BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2393 (mae1-like) DE:C4-dicarboxylate transporter, putative
(339 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75125 probable c4-dicarboxylate transporter PAB2393 - Pyro... 700 0.0
pir||D71077 probable malic acid transport protein - Pyrococcus h... 400 e-111
sp|Q57996|Y576_METJA HYPOTHETICAL PROTEIN MJ0576 >gi|2129102|pir... 399 e-110
sp|Q58172|Y762_METJA HYPOTHETICAL PROTEIN MJ0762 >gi|2129101|pir... 394 e-109
gi|11497959 C4-dicarboxylate transporter (mae1) [Archaeoglobus f... 156 3e-37
pir||T36852 probable integral membrane protein - Streptomyces co... 132 6e-30
gb|AAC45489.1| (AF002247) ORF4; Putative transmembrane protein [... 115 6e-25
pir||E82091 conserved hypothetical protein VC2323 [imported] - V... 81 2e-14
sp|P50537|MAE1_SCHPO MALIC ACID TRANSPORT PROTEIN (MALATE PERMEA... 74 2e-12
pir||A82449 conserved hypothetical protein VCA0524 [imported] - ... 73 4e-12
>pir||E75125 probable c4-dicarboxylate transporter PAB2393 - Pyrococcus abyssi
(strain Orsay) >gi|5458229|emb|CAB49718.1| (AJ248285)
C4-dicarboxylate transporter, putative [Pyrococcus
abyssi]
Length = 339
Score = 700 bits (1787), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MRWIREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILR 60
MRWIREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILR
Sbjct: 1 MRWIREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILR 60
Query: 61 WVLYKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFS 120
WVLYKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFS
Sbjct: 61 WVLYKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFS 120
Query: 121 LLIPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWG 180
LLIPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWG
Sbjct: 121 LLIPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWG 180
Query: 181 SGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEP 240
SGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEP
Sbjct: 181 SGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEP 240
Query: 241 LLVLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFG 300
LLVLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFG
Sbjct: 241 LLVLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFG 300
Query: 301 IGVIDSFGFTLYWFLLLLWVVTGIKTLKAIAPRRASRSS 339
IGVIDSFGFTLYWFLLLLWVVTGIKTLKAIAPRRASRSS
Sbjct: 301 IGVIDSFGFTLYWFLLLLWVVTGIKTLKAIAPRRASRSS 339
>pir||D71077 probable malic acid transport protein - Pyrococcus horikoshii
>gi|3257295|dbj|BAA29978.1| (AP000004) 330aa long
hypothetical malic acid transport protein [Pyrococcus
horikoshii]
Length = 330
Score = 400 bits (1018), Expect = e-111
Identities = 193/324 (59%), Positives = 241/324 (73%), Gaps = 4/324 (1%)
Query: 4 IREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWVL 63
+++F PSWFASVMGTGALALVS +YS +L +L+ S FLTYLNT++FF+LLIPW+LRW+
Sbjct: 5 VKDFAPSWFASVMGTGALALVSKSYSFKLPILEAFSKFLTYLNTIIFFVLLIPWLLRWIK 64
Query: 64 YKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFSLLI 123
Y A KDL HP+ HFYGT+ IAM +++ + L + G +A W LG+ + + F+ LI
Sbjct: 65 YPSEAKKDLYHPVTSHFYGTMPIAMTIVAVN-LAMFGYKEIALPLWILGSILVVIFAFLI 123
