BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2396 (rpl22P) DE:LSU ribosomal protein L22P (rpl22P)
(155 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75147 lsu ribosomal protein l22p (rpl22p) PAB2396 - Pyroco... 322 1e-87
sp|O59423|RL22_PYRHO 50S RIBOSOMAL PROTEIN L22P >gi|7440982|pir|... 307 6e-83
sp|O26115|RL22_METTH 50S RIBOSOMAL PROTEIN L22P >gi|7440983|pir|... 177 7e-44
sp|P54033|RL22_METJA 50S RIBOSOMAL PROTEIN L22P >gi|2129251|pir|... 147 7e-35
sp|Q9YF76|RL22_AERPE 50S RIBOSOMAL PROTEIN L22P >gi|7440986|pir|... 129 2e-29
gi|11499504 LSU ribosomal protein L22P (rpl22P) [Archaeoglobus f... 123 1e-27
sp|Q9UXA2|RL22_SULSO 50S RIBOSOMAL PROTEIN L22P >gi|6015763|emb|... 113 9e-25
gb|AAK41013.1| LSU ribosomal protein L22AB (rpl22AB) [Sulfolobus... 113 2e-24
emb|CAC12390.1| (AL445067) probable 50S ribosomal protein L22 [T... 107 9e-23
sp|P35266|R171_HORVU 60S RIBOSOMAL PROTEIN L17-1 >gi|19102|emb|C... 100 1e-20
sp|P15008|RL22_HALHA 50S RIBOSOMAL PROTEIN L22P (HHAL22) >gi|712... 100 1e-20
pir||S32578 ribosomal protein L17.1, cytosolic - barley 100 1e-20
sp|P10970|RL22_HALMA 50S RIBOSOMAL PROTEIN L22P (HMAL22) (HL23) ... 99 2e-20
pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Sub... 99 2e-20
sp|O48557|RL17_MAIZE 60S RIBOSOMAL PROTEIN L17 >gi|7440981|pir||... 98 6e-20
prf||1506338B ribosomal protein L22 [Halobacterium halobium] 96 2e-19
pir||S32579 ribosomal protein L17.2, cytosolic - barley 95 4e-19
sp|P35267|R172_HORVU 60S RIBOSOMAL PROTEIN L17-2 >gi|19104|emb|C... 95 5e-19
gb|AAF61071.1|AF220552_1 (AF220552) ribosomal protein L17 [Paral... 94 1e-18
sp|P37380|RL17_PODCA 60S RIBOSOMAL PROTEIN L17 (L23) >gi|479492|... 93 2e-18
gi|4506617 ribosomal protein L17 [Homo sapiens] >gi|132799|sp|P1... 92 4e-18
sp|P24049|RL17_RAT 60S RIBOSOMAL PROTEIN L17 (L23) (AMINO ACID S... 92 4e-18
gi|6322284 Ribosomal protein L17B (L20B) (YL17); Rpl17bp [Saccha... 92 4e-18
gi|6322668 Ribosomal protein L17A (L20A) (YL17); Rpl17ap [Saccha... 90 1e-17
gi|11428221 similar to ribosomal protein L17 (H. sapiens) [Homo ... 90 1e-17
gi|11431907 similar to ribosomal protein L17 (H. sapiens) [Homo ... 88 6e-17
gb|AAF99734.1|AC004557_13 (AC004557) F17L21.19 [Arabidopsis thal... 86 2e-16
pir||T40136 60s ribosomal protein L17 - fission yeast (Schizosa... 85 3e-16
pir||T02163 ribosomal protein L17, cytosolic - Arabidopsis thali... 85 5e-16
sp|O59794|RL17_SCHPO 60S RIBOSOMAL PROTEIN L17 >gi|7490004|pir||... 83 2e-15
emb|CAC18189.1| (AL451014) probable ribosomal protein L17.e.A (c... 83 2e-15
gb|AAF46194.1| (AE003438) CG3203 gene product [alt 1] [Drosophil... 81 6e-15
emb|CAC10392.1| (AL049597) dJ612B15.1 (novel protein similar to ... 79 3e-14
pir||A61192 ribosomal protein homolog PD-1 - human 69 2e-11
sp|Q9ZI45|RL22_AQUPY 50S RIBOSOMAL PROTEIN L22 >gi|4165870|gb|AA... 68 8e-11
>pir||D75147 lsu ribosomal protein l22p (rpl22p) PAB2396 - Pyrococcus abyssi
(strain Orsay) >gi|5457769|emb|CAB49259.1| (AJ248284)
LSU ribosomal protein L22P (rpl22P) [Pyrococcus abyssi]
Length = 155
Score = 322 bits (817), Expect = 1e-87
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRP 60
MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRP
Sbjct: 1 MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRP 60
Query: 61 VPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAH 120
VPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAH
Sbjct: 61 VPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAH 120
Query: 121 RGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEEVRR 155
RGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEEVRR
Sbjct: 121 RGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEEVRR 155
>sp|O59423|RL22_PYRHO 50S RIBOSOMAL PROTEIN L22P >gi|7440982|pir||B71187 probable
