BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2390 (sun) DE:SUN PROTEIN (FMU PROTEIN)
(450 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75137 sun protein (fmu protein) PAB2390 - Pyrococcus abyss... 906 0.0
pir||C71102 probable fmu protein - Pyrococcus horikoshii >gi|325... 844 0.0
gi|11499905 fmu and fmv protein [Archaeoglobus fulgidus] >gi|744... 354 1e-96
pir||D75033 probable proliferating-cell nucleolar antigen p120 P... 204 2e-51
pir||G71135 probable fmu protein - Pyrococcus horikoshii >gi|325... 199 5e-50
dbj|BAB06226.1| (AP001515) unknown conserved protein [Bacillus h... 175 1e-42
gi|11499621 proliferating-cell nucleolar antigen P120, putative ... 169 7e-41
pir||A75030 probable proliferating-cell nucleolar antigen p120 P... 167 2e-40
sp|P94464|SUN_BACSU SUN PROTEIN >gi|7429452|pir||E69878 RNA-bind... 165 8e-40
pir||G71215 probable nucleolar protein - Pyrococcus horikoshii >... 163 3e-39
pir||T40814 probable nucleolar protein-NOL1-NOP2-sun family - fi... 159 5e-38
gb|AAA36398.1| (M32110) proliferating cell nuclear protein P120 ... 159 6e-38
gi|5453792 nucleolar protein 1 (120kD) [Homo sapiens] >gi|117174... 159 6e-38
gi|11436286 nucleolar protein 1 (120kD) [Homo sapiens] 159 6e-38
pir||G75121 nucleolar protein PAB0523 - Pyrococcus abyssi (strai... 157 2e-37
pir||A48998 nucleolar protein p120 - mouse (fragment) 157 2e-37
pir||A72245 sun protein - Thermotoga maritima (strain MSB8) >gi|... 153 3e-36
pir||A72478 probable fmu protein APE2465 - Aeropyrum pernix (str... 153 4e-36
dbj|BAB01410.1| (AP000375) contains similarity to SUN and FMU pr... 151 1e-35
pir||T33803 hypothetical protein W07E6.1 - Caenorhabditis elegan... 151 2e-35
pir||H71009 probable proliferating-cell nucleolar protein p120 -... 149 7e-35
sp|P72943|SUN_SYNY3 SUN PROTEIN (FMU PROTEIN) >gi|7429453|pir||S... 148 2e-34
gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog... 143 3e-33
pir||B75183 probable proliferating-cell nucleolar antigen p120 P... 143 5e-33
gb|AAF58504.1| (AE003822) CG8545 gene product [Drosophila melano... 142 7e-33
pir||F83643 conserved hypothetical protein PA0017 [imported] - P... 142 7e-33
dbj|BAB08657.1| (AB026659) nucleolar protein-like [Arabidopsis t... 141 1e-32
pir||G71030 probable nucleolar protein - Pyrococcus horikoshii >... 138 2e-31
sp|Q60343|Y026_METJA HYPOTHETICAL PROTEIN MJ0026 >gi|2127710|pir... 134 2e-30
pir||C64945 probable rRNA methylase yebU - Escherichia coli >gi|... 134 3e-30
sp|P76273|YEBU_ECOLI HYPOTHETICAL 53.2 KD PROTEIN IN PRC-PRPA IN... 134 3e-30
sp|P44788|SUN_HAEIN SUN PROTEIN (FMU PROTEIN) >gi|1074459|pir||F... 133 4e-30
sp|P45679|SUN_COXBU SUN PROTEIN (FMU PROTEIN) 132 1e-29
sp|P36929|SUN_ECOLI SUN PROTEIN (FMU PROTEIN) >gi|7445095|pir||D... 132 1e-29
gb|AAA58086.1| (U18997) we have one ORF, ECFMT has fmu and fmv [... 131 1e-29
pir||A82193 Sun/nucleolar protein family protein VC1502 [importe... 131 1e-29
gi|6324268 90-kDa protein, located in nucleolus, that is homolog... 131 2e-29
emb|CAA58502.1| (X83512) Yna1p [Saccharomyces cerevisiae] 131 2e-29
gi|11498459 proliferating-cell nucleolar antigen P120, putative ... 130 3e-29
pir||A82744 conserved hypothetical protein XF0928 [imported] - X... 125 7e-28
pir||C72748 probable sun protein APE0514 - Aeropyrum pernix (str... 124 2e-27
pir||G82372 sun protein VC0044 [imported] - Vibrio cholerae (gro... 121 2e-26
pir||B81236 16S RNA methyltransferase NMB0112 [imported] - Neiss... 120 4e-26
pir||T08926 hypothetical protein T15N24.50 - Arabidopsis thalian... 120 4e-26
pir||G82009 SUN homolog NMA0162 [imported] - Neisseria meningiti... 118 1e-25
pir||B81093 fmu and fmv protein, probable NMB1351 [imported] - N... 117 2e-25
gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus] 116 5e-25
pir||F81848 SUN-family protein NMA1563 [imported] - Neisseria me... 115 8e-25
pir||I40649 hypothetical protein 265 - Coxiella burnetii >gi|511... 114 2e-24
pir||C81412 NOL1/NOP2/sun family protein Cj0636 [imported] - Cam... 111 2e-23
dbj|BAA31227.1| (D86411) Fmv [Vibrio alginolyticus] 109 5e-23
gb|AAF14354.1|AF113138_1 (AF113138) nucleolar protein Nop2 [Erem... 109 5e-23
emb|CAB76894.1| (AL159139) hypothetical protein SCL6.29c [Strept... 109 5e-23
sp|P71675|YE07_MYCTU HYPOTHETICAL 48.5 KDA PROTEIN RV1407 >gi|74... 109 6e-23
gb|AAG19031.1| (AE005002) proliferating-cell nucleolar antigen; ... 106 7e-22
emb|CAA54370.1| (X77091) fmv [Escherichia coli] 102 1e-20
gb|AAF51875.1| (AE003599) CG11109 gene product [Drosophila melan... 102 1e-20
emb|CAA10711.1| (AJ132604) sunL protein [Lactococcus lactis] 101 1e-20
gb|AAF73608.1| (AE002350) Nol1/Nop2/Sun family protein [Chlamydi... 100 3e-20
pir||F72048 RNA methyltransferase - Chlamydophila pneumoniae (st... 98 3e-19
emb|CAB70100.1| (AL132949) contains similarity to Pfam domain: P... 98 3e-19
emb|CAB70101.1| (AL132949) contains similarity to Pfam domain: P... 98 3e-19
pir||A71500 probable RNA methyltransferase - Chlamydia trachomat... 97 5e-19
gi|8922322 hypothetical protein FLJ10267 [Homo sapiens] >gi|7022... 95 2e-18
pir||C72710 probable fmu protein APE1098 - Aeropyrum pernix (str... 94 2e-18
gi|11419358 hypothetical protein FLJ10267 [Homo sapiens] 91 3e-17
gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus] 87 4e-16
gb|AAF55642.1| (AE003725) CG5558 gene product [alt 1] [Drosophil... 82 2e-14
pir||F75306 probable sun protein - Deinococcus radiodurans (stra... 81 2e-14
gb|AAF55643.1| (AE003725) CG5558 gene product [alt 2] [Drosophil... 81 2e-14
gi|6319447 Probable proliferating-cell nucleolar antigen (human ... 80 7e-14
gi|6324306 Ynl022cp [Saccharomyces cerevisiae] >gi|1730712|sp|P5... 75 2e-12
gb|AAD22359.1|AC006592_16 (AC006592) unknown protein [Arabidopsi... 74 3e-12
emb|CAA21831.1| (AL033125) 1-evidence=predicted by content~1-met... 74 4e-12
gb|AAF45921.1| (AE003430) EG:EG0007.9 gene product [Drosophila m... 74 4e-12
pir||T38517 hypothetical protein SPAC2C4.06c - fission yeast (S... 73 7e-12
gb|AAF51412.1| (AE003587) CG4749 gene product [Drosophila melano... 72 1e-11
emb|CAC05734.1| (AL391744) putative methyltransferase possibily ... 71 3e-11
emb|CAA71351.1| (Y10304) sun [Bacillus subtilis] 70 4e-11
>pir||G75137 sun protein (fmu protein) PAB2390 - Pyrococcus abyssi (strain
Orsay) >gi|5458327|emb|CAB49816.1| (AJ248285) SUN
PROTEIN (FMU PROTEIN) [Pyrococcus abyssi]
Length = 450
Score = 906 bits (2317), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MELFYRVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKW 60
MELFYRVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKW
Sbjct: 1 MELFYRVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKW 60
Query: 61 RAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT 120
RAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT
Sbjct: 61 RAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT 120
Query: 121 KAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLL 180
KAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLL
Sbjct: 121 KAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLL 180
Query: 181 LSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRK 240
LSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRK
Sbjct: 181 LSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRK 240
Query: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLM 300
GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLM
Sbjct: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLM 300
Query: 301 KMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI 360
KMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI
Sbjct: 301 KMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI 360
Query: 361 KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDK 420
KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDK
Sbjct: 361 KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDK 420
Query: 421 GFLEIGEKVFRAWTHKHDCNSFFIAKLRKP 450
GFLEIGEKVFRAWTHKHDCNSFFIAKLRKP
Sbjct: 421 GFLEIGEKVFRAWTHKHDCNSFFIAKLRKP 450
>pir||C71102 probable fmu protein - Pyrococcus horikoshii
>gi|3257494|dbj|BAA30177.1| (AP000004) 450aa long
hypothetical fmu protein [Pyrococcus horikoshii]
Length = 450
Score = 844 bits (2157), Expect = 0.0
Identities = 401/450 (89%), Positives = 440/450 (97%)
Query: 1 MELFYRVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKW 60
MELFYRV+LHEIIADALTL+EE+ELSSKHALER+F+RVEGKDKETARGIAHAYVFEIEKW
Sbjct: 1 MELFYRVTLHEIIADALTLIEERELSSKHALERVFRRVEGKDKETARGIAHAYVFEIEKW 60
Query: 61 RAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT 120
RAKIDFILNSVL+GS+VEDLD YLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT
Sbjct: 61 RAKIDFILNSVLKGSRVEDLDTYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT 120
Query: 121 KAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLL 180
+AKFANA+LREVEKFNVE+AL++LKE+DRIEWLSVRFSHPRWYVEY++ +LGYDE VRLL
Sbjct: 121 RAKFANAVLREVEKFNVERALKRLKERDRIEWLSVRFSHPRWYVEYVVKLLGYDETVRLL 180
Query: 181 LSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRK 240
LSNLRPQRYY+RVNTLK D+D+V+RYLEENGVRV+LTPVDDVLKVL+YEKPVT+LEW+RK
Sbjct: 181 LSNLRPQRYYIRVNTLKVDVDRVKRYLEENGVRVSLTPVDDVLKVLEYEKPVTKLEWYRK 240
Query: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLM 300
GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMEN+GEIVAVDYSYDRL+
Sbjct: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRLI 300
Query: 301 KMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI 360
KM+ERMK+LGVKNVKLVHADGQS+ ++E F+KIILDAPCSSSGTYRQFPEVKWRF+EEKI
Sbjct: 301 KMRERMKKLGVKNVKLVHADGQSYTEKEKFDKIILDAPCSSSGTYRQFPEVKWRFNEEKI 360
Query: 361 KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDK 420
KRVISVQRNML+NAYRNL GGEMTYSTCSIRIDENE+NV+FA+EKG E+VDYPFEWGDK
Sbjct: 361 KRVISVQRNMLINAYRNLAGGGEMTYSTCSIRIDENEQNVLFAIEKGLELVDYPFEWGDK 420
Query: 421 GFLEIGEKVFRAWTHKHDCNSFFIAKLRKP 450
GFLEIG+KVFR WTHKHDCNSFFIAKLRKP
Sbjct: 421 GFLEIGDKVFRTWTHKHDCNSFFIAKLRKP 450
>gi|11499905 fmu and fmv protein [Archaeoglobus fulgidus]
>gi|7445109|pir||D69540 fmu and fmv protein homolog -
Archaeoglobus fulgidus >gi|2648195|gb|AAB88932.1|
(AE000944) fmu and fmv protein [Archaeoglobus fulgidus]
Length = 437
Score = 354 bits (899), Expect = 1e-96
Identities = 200/450 (44%), Positives = 281/450 (62%), Gaps = 32/450 (7%)
Query: 7 VSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDF 66
+ EI A L VE +S K A++++ + K RG HAY E K ID+
Sbjct: 11 IPTQEIAAKVLAEVERSRISVKSAVQKLAGGFDYK----VRGSVHAYSVETLKRLNAIDY 66
Query: 67 ILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFAN 126
L S L+ K + LD + NLLRI +EMK+KGV+PA+ATDS VR+ +E+ KA N
Sbjct: 67 FLKSTLK--KFDGLDPFTRNLLRIAVYEMKYKGVHPALATDSAVRIARER---GKASLVN 121
Query: 127 AILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRP 186
A+LR+VEK +++ + R++ LS+ + HP W+V+Y I++LG D A++L+ +NLR
Sbjct: 122 AVLRKVEKLDIQA-------EGRLKELSLTYFHPEWFVKYAIELLGEDGALKLMKANLRN 174
Query: 187 QRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQ 246
YVRVN LK ++ VR YLE+NGV + T +D+V +V YEK L+WH +G +VIQ
Sbjct: 175 PPTYVRVNELKGSVESVREYLEKNGVILEETFLDEVFRVKGYEKHPASLDWHSEGKYVIQ 234
Query: 247 DLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERM 306
DLAS +V+H LNP PG+ V+DLAAAPG KT H A LM+N+G IVAVD S R+ +M+ ++
Sbjct: 235 DLASCFVSHALNPSPGDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMRSKL 294
Query: 307 KRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISV 366
K+LGVKNV++ DG F +K ++DAPCSS+G Y P VKW FDE K + + V
Sbjct: 295 KQLGVKNVEIKLGDGCVFECEA--DKALVDAPCSSTGNYASQPNVKWTFDERKFRATMKV 352
Query: 367 QRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDKGFLEI- 425
QR M+ NA LR+ E+ Y+TCSI +ENEEN+ L+ G +I+ P +G +G E
Sbjct: 353 QRKMIANA---LRNADEVVYATCSITFEENEENL---LKTGAKILPLPSPFG-RGVREFR 405
Query: 426 ------GEKVFRAWTHKHDCNSFFIAKLRK 449
EKV R++ H HD FFI+KL +
Sbjct: 406 GVLFRDWEKVVRSFPHLHDTAGFFISKLTR 435
>pir||D75033 probable proliferating-cell nucleolar antigen p120 PAB0830 -
Pyrococcus abyssi (strain Orsay)
>gi|5458674|emb|CAB50161.1| (AJ248287)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 449
Score = 204 bits (513), Expect = 2e-51
Identities = 120/311 (38%), Positives = 184/311 (58%), Gaps = 16/311 (5%)
Query: 146 EKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRR 205
E + +EW ++ P W++E + +LG + N R + VRVNTLKA++++V
Sbjct: 147 ELEELEW---KYLAPAWFIERVRKILGNETEEFFRAVNERQEWISVRVNTLKANVEEVIE 203
Query: 206 YLEENGVRVALTPVDDVLKVLDYEKPVT--RLEWHRKGYFVIQDLASAYVAHVLNPEPGE 263
L +GV V + + V +L + P + KG ++Q+ ASA + +LNP+PGE
Sbjct: 204 ELRNDGVEVVRS--ERVPTILKIKGPYNFDSSKAFNKGKIIVQEEASAVASLILNPQPGE 261
Query: 264 RVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQ- 322
++DLAAAPG KT H A LM+NKG+I A D R+ ++KE + R+G+K VK + DG+
Sbjct: 262 VIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDKTRMKRLKEFVNRMGIKIVKPIIKDGRK 321
Query: 323 --SFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRS 380
+ E ++++LDAPC+SSGT + PE++WR E KIK + +QR +L +A + ++
Sbjct: 322 APEILGEEIADRVLLDAPCTSSGTIGKNPELRWRLRESKIKEMAQLQRELLESAAKLVKP 381
Query: 381 GGEMTYSTCSIRIDENEENVIFAL--EKGFEIVDYPFEWGDKGFLEIGEKVFRAWTHKHD 438
GG + Y+TCS+ +ENEENV + L + F++V + D GFL E RAW H+H
Sbjct: 382 GGLLLYTTCSLFTEENEENVKWFLNNHQEFKLVHLNSPY-DPGFL---EGTMRAWPHRHS 437
Query: 439 CNSFFIAKLRK 449
FF A LRK
Sbjct: 438 TIGFFYALLRK 448
>pir||G71135 probable fmu protein - Pyrococcus horikoshii
>gi|3257262|dbj|BAA29945.1| (AP000003) 450aa long
hypothetical fmu protein [Pyrococcus horikoshii]
Length = 450
Score = 199 bits (501), Expect = 5e-50
Identities = 122/313 (38%), Positives = 185/313 (58%), Gaps = 11/313 (3%)
Query: 143 KLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDK 202
K K+ +E L ++ P W +E + +LG + N R + +RVNTLKA++++
Sbjct: 141 KPNPKNELEELEWKYLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEE 200
Query: 203 VRRYLEENGVRVALTP-VDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEP 261
V LEE+GV V + V +LK+ T ++ +G ++Q+ ASA + VL+P+P
Sbjct: 201 VIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFN-EGKIIVQEEASAVASIVLDPKP 259
Query: 262 GERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADG 321
GE V+DLAAAPG KT H A LM+NKG+I A D R+ ++K+ +KR+G+K VK + D
Sbjct: 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA 319
Query: 322 Q---SFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL 378