Query: 124 PYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWGSGF 183
PYL FI + ++VK ITPAWFIPPVGLIVIPLT P + S + +EV ++NYF +G+GF
Sbjct: 124 PYLFFISEGVDVKTITPAWFIPPVGLIVIPLTSLPFVPS-SVMWREVFIVLNYFGFGAGF 182
Query: 184 FLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEPLLV 243
F+YLALFAIVM RFI HE LP +APA+WINLGP+GAG L L K K
Sbjct: 183 FIYLALFAIVMRRFITHELLPPIMAPAVWINLGPLGAGAVALLNLAKIMPIA--KSAFKA 240
Query: 244 LGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFGIGV 303
I WGFG+WWL MAILMTL+Y++NL+LPYSLAWWAFIFPLGAYVSAT+NV ++ GI
Sbjct: 241 FAFILWGFGLWWLIMAILMTLHYLKNLHLPYSLAWWAFIFPLGAYVSATYNVGISIGITA 300
Query: 304 IDSFGFTLYWFLLLLWVVTGIKTL 327
+ FGF LYWFLL LW+VTGIKTL
Sbjct: 301 MIEFGFALYWFLLALWLVTGIKTL 324
>sp|Q57996|Y576_METJA HYPOTHETICAL PROTEIN MJ0576 >gi|2129102|pir||H64371 malic acid
transport protein homolog - Methanococcus jannaschii
>gi|1591283|gb|AAB98567.1| (U67506) malic acid transport
protein [Methanococcus jannaschii]
Length = 347
Score = 399 bits (1015), Expect = e-110
Identities = 174/327 (53%), Positives = 235/327 (71%)
Query: 4 IREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWVL 63
I+ F PSWFA+VMGTG LA+ SL YSS L +LK++++ L Y N L+FF+ L+PW+LRW++
Sbjct: 12 IKNFVPSWFAAVMGTGILAVDSLLYSSYLPILKDVAVGLFYFNVLLFFIFLVPWVLRWIM 71
Query: 64 YKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFSLLI 123
+K+NA+ DLKHP++ FY TI ++ LVL AD++ I + FWTLG FSL++
Sbjct: 72 FKDNALADLKHPVLSAFYPTIAVSCLVLGADFINIGHNMFWGGVFWTLGAIGMFLFSLIV 131
Query: 124 PYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWGSGF 183
P+ MF + I + ++ P W+IPPVGLIVIP+ G+ ++ H +G+ E+ LINYF WG+GF
Sbjct: 132 PFYMFKSESIKLDHVNPGWYIPPVGLIVIPIAGSLIMPHLTGVWHELTVLINYFGWGAGF 191
Query: 184 FLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEPLLV 243
FLYLAL A+V+YRFILH PLP +AP +WINLGPIGAG L ++ N+ FI IKEP +
Sbjct: 192 FLYLALLAVVIYRFILHHPLPSAMAPTVWINLGPIGAGIVALINMVNNSPFITIKEPFYI 251
Query: 244 LGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFGIGV 303
IFWGFG+WW MAI+MTLYY++ L LPY+++WWAFIFPLGAYV+++H V F +
Sbjct: 252 FSFIFWGFGLWWSLMAIIMTLYYVKKLKLPYAMSWWAFIFPLGAYVASSHLVYKIFKFSI 311
Query: 304 IDSFGFTLYWFLLLLWVVTGIKTLKAI 330
ID GF LYW L W +T IKT +
Sbjct: 312 IDYIGFGLYWLLFFFWAITLIKTTNKV 338
>sp|Q58172|Y762_METJA HYPOTHETICAL PROTEIN MJ0762 >gi|2129101|pir||B64395 malic acid
transport protein - Methanococcus jannaschii
>gi|1591472|gb|AAB98753.1| (U67521) C4-dicarboxylate
transporter (mae1) [Methanococcus jannaschii]
Length = 342
Score = 394 bits (1002), Expect = e-109
Identities = 171/328 (52%), Positives = 231/328 (70%)
Query: 3 WIREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWV 62
+I+ F SWFA+VMGTG LA+ SL YS L +LK++S L Y N L+FF+ L+ WILRWV
Sbjct: 4 YIKNFESSWFAAVMGTGVLAVTSLFYSEYLPILKDISFLLFYFNILLFFVFLMLWILRWV 63
Query: 63 LYKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFSLL 122
Y +N I +LKHP++ F T+ +AMLVL D+++I + + K FW G FSL+
Sbjct: 64 KYPKNMIAELKHPVLSSFSPTVAVAMLVLGIDFILIKNNLFLGKIFWVFGAIGMFLFSLI 123
Query: 123 IPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWGSG 182
+P+ MF + I + ++ P W+IPPVGLIVIP+ G+ ++ H +G+ E+ LINYF WG+G
Sbjct: 124 VPFYMFKSESIKLDHVNPGWYIPPVGLIVIPIAGSLIMPHLTGVWHELTVLINYFGWGAG 183