ribosomal protein L22 - Pyrococcus horikoshii
>gi|3258206|dbj|BAA30889.1| (AP000007) 155aa long
hypothetical 50S ribosomal protein L22 [Pyrococcus
horikoshii]
Length = 155
Score = 307 bits (777), Expect = 6e-83
Identities = 145/155 (93%), Positives = 153/155 (98%)
Query: 1 MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRP 60
MG+RF YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLD+VIAL+RP
Sbjct: 1 MGKRFGYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDEVIALKRP 60
Query: 61 VPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAH 120
VPL+RYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNA+NNA+QKGLDPDKL+IIHIAAH
Sbjct: 61 VPLRRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAH 120
Query: 121 RGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEEVRR 155
RGPVLRGWYPRAFGR TPFNEQTTHIEVVVEE+RR
Sbjct: 121 RGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIRR 155
>sp|O26115|RL22_METTH 50S RIBOSOMAL PROTEIN L22P >gi|7440983|pir||C69193 ribosomal
protein L22 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621054|gb|AAB84527.1| (AE000795)
ribosomal protein L17 (E.coli L22) [Methanobacterium
thermoautotrophicum]
Length = 153
Score = 177 bits (444), Expect = 7e-44
Identities = 86/147 (58%), Positives = 108/147 (72%), Gaps = 1/147 (0%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
Y+++ D ARAS L+ISPK AVE+CRE+RGM L A +YL++VI + RPV KRY
Sbjct: 6 YAYKEEDRSGTARASATHLKISPKHAVEICREIRGMELEKAKKYLEEVIRMERPVAFKRY 65
Query: 67 NDSQGHKPG-KGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVL 125
N GH+ G G+ GRYPVK A I KVL NA+ NA+ KGLD +KLRIIHI++HRGPV+
Sbjct: 66 NRKVGHRRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVI 125
Query: 126 RGWYPRAFGRPTPFNEQTTHIEVVVEE 152
RGW PRAFGR TPFN TTH+++V+ E
Sbjct: 126 RGWIPRAFGRATPFNTPTTHVQIVLGE 152
>sp|P54033|RL22_METJA 50S RIBOSOMAL PROTEIN L22P >gi|2129251|pir||D64357 ribosomal
protein L22 - Methanococcus jannaschii
>gi|1591162|gb|AAB98449.1| (U67497) LSU ribosomal
protein L22P (rplV) [Methanococcus jannaschii]
Length = 156
Score = 147 bits (367), Expect = 7e-35
Identities = 71/141 (50%), Positives = 106/141 (74%), Gaps = 1/141 (0%)
Query: 13 DPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH 72
+PE+ ARA GR++ IS K A E+C+ + GM L++A+++L+DVIA+RRPV +R+ GH
Sbjct: 14 NPEKTARAMGRNIPISRKHAREICKSINGMKLDEAIKFLEDVIAMRRPVLFRRHCKKVGH 73
Query: 73 KPGK-GFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPR 131
+ GK G+ GRYPVK AKAI K+L +A+ NA+ KGL+ +KLRI HI+ ++G ++ + PR
Sbjct: 74 RKGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPR 133
Query: 132 AFGRPTPFNEQTTHIEVVVEE 152
AFGR TP ++T HI+V++EE
Sbjct: 134 AFGRATPKFQETVHIQVILEE 154
>sp|Q9YF76|RL22_AERPE 50S RIBOSOMAL PROTEIN L22P >gi|7440986|pir||D72728 probable
ribosomal protein L22 APE0365 - Aeropyrum pernix
(strain K1) >gi|5104004|dbj|BAA79320.1| (AP000059) 156aa
long hypothetical 50S ribosomal protein L22 [Aeropyrum
pernix]
Length = 156
Score = 129 bits (320), Expect = 2e-29
Identities = 67/154 (43%), Positives = 97/154 (62%), Gaps = 4/154 (2%)
Query: 4 RFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPL 63
R+ YS + D +A+A R++ + PK+ EV R + GM +++A RYL VI R VP
Sbjct: 3 RWGYSVKLRDESEVAKAVLRNVPVHPKIMAEVARAISGMRVDEARRYLRAVIEKREAVPF 62
Query: 64 KRYNDSQGHKPGK----GFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAA 119
+R + Q H+ G G+ GRYPVK A+ + K+L N + NA K LD ++L+IIH+AA
Sbjct: 63 RRAHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAA 122
Query: 120 HRGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEEV 153
H+G L+ W PRA+GR TP N +HIE++V EV
Sbjct: 123 HKGITLKRWMPRAWGRATPRNRVHSHIEIMVREV 156
>gi|11499504 LSU ribosomal protein L22P (rpl22P) [Archaeoglobus fulgidus]