+ I E +K++LDAPC+SSGT + PE++WR E+KI + +QR +L +A R +
Sbjct: 320 RKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV 379
Query: 379 RSGGEMTYSTCSIRIDENEENVIFAL--EKGFEIVDYPFEWGDKGFLEIGEKVFRAWTHK 436
+ GG + Y+TCSI +ENE+N+ + L F++V + D GFL E RAW H+
Sbjct: 380 KPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPY-DPGFL---EGTMRAWPHR 435
Query: 437 HDCNSFFIAKLRK 449
H FF A L K
Sbjct: 436 HSTIGFFYALLEK 448
>dbj|BAB06226.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 450
Score = 175 bits (438), Expect = 1e-42
Identities = 125/452 (27%), Positives = 223/452 (48%), Gaps = 18/452 (3%)
Query: 8 SLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFI 67
S+ E+ + L +E+ + S L + K+ + ++ G+ V+ + + +D+
Sbjct: 5 SVREVALETLVQIEKSQAYSNLLLNQKIKQANLEPRDI--GLLTELVYGTVQRQKTLDYY 62
Query: 68 LNSVLRGSKVEDLDLYLANLLRIGTFEMKFKG-VNPAIATDSVVRVVKEKFDLTKAKFAN 126
+ S + K L+ ++ LLR+ +++ + V P V + K++ + N
Sbjct: 63 IASFVAKGK-RKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKKRGHKGISGLVN 121
Query: 127 AILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRP 186
+LR +++ + +D+++ L+V +S+P W V+ ID G +E V + L P
Sbjct: 122 GVLRSMQRQGMPPFAAI---EDKVKRLAVEYSYPEWLVKRWIDQYGEEETVSICEEMLLP 178
Query: 187 QRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQ 246
+ RVN K +++ LE GV+ + D V+D + +T + G IQ
Sbjct: 179 PKVTARVNVRKRTVEEALERLEHEGVQATNGVLSDDAIVVD-KGTITSTRLFQDGELTIQ 237
Query: 247 DLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERM 306
D +S VA + P PGER+LD AAPG K+ H A M+ +G IV++D ++ ++E+
Sbjct: 238 DESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEEQA 297
Query: 307 KRLGVKNVKLVHADGQS----FIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKR 362
KRLG+ N+K D + F D E F++I++DAPCS G R+ P++KW E +K
Sbjct: 298 KRLGLDNIKAQTLDARKAREVFAD-EPFDRILVDAPCSGLGVIRRKPDIKWTKREADMKA 356
Query: 363 VISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK--GFEIVDYPFE---W 417
+ +VQ ++L + + ++ GG + YSTC+I ENE+ + +E F I D +
Sbjct: 357 IRNVQLDILSSVAKLVKPGGLLIYSTCTIDQLENEQVIAEFMEAHGEFSIDDTVLDRLPA 416
Query: 418 GDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
+ I E + H + FFI L+K
Sbjct: 417 AVQATCNIREGMVTILPHHFGTDGFFITCLKK 448
>gi|11499621 proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus] >gi|7445096|pir||F69504 proliferating-cell
nucleolar antigen P120-like protein - Archaeoglobus
fulgidus >gi|2648496|gb|AAB89215.1| (AE000962)
proliferating-cell nucleolar antigen P120, putative
[Archaeoglobus fulgidus]
Length = 324
Score = 169 bits (423), Expect = 7e-41
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 10/304 (3%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L+V++ + + V + G DE ++ + Y+R+NTLK D + LE G
Sbjct: 15 LAVKYGYDEFIVRRWLHFFG-DETEDIIRAFEEGIPKYIRINTLKIDEKGLLERLESRGF 73
Query: 213 RVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAP 272
++ T V +V++ + + GY+ + D +S L P+PGE V+DLAA+P
Sbjct: 74 KLKKTEVPYCFEVVEEPYSIGATPEYLMGYYYVMDKSSCIPPLALEPKPGEVVVDLAASP 133
Query: 273 GSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDREGF-- 330
G KT + LMENKG ++AV+ +RL + + + R+G NV +++ DG+ + G
Sbjct: 134 GGKTTFLSMLMENKGAVIAVEPQKERLQPLIDNINRMGAMNVAVINVDGRR-VPAMGIKA 192
Query: 331 EKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCS 390
++++LDAPC+ G + P K +E I S+QR ++L A+ L+ GG M YSTCS
Sbjct: 193 DRVLLDAPCTGEGIIHKDPSRKTDRGKEDILFCSSLQRELVLAAFDCLKEGGVMVYSTCS 252
Query: 391 IRIDENEENVIFALEKGFEIVDYPFEWGDKGFLEIG-----EKVFRAWTHKHDCNSFFIA 445
+ +ENE V F LE+ +V+ EWGD+ G K R + H+H C+ FF+A
Sbjct: 253 LTPEENEFVVDFLLERRKGVVE-EIEWGDEALALPGVKNEVSKARRFYPHRHQCSGFFVA 311
Query: 446 KLRK 449
++RK
Sbjct: 312 RIRK 315
>pir||A75030 probable proliferating-cell nucleolar antigen p120 PAB1173 -
Pyrococcus abyssi (strain Orsay)
>gi|5459193|emb|CAB50679.1| (AJ248288)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 385
Score = 167 bits (419), Expect = 2e-40
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 8/220 (3%)
Query: 232 VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVA 291
++ L+ KGYF Q L S VL P+ E ++D+AAAPG KT H A L++N+GEI+A
Sbjct: 169 LSELKSFEKGYFYPQSLPSMVATRVLEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEIIA 228
Query: 292 VDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDRE-GFEKIILDAPCSSSGTYRQFPE 350
+D S +RL KM+E ++RLGVKNVKL+ D ++ D +KI+LDAPC++ G P+
Sbjct: 229 IDKSKNRLKKMEENLRRLGVKNVKLIQMDARNLPDLGLKADKILLDAPCTALGVR---PK 285
Query: 351 VKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEI 410
+ + I+ QR + A ++LR GG + YSTC++ +ENE NV F L+KG ++
Sbjct: 286 LWEERTPKHIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKKGMKL 345
Query: 411 VDYPFEWGDKGFLEIG-EKVFRAWTHKHDCNSFFIAKLRK 449
D G G IG +KV R + HKH+ FFIAKLRK
Sbjct: 346 EDQQIFIGSPG---IGLDKVQRFYPHKHNTQGFFIAKLRK 382
>sp|P94464|SUN_BACSU SUN PROTEIN >gi|7429452|pir||E69878 RNA-binding Sun protein homolog
yloM - Bacillus subtilis >gi|2337803|emb|CAA74264.1|
(Y13937) putative Fmu protein [Bacillus subtilis]
>gi|2633946|emb|CAB13447.1| (Z99112) alternate gene
name: sun~similar to RNA-binding Sun protein [Bacillus
subtilis]
Length = 447
Score = 165 bits (414), Expect = 8e-40
Identities = 128/464 (27%), Positives = 232/464 (49%), Gaps = 41/464 (8%)
Query: 6 RVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKID 65
+ S+ +I +AL +E+ + S L+ + K E D+ RG+ V+ + + +D
Sbjct: 3 KTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQN--RGLLTELVYGTLQNKIALD 60
Query: 66 FILNSVLRGSKVEDLDLYLANLLRIGTFEMKF-KGVNPAIATDSVVRVVKEKFDLTKAKF 124
++L + +K + + ++ LLR+ ++M++ + + A V + K + A F
Sbjct: 61 YMLKPFI--NKPQKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASF 118
Query: 125 ANAILREVEKFNVEK--ALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLS 182
N +LR +++ V A+ +D + L+ SHP W V+ D G++ A ++
Sbjct: 119 VNGVLRSIQREGVPSFDAI-----EDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRI 173
Query: 183 NLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPV-DDVLKVLDYEKPVTRLEWHRKG 241
+L P + +RVN +KAD ++ + G+ V + +D +K+L + + + + G
Sbjct: 174 HLIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLL--KGTIAGTHFFQNG 231
Query: 242 YFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMK 301
IQD +S VA L+P+ E VLD AAPG K+ H A LM+NKG + ++D ++
Sbjct: 232 EVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKL 291
Query: 302 MKERMKRLGVKNVKLVHAD-------GQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWR 354
+KE RLG + ++HA+ G++F + E F++I++DAPCS G R+ P++K+
Sbjct: 292 IKEAADRLG---LTIIHAETMDARKAGETF-ENEQFDRILVDAPCSGFGVIRRKPDMKYT 347
Query: 355 FDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYP 414
+ R+ +Q ++L ++ GG + YSTC++ EN+E VI A I ++P
Sbjct: 348 KKPDDSARLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDE-VIHAF-----IQEHP 401
Query: 415 -FEWGDKGFLEIGEKV--------FRAWTHKHDCNSFFIAKLRK 449
FE + EKV + H + FFI +RK
Sbjct: 402 DFEPDLSLEKRLPEKVRPFVRDGRLQILPHYFGTDGFFICSMRK 445
>pir||G71215 probable nucleolar protein - Pyrococcus horikoshii
>gi|3258435|dbj|BAA31118.1| (AP000007) 389aa long
hypothetical nucleolar protein [Pyrococcus horikoshii]
Length = 389
Score = 163 bits (409), Expect = 3e-39
Identities = 97/220 (44%), Positives = 132/220 (59%), Gaps = 8/220 (3%)
Query: 232 VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVA 291
++ L+ KGYF Q L S A VL P+ + ++D+AAAPG KT H A L+ENKGEI+A
Sbjct: 172 LSELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEIIA 231
Query: 292 VDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDRE-GFEKIILDAPCSSSGTYRQFPE 350
+D S +RL KM+E +KRLGVKNVKLV D + D +KI+LDAPC++ G P+
Sbjct: 232 IDKSKNRLRKMEENIKRLGVKNVKLVQMDARKLPDLGIKADKILLDAPCTALGVR---PK 288
Query: 351 VKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEI 410
+ + I+ QR + A ++LR GG + YSTC++ +ENE NV F + KG ++
Sbjct: 289 LWEERTLKHIEATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEGNVKFMIRKGMKL 348
Query: 411 VDYPFEWGDKGFLEIG-EKVFRAWTHKHDCNSFFIAKLRK 449
+ G G IG KV R + HKH FFIAKLRK
Sbjct: 349 EEQSIFIGSPG---IGMNKVQRFYPHKHLTQGFFIAKLRK 385
>pir||T40814 probable nucleolar protein-NOL1-NOP2-sun family - fission yeast
(Schizosaccharomyces pombe) >gi|3810844|emb|CAA21805.1|
(AL032684) putative nucleolar protein; NOL1/NOP2/sun
family [Schizosaccharomyces pombe]
Length = 608
Score = 159 bits (399), Expect = 5e-38
Identities = 99/313 (31%), Positives = 166/313 (52%), Gaps = 22/313 (7%)
Query: 157 FSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVAL 216
+ + R+ E + ++ EAV +N P+ +R NTLK ++ + L GV L
Sbjct: 233 YGYSRFLAEKLFELFSVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVN--L 290
Query: 217 TPVDDV----LKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAP 272
P+ L+V + + P+ + G++++Q +S L P+P ER+LD+++AP
Sbjct: 291 EPIGKWSKVGLQVFESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAP 350
Query: 273 GSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDR--EGF 330
G K + AAL +N G I A D + R + + RLGV+N + + DG+ F + GF
Sbjct: 351 GGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIGGF 410
Query: 331 EKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL----RSGGEMTY 386
++++LDAPCS +G + VK E + +QR +LL+A ++ ++GG + Y
Sbjct: 411 DRVLLDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVY 470
Query: 387 STCSIRIDENEENVIFALEK--GFEIVDYPFEWGDKGFLEIGEKVF--------RAWTHK 436
STCSI +DE+E + +AL+K ++V E+G +GF EK F R + H
Sbjct: 471 STCSITVDEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHV 530
Query: 437 HDCNSFFIAKLRK 449
H+ + FF+AKL+K
Sbjct: 531 HNIDGFFVAKLKK 543
>gb|AAA36398.1| (M32110) proliferating cell nuclear protein P120 [Homo sapiens]
Length = 869
Score = 159 bits (398), Expect = 6e-38
Identities = 104/315 (33%), Positives = 167/315 (53%), Gaps = 20/315 (6%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L++ +S+ + + ++D+ E V L +N P+ +R NTLK + + L GV
Sbjct: 288 LAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGV 347
Query: 213 RVALTPVDDVLK----VLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
L P+ K V D P+ + G++++Q +S L P+ ER+LD+
Sbjct: 348 N--LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDM 405
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-R 327
APG KT + A LM+N G I+A D + +RL + + RLGV N + H DG+ F
Sbjct: 406 CCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVV 465
Query: 328 EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL----RSGGE 383
GF++++LDAPCS +G + P VK DE+ I R +Q+ +LL+A ++ ++GG
Sbjct: 466 GGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGY 525
Query: 384 MTYSTCSIRIDENEENVIFALEK-GFEIVDYPFEWGDKGFLEIGEKVF--------RAWT 434
+ Y TCSI ++ENE V +AL+K +V ++G +GF E+ F R +
Sbjct: 526 LVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYP 585
Query: 435 HKHDCNSFFIAKLRK 449
H H+ + FFIAK +K
Sbjct: 586 HTHNMDGFFIAKFKK 600
>gi|5453792 nucleolar protein 1 (120kD) [Homo sapiens]
>gi|1171747|sp|P46087|NOL1_HUMAN PROLIFERATING-CELL
NUCLEOLAR ANTIGEN P120 (PROLIFERATION-ASSOCIATED
NUCLEOLAR PROTEIN P120) >gi|482505|pir||A48168
proliferating-cell nucleolar antigen P120 - human
>gi|287723|emb|CAA39119.1| (X55504) P120 antigen [Homo
sapiens]
Length = 855
Score = 159 bits (398), Expect = 6e-38
Identities = 104/315 (33%), Positives = 167/315 (53%), Gaps = 20/315 (6%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L++ +S+ + + ++D+ E V L +N P+ +R NTLK + + L GV
Sbjct: 274 LAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGV 333
Query: 213 RVALTPVDDVLK----VLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
L P+ K V D P+ + G++++Q +S L P+ ER+LD+
Sbjct: 334 N--LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDM 391
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-R 327
APG KT + A LM+N G I+A D + +RL + + RLGV N + H DG+ F
Sbjct: 392 CCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVV 451
Query: 328 EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL----RSGGE 383
GF++++LDAPCS +G + P VK DE+ I R +Q+ +LL+A ++ ++GG
Sbjct: 452 GGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGY 511
Query: 384 MTYSTCSIRIDENEENVIFALEK-GFEIVDYPFEWGDKGFLEIGEKVF--------RAWT 434
+ Y TCSI ++ENE V +AL+K +V ++G +GF E+ F R +
Sbjct: 512 LVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYP 571
Query: 435 HKHDCNSFFIAKLRK 449
H H+ + FFIAK +K
Sbjct: 572 HTHNMDGFFIAKFKK 586
>gi|11436286 nucleolar protein 1 (120kD) [Homo sapiens]
Length = 812
Score = 159 bits (398), Expect = 6e-38
Identities = 104/315 (33%), Positives = 167/315 (53%), Gaps = 20/315 (6%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L++ +S+ + + ++D+ E V L +N P+ +R NTLK + + L GV
Sbjct: 274 LAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGV 333
Query: 213 RVALTPVDDVLK----VLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
L P+ K V D P+ + G++++Q +S L P+ ER+LD+
Sbjct: 334 N--LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDM 391
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-R 327
APG KT + A LM+N G I+A D + +RL + + RLGV N + H DG+ F
Sbjct: 392 CCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVV 451
Query: 328 EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL----RSGGE 383
GF++++LDAPCS +G + P VK DE+ I R +Q+ +LL+A ++ ++GG
Sbjct: 452 GGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGY 511
Query: 384 MTYSTCSIRIDENEENVIFALEK-GFEIVDYPFEWGDKGFLEIGEKVF--------RAWT 434
+ Y TCSI ++ENE V +AL+K +V ++G +GF E+ F R +
Sbjct: 512 LVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYP 571
Query: 435 HKHDCNSFFIAKLRK 449
H H+ + FFIAK +K
Sbjct: 572 HTHNMDGFFIAKFKK 586
>pir||G75121 nucleolar protein PAB0523 - Pyrococcus abyssi (strain Orsay)
>gi|5458199|emb|CAB49688.1| (AJ248285) NUCLEOLAR PROTEIN
[Pyrococcus abyssi]
Length = 311
Score = 157 bits (394), Expect = 2e-37
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 16/308 (5%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L++ +S P + E + G + A+R+ + +P R+NTLK + + + L + G
Sbjct: 8 LTLGYSKP--FAERYYQLWG-ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGF 64
Query: 213 RVALTPVDDVLKVLDYEK-PVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAA 271
+ P L E +T + G IQ+ +S Y L+P+PGE V D+AAA
Sbjct: 65 QFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAA 124
Query: 272 PGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDREG-- 329
PG KT + A LMENKG I A D DRL + + + RLGV NV L H+ +ID+ G
Sbjct: 125 PGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHS-SSLYIDQLGIE 183
Query: 330 FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTC 389