Query: 183 FFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEPLL 242
FFLYLAL A+V+YRFILH PLP +AP +WINLGPIGAG L ++ N+ FI IKEP
Sbjct: 184 FFLYLALLAVVIYRFILHHPLPSAMAPTVWINLGPIGAGIVALINMVNNSPFITIKEPFY 243
Query: 243 VLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFGIG 302
+ IFWGFG+WW MAI+MTLYY++ L LPY+++WWAFIFPLG Y+++TH V FG
Sbjct: 244 IFSFIFWGFGLWWSLMAIIMTLYYVKKLKLPYAMSWWAFIFPLGVYIASTHLVYKIFGFE 303
Query: 303 VIDSFGFTLYWFLLLLWVVTGIKTLKAI 330
++D GF LYW L W+VT IKT+ +
Sbjct: 304 IVDYIGFGLYWLLFFFWIVTLIKTINKV 331
>gi|11497959 C4-dicarboxylate transporter (mae1) [Archaeoglobus fulgidus]
>gi|7482935|pir||C69293 C4-dicarboxylate transporter
(mae1) homolog - Archaeoglobus fulgidus
>gi|2650284|gb|AAB90885.1| (AE001080) C4-dicarboxylate
transporter (mae1) [Archaeoglobus fulgidus]
Length = 319
Score = 156 bits (391), Expect = 3e-37
Identities = 102/327 (31%), Positives = 166/327 (50%), Gaps = 20/327 (6%)
Query: 4 IREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWVL 63
++EF WFA+++GTG +A+ SL Y LS+ LTYL T +F +L W+ + +
Sbjct: 3 LKEFKIGWFATILGTGGVAIASLPY------FPVLSVVLTYLLTAIFVILTAVWLAKIIR 56
Query: 64 YKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFSLLI 123
Y +L H +M +FY I+ ++L+ Y + + + G G+ + ++ +
Sbjct: 57 YPRVVAAELGHFVMGNFYPLQPISAVILAILYRKL--GIPLDLPLLAYGAGLILVLTVYL 114
Query: 124 PYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWGSGF 183
Y F + + +I WFIPPV I++ T A LL + T V LI YF G G
Sbjct: 115 SYHFFANVKAEIHHIHGGWFIPPVSTILV--TDA-LLQYSPNETFFVTSLI-YF--GIGL 168
Query: 184 FLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFI---RIKEP 240
L+L + I+ R + HE +AP +I L PIG + K+ E I +
Sbjct: 169 MLFLFISTILFLRLVNHELPVFELAPTNFILLAPIGILIVDFTLIAKHAEAIFSANLVPL 228
Query: 241 LLVLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFG 300
L+ + WGFG+W LA+ IL+ L Y+R +P+ L WW+++FP AY +T +A++
Sbjct: 229 ALIASISLWGFGLWALAVNILLLLRYLRQ-EMPFFLGWWSYVFPTAAYTLST--IALSHF 285
Query: 301 IGVIDSFGFTLYWFLLLLWVVTGIKTL 327
+ V LY FL+ W + G++T+
Sbjct: 286 VPVFSYAATALYAFLIAAWAIIGVRTV 312
>pir||T36852 probable integral membrane protein - Streptomyces coelicolor
>gi|3581872|emb|CAA20828.1| (AL031541) putative integral
membrane protein [Streptomyces coelicolor A3(2)]
Length = 394
Score = 132 bits (329), Expect = 6e-30
Identities = 86/343 (25%), Positives = 151/343 (43%), Gaps = 18/343 (5%)
Query: 4 IREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWVL 63
+R P+W+A VMGT + A + L+ + L+ ++ +LL L W+
Sbjct: 30 VRHLGPNWYACVMGTAIVGTAGAALPGHVAGLRAACTAVWALSLVLLVVLLTARSLHWLH 89
Query: 64 YKENAIKDLKHPMMCHFYGTIGIAMLV-------LSADYLMILGKVNVAKTFWTLGTGIT 116
+++ A L P FYG + +A+L L D++ V + +T GT I
Sbjct: 90 HRDQARAHLLDPSAAPFYGCLSMALLAVGGGALALGRDWIGTPAAVALDTVLFTAGTVIG 149
Query: 117 IFFSLLIPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHF-SGITKEVAYLIN 175
+ ++ +PYLM + + +P W +P V +V G L+ H +G +E L
Sbjct: 150 LAAAVAVPYLMAVRHRVEPGQASPVWLLPLVAPMVSAAVGPLLVPHLPAGQPRETLLLAC 209
Query: 176 YFSWGSGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFI 235
+G F L +V R + PLP + P++++ LGP+G T+ + +
Sbjct: 210 VAMFGMSLFATLVTLPVVFGRLLTGGPLPLALTPSLFLVLGPLGQSTTAVGKFADVAPGV 269
