BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2394 (PAB2394) DE:Hypothetical protein
(233 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75116 hypothetical protein PAB2394 - Pyrococcus abyssi (st... 468 e-131
pir||G71015 hypothetical protein PH1421 - Pyrococcus horikoshii ... 423 e-118
pir||C69009 conserved hypothetical protein MTH1071 - Methanobact... 161 6e-39
gi|11498056 conserved hypothetical protein [Archaeoglobus fulgid... 143 2e-33
gb|AAK40451.1| Conserved hypothetical protein [Sulfolobus solfat... 104 1e-21
pir||S75394 hypothetical protein c04028 - Sulfolobus solfataricu... 104 1e-21
emb|CAC11321.1| (AL445063) conserved hypothetical protein [Therm... 99 3e-20
sp|P42962|YCSE_BACSU HYPOTHETICAL 28.1 KD PROTEIN IN SIPU 3'REGI... 79 4e-14
pir||H72667 hypothetical protein APE0766 - Aeropyrum pernix (str... 78 9e-14
>pir||H75116 hypothetical protein PAB2394 - Pyrococcus abyssi (strain Orsay)
>gi|5458160|emb|CAB49649.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 233
Score = 468 bits (1191), Expect = e-131
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MKIKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS 60
MKIKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS
Sbjct: 1 MKIKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS 60
Query: 61 GPVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI 120
GPVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI
Sbjct: 61 GPVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI 120
Query: 121 DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN 180
DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN
Sbjct: 121 DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN 180
Query: 181 DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVLRVSGYMDF 233
DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVLRVSGYMDF
Sbjct: 181 DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVLRVSGYMDF 233
>pir||G71015 hypothetical protein PH1421 - Pyrococcus horikoshii
>gi|3257844|dbj|BAA30527.1| (AP000006) 231aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 231
Score = 423 bits (1077), Expect = e-118
Identities = 205/231 (88%), Positives = 224/231 (96%)
Query: 1 MKIKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS 60
MKIKAISIDIDGTITYPNRMIHEKALEAIR+AESLGIP+MLVTGNTVQFAEAASILIGTS
Sbjct: 1 MKIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTS 60
Query: 61 GPVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI 120
GPVVAEDGGAISY+KKRIFLA+MDEEWILWNEIRKRFPNARTS+TMPDRRAGLVIMRETI
Sbjct: 61 GPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETI 120
Query: 121 DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN 180
+VETVR+II+EL LNLVAVDSGFAIHVKKPWINKG+GIEKA E LGIKP+EVAH+GDGEN
Sbjct: 121 NVETVREIINELNLNLVAVDSGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGEN 180
Query: 181 DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVLRVSGYM 231
DLDAFKVVGY++A+AQAP +LKENADYVT+KEYGEGGAEAI+H+L GY+
Sbjct: 181 DLDAFKVVGYKVAVAQAPKILKENADYVTKKEYGEGGAEAIYHILEKFGYL 231
>pir||C69009 conserved hypothetical protein MTH1071 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622169|gb|AAB85560.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 221
Score = 161 bits (404), Expect = 6e-39
Identities = 84/219 (38%), Positives = 137/219 (62%), Gaps = 4/219 (1%)
Query: 3 IKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTSGP 62
++AI++DIDGTIT R + +A++A+R AE G+PV++VTGN + FA A S+LIG SG
Sbjct: 1 MRAIAVDIDGTITDKKRRLSLEAVKALRGAEEAGVPVIMVTGNILCFAMATSVLIGASGG 60
Query: 63 VVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETIDV 122
VVAE+GG + + L ++ + + ++ ++ +P + + D R + + +
Sbjct: 61 VVAENGGVLHINDEVRVLGDISKAEMAYSHLKGIYPVRKVQFS--DLRVSEIALTRDVPA 118
