = 17/460 (3%)
Query: 5 FVDREDELKALEDQWNSTPS-LVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
F+ RE+EL L+++ S + ++IYGRRR GKT L++E + + E + +
Sbjct: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
Query: 64 RRLREELAEHFNDELFLS--FNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSAL 121
+R E +A++F+ +L F +W F+YL K E+ ++ +DEF Y +K ++ + S L
Sbjct: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
Query: 122 QRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFDS 181
Q WD SK + L++ GS I MM +++L Y SP+YGRRT LKP+ F++ KF
Sbjct: 122 QEYWDLKLSKSKIFLIICGSSITMM-EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
Query: 182 FEV--GLEMYMLVGGIPAYLIIASRYEDTRRFIEETFL---RTEGFFYDEPYILLSGELR 236
+ + L Y ++GG PAYL+ +++D ++ IEE L R + F Y + +L EL
Sbjct: 181 YPIEDSLRAYGILGGTPAYLL---KFDD-KKSIEENLLSYFRPDSFLYQDALFILREELN 236
Query: 237 ELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARN--DKR 294
E + YF+I+ A A G T EI + L+ + YL L+ L + RE+PI + ++
Sbjct: 237 EPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRK 296
Query: 295 GIYKLKDPMLLTWFSIVPKNRTGIELGI--ISYDDVKEDIQRIYGIRFEDVAREFLVELN 352
G Y + DP WF V N IE G + V ED + FEDV R+FLV LN
Sbjct: 297 GRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLN 356
Query: 353 RRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKF 412
+ L F +IGRWW+KGEEID+VA+NE K +L EV+WKELS+ E + ++ L +K
Sbjct: 357 KESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKA 416
Query: 413 KLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLKL 452
+L+ LE W + LV K + GK KLR G+ VWDL+D +L
Sbjct: 417 QLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFEL 456
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 311 bits (788), Expect = 1e-83
Identities = 185/458 (40%), Positives = 255/458 (55%), Gaps = 22/458 (4%)
Query: 7 DREDELKALEDQWNSTP-SLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQIRR 65
+ E ELKA+ + S L++IYGRRR GKTRL++E +G P +Y +E R R
Sbjct: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRHFR- 62
Query: 66 LREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSALQRAW 125
E AE E+ DW + L K+ II+DEF IK D +VS QRA
Sbjct: 63 ---ETAERVFPEVKYVREDWESILHALKGKI-----IIIDEFPNLIKEDPKVVSLFQRAI 114
Query: 126 DHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD--SFE 183
D + S ++L GS + ++ ++VLS SPLYGRRT S LKPL F +FF S+E
Sbjct: 115 DLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWE 174
Query: 184 VGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTYFS 243
+E+Y GIP Y+I ++E+ L FF DE LL E E + Y
Sbjct: 175 ELVEIYGFTDGIPYYIIQVKL--PFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRR 232
Query: 244 ILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARN--DKRGIYKLKD 301
IL A A GKT EI + G+ I PYL L+ + RE+PI KRG Y L D
Sbjct: 233 ILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLAD 292
Query: 302 PMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRF 361
L WF + N + IE G S ++++ D + G FE VAR+FL++LN F
Sbjct: 293 NFLAFWFRYIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INF 346
Query: 362 TRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGWD 421
T+IGRWW+K +EIDIVA+NER K +L AEVKWK+L ++EA+ IL++L++K KL L+ W+
Sbjct: 347 TKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWE 406
Query: 422 ASFALVAKNVHGKSKLREYGFNVWDLEDLKLHFEKKFR 459
S+ L+A+N+ GK L+ G+ VWDL D L + + R
Sbjct: 407 KSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQPLR 444
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 310 bits (786), Expect = 2e-83