>gi|6094032|sp|O28359|RL22_ARCFU 50S RIBOSOMAL PROTEIN
L22P >gi|7440984|pir||G69489 LSU ribosomal protein L22P
(rpl22P) homolog - Archaeoglobus fulgidus
>gi|2648643|gb|AAB89352.1| (AE000971) LSU ribosomal
protein L22P (rpl22P) [Archaeoglobus fulgidus]
Length = 155
Score = 123 bits (305), Expect = 1e-27
Identities = 62/149 (41%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Query: 4 RFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPL 63
R +Y+++ D + A+A G ++ IS K AVE+CR +RG + +A + L+DV+ ++R +P
Sbjct: 5 RVNYAYKPEDETKAAKAMGYEMPISFKHAVEICRAIRGKKIEEARKLLEDVVEMKRAIPF 64
Query: 64 KRYNDSQGHKPG-KGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
KR+ H+ G + + GRYP K AK + KVL N + NA+ KGLD + L I+H A +G
Sbjct: 65 KRHKKKVAHRRGLEKWYAGRYPQKAAKYVLKVLRNLEANAEYKGLDVENLVIVHAQAQKG 124
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVE 151
V+ + PRAFGR TP +Q T +E+V E
Sbjct: 125 RVIERYMPRAFGRATPRFQQLTTVELVAE 153
>sp|Q9UXA2|RL22_SULSO 50S RIBOSOMAL PROTEIN L22P >gi|6015763|emb|CAB57590.1| (Y18930)
ribosomal protein L22 (HMAL22) [Sulfolobus solfataricus]
Length = 157
Score = 113 bits (281), Expect = 9e-25
Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
Y + D ++A+A RD+ S + VC+ +RGM LNDA +L+ V+ + +P RY
Sbjct: 6 YPQLDVDELKIAKAVIRDVPASIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRY 65
Query: 67 NDSQGHKPGKG----FGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
N HK GRYP K + + KVL NA+ NA KGLD DKL I HIAAH+G
Sbjct: 66 NKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKG 125
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEEV 153
L+ + PRAFGR T +T++IEV++EEV
Sbjct: 126 ITLQRYMPRAFGRATAKYRRTSNIEVILEEV 156
>gb|AAK41013.1| LSU ribosomal protein L22AB (rpl22AB) [Sulfolobus solfataricus]
Length = 157
Score = 113 bits (279), Expect = 2e-24
Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
Y + D ++A+A RD+ S + VC+ +RGM LNDA +L+ V+ + +P RY
Sbjct: 6 YPQLDVDELKIAKAVIRDVPESIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRY 65
Query: 67 NDSQGHKPGKG----FGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
N HK GRYP K + + KVL NA+ NA KGLD DKL I HIAAH+G
Sbjct: 66 NKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKG 125
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEEV 153
L+ + PRAFGR T +T++IEV++EEV
Sbjct: 126 ITLQRYMPRAFGRATAKYRRTSNIEVILEEV 156
>emb|CAC12390.1| (AL445067) probable 50S ribosomal protein L22 [Thermoplasma
acidophilum]
Length = 151
Score = 107 bits (264), Expect = 9e-23
Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 18 ARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGHKPGKG 77
A+A R+ IS K +V + LRGM L+ A +D VI +P RY DS H+PG
Sbjct: 16 AKARIREADISLKDSVNIAHHLRGMPLSRAKEIIDAVINKTYAIPYFRYLDSVSHRPG-- 73
Query: 78 FGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPT 137
GPGRYPVK AKA K++L N +NNA+ KGL+ D L I HIAA++G +++ + P+A+GR
Sbjct: 74 VGPGRYPVKAAKAFKQLLENVENNAEFKGLNTDNLVIKHIAANKGRMIKKYTPKAYGRAG 133
Query: 138 PFNEQTTHIEVVVEE 152
+ ++E++V E
Sbjct: 134 ANFKDLINLEIIVTE 148
>sp|P35266|R171_HORVU 60S RIBOSOMAL PROTEIN L17-1 >gi|19102|emb|CAA44598.1| (X62724)
ribosomal protein L17-1 [Hordeum vulgare]
Length = 170
Score = 99.8 bits (245), Expect = 1e-20
Identities = 60/150 (40%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + A+A GRDLR+ K E LR M LN A RYL+DV+A ++ +P +RY
Sbjct: 4 YSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRY 63
Query: 67 NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
G K + G GR+P K AK + +L NA++NA+ KGLD D L I HI ++
Sbjct: 64 CRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 QKQRRRTYRAHGRINPYMSNPCHIELILSE 153
>sp|P15008|RL22_HALHA 50S RIBOSOMAL PROTEIN L22P (HHAL22) >gi|71284|pir||R5HSH2 ribosomal
protein L22 [validated] - Halobacterium salinarum