F+KI+LDAPC+ SGT + PE KW + IK +Q ++ A L+ GG + YSTC
Sbjct: 184 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTC 243
Query: 390 SIRIDENEENVIFALEKGFEIVDYPFEWGDKGF-----LEIGEKVFRA---WTHKHDCNS 441
S+ +ENE + + LE F++ P ++G+ +E+ +++ +A + H +
Sbjct: 244 SLEPEENEFVIQWVLE-NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSG 302
Query: 442 FFIAKLRK 449
FF+AK+RK
Sbjct: 303 FFVAKIRK 310
>pir||A48998 nucleolar protein p120 - mouse (fragment)
Length = 783
Score = 157 bits (393), Expect = 2e-37
Identities = 102/315 (32%), Positives = 166/315 (52%), Gaps = 20/315 (6%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L+ +S+ + + ++++ E + L +N P+ +R NTLK + + L GV
Sbjct: 220 LATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGV 279
Query: 213 RVALTPVDDVLK----VLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
L P+ K V D P+ + G++++Q +S L P+ ER+LD+
Sbjct: 280 N--LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDM 337
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-R 327
APG KT + A LM+N G I+A D + DRL + + RLGV N + H DG+ F
Sbjct: 338 CCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVV 397
Query: 328 EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL----RSGGE 383
GF++++LDAPCS +G + P VK DE+ I+R +Q+ +LL+A ++ ++GG
Sbjct: 398 GGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGY 457
Query: 384 MTYSTCSIRIDENEENVIFALEK-GFEIVDYPFEWGDKGFLEIGEKVF--------RAWT 434
+ Y TCSI ++ENE V +AL+K +V ++G +GF + F R +
Sbjct: 458 LVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLRSTRRFYP 517
Query: 435 HKHDCNSFFIAKLRK 449
H H+ + FFIAK +K
Sbjct: 518 HTHNMDGFFIAKFKK 532
>pir||A72245 sun protein - Thermotoga maritima (strain MSB8)
>gi|4982078|gb|AAD36579.1|AE001799_11 (AE001799) sun
protein [Thermotoga maritima]
Length = 431
Score = 153 bits (384), Expect = 3e-36
Identities = 120/447 (26%), Positives = 215/447 (47%), Gaps = 52/447 (11%)
Query: 21 EEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVLRGSKVEDL 80
E+++ S+ ++ + ++ +D+ + + V+ + + +D+ +N +L K +D+
Sbjct: 17 EKEKFISREDVDSVLSFLDDRDRRFFKEL----VWGVVRKEELLDWYINQLL---KKKDI 69
Query: 81 DLYLANLLRIGTFEMKFKGVNP--AIATDSVVRVVKEKFDLTKAKFANAILREVEKFNVE 138
+ LR+G +++ F P A +++V V E F K NA+LR +
Sbjct: 70 PPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNENFK----KLVNAVLRRLRTVPEP 125
Query: 139 KALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKA 198
K L + +SHP W V Y L + +R++ N P +RVN+L A
Sbjct: 126 KELHLV------------YSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSLAA 173
Query: 199 DIDKVRRYLEENGVRVAL---TPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAH 255
++V + L E G P +++ L P+ G +Q +S V
Sbjct: 174 TKEEVIKILAEEGTEAVPGKHAPFSLIVRKLGV--PMNDSRVINDGLASVQGESSQLVPF 231
Query: 256 VLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVK 315
+ PG RVLD AAPG KT A LM+++G+I+AVD S +++ +++ KRL + +++
Sbjct: 232 FMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIE 291
Query: 316 LVHADGQSFID--REGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLN 373
AD + + ++ F+++++DAPC+S GT R PEV R ++E ++ +Q M+
Sbjct: 292 TKIADAERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRMVQQ 351
Query: 374 AYRNLRSGGEMTYSTCSIRIDENEENV--IFALEKGFEIVDY-----PFE----WGDKGF 422
A++ L GG + YSTC++ +EN E V +K E++D FE W GF
Sbjct: 352 AWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDVEVIDIRDKMKEFEVEGIWDGYGF 411
Query: 423 LEIGEKVFRAWTHKHDCNSFFIAKLRK 449
L + ++ F+I+ LRK
Sbjct: 412 LMLPDETI---------TPFYISVLRK 429
>pir||A72478 probable fmu protein APE2465 - Aeropyrum pernix (strain K1)
>gi|5106170|dbj|BAA81481.1| (AP000064) 420aa long
hypothetical fmu protein [Aeropyrum pernix]
Length = 420
Score = 153 bits (383), Expect = 4e-36
Identities = 104/286 (36%), Positives = 145/286 (50%), Gaps = 13/286 (4%)
Query: 172 GYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKP 231
G DE +LL + RP VRVNTLKA D+V + + +G+ P D V V+ Y P
Sbjct: 138 GDDELEKLLDAINRPPVNSVRVNTLKASFDEVYKAIRSSGLYA--WPSDRVEGVIRYRGP 195
Query: 232 V--TRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEI 289
T +G V QD +SA A +L P PGE VLD+ AAPG KT H A L + I
Sbjct: 196 FNDTLARLLAEGKIVPQDESSAAAAPLLQPRPGEIVLDMCAAPGGKTTHLAELSRLQARI 255
Query: 290 VAVDYSYDRLMKMKERMK----RLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTY 345
+ D +DRL +MK ++ V VK A+ + R +KI+LD PCS++G
Sbjct: 256 LGFDIYWDRLRRMKTLVEATASEAAVAVVKADAANAPKILGRGSVDKILLDPPCSTTGGL 315
Query: 346 RQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALE 405
+ + +WR KI + +Q+ +L A ++ GG + Y+ CSI +E E+ V+ ALE
Sbjct: 316 HKNVDARWRLTRRKIMELQELQKTLLDAAVETVKPGGLILYTVCSILAEEGEDVVLHALE 375
Query: 406 K--GFEIVDYPFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
K EIV + + L RAW H+H FF A LRK
Sbjct: 376 KWGNLEIVPLNGPYDESPIL---PGTMRAWPHRHGVTGFFYALLRK 418
>dbj|BAB01410.1| (AP000375) contains similarity to SUN and FMU
proteins~gene_id:MJG19.14 [Arabidopsis thaliana]
Length = 531
Score = 151 bits (378), Expect = 1e-35
Identities = 109/400 (27%), Positives = 194/400 (48%), Gaps = 12/400 (3%)
Query: 59 KWRAKIDFILNSVLRGSKV-EDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKF 117
+WR +D ++ S+ + +++ L +LRIG +E+ + + P D VR+ K
Sbjct: 129 RWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVAL 188
Query: 118 DLTKAKFANAILREVEKFNVEKALR--KLKEKDRIEW--LSVRFSHPRWYVEYIIDMLGY 173
F N ILR++ + AL K++ DR + L+ SHP W V + LG
Sbjct: 189 RPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGL 248
Query: 174 DEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVA---LTPVDDVLKVLDYEK 230
DEA +L++ N + +R NT + DI + N ++V +++ +++ +
Sbjct: 249 DEATKLMIWNNNDPGFSLRANTGR-DITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQ 307
Query: 231 PVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIV 290
V + ++G +QD ++ + V+ P+PGER++D AAPG KT A+ ++ +G I
Sbjct: 308 TVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIY 367
Query: 291 AVDYSYDRLMKMKERMKRLGVKN-VKLVHADGQSFIDRE--GFEKIILDAPCSSSGTYRQ 347
A+D + RL + E K V + +H+D + F + ++K++LDAPCS G +
Sbjct: 368 AMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSK 427
Query: 348 FPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKG 407
+++W E + + +Q +L +A + ++ GG + YSTCSI +ENE V L +
Sbjct: 428 RADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRH 487
Query: 408 FEIVDYPFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKL 447
E P + F + KH + F A+L
Sbjct: 488 PEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARL 527
>pir||T33803 hypothetical protein W07E6.1 - Caenorhabditis elegans (fragment)
>gi|3886025|gb|AAC78177.1| (AF106576) similar to the
nucleolar protein NOF1/NOP2 family [Caenorhabditis
elegans]
Length = 645
Score = 151 bits (377), Expect = 2e-35
Identities = 99/294 (33%), Positives = 154/294 (51%), Gaps = 21/294 (7%)
Query: 175 EAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKV----LDYEK 230
E + L +N P+ +R N+LK + + L G+ V P D KV D +
Sbjct: 217 ELLEFLEANDNPRPVTIRANSLKVKRRDLAKNLINRGMNV--DPAADWTKVGLVVYDSQV 274
Query: 231 PVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIV 290
PV + G+++IQ L S L P+PG+RVLD+ +APG KT H AALM+N G +
Sbjct: 275 PVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGVLF 334
Query: 291 AVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSF--IDREGFEKIILDAPCSSSGTYRQF 348
A D ++ R + + RLGV N + + G+ F I GF++I+LDAPCS +G +
Sbjct: 335 ANDANFTRCRAIIGNLHRLGVNNTVVCNLGGEEFSKIRPNGFDRILLDAPCSGTGVIWKD 394
Query: 349 PEVKWRFDEEKIKRVISVQRNMLLNAY----RNLRSGGEMTYSTCSIRIDENEENVIFAL 404
VK D + ++R ++QR ++L+A N +GG + YSTCS+ ++ENE V F L
Sbjct: 395 QSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLVYSTCSVLVEENEAVVNFLL 454
Query: 405 EKGF-EIVDYPFEWGDKGFLEIGEKVF--------RAWTHKHDCNSFFIAKLRK 449
E+ E+V G G+ + F R + H H+ + F++AK++K
Sbjct: 455 ERRHCELVPTGLSIGVDGYTRFRDYRFHPSLSMTKRYYPHVHNIDGFYVAKIKK 508
>pir||H71009 probable proliferating-cell nucleolar protein p120 - Pyrococcus
horikoshii >gi|3257797|dbj|BAA30480.1| (AP000006) 315aa
long hypothetical proliferating-cell nucleolar protein
p120 [Pyrococcus horikoshii]
Length = 315
Score = 149 bits (372), Expect = 7e-35
Identities = 100/305 (32%), Positives = 156/305 (50%), Gaps = 12/305 (3%)
Query: 155 VRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRV 214
+R + + + + + G + A+R+ + +P RVNTLK + + + L + G +
Sbjct: 12 LRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQF 70
Query: 215 ALTPVDDVLKVLDYEK-PVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPG 273
P L E +T G IQ+ +S Y L+P+PGE V D+AAAPG
Sbjct: 71 KRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPG 130
Query: 274 SKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-REGFEK 332
KT + A LM N G I A D +RL + + + RLGV NV L H+ + F+K
Sbjct: 131 GKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190
Query: 333 IILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIR 392
I+LDAPC+ SGT + PE KW + IK +Q +L L+ GG + YSTCS+
Sbjct: 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250
Query: 393 IDENEENVIFALEKGFEIVDYPFEWGDKGF-----LEIGEKV---FRAWTHKHDCNSFFI 444
+ENE + +AL+ F++ P ++G+ +E+ E++ R + H+ + FFI
Sbjct: 251 PEENEFVIQWALD-NFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFI 309
Query: 445 AKLRK 449
AK+RK
Sbjct: 310 AKIRK 314
>sp|P72943|SUN_SYNY3 SUN PROTEIN (FMU PROTEIN) >gi|7429453|pir||S74920 fmu protein -
Synechocystis sp. (strain PCC 6803)
>gi|1652035|dbj|BAA16960.1| (D90902) fmu and fmv protein
[Synechocystis sp.]
Length = 446
Score = 148 bits (369), Expect = 2e-34
Identities = 109/381 (28%), Positives = 187/381 (48%), Gaps = 26/381 (6%)
Query: 84 LANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKA-------KFANAILREVEKFN 136
L ++++G +++++ PA A V DL KA K N +LR ++
Sbjct: 76 LRRIVQLGLYQLRYLDQVPASAA------VNTGVDLAKANGLKGLSKVVNGMLRRYQR-- 127
Query: 137 VEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTL 196
E+ + + ++++I L ++S P W +E G E L + +R+N L
Sbjct: 128 AEEQGKNILDQEKIS-LGEQYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPL 186
Query: 197 KADIDKVRRYLEE-NGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAH 255
K +V + L E N A+ + L++ +T+L +G++ +QD ++ +VA
Sbjct: 187 KTSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQ 246
Query: 256 VLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVK 315
+LNP+P E + D+ AAPG KT H A LM ++G+I A D RL K+ +RLG+ ++K
Sbjct: 247 ILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTSIK 306
Query: 316 LVHAD-GQSFIDR--EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLL 372
+ D Q + E ++ +LD PCS GT + P+++WR I ++ +Q+ +L
Sbjct: 307 IWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLK 366
Query: 373 NAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEW----GDKGFLEIGEK 428
++SGG + YSTC++ ENE + L+ + PFEW G + G
Sbjct: 367 AIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTSG-- 424
Query: 429 VFRAWTHKHDCNSFFIAKLRK 449
+ H H + FFIA L+K
Sbjct: 425 MLTILPHHHHQDGFFIANLKK 445
>gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
solfataricus]
Length = 339
Score = 143 bits (358), Expect = 3e-33
Identities = 95/312 (30%), Positives = 159/312 (50%), Gaps = 15/312 (4%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLR-PQRYYVRVNTLKADIDKVRRYLEENG 211
L+ ++ + +E ++M +E + L++ P + +R NTLK D K+ + E G
Sbjct: 27 LASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEEIMLEKG 86
Query: 212 V---RVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
+V V+K + + + GY+ IQ LAS A+VLNP + VLD+
Sbjct: 87 FVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDM 146
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSF--ID 326
AAAPG KT + +M+NKG ++AV+ R+ + + RLG +NV L+ D + I+
Sbjct: 147 AAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLININ 206
Query: 327 REGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTY 386
+ F+KI+LDAPCS G ++ P +++ + ++ +Q +++ AY L+ GG + Y
Sbjct: 207 KSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDLRDFAHLQLSLIEIAYELLKKGGYIVY 266
Query: 387 STCSIRIDENEENVIFALE----KGFEIVDYP-----FEWGDKGFLEIGEKVFRAWTHKH 437
STCS+ +E+E V FA+E K + YP E+ F + R + HK
Sbjct: 267 STCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGYIEYYTTRFSNDVKNCLRFFPHKQ 326
Query: 438 DCNSFFIAKLRK 449
FF+ L+K
Sbjct: 327 GTEGFFLCLLKK 338
>pir||B75183 probable proliferating-cell nucleolar antigen p120 PAB1947 -
Pyrococcus abyssi (strain Orsay)
>gi|5458055|emb|CAB49545.1| (AJ248284)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 311
Score = 143 bits (356), Expect = 5e-33
Identities = 95/281 (33%), Positives = 148/281 (51%), Gaps = 18/281 (6%)
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVD----DVLKVLDYEKPVTRLEWHRK 240
+P R +R+NTLK ++ +++ LEE + L P+ + + Y+ +L +
Sbjct: 33 KPLRPSIRINTLKGNLKEIKALLEE---KFELEPIPWTKGEGFYIKSYDVNYGQLIEYSL 89
Query: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLM 300
G + Q+ +S VL+P+P E +LD+AAAPGSKT A MEN+G I+A D DR
Sbjct: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
Query: 301 KMKERMKRLGVKNVKLVHADGQSFIDREG-FEKIILDAPCSSSGTYRQFPEVKWRFDEEK 359
+ + R GV K+ DG F E F++++LDAPCSS G R+ + + K
Sbjct: 150 ILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGK 209
Query: 360 IKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK---GFEIVDYP-- 414
+ +Q+ ++L AY++L+ GG + YSTC++ ENEE V F L+K E V P
Sbjct: 210 VYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLK 269
Query: 415 -----FEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRKP 450
EW + + + K R +D +F+IAK+RKP
Sbjct: 270 TSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRKP 310
>gb|AAF58504.1| (AE003822) CG8545 gene product [Drosophila melanogaster]
Length = 857
Score = 142 bits (355), Expect = 7e-33
Identities = 95/315 (30%), Positives = 163/315 (51%), Gaps = 20/315 (6%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
L + +S+ + +E ++DML E + L ++ + +R NTLK + L GV
Sbjct: 291 LCLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGV 350
Query: 213 RVALTPVDDVLKV----LDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
L P+ KV + + P+ + G+++IQ +S L P+ ER+LD+
Sbjct: 351 N--LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDM 408
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-R 327
+APG K H A++M+N G + A D + DR+ + RLG+ N + DG F +
Sbjct: 409 CSAPGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIM 468
Query: 328 EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAY----RNLRSGGE 383
GF++++LDAPC+ +G + P VK E ++R ++QR +LL A +GG