Query: 123 ETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGENDL 182
+TVR+ + + + + D+GFAIH+ P +NKG+ +E E +GI+ +V IGD ENDL
Sbjct: 119 DTVREALRDFDVEVY--DTGFAIHLTDPSVNKGSSLEILLESMGIEMEDVMAIGDSENDL 176
Query: 183 DAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAI 221
+ + G+R+A+A A L+E ADYVT +GEG AEA+
Sbjct: 177 EFIEAAGFRVAVANADPELREMADYVTSAAHGEGVAEAV 215
>gi|11498056 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429216|pir||D69305 conserved hypothetical protein
AF0444 - Archaeoglobus fulgidus
>gi|2650184|gb|AAB90791.1| (AE001074) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 223
Score = 143 bits (357), Expect = 2e-33
Identities = 89/220 (40%), Positives = 126/220 (56%), Gaps = 6/220 (2%)
Query: 2 KIKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTSG 61
K KAI++DIDGT+T R ++ +A+EA+RK + IPV+L TGN FA AA+ LIG S
Sbjct: 3 KPKAIAVDIDGTLTDRKRALNCRAVEALRKVK---IPVILATGNISCFARAAAKLIGVSD 59
Query: 62 PVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETID 121
V+ E+GG + + + D+E + +R + + R V MR + D
Sbjct: 60 VVICENGGVVRFEYDGEDIVLGDKEKCV-EAVRVLEKHYEVELLDFEYRKSEVCMRRSFD 118
Query: 122 VETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEND 181
+ RK+I +G+ LV DSGFA H+ ++KG ++ E LGI E A IGD END
Sbjct: 119 INEARKLIEGMGVKLV--DSGFAYHIMDADVSKGKALKFVAERLGISSAEFAVIGDSEND 176
Query: 182 LDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAI 221
+D F+V G+ IA+A A + LKE AD VT GEG EA+
Sbjct: 177 IDMFRVAGFGIAVANADERLKEYADLVTPSPDGEGVVEAL 216
>gb|AAK40451.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 228
Score = 104 bits (256), Expect = 1e-21
Identities = 70/226 (30%), Positives = 111/226 (48%), Gaps = 8/226 (3%)
Query: 3 IKAISIDIDGTITYPNRM--IHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS 60
IK + +D+DGT+T I A+ AIR + GI V LV+GN+ +
Sbjct: 2 IKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYLD 61
Query: 61 GPVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI 120
G VAE+G + Y++K M++ L +E + F R + R + I
Sbjct: 62 GGFVAENGCIVFYKEKYRMCRQMEQS--LVDEFKSLF-KLRDTWQNEYRECDFGFVPAKI 118
Query: 121 DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN 180
E + NL SG+A+H+ K G+EK +LLG+K +VA IGD
Sbjct: 119 TDEMINWAKER---NLYIKSSGYAVHIAYNPAGKRIGVEKLLQLLGLKKEDVAAIGDSST 175
Query: 181 DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVLR 226
D++ F+ VG+++A+ A D LK+ ADY+T + G+G E + +L+
Sbjct: 176 DIELFQQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLK 221
>pir||S75394 hypothetical protein c04028 - Sulfolobus solfataricus
>gi|1707800|emb|CAA69557.1| (Y08257) orf c04028
[Sulfolobus solfataricus]
Length = 228
Score = 104 bits (256), Expect = 1e-21
Identities = 70/226 (30%), Positives = 111/226 (48%), Gaps = 8/226 (3%)
Query: 3 IKAISIDIDGTITYPNRM--IHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS 60
IK + +D+DGT+T I A+ AIR + GI V LV+GN+ +
Sbjct: 2 IKLVLVDLDGTLTEDRESTRIDLDAIYAIRLLQKSGIKVSLVSGNSYPILRGLYTYLYLD 61
Query: 61 GPVVAEDGGAISYRKKRIFLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI 120
G VAE+G + Y++K M++ L +E + F R + R + I
Sbjct: 62 GGFVAENGCIVFYKEKYRMCRQMEQS--LVDEFKSLF-KLRDTWQNEYRECDFGFVPAKI 118
Query: 121 DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN 180
E + NL SG+A+H+ K G+EK +LLG+K +VA IGD
Sbjct: 119 TDEMINWAKER---NLYIKSSGYAVHIAYNPAGKRIGVEKLLQLLGLKKEDVAAIGDSST 175
Query: 181 DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVLR 226
D++ F+ VG+++A+ A D LK+ ADY+T + G+G E + +L+
Sbjct: 176 DIELFQQVGFKVAVGNADDELKDIADYITSNKSGKGVREFVDKLLK 221
>emb|CAC11321.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 224
Score = 99.5 bits (244), Expect = 3e-20
Identities = 70/215 (32%), Positives = 110/215 (50%), Gaps = 6/215 (2%)
Query: 3 IKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTSGP 62