Identities = 173/458 (37%), Positives = 268/458 (57%), Gaps = 19/458 (4%)
Query: 5 FVDREDELKALEDQWN-STPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
F+DRE EL+ LE ++ P ++IYGRRR GKT LL+EF + E + +
Sbjct: 2 FLDRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLENL 61
Query: 64 RRLREELAEHFNDELFLS--FNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSAL 121
+R + L+E+F D+ F +W +YL K TE+ ++++DEF Y +K DR++ S L
Sbjct: 62 KRFSDRLSEYFGDDFLKRNPFQNWDAFLEYLNQKATERLVVVIDEFPYLVKGDRSLPSIL 121
Query: 122 QRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD- 180
Q WD S + L++ GS I MM +++L Y SP+YGRRT +LKP+ ++ +F
Sbjct: 122 QEYWDLKLSNGRIFLIICGSSISMM-EKLLGYKSPIYGRRTGQINLKPVDFLHAREFLPG 180
Query: 181 -SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEET--FLRTEGFFYDEPYILLSGELRE 237
S E ++ Y ++GG PA+L+ ++D++ E +LR++ Y + + +L EL E
Sbjct: 181 YSLEDFIKAYGILGGSPAHLL---EFDDSKTIKENLLEYLRSDSLLYQDAFFVLREELEE 237
Query: 238 LKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPI--ARNDKRG 295
+ YF+I+ A A+GKT EI + GL + YL L+ L F++REIPI +R +RG
Sbjct: 238 PRNYFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIELDFVKREIPITASRKSRRG 297
Query: 296 IYKLKDPMLLTWFSIVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFEDVAREFLVELNR 353
Y +KD WF + N IE + + +D+ G FE+VA EFL ++
Sbjct: 298 RYYIKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVAIEFLPLISN 357
Query: 354 RGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFK 413
+ LPF+ +IGRWW+K EEID+VA NE+ ++ +L EVKWK L+K EA ILKDL RK K
Sbjct: 358 K--LPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILKDLNRKSK 415
Query: 414 LMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK 451
++ ++ W+ ++AK V K K++ G +WDLED++
Sbjct: 416 ILKMKEWEQYHGIIAKRVKDKEKIK--GGLIWDLEDIE 451
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 300 bits (760), Expect = 2e-80
Identities = 174/453 (38%), Positives = 261/453 (57%), Gaps = 17/453 (3%)
Query: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
MI KFV+R+ EL+ LE + +LV+IYGRRR GKT LL +F + K ++ E
Sbjct: 6 MIRKFVNRKRELETLEKLYEKGANLVVIYGRRRVGKTALLRKFLEEKRGIYFLCSRRGYE 65
Query: 61 RQIRRLREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSA 120
+ ++R +EL++ F + LSF D+ F++L+ + K ++++DEF Y I+S + +VS
Sbjct: 66 KDLKRFSQELSKFFG--IPLSFEDFEDAFEFLSKQ--GKLVVVIDEFPYLIESYKPVVSV 121
Query: 121 LQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD 180
QR D VML+L GS IGMM +VL Y +PLYGR +KP F+ ++++
Sbjct: 122 FQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKPFRFFDMVEWYG 181
Query: 181 -SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELK 239
FE + +Y + G+P Y+ D I F F ++E +LL ELR
Sbjct: 182 RDFEKLVRLYGVTWGVPRYMEFFREGSDEE--IIRNFFDPSSFLFNEAKLLLMEELRNPA 239
Query: 240 TYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIA-RNDKRGIYK 298
Y I+ A A G TR SEIA+Y+ ++ + + YL TL LG ++R PI RN KRG+Y
Sbjct: 240 VYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTLQELGIVKRITPITKRNAKRGVYV 299
Query: 299 LKDPMLLTWFSIVPKNRTGIEL--GIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGR 356
++D ++ V IE + +D +++ G FE V++EFL+ +
Sbjct: 300 IEDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSYLGETFEKVSKEFLLAIGD--- 356
Query: 357 LPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMN 416
+ +IG+WWYKGEEID+VA+NER K+ L EVKW+ L +REAK ILK L++K L+N
Sbjct: 357 ----YPKIGKWWYKGEEIDLVALNEREKKALFVEVKWRGLKEREAKRILKRLEKKSMLIN 412