Sbjct: 469 TGFDRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGY 528
Query: 384 MTYSTCSIRIDENEENVIFALEK-GFEIVDYPFEWGDKGFLEIGEKVF--------RAWT 434
+ YSTCS+ +ENE + +AL+K ++V ++G +GF + + F R +
Sbjct: 529 IVYSTCSVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFTKFRQHRFHPSLNLTKRYYP 588
Query: 435 HKHDCNSFFIAKLRK 449
H H+ + F++AKL+K
Sbjct: 589 HTHNMDGFYVAKLKK 603
>pir||F83643 conserved hypothetical protein PA0017 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945836|gb|AAG03407.1|AE004441_8 (AE004441)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 434
Score = 142 bits (355), Expect = 7e-33
Identities = 116/411 (28%), Positives = 184/411 (44%), Gaps = 20/411 (4%)
Query: 16 ALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVLRGS 75
AL V S AL +V +D RG+ F +W+ ++ + +L+
Sbjct: 10 ALAAVLAGRASLSGALPPQLDKVAPRD----RGLTQELAFGAARWQPRLQALAARLLQKP 65
Query: 76 -KVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFANAILREVEK 134
K D D++ LL IG +++ + + P A V D K +A +L V +
Sbjct: 66 FKAADTDIHA--LLLIGLYQLLYTRIPPHAAIGETVGCA----DKLKKGWAKGVLNAVLR 119
Query: 135 FNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVN 194
+ L E DR S R HPRW ++ + ++ L +N +RVN
Sbjct: 120 RAQREGETLLAEVDRDP--SARLGHPRWLLK-ALKQAWPEQLDALCAANNAHPPMTLRVN 176
Query: 195 TLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVA 254
+ D L E G++ L + V L +G +QD A+ A
Sbjct: 177 RRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQLAA 236
Query: 255 HVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNV 314
L PG+RVLD APG KT H E+VAVD RL++++E ++RLG++
Sbjct: 237 EQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGLQ-A 295
Query: 315 KLVHADGQS---FIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNML 371
LV AD ++ + D + F++I+LDAPCS++G R+ P++K E I + +Q +L
Sbjct: 296 SLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELL 355
Query: 372 LNAYRNLRSGGEMTYSTCSIRIDENEENV--IFALEKGFEIVDYPFEWGDK 420
+ L GG + Y+TCS+ EN +++ A G +D P WG K
Sbjct: 356 DALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGARELDLPGPWGMK 406
>dbj|BAB08657.1| (AB026659) nucleolar protein-like [Arabidopsis thaliana]
Length = 682
Score = 141 bits (353), Expect = 1e-32
Identities = 100/341 (29%), Positives = 168/341 (48%), Gaps = 22/341 (6%)
Query: 129 LREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQR 188
L+ + F + RK + L + + + + +++M E + L+ + + +
Sbjct: 225 LKNFKAFRPKDTTRKACVEQLKADLGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRP 284
Query: 189 YYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKV----LDYEKPVTRLEWHRKGYFV 244
+R NTLK + L GV L P+ KV D + P+ + GY++
Sbjct: 285 TSIRTNTLKTRRRDLADVLLNRGVN--LDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYM 342
Query: 245 IQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKE 304
+Q +S L P ER++D+AAAPG KT + AALM+N G I A + RL +
Sbjct: 343 LQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEMKVPRLKSLTA 402
Query: 305 RMKRLGVKNVKLVHADGQSF---IDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIK 361
+ R+GV N + + DG+ + + ++++LDAPCS +G + VK ++IK
Sbjct: 403 NLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSGTGIISKDESVKITKTMDEIK 462
Query: 362 RVISVQRNMLLNAY----RNLRSGGEMTYSTCSIRIDENEENVIFALEK-GFEIVDYPFE 416
+ +Q+ +LL A N ++GG + YSTCSI + ENE + +AL+K ++V +
Sbjct: 463 KFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVTCGLD 522
Query: 417 WGDKGFLEIGE--------KVFRAWTHKHDCNSFFIAKLRK 449
+G KGF E K R + H H+ + FF+AKL+K
Sbjct: 523 FGRKGFTRFREHRFQPSLDKTRRFYPHVHNMDGFFVAKLKK 563
>pir||G71030 probable nucleolar protein - Pyrococcus horikoshii
>gi|3257964|dbj|BAA30647.1| (AP000006) 312aa long
hypothetical nucleolar protein [Pyrococcus horikoshii]
Length = 312
Score = 138 bits (343), Expect = 2e-31
Identities = 94/279 (33%), Positives = 146/279 (51%), Gaps = 14/279 (5%)
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGV--RVALTPVDDVLKVLDYEKPVTRLEWHRKGY 242
+P R +R+NTLK ++++++ LEE R+ T + + Y L + G
Sbjct: 33 KPLRPSIRINTLKGKLNEIKKLLEEKFELERIPWTKGEGFY-INSYSVNYGELIEYSLGL 91
Query: 243 FVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKM 302
+ Q+ +S VL+P+PGE +LD+AAAPGSKT A MEN G I+A D DR +
Sbjct: 92 IIPQEASSMIPPVVLDPKPGELILDMAAAPGSKTTQIAQYMENDGCIIANDAKRDRANIL 151
Query: 303 KERMKRLGVKNVKLVHADGQSFIDREG-FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIK 361
+ R GV K+ DG + E F++I+LDAPCSS G R+ + + K+
Sbjct: 152 IANLTRAGVLIAKVTVRDGAHYAKYEDTFDRILLDAPCSSVGMIRKNFKFAKTWSLGKVY 211
Query: 362 RVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK---GFEIVDYP---- 414
+Q+ ++L AYR L+ GG + YSTC++ ENEE V + L+K + ++ P
Sbjct: 212 YHSRLQKKLILAAYRALKPGGVLVYSTCTVDPLENEEVVDYLLQKTDAKLKKINLPIKST 271
Query: 415 ---FEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRKP 450
EW + + E +K R +D +F+IAK+ KP
Sbjct: 272 EPVLEWEGRRYSEELKKTIRIHPQDNDTEAFYIAKIIKP 310
>sp|Q60343|Y026_METJA HYPOTHETICAL PROTEIN MJ0026 >gi|2127710|pir||B64303 120K
proliferating-cell nucleolar antigen homolog -
Methanococcus jannaschii >gi|1592257|gb|AAB98007.1|
(U67461) proliferating-cell nucleolar antigen,
FMU/NOL1/NOP2 family [Methanococcus jannaschii]
Length = 274
Score = 134 bits (335), Expect = 2e-30
Identities = 89/266 (33%), Positives = 139/266 (51%), Gaps = 10/266 (3%)
Query: 190 YVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLA 249
++RVNTLK + + +++ LE GV + T +D +V + + GY++ Q ++
Sbjct: 12 FIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSIS 71
Query: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRL 309
S VLNP + +LD+ AAPG KT H A LM+NKG IVAV+ S R +K + R+
Sbjct: 72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM 131
Query: 310 GVKNVKLVHADGQSFID-----REGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVI 364
GV N +++AD + + D F+KI+LDAPCS + + EE IK
Sbjct: 132 GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGN----IIKDKNRNVSEEDIKYCS 187
Query: 365 SVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDKGFLE 424
Q+ ++ L+ GE+ YSTCS+ ++ENEE + + L+K ++ + + +
Sbjct: 188 LRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANEFKGIN 247
Query: 425 IGEKVFRAWTHKHDCNS-FFIAKLRK 449
I E + N FFIAKLRK
Sbjct: 248 IKEGYIKGTLRVFPPNEPFFIAKLRK 273
>pir||C64945 probable rRNA methylase yebU - Escherichia coli
>gi|1736482|dbj|BAA15648.1| (D90827) Proliferating-cell
nucleolar antigen P120 (Proliferation-associated
nucleolar protein P120). [Escherichia coli]
>gi|1788140|gb|AAC74905.1| (AE000278) putative nucleolar
proteins [Escherichia coli K12]
Length = 481
Score = 134 bits (333), Expect = 3e-30
Identities = 91/280 (32%), Positives = 140/280 (49%), Gaps = 19/280 (6%)
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEK------PVTRLEWH 238
RP R +RVNTLK + + G LTP+ + E+ P+ H
Sbjct: 37 RPLRRSIRVNTLKISVADFLQLTAPYGW--TLTPIPWCEEGFWIERDNEDALPLGSTAEH 94
Query: 239 RKGYFVIQDLASAYVAHVLNPEPG--ERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSY 296
G F IQ+ +S L + +RV+D+AAAPGSKT +A M N+G I+A ++S
Sbjct: 95 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSA 154
Query: 297 DRLMKMKERMKRLGVKNVKLVHADGQSF--IDREGFEKIILDAPCSSSGTYRQFPEVKWR 354
R+ + + R G+ NV L H DG+ F E F+ I+LDAPCS G R+ P+
Sbjct: 155 SRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 214
Query: 355 FDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDY- 413
+ E + + + QR ++ +A+ LR GG + YSTC++ +ENE ++ E + V++
Sbjct: 215 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFL 274
Query: 414 ----PFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
F +K E E + +DC FF+A+LRK
Sbjct: 275 PLGDLFPGANKALTE--EGFLHVFPQIYDCEGFFVARLRK 312
>sp|P76273|YEBU_ECOLI HYPOTHETICAL 53.2 KD PROTEIN IN PRC-PRPA INTERGENIC REGION
Length = 479
Score = 134 bits (333), Expect = 3e-30
Identities = 91/280 (32%), Positives = 140/280 (49%), Gaps = 19/280 (6%)
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEK------PVTRLEWH 238
RP R +RVNTLK + + G LTP+ + E+ P+ H
Sbjct: 35 RPLRRSIRVNTLKISVADFLQLTAPYGW--TLTPIPWCEEGFWIERDNEDALPLGSTAEH 92
Query: 239 RKGYFVIQDLASAYVAHVLNPEPG--ERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSY 296
G F IQ+ +S L + +RV+D+AAAPGSKT +A M N+G I+A ++S
Sbjct: 93 LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSA 152
Query: 297 DRLMKMKERMKRLGVKNVKLVHADGQSF--IDREGFEKIILDAPCSSSGTYRQFPEVKWR 354
R+ + + R G+ NV L H DG+ F E F+ I+LDAPCS G R+ P+
Sbjct: 153 SRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 212
Query: 355 FDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDY- 413
+ E + + + QR ++ +A+ LR GG + YSTC++ +ENE ++ E + V++
Sbjct: 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFL 272
Query: 414 ----PFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
F +K E E + +DC FF+A+LRK
Sbjct: 273 PLGDLFPGANKALTE--EGFLHVFPQIYDCEGFFVARLRK 310
>sp|P44788|SUN_HAEIN SUN PROTEIN (FMU PROTEIN) >gi|1074459|pir||F64155 hypothetical
protein HI0624 - Haemophilus influenzae (strain Rd KW20)
>gi|1573620|gb|AAC22284.1| (U32745) sun protein (sun)
[Haemophilus influenzae Rd]
Length = 451
Score = 133 bits (331), Expect = 4e-30
Identities = 105/379 (27%), Positives = 180/379 (46%), Gaps = 41/379 (10%)
Query: 87 LLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFANAILREVEKFNVEKALRKLKE 146
LL +G +++ + V A D VV K + NA+LR R L+E
Sbjct: 95 LLLVGLYQLLYMRVPAHAAVDEVVNATKSLKSDSFRGLVNAVLR-----------RFLRE 143
Query: 147 KDRI------EWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADI 200
+D I W ++ HP W+V + Y ++ +N + ++RVN+ K +
Sbjct: 144 QDEILAIIDKNWQTL---HPEWFVNKL--KKAYPNWREIIEANNQKPPMWLRVNSQKNAL 198
Query: 201 DKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPE 260
+ R LEE GV + + L LD V +L +G +QDL++ + A +L P+
Sbjct: 199 ETYRTLLEEQGVSSKTSHHPNAL-CLDIPIAVQKLPHFEEGAVTVQDLSAQWAATLLEPK 257
Query: 261 PGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHAD 320
E +LD AAPG KT H L + ++A+D RL +++E ++RL + + +V D
Sbjct: 258 NEEWILDACAAPGGKTTHILELAP-QANVIALDVESHRLKRVEENLERLNQQAI-VVCGD 315
Query: 321 GQS---FIDREG-----FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLL 372
++ G F++I+LDAPCS++G R+ P++KW E I +++ +Q+ +L
Sbjct: 316 ASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILS 375
Query: 373 NAYRNLRSGGEMTYSTCSIRIDENEENV--IFALEKGFEIVDYPFEWGDKGFLEIGEKVF 430
+ L+ G + Y+TCS+ +EN E + E++ PF DK + F
Sbjct: 376 ALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHADAELLSLPFS-DDKSAVG-----F 429
Query: 431 RAWTHKHDCNSFFIAKLRK 449
+ + + F+ AKL K
Sbjct: 430 QFIPQPNSGDGFYYAKLLK 448
>sp|P45679|SUN_COXBU SUN PROTEIN (FMU PROTEIN)
Length = 430
Score = 132 bits (328), Expect = 1e-29
Identities = 101/356 (28%), Positives = 183/356 (51%), Gaps = 35/356 (9%)
Query: 59 KWRAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFD 118
+W K+ I +L + + D D + L+ G +++ + I T ++V +
Sbjct: 44 RWYFKLKLIAEKLLH-APLRDKDHDIFCLILTGFYQLNYLN----IPTHTIVNQTVGAAE 98
Query: 119 LTKAKFANAILREVEKFNVEKALRKLKEKDRI-----EWLSVRFSHPRWYVEYIIDMLGY 173
+ K +A ++ ++ + R + EKD + + + +++HP W++++I
Sbjct: 99 ILKKPWAKGLINKLLR-------RFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPD 151
Query: 174 DEAVRLLLSNLRPQRYYVRVNTLKADIDKVRR--YLEE-NGVRVALTPVDDVLKVLDYEK 230
L+ +N RP TL+ ++ K+ R YLE + ++ P+D + + EK
Sbjct: 152 HWESILIANNARPPM------TLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEK 205
Query: 231 P--VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGE 288
P V +L +GY IQD A + A++L E + VLD AAPGSKT H + +
Sbjct: 206 PCSVHQLPGFNEGYCYIQDAAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKT 265
Query: 289 IVAVDYSYDRLMKMKERMKRLGVK--NVKLVHADGQSFIDR----EGFEKIILDAPCSSS 342
+VA+D + RL ++KE + RLG++ +++ + AD S ID+ E F++I+LDAPCS++
Sbjct: 266 LVAIDNNKQRLNRIKENITRLGLRQEHLQCLLAD-VSQIDQWSSGELFDRILLDAPCSAT 324
Query: 343 GTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEE 398
G R+ P++K I + + +L + L++GG + YSTCS+ DENE+
Sbjct: 325 GVIRRHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEK 380
>sp|P36929|SUN_ECOLI SUN PROTEIN (FMU PROTEIN) >gi|7445095|pir||D65121 fmu protein -
Escherichia coli >gi|1772512|emb|CAA71359.1| (Y10307)
sun [Escherichia coli] >gi|2367212|gb|AAC76314.1|
(AE000407) orf, hypothetical protein [Escherichia coli
K12]
Length = 429
Score = 132 bits (328), Expect = 1e-29
Identities = 103/406 (25%), Positives = 200/406 (48%), Gaps = 26/406 (6%)
Query: 8 SLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFI 67
+L + A A+ V E+ S + L + ++V KDK + + F + + +++D++
Sbjct: 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELC----FGVLRTLSQLDWL 61
Query: 68 LNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNP-AIATDSVVRVVKEKFDLTKAKFAN 126
+N ++ + + L+ +G +++ + + P A ++V + K K N
Sbjct: 62 INKLM-ARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKG-LIN 119
Query: 127 AILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLL--SNL 184
+LR+ ++ E+ L + D R+ HP W ++ + Y E + ++ +N
Sbjct: 120 GVLRQFQR-QQEELLAEFNASD------ARYLHPSWLLKRL--QKAYPEQWQSIVEANNQ 170
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVR-VALTPVDDVLKVLDYEKPVTRLEWHRKGYF 243
RP + +R+N D L+E G++ D ++ L+ PV L G+
Sbjct: 171 RPPMW-LRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVR-LETPAPVHALPGFEDGWV 228
Query: 244 VIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMK 303
+QD ++ L P+ GE +LDL AAPG KT H + + ++VAVD RL ++
Sbjct: 229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVY 287
Query: 304 ERMKRLGVKNVKLVHADGQ---SFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI 360
+ +KRLG+K + DG+ + + F++I+LDAPCS++G R+ P++KW + I
Sbjct: 288 DNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDI 346
Query: 361 KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK 406
+ +Q +L + +L++GG + Y+TCS+ +EN + L++
Sbjct: 347 PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392
>gb|AAA58086.1| (U18997) we have one ORF, ECFMT has fmu and fmv [Escherichia coli]
Length = 386
Score = 131 bits (327), Expect = 1e-29
Identities = 102/396 (25%), Positives = 196/396 (48%), Gaps = 26/396 (6%)
Query: 8 SLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFI 67
+L + A A+ V E+ S + L + ++V KDK + + F + + +++D++
Sbjct: 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELC----FGVLRTLSQLDWL 61
Query: 68 LNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNP-AIATDSVVRVVKEKFDLTKAKFAN 126
+N ++ + + L+ +G +++ + + P A ++V + K K N
Sbjct: 62 INKLM-ARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKG-LIN 119