Query: 236 RIKEPL--------LVLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGA 287
+ P ++ G+ GF + WLA+A + R + +S+ WW+F FP+G
Sbjct: 270 -VPGPYAEGFAVFAVLYGVPVTGFALMWLALAAAHVVR-ARRAGMRFSMTWWSFTFPVGT 327
Query: 288 YVSATHNVAVTFGIGVIDSFGFTLYWFLLLLWVVTGIKTLKAI 330
V+ +A G+ V D LY L+ W V + T + +
Sbjct: 328 CVTGAEALARETGLVVYDGLTVALYALLVAAWAVAAVHTARGL 370
>gb|AAC45489.1| (AF002247) ORF4; Putative transmembrane protein [Rhodococcus
erythropolis]
Length = 295
Score = 115 bits (286), Expect = 6e-25
Identities = 79/286 (27%), Positives = 126/286 (43%), Gaps = 21/286 (7%)
Query: 62 VLYKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGK--------VNVAKTFWTLGT 113
+ +++ A + HP+M FYG +A+L + A M+LGK + WT GT
Sbjct: 1 IRHRQYAREHAAHPVMVQFYGAPPMALLTVGAG-TMLLGKDVIGAAPATVIFAVLWTAGT 59
Query: 114 GITIFFSLLIPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYL 173
+ + S+L+PYLM + PAW +P V +V TGA LL H + +A L
Sbjct: 60 ALGLITSILVPYLMITAHDHQTAVALPAWLMPVVPPMVSASTGALLLPHIADGQWRLAML 119
Query: 174 IN-YFSWGSGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTL------Y 226
Y +G + + ++ R + P AP +WI LG IG +
Sbjct: 120 SGCYAMFGLSLIIGMLTMTLIYGRLVHGGIPPVQAAPTVWITLGMIGQSITAANLLGNDA 179
Query: 227 ALIKNNEFIRIKEPLLVLGLIF----WGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFI 282
L+ E + L V G+++ GFGV +A +T++ + L +SL WW+F
Sbjct: 180 PLVFTGETASVATGLHVFGILYGLTMGGFGVLMFTLATALTIHAAQK-GLTFSLTWWSFT 238
Query: 283 FPLGAYVSATHNVAVTFGIGVIDSFGFTLYWFLLLLWVVTGIKTLK 328
FP+G V+ + G +++ LY LL W TL+
Sbjct: 239 FPIGTCVTGATALGGALGSAAVEALAIGLYAALLAAWGTVAAHTLR 284
>pir||E82091 conserved hypothetical protein VC2323 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656889|gb|AAF95467.1|
(AE004302) conserved hypothetical protein [Vibrio
cholerae]
Length = 322
Score = 81.1 bits (197), Expect = 2e-14
Identities = 69/286 (24%), Positives = 123/286 (42%), Gaps = 33/286 (11%)
Query: 44 YLNTLVFFLLLIPWILRWVLYKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVN 103
++ + +LLI +++ + +DL HP++ T +A +V+SA LG
Sbjct: 42 WVGAAIASVLLIVLAFKFLWHGHLLRQDLAHPVVGSVVPTFAMATMVVSAS----LGHFY 97
Query: 104 --VAKTFWTLGTGITIFFSLLIPYLMFIEKEINVKNITPAWFIPPVGLIV--IPLTGAPL 159
W G+ I F L+ +L + + ++ P+WF+PPVG+IV + +G P
Sbjct: 98 PVAGDALWLFAVGLHILF--LVSFLYHRAQAFELHHMVPSWFVPPVGIIVADVSFSGHPA 155
Query: 160 LSHFSGITKEVAYLINYFSWGSGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIG 219
L+ +AY F G Y + +++YRFI +P P + I P
Sbjct: 156 LA-------PIAYACLVF----GMLAYAVMLPMMIYRFIFTHEIPDAAKPTLAIMAAPAS 204
Query: 220 AGTSTLYALIKNNEFIRIKEPLLVLGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWW 279
+ + + EP V+ + +G V M ++ L + R L LP+S +
Sbjct: 205 LSLAGYLTV--------VSEPSPVIVALLFGIAV---LMTAIIYLAFTRLLRLPFSPGYA 253
Query: 280 AFIFPLGAYVSATHNVAVTF-GIGVIDSFGFTLYWFLLLLWVVTGI 324
AF FP+ +A +A IGV + + ++W L +V +
Sbjct: 254 AFTFPMVIGATALFKMAHWMENIGVAEHYVAQVHWLASLELIVATV 299
>sp|P50537|MAE1_SCHPO MALIC ACID TRANSPORT PROTEIN (MALATE PERMEASE)
>gi|2130187|pir||S61876 C4-dicarboxylate transport
protein mae1 - fission yeast (Schizosaccharomyces
pombe) >gi|1171119|gb|AAC49149.1| (U21002) malic acid
transport protein [Schizosaccharomyces pombe]
Length = 438
Score = 74.1 bits (179), Expect = 2e-12