Query: 417 LEGWDASFALVAKNVHGKSKLREYGFNVWDLED 449
L+GW + ++A+ V GK LR+ G+ VWDLED
Sbjct: 413 LDGWIKDYGVIARRVEGKESLRDEGWLVWDLED 445
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 282 bits (713), Expect = 7e-75
Identities = 161/436 (36%), Positives = 243/436 (54%), Gaps = 18/436 (4%)
Query: 5 FVDREDELKALEDQWNSTP-SLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
FVDRE+ELKAL ++ +S ++IYGRRR GKT+L ++ + + +Y +E +
Sbjct: 2 FVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDNLKHF 61
Query: 64 RRLREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSALQR 123
+R A + + DW F +L K+ II+DEF IK + ++S QR
Sbjct: 62 KRY----ASKVEPTIEYAKEDWEAYFNFLKDKI-----IIIDEFPNLIKENPNVLSLFQR 112
Query: 124 AWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFDS-- 181
D L++ GS I MM ++VLSY SPLYGR+T +KPL + +FF
Sbjct: 113 IVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFPKAI 172
Query: 182 FEVGLEMYMLVGGIPAYLI-IASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKT 240
+E +E+Y GIP YL + + D ++++ R + F E L+ E E T
Sbjct: 173 WEELVEIYGFADGIPYYLEKVKLPFWD---YLDKEIKRVDSFLRYEVDFLMKYEFEEPTT 229
Query: 241 YFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARN--DKRGIYK 298
Y IL A A G EI +Y G + + PYL L+ + FIER+ PI + K+G Y
Sbjct: 230 YKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIEVEFIERQTPITESVKSKKGRYY 289
Query: 299 LKDPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLP 358
+KD + +F + N + IE GI +++K D + G FE VA+EFL+ELN+ +LP
Sbjct: 290 IKDNFIAFYFRYIFPNLSAIEEGIFDIEEIKADYNQYLGFVFEKVAKEFLIELNKMNKLP 349
Query: 359 FRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLE 418
F+F +IGRWW++GEEID++A+N+ K+ L EVKWK+L R+ K I +DL RK KL+ L+
Sbjct: 350 FKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKDRDVKKIYRDLYRKSKLVGLD 409
Query: 419 GWDASFALVAKNVHGK 434
++ +A+V K + K
Sbjct: 410 DYEKYYAIVGKKIESK 425
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 263 bits (664), Expect = 4e-69
Identities = 134/319 (42%), Positives = 201/319 (63%), Gaps = 3/319 (0%)
Query: 135 MLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD-SFEVGLEMYMLVG 193
ML+L GSL+ M + +LS SP+YGRRT ++ ++ ++ F+ LKF E +++Y + G
Sbjct: 1 MLILCGSLVSFM-EGILSGKSPIYGRRTGTWKVEEMSFFDVLKFHPIDIETAIKIYGVFG 59
Query: 194 GIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTYFSILSATASGKT 253
G+P Y + +D I++ L +YDEP LL ELR++ YFSIL A + G +
Sbjct: 60 GVPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGYS 119
Query: 254 RASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLKDPMLLTWFSIVPK 313
R +IA A +E + + YL+ L +G+I E PI K +YK+ + WF V
Sbjct: 120 RFGQIADAARIETKSLGKYLNVLEEMGYIREEKPIVGRGKT-VYKINEHFFNFWFRFVFP 178
Query: 314 NRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRFTRIGRWWYKGEE 373
R+ IE+G +++K++ G FE+++R+FL+E+N+R +LPFRFT+IGRWWYKGEE
Sbjct: 179 RRSEIEMGFDVVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTKIGRWWYKGEE 238
Query: 374 IDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGWDASFALVAKNVHG 433
ID+VA+NE K+ L EVKWK L ++EA ILKDLKRK +L L W+ ++ ++AK++
Sbjct: 239 IDLVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKAYGIIAKSIME 298
Query: 434 KSKLREYGFNVWDLEDLKL 452
K +LRE GF WDL D +L
Sbjct: 299 KEELREEGFLAWDLRDFEL 317
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 259 bits (654), Expect = 6e-68
Identities = 143/319 (44%), Positives = 191/319 (59%), Gaps = 6/319 (1%)
Query: 145 MMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFDS--FEVGLEMYMLVGGIPAYLIIA 202