Query: 127 AILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLL--SNL 184
+LR+ ++ E+ L + D R+ HP W ++ + Y E + ++ +N
Sbjct: 120 GVLRQFQR-QQEELLAEFNASD------ARYLHPSWLLKRL--QKAYPEQWQSIVEANNQ 170
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVR-VALTPVDDVLKVLDYEKPVTRLEWHRKGYF 243
RP + +R+N D L+E G++ D ++ L+ PV L G+
Sbjct: 171 RPPMW-LRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVR-LETPAPVHALPGFEDGWV 228
Query: 244 VIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMK 303
+QD ++ L P+ GE +LDL AAPG KT H + + ++VAVD RL ++
Sbjct: 229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVY 287
Query: 304 ERMKRLGVKNVKLVHADGQ---SFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI 360
+ +KRLG+K + DG+ + + F++I+LDAPCS++G R+ P++KW + I
Sbjct: 288 DNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDI 346
Query: 361 KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDEN 396
+ +Q +L + +L++GG + Y+TCS+ +EN
Sbjct: 347 PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN 382
>pir||A82193 Sun/nucleolar protein family protein VC1502 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656005|gb|AAF94657.1| (AE004228) Sun/nucleolar
protein family protein [Vibrio cholerae]
Length = 503
Score = 131 bits (327), Expect = 1e-29
Identities = 88/278 (31%), Positives = 146/278 (51%), Gaps = 16/278 (5%)
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEK---PVTRLEWHRKG 241
RP R +RVNTLK + + + E ++ P + +D ++ P+ H G
Sbjct: 64 RPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAG 123
Query: 242 YFVIQDLASAYVAHVL--NPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 299
F IQ+ +S L + VLD+AAAPGSKT AALM+N+G +VA ++S R+
Sbjct: 124 LFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRV 183
Query: 300 MKMKERMKRLGVKNVKLVHADGQSFID--REGFEKIILDAPCSSSGTYRQFPEVKWRFDE 357
+ ++R G++N L + DG F E F+ +++DAPCS GT R+ P+ +
Sbjct: 184 KVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSL 243
Query: 358 EKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK------GFEIV 411
E I+ + + Q+ ++ +A++ L+ GG + YSTC++ +EN++ V + L++ FE +
Sbjct: 244 ESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQ-VCWHLKQTYGDAVSFESL 302
Query: 412 DYPFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
FE E E + +DC FF+AK+RK
Sbjct: 303 GNLFEHASLALTE--EGFLHIFPQMYDCEGFFVAKIRK 338
>gi|6324268 90-kDa protein, located in nucleolus, that is homologous to a human
proliferation-associated nucleolar protein, p120; Nop2p
[Saccharomyces cerevisiae]
>gi|730166|sp|P40991|NOP2_YEAST NUCLEOLAR PROTEIN NOP2
>gi|1078161|pir||A55188 nucleolar protein NOP2 - yeast
(Saccharomyces cerevisiae) >gi|576442|emb|CAA57979.1|
(X82656) Nop2p [Saccharomyces cerevisiae]
>gi|1098483|gb|AAA99650.1| (U12141) Ynl2428p
[Saccharomyces cerevisiae] >gi|1301934|emb|CAA95934.1|
(Z71337) ORF YNL061w [Saccharomyces cerevisiae]
>gi|1093321|prf||2103264A nuclear protein [Saccharomyces
cerevisiae]
Length = 618
Score = 131 bits (326), Expect = 2e-29
Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 21/312 (6%)
Query: 157 FSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVAL 216
F + + E + ++ EA+ +N + +R NTLK + + L GV L
Sbjct: 239 FGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVN--L 296
Query: 217 TPVDDVLKV----LDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAP 272
P+ KV D + P+ + G++++Q +S L+P ER+LD+AAAP
Sbjct: 297 QPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAP 356
Query: 273 GSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-REGFE 331
G KT + +A+M+N G + A D + R + + RLG N + + D + F GF+
Sbjct: 357 GGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFD 416
Query: 332 KIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYR----NLRSGGEMTYS 387
+I+LDAPCS +G + VK E+ ++ +Q+ +LL+A N + GG + YS
Sbjct: 417 RILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYS 476
Query: 388 TCSIRIDENEENVIFALEK--GFEIVDYPFEWGDKGFLEIGEKVF--------RAWTHKH 437
TCS+ ++E+E + +AL K ++VD G + F K F R + H +
Sbjct: 477 TCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTY 536
Query: 438 DCNSFFIAKLRK 449
+ + FF+AK +K
Sbjct: 537 NVDGFFVAKFQK 548
>emb|CAA58502.1| (X83512) Yna1p [Saccharomyces cerevisiae]
Length = 473
Score = 131 bits (326), Expect = 2e-29
Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 21/312 (6%)
Query: 157 FSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVAL 216
F + + E + ++ EA+ +N + +R NTLK + + L GV L
Sbjct: 94 FGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVN--L 151
Query: 217 TPVDDVLKV----LDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAP 272
P+ KV D + P+ + G++++Q +S L+P ER+LD+AAAP
Sbjct: 152 QPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAP 211
Query: 273 GSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-REGFE 331
G KT + +A+M+N G + A D + R + + RLG N + + D + F GF+
Sbjct: 212 GGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFD 271
Query: 332 KIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYR----NLRSGGEMTYS 387
+I+LDAPCS +G + VK E+ ++ +Q+ +LL+A N + GG + YS
Sbjct: 272 RILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYS 331
Query: 388 TCSIRIDENEENVIFALEK--GFEIVDYPFEWGDKGFLEIGEKVF--------RAWTHKH 437
TCS+ ++E+E + +AL K ++VD G + F K F R + H +
Sbjct: 332 TCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTY 391
Query: 438 DCNSFFIAKLRK 449
+ + FF+AK +K
Sbjct: 392 NVDGFFVAKFQK 403
>gi|11498459 proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus] >gi|7445110|pir||E69356 proliferating-cell
nucleolar antigen P120 homolog - Archaeoglobus fulgidus
>gi|2649749|gb|AAB90385.1| (AE001045) proliferating-cell
nucleolar antigen P120, putative [Archaeoglobus
fulgidus]
Length = 317
Score = 130 bits (324), Expect = 3e-29
Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 24/309 (7%)
Query: 156 RFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV-RV 214
R +P Y E ++ + G DE R ++ +P R VRVNTLKA++D+V L+E RV
Sbjct: 19 RLINPELY-ERLLKIDGSDEFFRYMV---KPLRVSVRVNTLKAEVDEVVENLKELITGRV 74
Query: 215 ALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGS 274
L + ++ +R+ H+ G Q+ AS V+ EP VLD+AA+PG+
Sbjct: 75 PWCEEGFYLSIDEF----SRIPEHQLGLIFSQEAASMIPPLVMELEPKMTVLDIAASPGA 130
Query: 275 KTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSF-IDREGFEKI 333
KT A ++N+G IVA D + R+ + ++R GV K+ DG+ F R F+ +
Sbjct: 131 KTTQIAQYLQNEGCIVANDVKHSRINILISNLQRCGVLIAKVTVKDGRYFGRFRNRFDAV 190
Query: 334 ILDAPCSSSGTYRQ-FPEVK-WRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSI 391
++DAPCS+ G R+ + ++ W+ + + +Q+++L+ AY+ ++ GG + YSTC++
Sbjct: 191 LVDAPCSNMGMIRKNYRNIRLWKMRD--CYGLSKLQKSLLMAAYKAVKPGGVVVYSTCTL 248
Query: 392 RIDENEENVIFAL---EKGFEIVDYPF-------EWGDKGFLEIGEKVFRAWTHKHDCNS 441
ENEE V + L + E V+ P ++ K + E K R D
Sbjct: 249 EPIENEEVVDYILRNTDAEIEEVNLPVKGVEPFTKFDGKEYSEEVRKCLRLHPQSSDTEG 308
Query: 442 FFIAKLRKP 450
FF+AKLRKP
Sbjct: 309 FFVAKLRKP 317
>pir||A82744 conserved hypothetical protein XF0928 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105851|gb|AAF83738.1|AE003932_2 (AE003932)
conserved hypothetical protein [Xylella fastidiosa]
Length = 421
Score = 125 bits (312), Expect = 7e-28
Identities = 110/393 (27%), Positives = 178/393 (44%), Gaps = 31/393 (7%)
Query: 12 IIADALTLVEEKELSSKHALERIFKRVEG-KDKETARGIAHAYVFEIEKWRAKI-DFILN 69
+ A L LV ++ S K L +E +D+ I A + + A + ++
Sbjct: 2 VAARVLALVVDQGRSLKTELAAALPTLEDVRDRALVEAICFAVLRRRPVYEAALTQWLAR 61
Query: 70 SVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129
+ RG D L LL +G ++ V P A + V + +A F NA+L
Sbjct: 62 PLGRG------DAQLRGLLMVGFAQLDVLKVPPYAALSATVDACRVLGWPHRASFVNAVL 115
Query: 130 REVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRY 189
R ++ +R+ +S + PRW E I G + A + ++L+P
Sbjct: 116 RRAQR-------------ERLPVVSSDAAWPRWLAERIRADWG-ELAEAIFDASLKPAPM 161
Query: 190 YVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLA 249
++RVN D + L+ G+ + + LD PV +L + G +QDL+
Sbjct: 162 WLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLS 221
Query: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEI--VAVDYSYDRLMKMKERMK 307
+ VA +L+P P RVLD AAPG K H L+E + A+D RL ++ E
Sbjct: 222 AQQVAALLSPAPHARVLDACAAPGGKAAH---LLERAPTLCLTALDVDMQRLRRVAETCD 278
Query: 308 RLGVKNVKLVHADGQSFI---DREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVI 364
R+ VK +L AD D E F+ ++LDAPCS++G R+ P+V E + ++
Sbjct: 279 RIHVK-ARLCVADATDLAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLL 337
Query: 365 SVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE 397
++Q +L +R LR GG + Y TCS+ EN+
Sbjct: 338 NIQSRLLDACWRTLRPGGVLVYVTCSVLRAENQ 370
>pir||C72748 probable sun protein APE0514 - Aeropyrum pernix (strain K1)
>gi|5104163|dbj|BAA79479.1| (AP000059) 352aa long
hypothetical sun protein [Aeropyrum pernix]
Length = 352
Score = 124 bits (309), Expect = 2e-27
Identities = 96/338 (28%), Positives = 155/338 (45%), Gaps = 15/338 (4%)
Query: 127 AILREVEKFNVE-KALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLR 185
A+ R F E +A+ LK E L+ + VE I +LG +EA L+ N +
Sbjct: 13 AVARASRMFRREDEAIASLKPSRTAERLAGEAGYSPVLVEKYIQILGEEEARELIAWNDK 72
Query: 186 PQRYYVRVNTLKADIDKVRRYLEENGVRVALTP-VDDVLKVLDYEKPVTRLEWHRKGYFV 244
P +R N ++ L + G V+ P + ++VL+ V + +G +
Sbjct: 73 PLPETIRCNDFLIPCSELESMLSQKGFLVSRIPWLPHGIEVLEQPIRVGATHEYMQGLYY 132
Query: 245 IQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKE 304
IQD S VA++L EPGE VLD+AAAPG K+ H L + +VAVD S R+ ++
Sbjct: 133 IQDPGSMLVAYLLGVEPGETVLDMAAAPGGKSTHIQQLSRDSTILVAVDISRRRMRALRS 192
Query: 305 RMKRLGVKNVKLVHADGQSFIDREG---FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIK 361
M+R+G ++ V AD + G ++++LDAP + G R+ PE + + +
Sbjct: 193 HMQRMGFRSYVAVRADSRLLPRIAGTGWADRVMLDAPSTGEGIIRKDPERRRSRSQADVL 252
Query: 362 RVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENV--IFALEKGFEIVDYPFEWGD 419
R+ +Q +L A R G + Y+ CS +E E V + L E+ G
Sbjct: 253 RIHYLQLELLYTAVDLARPGAPILYAACSTSPEEGELVVSRLLELRSDVEVERLESPVGS 312
Query: 420 KG---FLEI-----GEKVFRAWTHKHDCNSFFIAKLRK 449
G +L + + R W +H FFI ++R+
Sbjct: 313 PGVDSYLGVDISGEARRCLRLWPQRHGTEGFFICRVRR 350
>pir||G82372 sun protein VC0044 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654437|gb|AAF93222.1| (AE004095) sun
protein [Vibrio cholerae]
Length = 434
Score = 121 bits (300), Expect = 2e-26
Identities = 100/411 (24%), Positives = 193/411 (46%), Gaps = 25/411 (6%)
Query: 3 LFYRVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRA 62
L + +++ A AL V + S +AL +++ +D + I + + ++ + +
Sbjct: 5 LGFIMNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLES 64
Query: 63 KIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKA 122
++ L G ++ L+ +G +++ F + A V ++
Sbjct: 65 -----ISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLR 119
Query: 123 KFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLS 182
NA+LR ++ + E + D + R+ HP W ++ + + ++ +++ +
Sbjct: 120 GLINAVLRNYQR-DQEGLDAQATSHD-----AGRYGHPGWLLKLLKESYP-EQWQQIVEA 172
Query: 183 NLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKP--VTRLEWHRK 240
N ++RVN + + LE+ G+ TP L E P V +L +
Sbjct: 173 NNSKAPMWLRVNHQHHTRAEYQALLEQAGI--VTTPHAQAEDALCLETPCDVHQLPGFAE 230
Query: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMEN--KGEIVAVDYSYDR 298
G+ +QD A+ L P+ GE +LD AAPG KT H ++E + ++VA+D R
Sbjct: 231 GWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAH---ILERTPESQVVAIDCDETR 287
Query: 299 LMKMKERMKRLGVKNVKLVHADG---QSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRF 355
L +++E ++RL + +++ D Q + E F++I+LDAPCS++G R+ P++KW
Sbjct: 288 LKRVRENLQRLEL-TAQVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLR 346
Query: 356 DEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK 406
+ I + +QR +L ++ L+ GG + Y+TCSI EN V LE+
Sbjct: 347 RADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLER 397
>pir||B81236 16S RNA methyltransferase NMB0112 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225328|gb|AAF40571.1| (AE002370) 16S RNA
methyltransferase [Neisseria meningitidis MC58]
Length = 419
Score = 120 bits (297), Expect = 4e-26
Identities = 83/297 (27%), Positives = 146/297 (48%), Gaps = 20/297 (6%)
Query: 105 ATDSVVRVVKEKFDLTKAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYV 164
A +S+ ++ + ++ FANA+LR + +K + K+ D + + P W+V
Sbjct: 101 AVESIAKIGRGQY----RSFANAVLRRFLRER-DKLVASCKKDD-----VAKHNLPLWWV 150
Query: 165 EYIIDMLG-YDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVL 223
Y+ + + + L + P +RVN + + L G+ A +D+
Sbjct: 151 AYLKNHYPKHWHNIAAALQSHPPMT--LRVNRRHGNAESYLEKLVAEGI--AAKALDEYA 206
Query: 224 KVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALM 283
L+ PV RL G +QD + A++LNP+ GER+LD AAPG KT H L
Sbjct: 207 VTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELA 266
Query: 284 ENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQ---SFIDREGFEKIILDAPCS 340
+ + + A+D RL ++++ + RLG + AD Q ++ D + F+ ++ D PC+
Sbjct: 267 DCR--VTALDIDAGRLKRVEDNIARLGFQTASTACADAQDLSAWYDGKPFDAVLADVPCT 324
Query: 341 SSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE 397
+SG R+ P+VKW + Q +L ++ L+SGG M +TCS+ ++EN+
Sbjct: 325 ASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEEND 381
>pir||T08926 hypothetical protein T15N24.50 - Arabidopsis thaliana
>gi|7228247|emb|CAB77061.1| (AL078465) putative protein
[Arabidopsis thaliana] >gi|7269512|emb|CAB79515.1|
(AL161565) putative protein [Arabidopsis thaliana]
Length = 626
Score = 120 bits (297), Expect = 4e-26
Identities = 90/311 (28%), Positives = 148/311 (46%), Gaps = 36/311 (11%)
Query: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
LS + + + + +I+M E + L+ + + + +R NTLK + L GV
Sbjct: 232 LSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDLADILLNRGV 291
Query: 213 RVALTPVDDVLKV----LDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDL 268
L P+ KV D + P+ + G++++Q +S L P ERV+D+
Sbjct: 292 N--LDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDM 349
Query: 269 AAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDRE 328
AAAPG KT + AALM+N G I A + RL + + R+GV N + + DG+ I ++
Sbjct: 350 AAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGREVISKD 409
Query: 329 GFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAY----RNLRSGGEM 384
VK + IK+ +Q+ ++L A N ++GG +
Sbjct: 410 --------------------ESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYI 449
Query: 385 TYSTCSIRIDENEENVIFALE-KGFEIVDYPFEWGDKGFLEIG-----EKVFRAWTHKHD 438
YSTCS+ I ENE + +AL+ + ++V ++G GF E EK R + H H+