I+ +ID+DGT+T +R+I KA+E+IR AE G+ V L++GN + A I +G +GP
Sbjct: 2 IRLAAIDVDGTLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGP 61
Query: 63 VVAEDGGAISYRKKRI--FLANMDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRETI 120
V E+GG + I F +N L E+ KR + R+ T R A +
Sbjct: 62 VFGENGGIMFDNDGSIKKFFSNEGTNKFL-EEMSKR-TSMRSILTNRWREASTGFDIDPE 119
Query: 121 DVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGEN 180
DV+ VRK G V SG++ H+ +K + K E+ ++ E+ IGD N
Sbjct: 120 DVDYVRKEAESRG--FVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNN 177
Query: 181 DLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGE 215
D+ F++ + A A D +K +D+V++ YGE
Sbjct: 178 DMPMFQLPVRKACPANATDNIKAVSDFVSDYSYGE 212
>sp|P42962|YCSE_BACSU HYPOTHETICAL 28.1 KD PROTEIN IN SIPU 3'REGION
>gi|2127087|pir||I39893 conserved hypothetical protein
ycsE - Bacillus subtilis >gi|707082|dbj|BAA07356.1|
(D38161) similar to hypothetical 29,7 kDa E. coli
protein [Bacillus subtilis] >gi|1805473|dbj|BAA09035.1|
(D50453) homologue to hypothetical 29.7 kDa protein in
ibpA-gyrB of E. coli [Bacillus subtilis]
>gi|2632705|emb|CAB12212.1| (Z99106) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis] >gi|1588444|prf||2208409G ORF [Bacillus
subtilis]
Length = 249
Score = 79.2 bits (192), Expect = 4e-14
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 30/244 (12%)
Query: 3 IKAISIDIDGTITYPNRMIHEKALEAIRKAESLGIPVMLVTGNTV----QFAEA---ASI 55
IK I+ID+DGT+ ++I ++ +AIR+AE G+ V++ TG T+ + AE+ +S
Sbjct: 10 IKLIAIDMDGTLLNDEQLISDENRKAIREAEDKGVYVVISTGRTLMTCRELAESLKLSSF 69
Query: 56 LIGTSGPVVAEDGGAISYRKKRIFLANMDEEWILW---------------NEI-RKRFPN 99
LI +G + + + RK L + D ++W N++ R FP
Sbjct: 70 LITANGSEIWDSNFNLVERK----LLHTDHIQMMWDLRNKHNTNFWASTVNKVWRGEFPE 125
Query: 100 ARTSHTMPDRRAGLVIMRETIDVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIE 159
T H + G I + I E + ++ + + + S I V INK A
Sbjct: 126 NITDHEW--LKFGFDIEDDDIRNEVLEEL-RKTKSSEITNSSPTNIEVNALGINKAAAPC 182
Query: 160 KACELLGIKPREVAHIGDGENDLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAE 219
+ LG V +GD ND+ K G +A+ A D++KE ADY+T+ +G A+
Sbjct: 183 QGYGKLGFTMENVMAMGDSLNDIAMIKEAGLGVAMGNAQDIVKETADYITDTNIEDGVAK 242
Query: 220 AIFH 223
AI H
Sbjct: 243 AIRH 246
>pir||H72667 hypothetical protein APE0766 - Aeropyrum pernix (strain K1)
>gi|5104429|dbj|BAA79744.1| (AP000060) 239aa long
hypothetical protein [Aeropyrum pernix]
Length = 239
Score = 78.0 bits (189), Expect = 9e-14
Identities = 60/226 (26%), Positives = 100/226 (43%), Gaps = 5/226 (2%)
Query: 3 IKAISIDIDGTITYPN--RMIHEKALEAIRKAESLGIPVMLVTGNTVQFAEAASILIGTS 60
++ ++DIDGT+T + ++ R LG+ +L+TGN++ A ++ +G
Sbjct: 8 VRVAALDIDGTLTERRGAARLDGCSIAVARLLNDLGVTSILMTGNSLPVARGVAVYLGLE 67
Query: 61 GPVVAEDGGAISYRKKRIFLAN-MDEEWILWNEIRKRFPNARTSHTMPDRRAGLVIMRET 119
GPVVAE+G +R+ + + E ++ + F + + + + +
Sbjct: 68 GPVVAENGCVAVVGGERVHICSGRPPEGLVKRIMELGFKPSWQNEYRYHEYSLIPVKAAP 127
Query: 120 IDVETVRKIIHELGLNLVAVDSGFAIHVKKPWINKGAGIEKACELLGIKPREVAHIGDGE 179
VE I E G A+ SG+A+H++ P K G+ + +G EV IGDGE
Sbjct: 128 GIVERASAIAEEEGYR--AIWSGYALHIQPPGGGKARGVGEVLARIGAGWSEVLAIGDGE 185
Query: 180 NDLDAFKVVGYRIAIAQAPDVLKENADYVTEKEYGEGGAEAIFHVL 225
ND++ GY A A + K A V G E I VL
Sbjct: 186 NDVEVLARAGYSGAPGDAAEQAKRAAKIVARSPGARGTLEIIQRVL 231
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87147999
Number of Sequences: 2977
Number of extensions: 3611972
Number of successful extensions: 8534
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8517
Number of HSP's gapped (non-prelim): 11
length of query: 233
length of database: 189,106,746
effective HSP length: 55
effective length of query: 178
effective length of database: 156,189,961
effective search space: 27801813058
effective search space used: 27801813058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)