M+ ++VLSY SPLYGRRT S L+P+ F +FF S +E +E+Y + GIP Y+I
Sbjct: 1 MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60
Query: 203 SRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTYFSILSATASGKTRASEIASYA 262
+EE FF DE LL E E+ TY IL A A GKT EI +
Sbjct: 61 K--PPFWELLEEELKNPISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFT 118
Query: 263 GLEGRKIYPYLDTLVRLGFIEREIPIA--RNDKRGIYKLKDPMLLTWFSIVPKNRTGIEL 320
GL I PYL L+ I RE+PI + K+G Y + D L WF + N + IE
Sbjct: 119 GLRNSDITPYLRNLIEADLIVREVPITEKKTSKKGRYYVLDNFLAFWFRFIYPNLSRIEE 178
Query: 321 GIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVN 380
GI + D++K + R G FE +AR+FL+ELN+ +LPF+F +IGRWWYK EEIDIVA+N
Sbjct: 179 GIFNVDEIKGEYPRYLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEEIDIVALN 238
Query: 381 ERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGWDASFALVAKNVHGKSKLREY 440
ER K+ LL EVKWK L +REA+ IL+ L +K KL+ LEGW+ + L+A+ + K L E
Sbjct: 239 EREKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKRKEPLIED 298
Query: 441 GFNVWDLEDLKLHFEKKFR 459
G+ VWDLED + ++K R
Sbjct: 299 GYLVWDLEDFEEIVKQKSR 317
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 224 bits (564), Expect = 2e-57
Identities = 113/230 (49%), Positives = 148/230 (64%), Gaps = 2/230 (0%)
Query: 222 FFYDEPYILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGF 281
F + E LL E RE +TY+++L A A KTR +EIA YA LE + YL L L
Sbjct: 6 FLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDI 65
Query: 282 IEREIPIARNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGII--SYDDVKEDIQRIYGIR 339
++RE+PI + K+GIY+ +D WF V IE G + +D + G
Sbjct: 66 LKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGA 125
Query: 340 FEDVAREFLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKR 399
FE++ R+FL+EL G+LPF FT+IGRWW+KGEEIDIVA+NER K++LL EVKWKEL R
Sbjct: 126 FEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDR 185
Query: 400 EAKGILKDLKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLED 449
EA+ IL+DL+RK K MNL GW+ S+ LVAK V GK L+ G+ +WDLED
Sbjct: 186 EARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLED 235
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 215 bits (543), Expect = 6e-55
Identities = 158/468 (33%), Positives = 243/468 (51%), Gaps = 35/468 (7%)
Query: 5 FVDREDELKALEDQWNST-PSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
F DRE ELK L + ++ S V++YGRRR GKT L+ EF +GK Y F+ + E +
Sbjct: 10 FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGK-LGIYLFVGEKDEALL 68
Query: 64 -----RRLREELAEHFNDELFLSFNDWYPLFKYLASKVTE-KTLIILDEFSYAIKSDRTI 117
R + L+ + + L F+ LF++L + K +IILDEF ++
Sbjct: 69 LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
Query: 118 VSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLK 177
S+LQ+ WD V+L+ GS +GMM + PL+GR LKP + +
Sbjct: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
Query: 178 FFD-SFEVGLEMYMLVGGIPAYLIIASRYE-----DTRR---FIEETFLRTEGFFYDEPY 228
F + +E++ +GG+P YL+ Y +T R F E + LR EGF
Sbjct: 189 FVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGF-----N 243
Query: 229 ILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLV-RLGFIEREIP 287
+L R ++YFSIL A + G EI+ GL+ + YL L ++ +E+P
Sbjct: 244 VLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVP 303
Query: 288 IA---RNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFED 342
R ++ Y ++D WF V N +E G I+ +D++E+ G +E
Sbjct: 304 ATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYER 363