Sbjct: 450 VYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFREHRFHPSLEKTRRFYPHVHN 509
Query: 439 CNSFFIAKLRK 449
+ FF+AKL+K
Sbjct: 510 MDGFFVAKLKK 520
>pir||G82009 SUN homolog NMA0162 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7378933|emb|CAB83476.1| (AL162752) SUN
homolog [Neisseria meningitidis Z2491]
Length = 419
Score = 118 bits (294), Expect = 1e-25
Identities = 84/302 (27%), Positives = 146/302 (47%), Gaps = 30/302 (9%)
Query: 105 ATDSVVRVVKEKFDLTKAKFANAILREVEKFNVEKALRKLKEKDRIEWLS-----VRFSH 159
A +S+ ++ + ++ FANAILR R L+E+D++ + +
Sbjct: 101 AVESIAKIGRGQY----RSFANAILR-----------RFLRERDKLAASCKKDDVAKHNL 145
Query: 160 PRWYVEYIIDMLG-YDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTP 218
P W+V Y+ + + + L + P +RVN + + L G+ A
Sbjct: 146 PLWWVAYLKNHYPKHWHNIAAALQSHPPMT--LRVNRRHGNAESYLEKLAAEGI--AAKA 201
Query: 219 VDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFH 278
+D+ L+ PV RL G +QD + A++LNP+ GER+LD AAPG KT H
Sbjct: 202 LDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGH 261
Query: 279 AAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQ---SFIDREGFEKIIL 335
L + + + A+D RL ++++ + RLG + AD + ++ D + F+ I+
Sbjct: 262 ILELADCR--VTALDIDAGRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDTILA 319
Query: 336 DAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDE 395
D PC++SG R+ P+VKW + Q +L ++ L+ GG M +TCS+ ++E
Sbjct: 320 DVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEE 379
Query: 396 NE 397
N+
Sbjct: 380 ND 381
>pir||B81093 fmu and fmv protein, probable NMB1351 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226595|gb|AAF41725.1| (AE002483) fmu and fmv
protein, putative [Neisseria meningitidis MC58]
Length = 418
Score = 117 bits (291), Expect = 2e-25
Identities = 92/314 (29%), Positives = 151/314 (47%), Gaps = 8/314 (2%)
Query: 143 KLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDK 202
K ++ + + L+ P+W VE + +E + S +P +RVNTLK DK
Sbjct: 105 KARKTEFSDSLNTAAELPQWLVEQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164
Query: 203 VRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPG 262
V L+ TP L + + + E G +QD S +A ++ + G
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224
Query: 263 ERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNV--KLVHAD 320
E ++D A G KT A M NKG I A D + RL +K RM R G+ N+ + + ++
Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 284
Query: 321 GQSFIDREG--FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL 378
+ I R +++++DAPCS GT R+ P++K+R E + ++ Q ++L A + +
Sbjct: 285 HDARIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344
Query: 379 RSGGEMTYSTCSIRIDENEENV--IFALEKGFEIVD-YPFEWGDKGFLEIGEKVFRAWTH 435
+ G + Y+TCSI +ENE V + FE V+ G K L+ G K R +
Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHPEFEPVNCAELLAGLKIDLDTG-KYLRLNSA 403
Query: 436 KHDCNSFFIAKLRK 449
+H + FF A L++
Sbjct: 404 RHQTDGFFAAVLQR 417
>gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus]
Length = 368
Score = 116 bits (288), Expect = 5e-25
Identities = 95/314 (30%), Positives = 154/314 (48%), Gaps = 30/314 (9%)
Query: 144 LKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKV 203
LK ++ IE ++F P+W + + +L V L L + + R+N LK DIDKV
Sbjct: 70 LKNRENIE---IKF--PKWMEDKLFTLLD----VNALKRKLTERWIWARINLLKTDIDKV 120
Query: 204 RRYLEENGVRVALTPVDD---VLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPE 260
R LE + P D ++K+ ++ L + ++ D AS+ V L PE
Sbjct: 121 YRMLESQNIE--FEPDKDFYYMIKINRSSVRLSSLSIVKDFKLILHDKASSIVVEALKPE 178
Query: 261 PGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGV--KNVKLVH 318
E+++DL++APG K L EN+ E D RL K +KR GV + V +++
Sbjct: 179 ISEKLVDLSSAPGIKASLYMMLTENRAETFLADVDLKRLSKEYNLLKRCGVDLRKVHIIY 238
Query: 319 ADG--QSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRF-DEEKIKRVISVQRNMLLNAY 375
D S I +KI+LDAPCSSSG P + + + EKI++ +Q++ LLN
Sbjct: 239 QDSTKNSIIKS---DKILLDAPCSSSGMINNDPSILLKLRNGEKIEKFTKLQKS-LLNEA 294
Query: 376 RNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPFEWGDKGF--LEIGEKVFRAW 433
++S ++ Y+ CS+ +E E+ +E +EI + PF G+ + G++ R +
Sbjct: 295 LKIKS-NKLVYAVCSLFPEEGEK----VIEDYYEIAEKPFSNYQSGYSLFKSGKRSNRTF 349
Query: 434 THKHDCNSFFIAKL 447
H FFI+ L
Sbjct: 350 PHIDSTEGFFISTL 363
>pir||F81848 SUN-family protein NMA1563 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380204|emb|CAB84790.1|
(AL162756) SUN-family protein [Neisseria meningitidis
Z2491]
Length = 418
Score = 115 bits (286), Expect = 8e-25
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 4/262 (1%)
Query: 143 KLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDK 202
K ++ + + L+ P+W VE + +E + S + +RVNTLK DK
Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164
Query: 203 VRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPG 262
V L+ TP L + + + E G +QD S +A ++ + G
Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224
Query: 263 ERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNV--KLVHAD 320
E ++D A G KT A M NKG I A D + RL +K RM R G+ NV + + ++
Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNVHPERISSE 284
Query: 321 GQSFIDREG--FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNL 378
S I R +++++DAPCS GT R+ P++K+R E + +++ Q ++L A + +
Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344
Query: 379 RSGGEMTYSTCSIRIDENEENV 400
+ G + Y+TCSI +ENE V
Sbjct: 345 KPQGRLVYATCSILPEENELQV 366
>pir||I40649 hypothetical protein 265 - Coxiella burnetii
>gi|511454|gb|AAA56914.1| (U10529) unknown [Coxiella
burnetii]
Length = 265
Score = 114 bits (283), Expect = 2e-24
Identities = 76/215 (35%), Positives = 124/215 (57%), Gaps = 12/215 (5%)
Query: 195 TLKADIDKVRR--YLEE-NGVRVALTPVDDVLKVLDYEKP--VTRLEWHRKGYFVIQDLA 249
TL+ ++ K+ R YLE + ++ P+D + + EKP V +L +GY IQD A
Sbjct: 2 TLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAA 61
Query: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRL 309
+ A++L E + VLD AAPGSKT H + + +VA+D + RL ++KE + RL
Sbjct: 62 GQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRL 121
Query: 310 GVK--NVKLVHADGQSFIDR----EGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRV 363
G++ +++ + AD S ID+ E F++I+LDAPCS++G R+ P++K I +
Sbjct: 122 GLRQEHLQCLLAD-VSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQY 180
Query: 364 ISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEE 398
+ +L + L++GG + YSTCS+ DENE+
Sbjct: 181 HQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEK 215
>pir||C81412 NOL1/NOP2/sun family protein Cj0636 [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968103|emb|CAB75272.1|
(AL139075) NOL1\NOP2\sun family protein [Campylobacter
jejuni]
Length = 279
Score = 111 bits (275), Expect = 2e-23
Identities = 89/285 (31%), Positives = 143/285 (49%), Gaps = 25/285 (8%)
Query: 179 LLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWH 238
+L S + + V NTLK I+++ + + ++ V L + ++ ++
Sbjct: 4 ILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINVYCYLFDAKDKAILSSMKAF 63
Query: 239 RKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDR 298
+ +F IQ+ +S A L + G+ VLD+ AAPG K+ + A M+N G + + S DR
Sbjct: 64 NEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDR 123
Query: 299 LMKMKERMKRLGVKNVKLVHADGQSF--IDREGFEKIILDAPCSSSGTYRQFPEVKWRFD 356
+++ +K GV N K+ DG++ + F+KI+LDAPCS+ K FD
Sbjct: 124 FFILQKNLKNYGV-NAKVFMKDGKNIGNLCPLKFDKILLDAPCSTF--------AKIGFD 174
Query: 357 EEK----IKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGF--EI 410
EK IK + Q+ +L +A + L+ GGE+ YSTC+ +ENEE + AL+ F E+
Sbjct: 175 LEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLEL 234
Query: 411 VDYPFE------WGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
+D E + F EI + R D + FFIAKLRK
Sbjct: 235 LDIDLENVEAKAGQSEEFAEISK--CRRILPSLDYDGFFIAKLRK 277
>dbj|BAA31227.1| (D86411) Fmv [Vibrio alginolyticus]
Length = 225
Score = 109 bits (271), Expect = 5e-23
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 232 VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVA 291
V +L KG+ +QD A+ + L P+ GE +LD AAPG KT H E+VA
Sbjct: 12 VMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGS-EVVA 70
Query: 292 VDYSYDRLMKMKERMKRLGVKNVKLVHADG---QSFIDREGFEKIILDAPCSSSGTYRQF 348
+D RL ++ E +KRL ++ K+V D Q + E F++I+LDAPCS++G R+
Sbjct: 71 IDCDDTRLKRVHENLKRLNLQ-AKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRH 129
Query: 349 PEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENV 400
P++KW + I + +Q + + L+ GG M Y+TCSI EN E V
Sbjct: 130 PDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQV 181
>gb|AAF14354.1|AF113138_1 (AF113138) nucleolar protein Nop2 [Eremothecium gossypii]
Length = 240
Score = 109 bits (271), Expect = 5e-23
Identities = 68/207 (32%), Positives = 111/207 (52%), Gaps = 15/207 (7%)
Query: 258 NPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLV 317
+P ER+LD+AAAPG KT + +A+M+N G + A D + R + + RLG N +
Sbjct: 1 DPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVC 60
Query: 318 HADGQSFID-REGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAY- 375
+ D + F GF++I+LDAPCS +G + VK E+ ++ +Q+ ++L+A
Sbjct: 61 NYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAID 120
Query: 376 ---RNLRSGGEMTYSTCSIRIDENEENVIFALEK--GFEIVDYPFEWGDKGFLEIGEKVF 430
N + GG + YSTCS+ ++ENE V +AL K ++V+ G +G K F
Sbjct: 121 SVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGSTSYRGKKF 180
Query: 431 --------RAWTHKHDCNSFFIAKLRK 449
R + H ++ + FF+AK +K
Sbjct: 181 HPHYHLTRRYYPHTYNVDGFFVAKFQK 207
>emb|CAB76894.1| (AL159139) hypothetical protein SCL6.29c [Streptomyces coelicolor
A3(2)]
Length = 475
Score = 109 bits (271), Expect = 5e-23
Identities = 119/454 (26%), Positives = 198/454 (43%), Gaps = 28/454 (6%)
Query: 15 DALTLVEEKELSSKHALERIFKRV---EGKDKETARGIAHA--YVFEIEKWRAKIDFILN 69
+AL V+E++ + L + ++ EG +K AR A A V+ + + D I+
Sbjct: 29 EALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRRQGTYDAIIA 88
Query: 70 SVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129
+ + ++D + ++L +G ++ + A + V + + +AKF NA+L
Sbjct: 89 DCV-DRPLREVDPPVLDVLSLGVHQLLGTRIPSHAAVSASVELARVVLGDGRAKFVNAVL 147
Query: 130 REVEKFNVEKALRKLK---EKDRIEWLSVRFSHPRWYVEYIIDMLGYDEA---VRLLLSN 183
R+V + +++ L ++ ++D + L+V SHPRW V + D LG A L N
Sbjct: 148 RKVARDDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELLAADN 207
Query: 184 LRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYF 243
RP+ V + + EE V +P L V + +R G
Sbjct: 208 ERPE---VTLVARPGRATREELLGEEAAVPGRWSPYAVRLSEGGEPGAVDAVRENRAG-- 262
Query: 244 VIQDLASAYVAHVLNPEP----GERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRL 299
+QD S VA L P R LD A PG K AL +G +
Sbjct: 263 -VQDEGSQLVALALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAFLLASEKQPHR 321
Query: 300 MKMKERMKRLGVKNVKLVHADGQSFIDREG-FEKIILDAPCSSSGTYRQFPEVKWRFDEE 358
+ R +++ ADG R G F+++++D PC+ G R+ PE +WR E
Sbjct: 322 AGLVARALDGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPE 381
Query: 359 KIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK--GFEIVD-YPF 415
+ +QR +L NA +R GG + Y+TCS + E V L++ G E++D P
Sbjct: 382 DLDGFAPLQRGLLRNALEAVRVGGVVAYATCSPHLAETRAVVTDVLKQHPGTELLDARPL 441
Query: 416 EWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
G G E G V + W H H ++ ++A LR+
Sbjct: 442 LPGVPGLGE-GPDV-QLWPHVHGTDAMYLALLRR 473
>sp|P71675|YE07_MYCTU HYPOTHETICAL 48.5 KDA PROTEIN RV1407 >gi|7445108|pir||D70901
probable fmu protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1542915|emb|CAB02186.1| (Z80108) fmu
[Mycobacterium tuberculosis]
Length = 457
Score = 109 bits (270), Expect = 6e-23
Identities = 110/402 (27%), Positives = 176/402 (43%), Gaps = 25/402 (6%)
Query: 61 RAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLT 120
R +D ++ + S + +D L +LLR+GT+++ V+ A + V +FD
Sbjct: 66 RGLLDAVIGAAAERSP-QAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSA 124
Query: 121 KAKFANAILREVEKFNVEKALRKLK---EKDRIEWLSVRFSHPRWYVEYIIDMLG--YDE 175
+A F N +LR + + + +L + D I + +HPRW + D LG E
Sbjct: 125 RAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGE 184
Query: 176 AVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRL 235
+L S+ ++ ++ R VR + L P RL
Sbjct: 185 LEAVLASDDERPAVHLAARPGVLTAGELAR-----AVRGTVGRYSPFAVYLPRGDP-GRL 238
Query: 236 EWHRKGYFVIQDLASAYVAHVLNPEPGE----RVLDLAAAPGSKTFHAAAL-MENKGEIV 290
R G ++QD S VA L P + R LDL A PG KT A L ++ +
Sbjct: 239 APVRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVT 298
Query: 291 AVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPE 350
AV+ S R + + + L V+ L+ DG+ GF+++++DAPC+ G R+ PE
Sbjct: 299 AVEPSPHRADLVAQNTRGLPVE---LLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPE 355
Query: 351 VKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK-GFE 409
+WR + + +QR +L A R GG + Y+TCS + E V AL +
Sbjct: 356 ARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVH 415
Query: 410 IVDYP--FEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
+D FE G E G V + W H+H ++ F A LR+
Sbjct: 416 ALDTRPLFEPVIAGLGE-GPHV-QLWPHRHGTDAMFAAALRR 455
>gb|AAG19031.1| (AE005002) proliferating-cell nucleolar antigen; Cna [Halobacterium
sp. NRC-1]
Length = 303
Score = 106 bits (261), Expect = 7e-22
Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 16/278 (5%)
Query: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFV 244
RP VRVN L D+ L GV V + +D KP + G+
Sbjct: 23 RPLPTTVRVNPLAVTPDRAVEALAAEGVAVDRREWHPGVLEVDTNKPGNTWPYVH-GWVH 81
Query: 245 IQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKE 304
Q+ S VL+PEPG+ V D AAPG KT AA +++ G +VA D + RL ++
Sbjct: 82 GQEEVSCVPPRVLDPEPGDVVWDACAAPGGKTAQIAAEIDDDGLVVANDDNLGRLSALRG 141
Query: 305 RMKRLGVKNVKLVHADGQ-----SFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEK 359
RLGV + + + D + +F D + ++DAPCS GT R+ +
Sbjct: 142 NCDRLGVTSAAVTNTDARRATLDAFPDVAAVDAALVDAPCSCEGTIRKNADALDGAGASA 201
Query: 360 IKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE----------ENVIFALEKGFE 409
+ + +Q ++L A R GG + YSTC+ +ENE ++ + + G
Sbjct: 202 SRSLGRLQADILARAVALTRPGGTVVYSTCTFAPEENEAVVDEVLGRTDSRLVEFDVGLA 261
Query: 410 IVDYPFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKL 447
EWGD + + + R + H +D FF AKL
Sbjct: 262 SAPGLTEWGDASYDDSLARAQRYYPHHNDTGGFFAAKL 299
>emb|CAA54370.1| (X77091) fmv [Escherichia coli]
Length = 191
Score = 102 bits (251), Expect = 1e-20
Identities = 53/153 (34%), Positives = 91/153 (58%), Gaps = 5/153 (3%)