>gi|43551|emb|CAA33092.1| (X14967) ribosomal protein L22
(AA 1-156) [Halobacterium halobium]
>gi|2425181|dbj|BAA22275.1| (AB006961) ribosomal protein
L22 [Halobacterium halobium] >gi|10581164|gb|AAG19941.1|
(AE005077) 50S ribosomal protein L22P; Rpl22p
[Halobacterium sp. NRC-1]
Length = 156
Score = 99.8 bits (245), Expect = 1e-20
Identities = 57/141 (40%), Positives = 78/141 (54%), Gaps = 1/141 (0%)
Query: 13 DPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH 72
D E A+A R+ IS K + + RE+ G + DA YL VI R VP K++N GH
Sbjct: 10 DSEASAKAMLRERSISLKHSKAIAREISGETVADAKEYLQAVIDEERSVPFKQHNSGVGH 69
Query: 73 KPG-KGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPR 131
+ G+ GRYP K +K K+L N NNA Q+G D D++ I H+A H+ +G PR
Sbjct: 70 RNDIDGWDAGRYPEKASKDFLKLLSNVSNNADQQGFDADEMVIEHVAPHKVGESQGRKPR 129
Query: 132 AFGRPTPFNEQTTHIEVVVEE 152
A GR T +N +E+VV E
Sbjct: 130 AMGRATTWNATLCDVEIVVTE 150
>pir||S32578 ribosomal protein L17.1, cytosolic - barley
Length = 170
Score = 99.8 bits (245), Expect = 1e-20
Identities = 60/150 (40%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + A+A GRDLR+ K E LR M LN A RYL+DV+A ++ +P +RY
Sbjct: 4 YSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRY 63
Query: 67 NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
G K + G GR+P K AK + +L NA++NA+ KGLD D L I HI ++
Sbjct: 64 CRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 QKQRRRTYRAHGRINPYMSNPCHIELILSE 153
>sp|P10970|RL22_HALMA 50S RIBOSOMAL PROTEIN L22P (HMAL22) (HL23) >gi|2144775|pir||R5HS22
ribosomal protein L22 [validated] - Haloarcula
marismortui >gi|148806|gb|AAA86864.1| (J05222) ribosomal
protein L22 [Haloarcula marismortui]
Length = 155
Score = 99.5 bits (244), Expect = 2e-20
Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 13 DPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH 72
DP+ A+A R+ ++S K + + RE++G +A+ YL+ VI +PVP K++N GH
Sbjct: 10 DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGH 69
Query: 73 KPG-KGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPR 131
K G+ GRYP K +KA +L NA NA +G D + + I H+AAH+ +G PR
Sbjct: 70 KSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPR 129
Query: 132 AFGRPTPFNEQTTHIEVVVEE 152
A GR + +N +E+++EE
Sbjct: 130 AMGRASAWNSPQVDVELILEE 150
>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
>gi|226205|prf||1501256B ribosomal protein L23
[Haloarcula marismortui]
Length = 154
Score = 99.5 bits (244), Expect = 2e-20
Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 13 DPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH 72
DP+ A+A R+ ++S K + + RE++G +A+ YL+ VI +PVP K++N GH
Sbjct: 9 DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGH 68
Query: 73 KPG-KGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPR 131
K G+ GRYP K +KA +L NA NA +G D + + I H+AAH+ +G PR
Sbjct: 69 KSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPR 128
Query: 132 AFGRPTPFNEQTTHIEVVVEE 152
A GR + +N +E+++EE
Sbjct: 129 AMGRASAWNSPQVDVELILEE 149
>sp|O48557|RL17_MAIZE 60S RIBOSOMAL PROTEIN L17 >gi|7440981|pir||T01410 ribosomal protein
L17 - maize >gi|2668748|gb|AAB88619.1| (AF034948)
ribosomal protein L17 [Zea mays]
Length = 171
Score = 97.9 bits (240), Expect = 6e-20
Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS + +P + A+A GRDLR+ K E LR + L A RYL+DVIA ++ +P +RY
Sbjct: 4 YSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRY 63
Query: 67 NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
G K G GR+PVK A+ I +L NA++NA KGLD D L + HI ++
Sbjct: 64 CGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQA 123
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 QKQRRRTYRAHGRINPYMSSPCHIELILSE 153
>prf||1506338B ribosomal protein L22 [Halobacterium halobium]
Length = 156