Query: 343 VAREFLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAK 402
+ REF+ RR L F R+GRWW+KGEEID++A NE +++ L EVKW +LSK AK
Sbjct: 364 IGREFI----RRIDLGFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAK 417
Query: 403 GILKDLKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDL 450
+L+DL+RK +L+ L G + + L+++ V GK +LR G+ V+DL D+
Sbjct: 418 RLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLNDI 464
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 194 bits (487), Expect = 2e-48
Identities = 144/416 (34%), Positives = 208/416 (49%), Gaps = 37/416 (8%)
Query: 6 VDREDELKALEDQWNSTP-SLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQIR 64
V+RE EL+AL+ + +S L+IIYGRRR GKT L++ G +Y E R+ +
Sbjct: 7 VNRERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLATEKNNLRKFK 66
Query: 65 RLREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSALQRA 124
EL E +++ DW +F YL K+ II+DEF Y IK D +I+S Q+
Sbjct: 67 ----ELTESKYEDIKYVKEDWEAIFHYLRDKI-----IIIDEFPYMIKEDESILSTFQKI 117
Query: 125 WDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD-SFE 183
D L+L GS I MM ++ +SY SPLYGRRT S LK L F LK F+ S
Sbjct: 118 VDETLKGSKTKLILLGSSISMM-EDAISYKSPLYGRRTASIELKELK-FKDLKGFNFSLI 175
Query: 184 VGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTYFS 243
+ +Y GG+P YL A ++I + F DE +L E E+ TY
Sbjct: 176 DAIHVYGFAGGVPFYLTKAK--TPFLKWINAELKEVDSFIKDEIDFMLRYEFSEIGTYKE 233
Query: 244 ILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLKDPM 303
IL A +SGK EI + + G + YL+ L ++G I +E P + K Y +KD
Sbjct: 234 ILHAISSGKNTLGEIKDFVRISG-DVSSYLNKLEKIGIIGKEFPY-KMKKGARYYIKDNF 291
Query: 304 LLTWFSIVPKNRTGIELGIISYDDVKEDIQRIY-GIRFEDVAREFLVELNRRGRLPFRFT 362
L WF+ + N + IE GI ++KED +Y G FE +ARE++ ++ +
Sbjct: 292 TLFWFTFIYPNLSLIEEGIY---EIKEDEYNVYLGRIFEKIAREYVEDVYK--------V 340
Query: 363 RIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLE 418
++ R W+K EIDI + E KW E E +L +LKRK + + L+
Sbjct: 341 KVERLWFKDVEIDIYGDG------IAGECKWSEGINGEK--VLYELKRKVEDLGLD 388
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 157 bits (392), Expect = 3e-37
Identities = 113/338 (33%), Positives = 176/338 (51%), Gaps = 30/338 (8%)
Query: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
++ KFV+R +EL+ L + SL+I+YGRRR GKTRL++E + P ++ E+
Sbjct: 10 IMHKFVNRSEELEKLR-AYLEKRSLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKEEEPR 68
Query: 61 RQIRRLREELAEHFNDELFL-----SFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDR 115
+ L ++L D FL SF++ + L + ++LDEF +K+
Sbjct: 69 ETLVSLSKKLYHATGDAQFLESPPSSFDELFELLGGIG------ITLVLDEFPLLVKNYP 122
Query: 116 TIVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNS 175
I+ LQ WD +VL GS + MM + Y SP++GRRT+S +KPL +
Sbjct: 123 RILGLLQEYWDFGEGGS---VVLCGSSVSMM-KGLTDYGSPIHGRRTISVKVKPLEFRHV 178
Query: 176 LKFFDSF--EVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRT---EGFFYDEPYIL 230
+FF + E + Y ++ GIP YL+ R+ D + +EE +R G+ Y+E +L
Sbjct: 179 GEFFPGYSPEELVRAYGVLDGIPEYLL---RF-DPSQSVEENVIREFFGRGYLYEEAELL 234
Query: 231 LSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPI-- 288
L ELR+L TY +IL A A+G T +EI + G++G K+ YL TL L ++RE P+
Sbjct: 235 LRYELRDLSTYNTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTLEELELVKREYPVLP 294
Query: 289 ---ARNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGII 323
R K Y L D ++S V + IELG++
Sbjct: 295 GAAKRRRKGARYGLSDNYFAFYYSFVYPFKEEIELGLL 332
>pir||D71134 hypothetical protein PH0840 - Pyrococcus horikoshii