Query: 257 LNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKL 316
L P+ GE +LDL AAPG KT H + + ++VAVD RL ++ + +KRLG+K +
Sbjct: 4 LAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK-ATV 61
Query: 317 VHADGQ---SFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLN 373
DG+ + + F++I+LDAPCS++G R+ P++KW + I + +Q +L
Sbjct: 62 KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 121
Query: 374 AYRNLRSGGEMTYSTCSIRIDENEENVIFALEK 406
+ +L++GG + Y+TCS+ +EN + L++
Sbjct: 122 IWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 154
>gb|AAF51875.1| (AE003599) CG11109 gene product [Drosophila melanogaster]
Length = 358
Score = 102 bits (251), Expect = 1e-20
Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 35/235 (14%)
Query: 244 VIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMK 303
++Q+L S VL+P+PGER+LD+ AAPG+KT H A LM ++G +VA+D S R+ M
Sbjct: 129 LLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSM- 187
Query: 304 ERMKRLG---------VKNVKLVHADGQSF---------IDREGFEKIILDAPCSSSGTY 345
+ +LG + + V AD S E F++I+LDAPCS G
Sbjct: 188 --LPKLGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNR 245
Query: 346 RQFPEVKWRFDEEKI-KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFAL 404
P++ + K+ +QR + A + +R GG + YSTC++ DE E V +AL
Sbjct: 246 ---PQLSCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWAL 302
Query: 405 EKGFE--IVDYPFEWGDKGFLEIGEKVFRAWTHKH--------DCNSFFIAKLRK 449
K E + D WG G G + ++ + D FFIAK +K
Sbjct: 303 RKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGFFIAKFQK 357
>emb|CAA10711.1| (AJ132604) sunL protein [Lactococcus lactis]
Length = 424
Score = 101 bits (250), Expect = 1e-20
Identities = 104/413 (25%), Positives = 187/413 (45%), Gaps = 42/413 (10%)
Query: 47 RGIAHAYVFEIEKWRAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNP-AIA 105
+G A V+ + +A +++ + +L+ ++ + LL + +++ F P + A
Sbjct: 41 KGFVTALVYGVVSKKALLEWYITPLLK----KEPKPWAKMLLLLTIYQVLFMDKVPISAA 96
Query: 106 TDSVVRVVKEKFDLTKAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVE 165
D V++ K A F NA+LR + + + ++ +W ++S P+ ++
Sbjct: 97 VDEAVKIAKRHDGQATANFINAVLRNFMR-------SEHRNEEPKDW-ETKYSMPKLLLD 148
Query: 166 YIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKV 225
++ G +L S +P +R K+ +E G R +L + + +
Sbjct: 149 KMVRQFGGKRTGEILESLEKPSHVSLR---------KIDPTVEIAGTRPSL--LTETALI 197
Query: 226 LDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMEN 285
D + E + G IQD S VA L E E VLD AAPG K+ H A +
Sbjct: 198 ADSGN-FSITEEFQTGRITIQDETSQLVAPQLELEGTEEVLDACAAPGGKSTHMAQYLTT 256
Query: 286 KGEIVAVDYSYDRLMKMKERMKRLGVKN-VKLVHADGQSFIDREG---FEKIILDAPCSS 341
G I A+D +L + + +R V + + AD + G F++I++DAPCS
Sbjct: 257 -GHITALDLYEHKLDLINQNAQRQHVADKITTQKADATMIYENFGPEKFDRILVDAPCSG 315
Query: 342 SGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVI 401
G R+ P++++R + + +Q +L +A ++L+ G M YSTC+I +EN + V
Sbjct: 316 IGLIRRKPDIRYRKESSDFIDLQKIQLEILNSASKSLKKSGIMVYSTCTIFDEENFDVVH 375
Query: 402 FALEK--GFEIVDYPFEWGD---KGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
LE FE V+ E + +G L I +++ + FFIAK +K
Sbjct: 376 EFLENHPNFEQVEISNEKPEVIKEGCLFITPEMYHT-------DGFFIAKFKK 421
>gb|AAF73608.1| (AE002350) Nol1/Nop2/Sun family protein [Chlamydia muridarum]
Length = 368
Score = 100 bits (247), Expect = 3e-20
Identities = 76/285 (26%), Positives = 131/285 (45%), Gaps = 26/285 (9%)
Query: 128 ILREVEKFNVEKALRKLKE--KDRIEWLSVRFSHPRWYVEYIIDM---------LGYDEA 176
IL E ++ + + + K++E + IE F H W V Y + G +EA
Sbjct: 63 ILEEGKEISSQTLVEKVEEGVTENIE----HFQHLPWAVRYSVSDDLAECLSADYGEEEA 118
Query: 177 VRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLE 236
+RL L +RVNT + +DK++ L + R A L+ D P+
Sbjct: 119 IRLAKIFLEEAPCSIRVNTRRISVDKLQEVLPFSSQRGA---APSSLR-FDKRYPLQHTR 174
Query: 237 WHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSY 296
R+G F IQD +S + + + + + VLD A G K+ A ++ + D
Sbjct: 175 AFRRGLFEIQDESSQIITNAILVKDSDTVLDFCAGAGGKSLIFAQRAQH---VTLHDSRP 231
Query: 297 DRLMKMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFD 356
L + ++R+ R G+KN + + + GF +++DAPC+ SG +R+ PE K F
Sbjct: 232 QALEEARQRLSRSGIKNFTIASLP----LKQHGFSLVVVDAPCTGSGVFRRHPEKKLLFS 287
Query: 357 EEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVI 401
++ +K Q +L A + G + Y TCS+ +ENE++ +
Sbjct: 288 KQLLKNNSVAQGKILKQAQTYVAPRGRLVYITCSLLKEENEKHTL 332
>pir||F72048 RNA methyltransferase - Chlamydophila pneumoniae (strain CWL029)
>gi|4376975|gb|AAD18813.1| (AE001650) RNA
Methyltransferase [Chlamydophila pneumoniae CWL029]
>gi|8163359|gb|AAF73625.1| (AE002170) Nol1/Nop2/Sun
family protein [Chlamydophila pneumoniae AR39]
>gi|8979046|dbj|BAA98881.1| (AP002547) RNA
methyltransferase [Chlamydophila pneumoniae J138]
Length = 364
Score = 97.5 bits (239), Expect = 3e-19
Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 20/283 (7%)
Query: 132 VEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYV 191
V K N E L L I W VR+S +++ G ++A + L +
Sbjct: 76 VAKVN-EGVLENLDSYSAIPW-PVRYSISDDLAHFLVQDYGEEQAEEIAKIWLTEAPITI 133
Query: 192 RVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEK--PVTRLEWHRKGYFVIQDLA 249
RVNT K + +++ LE + ++ + L + K P+ E R+G+F IQD
Sbjct: 134 RVNTDKISVKELQEKLEYP------SSPGELPEALHFSKRHPLQSTEAFRRGFFEIQDEN 187
Query: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKM-KERMKR 308
S ++ ++ + VLD A G K+ + K + V ++ S +++ K R+ R
Sbjct: 188 SQRISQGISLTDKDIVLDFCAGAGGKSL----IFAQKAKHVVINDSRKAILQTAKHRLLR 243
Query: 309 LGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQR 368
G +N L + F +I+DAPCS +G +R+ PE KW+F ++ + + VQ+
Sbjct: 244 AGARNFSLADQ-----LRLGSFSVVIVDAPCSGTGVFRRHPEHKWQFSKKLLLNYVRVQK 298
Query: 369 NMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIV 411
++L A + G + Y TCS+ +ENE +V + G++ V
Sbjct: 299 SILKQASAYVGPRGRLVYITCSLLKEENEAHVAYMHSLGWKEV 341
>emb|CAB70100.1| (AL132949) contains similarity to Pfam domain: PF01189
(NOL1/NOP2/sun family), Score=57.3, E-value=3e-16, N=2
[Caenorhabditis elegans]
Length = 792
Score = 97.5 bits (239), Expect = 3e-19
Identities = 91/326 (27%), Positives = 140/326 (42%), Gaps = 76/326 (23%)
Query: 190 YVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLE------------- 236
Y R+NTLK D+ + LE ++ T LK ++ + VT+++
Sbjct: 464 YARINTLKWTADEAMKTLETEKWKILGT-----LKPENFAEMVTKMKDDEVYVDPHVENL 518
Query: 237 -------------WH-RKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAAL 282
W + Y ++QD AS A +LNP PG +V D AAPG KT HAAA+
Sbjct: 519 IIFAPNIQNFYEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAI 578
Query: 283 MENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADG-QSFIDREGFEKI---ILDAP 338
MEN+G++ A+D + DR+ MK+ + V D ++ + + F K+ I+D P
Sbjct: 579 MENQGKVWAMDRAADRVATMKQLLDASKVAIASSFCGDFLKTDVTDKKFSKVKFAIVDPP 638
Query: 339 CSSSGTYRQFPEVK---------------------------WRFDE----EKIKRVISVQ 367
CS SG ++ E+ W+ E +K K++I
Sbjct: 639 CSGSGIVKRMDEITGGNAEKERLEKLKNLQVHKNLDLLKMCWKCSENCFKKKTKKLIEND 698
Query: 368 RNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPF------EWGDKG 421
+L +A + L YSTCS+ +ENE+ V L + +Y EW +G
Sbjct: 699 AMILKHALK-LPGLKRAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRG 757
Query: 422 F--LEIGEKVFRAWTHKHDCNSFFIA 445
E+GE RA N FF+A
Sbjct: 758 LKTYEVGEHCLRANPKVTLTNGFFVA 783
>emb|CAB70101.1| (AL132949) contains similarity to Pfam domain: PF01189
(NOL1/NOP2/sun family), Score=57.3, E-value=3e-16,
N=2~cDNA EST yk65h1.3 comes from this gene~cDNA EST
yk65h1.5 comes from this gene~cDNA EST yk274e1.3 comes
from this gene~cDNA EST yk478h4.3 comes>
Length = 469
Score = 97.5 bits (239), Expect = 3e-19
Identities = 91/326 (27%), Positives = 140/326 (42%), Gaps = 76/326 (23%)
Query: 190 YVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLE------------- 236
Y R+NTLK D+ + LE ++ T LK ++ + VT+++
Sbjct: 141 YARINTLKWTADEAMKTLETEKWKILGT-----LKPENFAEMVTKMKDDEVYVDPHVENL 195
Query: 237 -------------WH-RKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAAL 282
W + Y ++QD AS A +LNP PG +V D AAPG KT HAAA+
Sbjct: 196 IIFAPNIQNFYEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAI 255
Query: 283 MENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADG-QSFIDREGFEKI---ILDAP 338
MEN+G++ A+D + DR+ MK+ + V D ++ + + F K+ I+D P
Sbjct: 256 MENQGKVWAMDRAADRVATMKQLLDASKVAIASSFCGDFLKTDVTDKKFSKVKFAIVDPP 315
Query: 339 CSSSGTYRQFPEVK---------------------------WRFDE----EKIKRVISVQ 367
CS SG ++ E+ W+ E +K K++I
Sbjct: 316 CSGSGIVKRMDEITGGNAEKERLEKLKNLQVHKNLDLLKMCWKCSENCFKKKTKKLIEND 375
Query: 368 RNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIVDYPF------EWGDKG 421
+L +A + L YSTCS+ +ENE+ V L + +Y EW +G
Sbjct: 376 AMILKHALK-LPGLKRAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRG 434
Query: 422 F--LEIGEKVFRAWTHKHDCNSFFIA 445
E+GE RA N FF+A
Sbjct: 435 LKTYEVGEHCLRANPKVTLTNGFFVA 460
>pir||A71500 probable RNA methyltransferase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328993|gb|AAC68155.1| (AE001326)
RNA Methyltransferase [Chlamydia trachomatis]
Length = 325
Score = 96.7 bits (237), Expect = 5e-19
Identities = 77/299 (25%), Positives = 135/299 (44%), Gaps = 22/299 (7%)
Query: 117 FDLTKAK--FANAILREVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYD 174
F L++ K A ++ +VE E +++ + W VR+S E + G +
Sbjct: 19 FGLSRGKEISAQTLVEKVE----EGVTENIEQFQHLPW-PVRYSISDDLAECLTTDYGEE 73
Query: 175 EAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEK--PV 232
EA+RL L +RVNT + +DK+++ L R A L +EK P+
Sbjct: 74 EAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAP------SSLRFEKRYPL 127
Query: 233 TRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAV 292
R+G F IQD +S + + + + + VLD A G K+ A + +
Sbjct: 128 QHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFA---QRARHVTLH 184
Query: 293 DYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVK 352
D L + + R+ R G+KN + + + F +++DAPC+ SG +R+ PE K
Sbjct: 185 DSRPQALEEARHRLSRSGIKNFTIPSQP----LKKHSFSLVVVDAPCTGSGVFRRHPEKK 240
Query: 353 WRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGFEIV 411
F ++ + Q +L A + G + Y TCS+ +ENE++ + +G++ V
Sbjct: 241 LLFSKQLLHNNSIAQERILKEALAYVAPCGRLVYITCSLMKEENEKHTSWMASQGWKCV 299
>gi|8922322 hypothetical protein FLJ10267 [Homo sapiens]
>gi|7022196|dbj|BAA91515.1| (AK001129) unnamed protein
product [Homo sapiens]
Length = 429
Score = 94.8 bits (232), Expect = 2e-18
Identities = 86/289 (29%), Positives = 123/289 (41%), Gaps = 30/289 (10%)
Query: 190 YVRVNTLKADIDKVRRYLEENGV------------------RVALTPVDDVLKVLDYEKP 231
+VRVNTLK D V Y + G L P+ L V +
Sbjct: 137 FVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTD 196
Query: 232 VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVA 291
+ +R G+ ++QD AS A +L+P PG V+D AAPG+KT H AAL++N+G+I A
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 256
Query: 292 VDYSYDRLMKMKERMKRLGVKNVKLVHAD----GQSFIDREGFEKIILDAPCSSSG-TYR 346
D RL M + R GV +L D S I+LD CS SG R
Sbjct: 257 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR 316
Query: 347 QFPEV-KWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALE 405
Q E ++ + Q+ L +A S + YSTCS+ +ENE+ V AL+
Sbjct: 317 QLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQ 375
Query: 406 K---GFEIVDYPFEWGDKGFLEI--GEKVFRAWTHKHDCNSFFIAKLRK 449
+ F + W +G E RA + FF+A + +
Sbjct: 376 QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 424
>pir||C72710 probable fmu protein APE1098 - Aeropyrum pernix (strain K1)
>gi|5104768|dbj|BAA80083.1| (AP000060) 388aa long
hypothetical fmu protein [Aeropyrum pernix]
Length = 388
Score = 94.4 bits (231), Expect = 2e-18
Identities = 76/232 (32%), Positives = 112/232 (47%), Gaps = 18/232 (7%)
Query: 228 YEKP-VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENK 286
Y P V+ L R+G Q + S YVA L+P PG V+DL AAPG K H A L +
Sbjct: 166 YRAPRVSELPGFREGLVYGQSVTSMYVARALDPRPGWVVVDLNAAPGGKVSHVAQLAGRE 225
Query: 287 GEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFID-----REGFEKIILDAPCSS 341
IVA+D ++ +++E ++RLG V++V D + + +++D PC++
Sbjct: 226 AVIVAIDRP-SKVGRLRETLERLGAGWVRVVGGDSRRASRLLPGLAGRVDAVLVDPPCTN 284
Query: 342 SGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVI 401
G + +VK D R Q + A+R LR GG + YSTC++ ENE V
Sbjct: 285 IGVIPKVFDVKTLRDSAAASR---YQWMFVEEAWRLLRRGGLLAYSTCTLSSLENELIVA 341
Query: 402 FALEKGFEIVDYPFEWGDKGFLEIGEKV---FRAWTHKHDCNSFFIAKLRKP 450
A E GF + + WG + G + FR H+ FF+A L KP
Sbjct: 342 RAEELGFRLT---WSWGLRP--SRGRRSWLGFRWEPHRDGTPGFFLAILEKP 388
>gi|11419358 hypothetical protein FLJ10267 [Homo sapiens]
Length = 382
Score = 90.9 bits (222), Expect = 3e-17
Identities = 75/235 (31%), Positives = 104/235 (43%), Gaps = 25/235 (10%)
Query: 190 YVRVNTLKADIDKVRRYLEENGV------------------RVALTPVDDVLKVLDYEKP 231
+VRVNTLK D V Y + G L P+ L V +
Sbjct: 137 FVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTD 196
Query: 232 VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVA 291
+ +R G+ ++QD AS A +L+P PG V+D AAPG+KT H AAL++N+G+I A
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 256
Query: 292 VDYSYDRLMKMKERMKRLGVKNVKLVHAD----GQSFIDREGFEKIILDAPCSSSG-TYR 346
D RL M + R GV +L D S I+LD CS SG R
Sbjct: 257 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR 316
Query: 347 QFPEV-KWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENV 400
Q E ++ + Q+ L +A S + YSTCS+ +ENE+ V
Sbjct: 317 QLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVV 370
>gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus]
Length = 327
Score = 87.0 bits (212), Expect = 4e-16
Identities = 76/289 (26%), Positives = 134/289 (46%), Gaps = 44/289 (15%)
Query: 175 EAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVA--------LTPVDDVLKVL 226
E+ L + +P V +N K DK +NG+ VA V +V L
Sbjct: 67 ESAMLGANVYKPGLKSVVINNAK---DKRVTVYSDNGIPVAEGKYYGMNTNLVVEVTNSL 123
Query: 227 DYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENK 286
+ L + G +Q AS YVAH+L+P P E+++D+ A G K H L E +
Sbjct: 124 YTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQL-EPR 182
Query: 287 GEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDR---EGFEKIILDAPCSSSG 343
+++ D++ ++ K+++ ++G++ +++ AD + + +K+++D PCS+ G
Sbjct: 183 VKLIGFDHTEKKVEKLRDLANKMGMR-IEIYKADSRYLYEDYKIGDVDKVVIDPPCSALG 241
Query: 344 TYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENV--- 400
+ + K + D I Q+ L +AY+ L+ G + YSTC++ ENE+ +
Sbjct: 242 IRPKLYDHKTKQD---ILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVINDP 298
Query: 401 IFALEKGFEIVDYPFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
