BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2384 1336543 1335965 -193 !not a gene!
         (193 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71111 hypothetical protein PH0659 - Pyrococcus horikoshii ...    88  8e-17

>pir||D71111 hypothetical protein PH0659 - Pyrococcus horikoshii
           >gi|3257067|dbj|BAA29750.1| (AP000003) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score = 87.8 bits (214), Expect = 8e-17
 Identities = 58/159 (36%), Positives = 66/159 (41%), Gaps = 1/159 (0%)

Query: 22  LVTSLFSSMPLLTSFFPFXXXXXXXXXXXXXXAIFXXXXXXXXXXXXXXXXXXXPFSLNS 81
           ++TSL SS+P  TS  P               AIF                   P    S
Sbjct: 1   MLTSLLSSIPFSTSSSPLSVISTFLITFSSSSAIFLLFNSLTEIIFSISSTETSPLDKTS 60

Query: 82  FKAISIGLSPSFSPFSVISRTNPFSSFLTFASPSLLRIPTIAXXXXXXXXXXXXXRYAFF 141
            KAISI L  +F PFS   R  P    LT A PS L  PT+A                F 
Sbjct: 61  -KAISIALFSAFLPFSDNLRVRPSLVLLTSAHPSFLSTPTMAFSSSSLKTSFRSFNVTFP 119

Query: 142 FSLRTLSALISGRPILEYSFPMSVRTIIFSFLSCNFINP 180
           FSLR  +ALISG PI  Y FP+SV  II    SC F +P
Sbjct: 120 FSLRIFNALISGSPISIYLFPVSVNFIILLLSSCTFASP 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.139    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46199944
Number of Sequences: 2977
Number of extensions: 1226004
Number of successful extensions: 3162
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3160
Number of HSP's gapped (non-prelim): 1
length of query: 193
length of database: 189,106,746
effective HSP length: 54
effective length of query: 139
effective length of database: 156,788,448
effective search space: 21793594272
effective search space used: 21793594272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 163 (67.9 bits)