Score = 96.3 bits (236), Expect = 2e-19
Identities = 56/141 (39%), Positives = 77/141 (53%), Gaps = 1/141 (0%)
Query: 13 DPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH 72
D E A+A R+ IS K + + RE+ G + DA YL VI R VP K++N GH
Sbjct: 10 DSEASAKAMLRERSISLKHSKAIAREISGETVADAKEYLQAVIDEERSVPFKQHNSGVGH 69
Query: 73 KPG-KGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPR 131
+ G+ GRYP K +K K+L N NNA Q+G D ++ I H+A H+ +G PR
Sbjct: 70 RNDIDGWDAGRYPEKASKDFLKLLSNVSNNADQQGFDAVEMVIEHVAPHKVGESQGRKPR 129
Query: 132 AFGRPTPFNEQTTHIEVVVEE 152
A GR T +N +E+VV E
Sbjct: 130 AMGRATTWNATLCDVEIVVTE 150
>pir||S32579 ribosomal protein L17.2, cytosolic - barley
Length = 172
Score = 95.2 bits (233), Expect = 4e-19
Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + A+A G+DLR+ K E LR M L A RYL+DV+A ++ +P +RY
Sbjct: 4 YSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRY 63
Query: 67 NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
G K + G GR+P K A+ + +L NA++NA+ KGLD D L I HI ++
Sbjct: 64 CRGVGRTAQVKNRRPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQA 123
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 QKQRRRTYRAHGRINPYMSNPCHIELILSE 153
>sp|P35267|R172_HORVU 60S RIBOSOMAL PROTEIN L17-2 >gi|19104|emb|CAA44599.1| (X62725)
ribosomal protein L17-2 [Hordeum vulgare]
Length = 172
Score = 94.8 bits (232), Expect = 5e-19
Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + A+A G+DLR+ K E LR M L A RYL+DV+A ++ +P +RY
Sbjct: 4 YSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRY 63
Query: 67 NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
G K + G GR+P K A+ + +L NA++NA+ KGLD D L I HI ++
Sbjct: 64 CRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQA 123
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 QKQRRRTYRAHGRINPYMSNPCHIELILSE 153
>gb|AAF61071.1|AF220552_1 (AF220552) ribosomal protein L17 [Paralichthys olivaceus]
Length = 184
Score = 93.6 bits (229), Expect = 1e-18
Identities = 55/149 (36%), Positives = 82/149 (54%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + ++ G +LR+ K E + ++GM + A +YL DVI + VP +RY
Sbjct: 4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKANKYLRDVIVQHQCVPFRRY 63
Query: 67 NDSQGH-KPGKGFG--PGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N G K FG GR+P K A+ + +L NA++NA+ KGLD D L I HI ++ P
Sbjct: 64 NGGVGRCAQAKQFGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+R RA GR P+ HIE+++ E
Sbjct: 124 KMRRRTYRAHGRINPYMSSPCHIEMILTE 152
>sp|P37380|RL17_PODCA 60S RIBOSOMAL PROTEIN L17 (L23) >gi|479492|pir||S34122 ribosomal
protein L17.e, cytosolic - hydromedusa (Podocoryne
carnea) >gi|312500|emb|CAA50504.1| (X71382) 60S
ribosomal protein L17 [Podocoryne carnea]
Length = 183
Score = 92.8 bits (227), Expect = 2e-18
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + +A G LR+ K E + ++ M + A RYL DVIA ++ +P +R+
Sbjct: 4 YSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRF 63
Query: 67 NDSQGHKP-GKGFG--PGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
G K K F GR+PVK A+ + +L NA++NA KGLD D L I HI +R P
Sbjct: 64 CGGVGRKAQAKAFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+R RA GR P+ HIE++V E
Sbjct: 124 YMRRRTYRAHGRINPYMSSPCHIEMIVSE 152
>gi|4506617 ribosomal protein L17 [Homo sapiens]
>gi|132799|sp|P18621|RL17_HUMAN 60S RIBOSOMAL PROTEIN
L17 (L23) >gi|71281|pir||R5HU22 ribosomal protein L17,
cytosolic - human >gi|34199|emb|CAA37793.1| (X53777)
putative ribosomal protein (AA 1-184) [Homo sapiens]
Length = 184
Score = 91.7 bits (224), Expect = 4e-18
Identities = 52/149 (34%), Positives = 81/149 (53%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + ++ G +LR+ K E + ++GM + A +YL DV ++ VP +RY
Sbjct: 4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRY 63