>gi|3257251|dbj|BAA29934.1| (AP000003) 117aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 117
Score = 147 bits (367), Expect = 3e-34
Identities = 66/99 (66%), Positives = 82/99 (82%)
Query: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
MIS+F+DR+ EL LE +W +TPS V+IYGRRR GKTRLLVEFS+GK FFYTFME T+E
Sbjct: 1 MISQFIDRKRELAILEREWKNTPSFVVIYGRRRVGKTRLLVEFSKGKKVFFYTFMEGTKE 60
Query: 61 RQIRRLREELAEHFNDELFLSFNDWYPLFKYLASKVTEK 99
Q++ L +EL + FNDE+FLSF+DWYPLFKYL+ K+ EK
Sbjct: 61 SQVKSLAKELVDFFNDEIFLSFSDWYPLFKYLSGKLMEK 99
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 134 bits (333), Expect = 3e-30
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 2/197 (1%)
Query: 99 KTLIILDEFSYAIKSDRTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLY 158
+ ++I+DEF ++ R ++S LQ+AWD S+ +ML++ GS + +M E+L+Y SPLY
Sbjct: 11 RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
Query: 159 GRRTMSFHLKPLTLFNSLKFFDSFEVG--LEMYMLVGGIPAYLIIASRYEDTRRFIEETF 216
GRRT + L + F +F + + ++++ + G IPAYL+ S + + E
Sbjct: 71 GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
Query: 217 LRTEGFFYDEPYILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTL 276
L F Y+E LL ELRE YF+IL A ASG+ R EI + GL+ + YL L
Sbjct: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
Query: 277 VRLGFIEREIPIARNDK 293
RLG ++RE+P+ K
Sbjct: 191 QRLGIVKREVPVTATMK 207
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 131 bits (327), Expect = 1e-29
Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 5/155 (3%)
Query: 299 LKDPMLLTWFSIVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFEDVAREFLVELNRRGR 356
+ D WF V N+ +E G+ ++ K+D G+ FE + R V L G
Sbjct: 2 INDNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLTG- 60
Query: 357 LPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMN 416
F FT++GRWW +GEE++++A+NER K+ LL EVKWKELSKREAKGIL+DL RK +L+
Sbjct: 61 --FHFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVG 118
Query: 417 LEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK 451
L+ W + +VAK + +LRE G+ WDL D +
Sbjct: 119 LDSWKRFYGVVAKKIDDMEELREEGWLAWDLRDFE 153
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 88.2 bits (215), Expect = 2e-16
Identities = 50/143 (34%), Positives = 84/143 (57%), Gaps = 11/143 (7%)
Query: 310 IVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRFTRIGRW 367
+V N +E+G + Y+ + + YG FE++ E L + + F + +W
Sbjct: 4 VVYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEML----KLKIIDFGQKSVAKW 59
Query: 368 WYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGWDASFALV 427
W+KGEEID++A N +++ EVKWK+LS +EAKGIL+DL+RK ++ +G + ++
Sbjct: 60 WHKGEEIDVLAYNNN--KMIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDG-EKECYII 116
Query: 428 AKNVHGKSKLREYGFNVWDLEDL 450
AK++ GK KL+ ++ DLE L
Sbjct: 117 AKSIEGKEKLK--ALDLMDLEKL 137
>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
>gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 207
Score = 85.4 bits (208), Expect = 1e-15
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 24 SLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQIRRLREELAEHFN--DELFLS 81
+LV++ GRRR GK+RL+ EF +GK F E + +L + L ++FN F +
Sbjct: 11 TLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFST 70
Query: 82 FNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSALQRAWDHDFSKKPVMLVLSGS 141
F+D F+++AS+ E+ + L +S + + Q D + +ML+LS S
Sbjct: 71 FSD---AFRFVASQSKERLVAYLLRYS-------DVEAEFQSTVDEILEESNIMLILSAS 120
Query: 142 LIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD--SFEVGLEMYMLVGGIPAYL 199