Identities = 66/338 (19%), Positives = 128/338 (37%), Gaps = 21/338 (6%)
Query: 4 IREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWVL 63
++ F SWFA M TG + L+ ++ R L + + L +F L + R++
Sbjct: 31 LKHFTWSWFACTMATGGVGLIIGSFPFRFYGLNTIGKIVYILQIFLFSLFGSCMLFRFIK 90
Query: 64 YKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILG-------KVNVAKTFWTLGTGIT 116
Y H + F T +++ D L I V V + + + ++
Sbjct: 91 YPSTIKDSWNHHLEKLFIATCLLSISTF-IDMLAIYAYPDTGEWMVWVIRILYYIYVAVS 149
Query: 117 IFFSLLIPYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINY 176
+ ++ + +F ++ +PAW +P ++ + + S + +
Sbjct: 150 FIYCVMAFFTIFNNHVYTIETASPAWILPIFPPMICGVIAGAVNSTQPAHQLKNMVIFGI 209
Query: 177 FSWGSGFFLYLALFAIVMYRFILHEPLPCGIAPAIWINLGP------------IGAGTST 224
G GF++YL LFA+ + RF P +++ +GP GA S
Sbjct: 210 LFQGLGFWVYLLLFAVNVLRFFTVGLAKPQDRPGMFMFVGPPAFSGLALINIARGAMGSR 269
Query: 225 LYALIKNNEFIRIKEPLLVLGLIFWGFGVWWLAMAILMTLY-YIRNLNLPYSLAWWAFIF 283
Y + N + + + WG W +A++ L + L ++ W+AFIF
Sbjct: 270 PYIFVGANSSEYLGFVSTFMAIFIWGLAAWCYCLAMVSFLAGFFTRAPLKFACGWFAFIF 329
Query: 284 PLGAYVSATHNVAVTFGIGVIDSFGFTLYWFLLLLWVV 321
P +V+ T + FG + L + W++
Sbjct: 330 PNVGFVNCTIEIGKMIDSKAFQMFGHIIGVILCIQWIL 367
>pir||A82449 conserved hypothetical protein VCA0524 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657930|gb|AAF96427.1|
(AE004383) conserved hypothetical protein [Vibrio
cholerae]
Length = 320
Score = 73.4 bits (177), Expect = 4e-12
Identities = 78/329 (23%), Positives = 137/329 (40%), Gaps = 43/329 (13%)
Query: 4 IREFPPSWFASVMGTGALALVSLAYSSRLDLLKNLSIFLTYLNTLVFFLLLIPWILRWVL 63
++ PPS A +G L + Y + ++ + +L + L LL+P +L++ L
Sbjct: 9 VQNVPPSQAALALGMIGLGHAWVLYYPAVGMV--IRPYLAFSGAL----LLLPVLLKY-L 61
Query: 64 YKENAIKDLKHPMMCHFYGTIGIAMLVLSADYLMILGKVNVAKTFWTLGTGITIFFSLLI 123
+ I DL+HP+ + +A+L+L DYL IL +A W + + +++
Sbjct: 62 HWRTFINDLRHPVSGSLMAPMSMALLIL-CDYLAILSPF-IAYPIWA--AALLLHLTMMT 117
Query: 124 PYLMFIEKEINVKNITPAWFIPPVGLIVIPLTGAPLLSHFSGITKEVAYLINYFSWGSGF 183
+ F ++ + NI P+WF+ PVG+I L G G T ++N
Sbjct: 118 LFFYFQLRQFKLANIVPSWFLYPVGVISSSLAGTQF-----GHTLFSETMVNVC-----I 167
Query: 184 FLYLALFAIVMYRFILHEPLPCGIAPAIWINLGPIGAGTSTLYALIKNNEFIRIKEPLLV 243
+Y + +V+YR + LP P + I PI +T + +P +
Sbjct: 168 AIYFVMLPLVLYRLVFAGTLPKRARPTLAIMAAPINLTLATY--------LVNFAQPDPI 219
Query: 244 LGLIFWGFGVWWLAMAILMTLYYIRNLNLPYSLAWWAFIFPLGAYVSATHNVAVTFGIGV 303
L G + M +L+ L Y+R L L + + A FP + +SA +T
Sbjct: 220 LTGALAGIAI---TMTLLIYLCYLRLLRLQFQPSIAAVTFP--SVISAVAMQRLTEFFAT 274
Query: 304 IDSFGFTLYWF---------LLLLWVVTG 323
+ L++F LL+ WV G
Sbjct: 275 DHPHWYWLHYFGFLEVTIATLLVAWVSWG 303
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.146 0.483
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128877775
Number of Sequences: 2977
Number of extensions: 5435793
Number of successful extensions: 18815
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18784
Number of HSP's gapped (non-prelim): 10
length of query: 339
length of database: 189,106,746
effective HSP length: 46
effective length of query: 293
effective length of database: 161,576,344
effective search space: 47341868792
effective search space used: 47341868792
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)