Query: 67 NDSQGHKPGK---GFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N G G+ GR+P K A+ + +L NA++NA+ KGLD D L I HI ++ P
Sbjct: 64 NGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+R RA GR P+ HIE+++ E
Sbjct: 124 KMRRRTYRAHGRINPYMSSPCHIEMILTE 152
>sp|P24049|RL17_RAT 60S RIBOSOMAL PROTEIN L17 (L23) (AMINO ACID STARVATION-INDUCED
PROTEIN) (ASI) >gi|71282|pir||R5RT17 ribosomal protein
L17, cytosolic [validated] - rat
>gi|57111|emb|CAA42765.1| (X60212) ribosomal protein L22
[Rattus norvegicus] >gi|57682|emb|CAA41278.1| (X58389)
ribosomal protein L17 [Rattus rattus]
Length = 184
Score = 91.7 bits (224), Expect = 4e-18
Identities = 52/149 (34%), Positives = 81/149 (53%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + ++ G +LR+ K E + ++GM + A +YL DV ++ VP +RY
Sbjct: 4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRY 63
Query: 67 NDSQGHKPGK---GFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N G G+ GR+P K A+ + +L NA++NA+ KGLD D L I HI ++ P
Sbjct: 64 NGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+R RA GR P+ HIE+++ E
Sbjct: 124 KMRRRTYRAHGRINPYMSSPCHIEMILTE 152
>gi|6322284 Ribosomal protein L17B (L20B) (YL17); Rpl17bp [Saccharomyces
cerevisiae] >gi|1173063|sp|P46990|R172_YEAST 60S
RIBOSOMAL PROTEIN L17-B (YL17-B) >gi|1071989|pir||S56960
ribosomal protein L17.e.B, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|1008376|emb|CAA89472.1|
(Z49452) ORF YJL177w [Saccharomyces cerevisiae]
Length = 184
Score = 91.7 bits (224), Expect = 4e-18
Identities = 56/149 (37%), Positives = 79/149 (52%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
Y + +P + A A G LR+S K E + + G L A +YLD V+ +R +P +R+
Sbjct: 4 YGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLDQVLDHQRAIPFRRF 63
Query: 67 NDSQGHKP-GKGFG--PGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N S G GK FG R+P K K ++ +L NA NA+ KGLD KL + HI ++ P
Sbjct: 64 NSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR + +HIE+VV E
Sbjct: 124 KQRRRTYRAHGRINKYESSPSHIELVVTE 152
>gi|6322668 Ribosomal protein L17A (L20A) (YL17); Rpl17ap [Saccharomyces
cerevisiae] >gi|548748|sp|P05740|R171_YEAST 60S
RIBOSOMAL PROTEIN L17-A (YL17-A) >gi|538620|pir||S38012
ribosomal protein L17.e.A, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|486317|emb|CAA82023.1|
(Z28180) ORF YKL180w [Saccharomyces cerevisiae]
Length = 184
Score = 90.1 bits (220), Expect = 1e-17
Identities = 55/149 (36%), Positives = 79/149 (52%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
Y + +P + A A G LR+S K E + + G L A +YL+ V+ +R +P +R+
Sbjct: 4 YGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRF 63
Query: 67 NDSQGHKP-GKGFG--PGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N S G GK FG R+P K K ++ +L NA NA+ KGLD KL + HI ++ P
Sbjct: 64 NSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR + +HIE+VV E
Sbjct: 124 KQRRRTYRAHGRINKYESSPSHIELVVTE 152
>gi|11428221 similar to ribosomal protein L17 (H. sapiens) [Homo sapiens]
Length = 184
Score = 90.1 bits (220), Expect = 1e-17
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + ++ G +LR+ K E + ++GM + A +YL DV ++ VP +RY
Sbjct: 4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRY 63
Query: 67 NDSQGHKPGK---GFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N G G+ GR+P K A+ + +L N ++NA+ KGLD D L I HI ++ P
Sbjct: 64 NGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNTESNAELKGLDVDSLVIEHIQVNKAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+R RA GR P+ HIE+++ E
Sbjct: 124 KMRRRTYRAHGRINPYMSSPCHIEMILTE 152
>gi|11431907 similar to ribosomal protein L17 (H. sapiens) [Homo sapiens]
Length = 184
Score = 87.8 bits (214), Expect = 6e-17
Identities = 50/149 (33%), Positives = 79/149 (52%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + ++ G +LR+ K E + ++GM + A +YL DV ++ VP + Y
