BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2392 (PAB2392) DE:Hypothetical protein
         (240 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75125 hypothetical protein PAB2392 - Pyrococcus abyssi (st...   477  e-134
pir||B71006 hypothetical protein PH1344 - Pyrococcus horikoshii ...   312  2e-84

>pir||G75125 hypothetical protein PAB2392 - Pyrococcus abyssi (strain Orsay)
           >gi|5458231|emb|CAB49720.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 240
           
 Score =  477 bits (1215), Expect = e-134
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MKFEELLYSIGSLVEKMGAKMKDFIIPSPSEKIPKSKFLKRNLTPHELISLRLQLSFLLF 60
           MKFEELLYSIGSLVEKMGAKMKDFIIPSPSEKIPKSKFLKRNLTPHELISLRLQLSFLLF
Sbjct: 1   MKFEELLYSIGSLVEKMGAKMKDFIIPSPSEKIPKSKFLKRNLTPHELISLRLQLSFLLF 60

Query: 61  LVISLISMLLRNLPILILAFTLEFLYIRYTLIKNREFMVSFNPYRFFYYGISTMTFLAFL 120
           LVISLISMLLRNLPILILAFTLEFLYIRYTLIKNREFMVSFNPYRFFYYGISTMTFLAFL
Sbjct: 61  LVISLISMLLRNLPILILAFTLEFLYIRYTLIKNREFMVSFNPYRFFYYGISTMTFLAFL 120

Query: 121 GYLILRNFTKALKYYLVYIGIISLAVLGFRYYFKHRFGRDYTYGIVEEIKNDLAKVFVHD 180
           GYLILRNFTKALKYYLVYIGIISLAVLGFRYYFKHRFGRDYTYGIVEEIKNDLAKVFVHD
Sbjct: 121 GYLILRNFTKALKYYLVYIGIISLAVLGFRYYFKHRFGRDYTYGIVEEIKNDLAKVFVHD 180

Query: 181 DISANVKPGYYWVPANANIKEGDIVKLLVEQRTFRGSIPVRILEVSQSSQTSTEPKDESE 240
           DISANVKPGYYWVPANANIKEGDIVKLLVEQRTFRGSIPVRILEVSQSSQTSTEPKDESE
Sbjct: 181 DISANVKPGYYWVPANANIKEGDIVKLLVEQRTFRGSIPVRILEVSQSSQTSTEPKDESE 240


>pir||B71006 hypothetical protein PH1344 - Pyrococcus horikoshii
           >gi|3257767|dbj|BAA30450.1| (AP000006) 245aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 245
           
 Score =  312 bits (792), Expect = 2e-84
 Identities = 154/245 (62%), Positives = 192/245 (77%), Gaps = 5/245 (2%)

Query: 1   MKFEELLYSIGSLVEKMGAKMKDFIIPSPSEKIPKSKFL----KRNLTPHELISLRLQLS 56
           M  E LLYSIG  +EK+  K+K+F++P P+E     +FL    KRN+T HEL+SLRLQL 
Sbjct: 1   MSLENLLYSIGLAMEKVFIKIKEFLLPKPTENPESFRFLRKLVKRNITYHELVSLRLQLI 60

Query: 57  FLLFLV-ISLISMLLRNLPILILAFTLEFLYIRYTLIKNREFMVSFNPYRFFYYGISTMT 115
           F+++L+ + LI+MLL++   L+L F +EFLYIRYT+I+N   ++    YRFFYYGIST+T
Sbjct: 61  FIIYLISLLLITMLLKDPLTLLLTFVIEFLYIRYTIIRNWNLIIGPRAYRFFYYGISTIT 120

Query: 116 FLAFLGYLILRNFTKALKYYLVYIGIISLAVLGFRYYFKHRFGRDYTYGIVEEIKNDLAK 175
           F+AFLGY+++R     L YYL YI  I + V+ FRYYFKH+FGRDYTYGI+EE+K DL +
Sbjct: 121 FVAFLGYVLIRKVATELIYYLTYISSIFVIVVVFRYYFKHKFGRDYTYGIIEEVKEDLVR 180

Query: 176 VFVHDDISANVKPGYYWVPANANIKEGDIVKLLVEQRTFRGSIPVRILEVSQSSQTSTEP 235
           VFVHDDI+ANVKPGYYWVP  +  KEGDIVKLLVE RTFR SIPVRILEVSQSSQTSTEP
Sbjct: 181 VFVHDDIAANVKPGYYWVPKVSEAKEGDIVKLLVENRTFRSSIPVRILEVSQSSQTSTEP 240

Query: 236 KDESE 240
           K+ESE
Sbjct: 241 KEESE 245


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.144    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84426557
Number of Sequences: 2977
Number of extensions: 3456266
Number of successful extensions: 11629
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11625
Number of HSP's gapped (non-prelim): 2
length of query: 240
length of database: 189,106,746
effective HSP length: 53
effective length of query: 187
effective length of database: 157,386,935
effective search space: 29431356845
effective search space used: 29431356845
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)