F++E +EI +P H H+ FFIAKL K
Sbjct: 299 RFSVE--YEIRFHP--------------------HIHEITGFFIAKLIK 325
>gb|AAF55642.1| (AE003725) CG5558 gene product [alt 1] [Drosophila melanogaster]
Length = 433
Score = 81.5 bits (198), Expect = 2e-14
Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 37/301 (12%)
Query: 186 PQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVD-------DVLKVLDYEKPVTRLE-- 236
P YVR+NT + + YL ++ R P D +K L + +T L
Sbjct: 126 PNPRYVRINTNLYSLAEALDYLHKSDWRRKELPADASYADFLTAIKSLAENEFMTDLHVE 185
Query: 237 ------------WHRKGY-----FVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHA 279
W R F++Q+ A+ A +L P G VLD+ AAPG KT H
Sbjct: 186 GVLIFPAKWSNYWVRHPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHI 245
Query: 280 AALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDRE--GFEKIILDA 337
+M+NKG I +V+ + R + E K G VK + D + E I++D
Sbjct: 246 CNVMQNKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEYILVDP 305
Query: 338 PCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE 397
CS SG + ++++++++ +Q +L +A + + Y TCS+ +ENE
Sbjct: 306 SCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVKRIAYCTCSLWKEENE 365
Query: 398 ENV--IFALEKGFEIVD----YPFEW---GDKGFLEIGEKVFRAWTHKHDCNSFFIAKLR 448
+ V L F+++ +W GDK + IG+ V + F+A
Sbjct: 366 QVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYPNIGKNVLYCQPDSDLTDGIFLALFE 425
Query: 449 K 449
K
Sbjct: 426 K 426
>pir||F75306 probable sun protein - Deinococcus radiodurans (strain R1)
>gi|6459968|gb|AAF11717.1|AE002050_3 (AE002050) sun
protein, putative [Deinococcus radiodurans]
Length = 439
Score = 81.1 bits (197), Expect = 2e-14
Identities = 107/413 (25%), Positives = 159/413 (37%), Gaps = 43/413 (10%)
Query: 37 RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVLRGSKVEDLDLYLANLLRIGTFEMK 96
R+ G+D G+A V+ + +D L+ +L G LL G FE
Sbjct: 68 RLPGRDA----GLATHIVYGTLRHFPSLDAALSPLLTGKTHPKARA----LLLAGAFEKL 119
Query: 97 FKGVNPAIATDSVVRVVKEKFDLTKAKFANAILREVEKFNVEKALRKLKEKDRIEWLSVR 156
+ V + ++ L NA+LR VEK +V
Sbjct: 120 HLDTPLHAVVNEYVNLARDA-RLAPPGLVNAVLRRVEKADVPDV---------------- 162
Query: 157 FSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVAL 216
P+W + G ++A +L L PQ ++ ++ D R LEE+G V
Sbjct: 163 ---PKWLADVYRGAYG-EQASAVLADLLTPQPLWLSLS------DAGVRMLEEDGNVVH- 211
Query: 217 TPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKT 276
P + ++ + + +G + AS L G RVLDLA G K
Sbjct: 212 -PGIQGTERVELAQSLRATRAFMQGQAQPINPASLACVDALGDVAGVRVLDLAGGMGIK- 269
Query: 277 FHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDREGFEKIILD 336
AA L E+ +VD + + +KRLG+ L H D + +D ++LD
Sbjct: 270 --AAMLATRGAEVTSVDVVARKHDAARANLKRLGLHAEFLTH-DLTTPLDLPPAPAVLLD 326
Query: 337 APCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDEN 396
APC+ SGT R PE+K R + + ++Q ML NA + GG + YS CS+ E
Sbjct: 327 APCTGSGTLRSHPEIKLRLTPDAVAEAAALQAQMLPNAAALVAPGGVLVYSVCSVTKQEG 386
Query: 397 EENVIFALEKGFEIVDYPFEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
V L E D + G V D FFIA+LRK
Sbjct: 387 PGVVADFLAAHPEFQPESVPELDVPHVAAGAGVLTVPLGGVD--GFFIARLRK 437
>gb|AAF55643.1| (AE003725) CG5558 gene product [alt 2] [Drosophila melanogaster]
Length = 383
Score = 81.1 bits (197), Expect = 2e-14
Identities = 60/218 (27%), Positives = 101/218 (45%), Gaps = 11/218 (5%)
Query: 243 FVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKM 302
F++Q+ A+ A +L P G VLD+ AAPG KT H +M+NKG I +V+ + R +
Sbjct: 159 FILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQNKGCIYSVEQDHVRYNTL 218
Query: 303 KERMKRLGVKNVKLVHADGQSFIDRE--GFEKIILDAPCSSSGTYRQFPEVKWRFDEEKI 360
E K G VK + D + E I++D CS SG + +++++
Sbjct: 219 CEITKDAGCDIVKPILGDALNLTPERFPDVEYILVDPSCSGSGMQNRMTVCDEPKEDKRL 278
Query: 361 KRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENV--IFALEKGFEIVD----YP 414
+++ +Q +L +A + + Y TCS+ +ENE+ V L F+++
Sbjct: 279 QKLQGLQIKILSHAMGAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALR 338
Query: 415 FEW---GDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRK 449
+W GDK + IG+ V + F+A K
Sbjct: 339 NKWHNVGDKDYPNIGKNVLYCQPDSDLTDGIFLALFEK 376
>gi|6319447 Probable proliferating-cell nucleolar antigen (human p120); Ncl1p
[Saccharomyces cerevisiae]
>gi|586408|sp|P38205|NCL1_YEAST PUTATIVE
METHYLTRANSFERASE NCL1 >gi|626852|pir||S45758
proliferating-cell nucleolar antigen homolog YBL024w -
yeast (Saccharomyces cerevisiae)
>gi|536023|emb|CAA84843.1| (Z35785) ORF YBL024w
[Saccharomyces cerevisiae] >gi|602895|emb|CAA54502.1|
(X77291) homolog of human proliferating-cell nucleolar
protein p120 [Saccharomyces cerevisiae]
Length = 684
Score = 79.6 bits (193), Expect = 7e-14
Identities = 62/192 (32%), Positives = 87/192 (45%), Gaps = 27/192 (14%)
Query: 246 QDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALM-----ENKGEIVAVDYSYDRLM 300
Q+ S VL +P VLD+ AAPGSKT + E G +VA D R
Sbjct: 150 QEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDADARRSH 209
Query: 301 KMKERMKRLGVKNVKLVHADGQSFI------------DREGFEKIILDAPCSSSGTYRQF 348
+ ++KRL N+ +V+ D Q F D F++I+ D PCS GT R+
Sbjct: 210 MLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGDGTMRKN 269
Query: 349 PEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGF 408
V ++ + + +VQ N+L L++ G + YSTCS+ ENE V AL K
Sbjct: 270 VNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAEALRK-- 327
Query: 409 EIVDYPFEWGDK 420
WGDK
Sbjct: 328 --------WGDK 331
>gi|6324306 Ynl022cp [Saccharomyces cerevisiae]
>gi|1730712|sp|P53972|YNC2_YEAST HYPOTHETICAL 56.2 KD
PROTEIN IN UME3-HDA1 INTERGENIC REGION
>gi|2131865|pir||S62934 hypothetical protein YNL022c -
yeast (Saccharomyces cerevisiae)
>gi|1301853|emb|CAA95884.1| (Z71298) ORF YNL022c
[Saccharomyces cerevisiae]
Length = 490
Score = 74.9 bits (181), Expect = 2e-12
Identities = 67/244 (27%), Positives = 115/244 (46%), Gaps = 45/244 (18%)
Query: 232 VTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALM------EN 285
+T E ++ G +IQD AS + AH+LNP P + V+D +APG+KT H A+ + +N
Sbjct: 213 ITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPEPPKDN 272
Query: 286 KGEIVAVDYSYDRLMKMKERMKRLGVK-NVKLVHADGQSFIDREGFEKI---ILDAPCSS 341
I A + +R +++ +K G N+ + D E ++ + I+D CS
Sbjct: 273 NTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVDPSCSG 332
Query: 342 SGTY-RQF-------------------PEVKWRFD-----EEKIKRVISVQRNMLLNAYR 376
SG + R+F P+ + F + ++ ++ S Q M+ +A
Sbjct: 333 SGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMVKHA-M 391
Query: 377 NLRSGGEMTYSTCSIRIDENEENVIFAL------EKGFEIV---DYPFEWGDKGFLEIGE 427
+ + ++ YSTCSI +ENE VI L E G+++ + W +G +E E
Sbjct: 392 SFPAAKKIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKREVIPSWPRRGKVEEFE 451
Query: 428 KVFR 431
+VFR
Sbjct: 452 EVFR 455
>gb|AAD22359.1|AC006592_16 (AC006592) unknown protein [Arabidopsis thaliana]
Length = 837
Score = 74.1 bits (179), Expect = 3e-12
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 28/194 (14%)
Query: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGE--------IVAV 292
G Q+ S L+ P VLD+ AAPGSKTF ++ E +VA
Sbjct: 165 GNITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVAN 224
Query: 293 DYSYDRLMKMKERMKRLGVKNVKLVHADGQSF--------------------IDREGFEK 332
D + R + + KR+ N+ + + +GQ F I++ F++
Sbjct: 225 DVDFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDR 284
Query: 333 IILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIR 392
++ D PCS GT R+ P++ +++ + S+Q + + L+ GG+M YSTCS+
Sbjct: 285 VLCDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMN 344
Query: 393 IDENEENVIFALEK 406
E+E V L +
Sbjct: 345 PVEDEAVVAEILRR 358
>emb|CAA21831.1| (AL033125) 1-evidence=predicted by
content~1-method=genefinder;084~1-evidence_end~2-
evidence=predicted by
match~2-match_accession=SWISS-PROT:P38205~2-
match_description=HYPOTHETICAL 77.9 KD PROTEIN IN
RRN10-MCM2 INTERGENIC REGION.~2-match_species=SACCHA>
Length = 751
Score = 73.7 bits (178), Expect = 4e-12
Identities = 57/191 (29%), Positives = 89/191 (45%), Gaps = 26/191 (13%)
Query: 246 QDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHA-----AALMENK---GEIVAVDYSYD 297
Q+ S VL+ P ++VLD+ AAPGSKT AA E+K G ++A D +
Sbjct: 161 QEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDVDNN 220
Query: 298 RLMKMKERMKRLG-------------VKNVKLVHADGQSFIDREGFEKIILDAPCSSSGT 344
R + + KRL N+ DG I + F+KI+ D PCS GT
Sbjct: 221 RCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILK--FDKILCDVPCSGDGT 278
Query: 345 YRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE---ENVI 401
R+ P++ +++ + + +Q ++ L GG + YSTCS+ ENE + +I
Sbjct: 279 LRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRII 338
Query: 402 FALEKGFEIVD 412
+ E+VD
Sbjct: 339 KDADGALELVD 349
>gb|AAF45921.1| (AE003430) EG:EG0007.9 gene product [Drosophila melanogaster]
Length = 746
Score = 73.7 bits (178), Expect = 4e-12
Identities = 57/191 (29%), Positives = 89/191 (45%), Gaps = 26/191 (13%)
Query: 246 QDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHA-----AALMENK---GEIVAVDYSYD 297
Q+ S VL+ P ++VLD+ AAPGSKT AA E+K G ++A D +
Sbjct: 161 QEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDVDNN 220
Query: 298 RLMKMKERMKRLG-------------VKNVKLVHADGQSFIDREGFEKIILDAPCSSSGT 344
R + + KRL N+ DG I + F+KI+ D PCS GT
Sbjct: 221 RCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILK--FDKILCDVPCSGDGT 278
Query: 345 YRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE---ENVI 401
R+ P++ +++ + + +Q ++ L GG + YSTCS+ ENE + +I
Sbjct: 279 LRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRII 338
Query: 402 FALEKGFEIVD 412
+ E+VD
Sbjct: 339 KDADGALELVD 349
>pir||T38517 hypothetical protein SPAC2C4.06c - fission yeast
(Schizosaccharomyces pombe) >gi|2414617|emb|CAB16366.1|
(Z99259) hypothetical protein [Schizosaccharomyces
pombe]
Length = 455
Score = 73.0 bits (176), Expect = 7e-12
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 28/240 (11%)
Query: 190 YVRVNTLKADIDKVRRYLEENGVRVA--LTP----VDDVLK---VLDYEKPVTRLEWHRK 240
++R+NT+K+ D+V + L + V L P +DD ++ +D P+ +++
Sbjct: 128 WLRINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYIDDCVENLIAIDPSFPIVENSLYKE 187
Query: 241 GYFVIQDLASAYVAHVLNPEPGE--RVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDR 298
G +IQD AS + A VL G ++D AAPG+KT H AA K I A + R
Sbjct: 188 GKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKR 246
Query: 299 LMKMKERMKRLGVKNVKLVH-----ADGQSFIDREGFEKIILDAPCSSSG-----TYRQF 348
+ +++ + G NV + H D +S + R I+LD CS SG Y
Sbjct: 247 VQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYR-NVTHILLDPSCSGSGIVSRQDYLLG 305
Query: 349 PEVKWRFDEEKIKRVISVQRNMLLNA--YRNLRSGGEMTYSTCSIRIDENEENVIFALEK 406
E D E+++ + S Q +L +A + N R +TYSTCS+ ENE+ V L +
Sbjct: 306 NEQDVTEDTERLENLCSFQSTILKHALQFPNCR---HVTYSTCSVHRLENEQVVCEVLSQ 362
>gb|AAF51412.1| (AE003587) CG4749 gene product [Drosophila melanogaster]
Length = 503
Score = 72.2 bits (174), Expect = 1e-11
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 245 IQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKE 304
+ D AS L +PGERVLD A+PG K+ + + +V D RL K+++
Sbjct: 274 MMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTL-HLDHLVCNDIQESRLNKLRK 332
Query: 305 RMK--------RLGVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFD 356
M+ R K + L +D ++ E F+KI++D PC++ + F
Sbjct: 333 VMQEYLFDYKERWAGKRLILSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNI-FK 391
Query: 357 EEKIK---RVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEKGF 408
+IK R+ +Q +L N R LR GG + YSTCS+ +N+ V AL+K F
Sbjct: 392 PTRIKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVF 446
>emb|CAC05734.1| (AL391744) putative methyltransferase possibily cytidine and tRNAs;
similar to yeast ncl1 [Schizosaccharomyces pombe]
Length = 396
Score = 70.6 bits (170), Expect = 3e-11
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 40/215 (18%)
Query: 220 DDVLKVLDYEKPVTRLEWHRKGY--FVI----------QDLASAYVAHVLNPEPGERVLD 267
D + +LD K V R H K F++ Q+ S +LN E +VLD
Sbjct: 90 DGMAFMLDISKEVIRKSPHLKALQEFLVLETEAGDINRQESVSMVPPLLLNVESHHKVLD 149
Query: 268 LAAAPGSKT------FHAAALMEN------KGEIVAVDYSYDRLMKMKERMKRLGVKNVK 315
+ AAPGSKT H E+ G ++A D R + ++KRL NV
Sbjct: 150 MCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVHQIKRLNSPNVL 209
Query: 316 LVH-------------ADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKR 362
+V+ DG+ F+ F++I+ D PCS GT+R+ + + +
Sbjct: 210 IVNHDASFLPNFHLSSPDGKKFLK---FDRILADVPCSGDGTFRKNIALWNEWSLKTALG 266
Query: 363 VISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENE 397
+ + Q +L+ + L GG + YSTCS+ ENE
Sbjct: 267 LHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENE 301
>emb|CAA71351.1| (Y10304) sun [Bacillus subtilis]
Length = 240
Score = 70.2 bits (169), Expect = 4e-11
Identities = 58/249 (23%), Positives = 120/249 (47%), Gaps = 15/249 (6%)
Query: 6 RVSLHEIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKID 65
+ S+ +I +AL +E+ + S L+ + K E D+ RG+ V+ + + +D
Sbjct: 3 KTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQN--RGLLTELVYGTLQNKIALD 60
Query: 66 FILNSVLRGSKVEDLDLYLANLLRIGTFEMKF-KGVNPAIATDSVVRVVKEKFDLTKAKF 124
++L + +K + + ++ LLR+ ++M++ + + A V + K + A F
Sbjct: 61 YMLKPFI--NKPQKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASF 118
Query: 125 ANAILREVEKFNVEK--ALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLS 182
N +LR +++ V A+ +D + L+ SHP W V+ D G++ A ++
Sbjct: 119 VNGVLRSIQREGVPSFDAI-----EDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRI 173
Query: 183 NLRPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPV-DDVLKVLDYEKPVTRLEWHRKG 241
+L P + +RVN +KAD ++ + G+ V + +D +K+L + + + + G
Sbjct: 174 HLIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLL--KGTIAGTHFFQNG 231
Query: 242 YFVIQDLAS 250
IQD +S
Sbjct: 232 EVSIQDESS 240
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.139 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162154563
Number of Sequences: 2977
Number of extensions: 6838419
Number of successful extensions: 19250
Number of sequences better than 1.0e-10: 79
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 19019
Number of HSP's gapped (non-prelim): 96
length of query: 450
length of database: 189,106,746
effective HSP length: 56
effective length of query: 394
effective length of database: 155,591,474
effective search space: 61303040756
effective search space used: 61303040756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)