Sbjct: 4 YSLDPENPTKSGKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRHY 63
Query: 67 NDSQGHKPGK---GFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N G G+ GR+P K A+ + +L NA++NA+ KGLD D L I HI ++ P
Sbjct: 64 NGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+ RA GR P+ HIE+++ E
Sbjct: 124 KMHRRTYRAHGRINPYMSSPCHIEMILTE 152
>gb|AAF99734.1|AC004557_13 (AC004557) F17L21.19 [Arabidopsis thaliana]
Length = 172
Score = 86.2 bits (210), Expect = 2e-16
Identities = 52/138 (37%), Positives = 74/138 (52%), Gaps = 4/138 (2%)
Query: 19 RASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH----KP 74
+A G DLR+ K E +R + LN A RYL+DVIA ++ +P R+ G K
Sbjct: 12 KARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKN 71
Query: 75 GKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFG 134
G GR+P K A+ + +L NA++NA+ KGLD D L I HI ++ R RA G
Sbjct: 72 RHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHG 131
Query: 135 RPTPFNEQTTHIEVVVEE 152
R P+ HIE+++ E
Sbjct: 132 RINPYMSNPCHIELILSE 149
>pir||T40136 60s ribosomal protein L17 - fission yeast (Schizosaccharomyces
pombe) >gi|2239235|emb|CAB10153.1| (Z97211) 60s
ribosomal protein L17 [Schizosaccharomyces pombe]
Length = 187
Score = 85.4 bits (208), Expect = 3e-16
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 16 RMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGHKP- 74
+ A+A G LR K + EV + GM L A +LD+V ++ VP +R+N G
Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72
Query: 75 GKGFG--PGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRA 132
GK FG R+PVK K +L NA+ NA+ KGLD DKL I H+ + P R RA
Sbjct: 73 GKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRA 132
Query: 133 FGRPTPFNEQTTHIEVVVEE 152
GR T + +HIE++V E
Sbjct: 133 HGRVTAYLSSPSHIEIIVAE 152
>pir||T02163 ribosomal protein L17, cytosolic - Arabidopsis thaliana
>gi|3176668|gb|AAC18792.1| (AC004393) Similar to
ribosomal protein L17 gb|X62724 from Hordeum vulgare.
ESTs gb|Z34728, gb|F19974, gb|T75677 and gb|Z33937 come
from this gene. [Arabidopsis thaliana]
Length = 175
Score = 84.7 bits (206), Expect = 5e-16
Identities = 53/150 (35%), Positives = 78/150 (51%), Gaps = 4/150 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS + + + +A G DLR+ K E +R + L A RYL+DVIA ++ +P R+
Sbjct: 4 YSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRF 63
Query: 67 NDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRG 122
G K G GR+P K A+ + +L NA++NA+ KGLD D L I HI ++
Sbjct: 64 CRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQA 123
Query: 123 PVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 AKQRRRTYRAHGRINPYMSNPCHIELILSE 153
>sp|O59794|RL17_SCHPO 60S RIBOSOMAL PROTEIN L17 >gi|7490004|pir||T41333 60s ribosomal
protein - fission yeast (Schizosaccharomyces pombe)
>gi|2995357|emb|CAA18285.1| (AL022243) 60s ribosomal
protein l17. [Schizosaccharomyces pombe]
Length = 187
Score = 83.1 bits (202), Expect = 2e-15
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 16 RMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGHKP- 74
+ A+A G LR K + EV + GM L A +LD+V ++ VP +R+N G
Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72
Query: 75 GKGFG--PGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRA 132
GK FG R+PVK +L NA+ NA+ KGLD DKL I H+ + P R RA
Sbjct: 73 GKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRA 132
Query: 133 FGRPTPFNEQTTHIEVVVEE 152
GR T + +HIE++V E
Sbjct: 133 HGRVTAYLSSPSHIEIIVAE 152
>emb|CAC18189.1| (AL451014) probable ribosomal protein L17.e.A (cytosolic)
[Neurospora crassa]
Length = 186
Score = 83.1 bits (202), Expect = 2e-15
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
Y+ P + AR+ G LR+S K E + + G L A ++L++V+ + VP++RY