+G++ YSS LYGR + +L+PL + ++F+ S E +++Y + GIP YL
Sbjct: 121 SMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYL 180
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 79.6 bits (193), Expect = 7e-14
Identities = 96/351 (27%), Positives = 149/351 (42%), Gaps = 71/351 (20%)
Query: 7 DREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFME-------DTR 59
DRE+E + LE+ + P L ++ G RR GK+ LL F +P E TR
Sbjct: 16 DREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITR 74
Query: 60 ERQIRRLREELA------EHFNDELFLSFNDWYP-------LFKYLASKVTE--KTLIIL 104
E I+ L+ ++ F L L F P +F+ L E + ++
Sbjct: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
Query: 105 DEFSY----AIKSDRTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMID--EVLSYSSPLY 158
DE Y + + +++ A+D S + ++L+GS +G++ D ++ Y SPLY
Sbjct: 135 DEAQYLRFYGSRGGKELLALFAYAYD---SLPNLKIILTGSEVGLLHDFLKITDYESPLY 191
Query: 159 GRRTMSFHLKPLTLFNSLKFFDS--FEVGL--------EMYMLVGGIPAYLIIAS----R 204
GR +KP S++F EV L E L+ GIP +L++ R
Sbjct: 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLR 251
Query: 205 YEDTRRFIEETFLRTEGFFYDEPYILLSGELRELK----TYFSILSATASGKTRASEIAS 260
D R ++ T +G L+ GEL EL+ Y IL A A G R S I
Sbjct: 252 NGDFGRAMKRTLEVAKG--------LIMGELEELRRRSPRYVDILRAIALGYNRWSLIRD 303
Query: 261 YAGLEGRKI-----YPYLDTLVRLGFIEREIPIARNDKRGIYKLKDPMLLT 306
Y ++G KI Y L+ L ++ +I E YK+ DP++ T
Sbjct: 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE--------DNTYKIADPVVAT 346
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 78.8 bits (191), Expect = 1e-13
Identities = 96/349 (27%), Positives = 151/349 (42%), Gaps = 71/349 (20%)
Query: 7 DREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQ---- 62
DRE E K LE P + ++ G RR GK+ LL + P E ER
Sbjct: 16 DREKEFKKLEKSIEDYP-MTLLLGIRRVGKSSLLKAYLSENPGILIDCRELYGERGHITR 74
Query: 63 ---IRRLRE------ELAEHFNDELFLSFNDWYP-------LFKYL--ASKVTEKTLIIL 104
IR+L+E +L F L L F P +F+ L K K ++
Sbjct: 75 IDLIRKLQERGNIVQKLLSRFKVSLDLKFLKIEPKEVSLMDIFESLNEIGKKMGKFVLAF 134
Query: 105 DEFSY----AIKSDRTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMID--EVLSYSSPLY 158
DE Y + + +++ A+D+ + K +VL+GS +G++ D + Y SPLY
Sbjct: 135 DEAQYLRFYGSRGGKDLLALFAYAYDNLENLK---IVLTGSEVGLLHDFLGINDYESPLY 191
Query: 159 GRRTMSFHLKPLTLFNSLKFFDS--FEVGLEM--------YMLVGGIPAYLIIAS----R 204
GR +++P L S +F + EV L + ++ GIP +L++ R
Sbjct: 192 GRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIEKAIEMLDGIPGWLVLFGVEYMR 251
Query: 205 YEDTRRFIEETFLRTEGFFYDEPYILLSGELREL----KTYFSILSATASGKTRASEIAS 260
+D + ++ TF +G L+ GELREL + Y IL A G R S I
Sbjct: 252 EKDYEKAMKRTFEVAKG--------LILGELRELEKRSRRYLEILRGIALGYNRWSLIRD 303
Query: 261 YAGLEG-----RKIYPYLDTLVRLGFIEREIPIARNDKRGIYKLKDPML 304
Y ++G ++Y L+ L ++G+I N+ G Y L DP++
Sbjct: 304 YLAVKGIPTPEPRLYELLNNLKKMGWI--------NEVEGKYILSDPLV 344
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.142 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161541671
Number of Sequences: 2977
Number of extensions: 6690624
Number of successful extensions: 17522
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17426
Number of HSP's gapped (non-prelim): 25
length of query: 459
length of database: 189,106,746
effective HSP length: 54
effective length of query: 405
effective length of database: 156,788,448
effective search space: 63499321440
effective search space used: 63499321440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 167 (69.5 bits)