Sbjct: 4 YAATEIAPAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRY 63
Query: 67 NDSQGHKP-GKGFGPGR--YPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
G GK FG R +P K A+ + +L NA+ NA KGLD L + HI ++ P
Sbjct: 64 AGGTGRAAQGKQFGVSRARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAP 123
Query: 124 VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
R RA GR P+ HIE+++ E
Sbjct: 124 KQRRRTYRAHGRINPYMSNPCHIELILTE 152
>gb|AAF46194.1| (AE003438) CG3203 gene product [alt 1] [Drosophila melanogaster]
>gi|7290749|gb|AAF46195.1| (AE003438) CG3203 gene
product [alt 2] [Drosophila melanogaster]
Length = 186
Score = 81.1 bits (197), Expect = 6e-15
Identities = 56/156 (35%), Positives = 82/156 (51%), Gaps = 8/156 (5%)
Query: 1 MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRP 60
MGR YS ++ + + +A G +LR+ K E + ++ M L A RYL VI +
Sbjct: 1 MGR---YSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKEC 57
Query: 61 VPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIH 116
VP +R+N G K K GR+P K A+ + ++L NA+ NA KGLD D+L + H
Sbjct: 58 VPFRRFNGGVGRCAQAKQWKTT-QGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHH 116
Query: 117 IAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
I +R LR RA GR P+ H+EV++ E
Sbjct: 117 IQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILTE 152
>emb|CAC10392.1| (AL049597) dJ612B15.1 (novel protein similar to 60S ribosomal
protein L17 (RPL17)) [Homo sapiens]
Length = 184
Score = 78.8 bits (191), Expect = 3e-14
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRY 66
YS +P + ++ G +LR+ K E + ++GM + A +YL DV ++ +P +RY
Sbjct: 4 YSLDPENPMKSCKSRGSNLRVHFKDTRETAQAIKGMHIRKATKYLKDVTLQKQCIPFRRY 63
Query: 67 NDSQG---HKPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGP 123
N G G+ GR+P K A+ + + NA+ N + KGLD D L I +I ++ P
Sbjct: 64 NGGVGKCAQAKQWGWTQGRWPKKSAEFLLHMFKNAEGNTELKGLDVDSLVIEYIQVNKAP 123
Query: 124 -VLRGWYPRAFGRPTPFNEQTTHIEVVVEE 152
+LR Y RA GR + HIE+++ E
Sbjct: 124 KMLRRTY-RAHGRINSYMSSPWHIEMILTE 152
>pir||A61192 ribosomal protein homolog PD-1 - human
Length = 133
Score = 69.5 bits (167), Expect = 2e-11
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 34 EVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGHKPGK---GFGPGRYPVKVAKA 90
E + ++GM + A +YL DV ++ VP +RYN G G+ GR+P K A+
Sbjct: 18 ETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEF 77
Query: 91 IKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGR 135
+ +L NA++NA+ KGLD D L I HI ++ P +R RA GR
Sbjct: 78 LLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGR 122
>sp|Q9ZI45|RL22_AQUPY 50S RIBOSOMAL PROTEIN L22 >gi|4165870|gb|AAD08790.1| (AF040100)
ribosomal protein L22 [Aquifex pyrophilus]
Length = 133
Score = 67.5 bits (162), Expect = 8e-11
Identities = 37/83 (44%), Positives = 51/83 (60%), Gaps = 5/83 (6%)
Query: 75 GKGFGPGRYPVKV-----AKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWY 129
GK G Y +KV A+ +K+L +A NA+QKGLD D+L I A RGP+L+ W
Sbjct: 43 GKDVGEALYLLKVIPKRAARIAEKLLKSAIANAEQKGLDLDRLYIKKAVADRGPILKKWI 102
Query: 130 PRAFGRPTPFNEQTTHIEVVVEE 152
PRA GR T ++ +HI +V+EE
Sbjct: 103 PRAHGRATMVRKRLSHITIVLEE 125
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.429
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61783130
Number of Sequences: 2977
Number of extensions: 2517715
Number of successful extensions: 4899
Number of sequences better than 1.0e-10: 35
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4857
Number of HSP's gapped (non-prelim): 36
length of query: 155
length of database: 189,106,746
effective HSP length: 50
effective length of query: 105
effective length of database: 159,182,396
effective search space: 16714151580
effective search space used: 16714151580
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)