BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2397 (rps4E) DE:SSU ribosomal protein S4E (rps4E)
(243 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75146 ssu ribosomal protein s4e (rps4e) PAB2397 - Pyrococc... 501 e-141
sp|O59430|RS4E_PYRHO 30S RIBOSOMAL PROTEIN S4E >gi|7440147|pir||... 493 e-138
sp|Q9YF85|RS4E_AERPE 30S RIBOSOMAL PROTEIN S4E >gi|7440150|pir||... 252 4e-66
sp|P54039|RS4E_METJA 30S RIBOSOMAL PROTEIN S4E >gi|2119060|pir||... 247 7e-65
sp|O26123|RS4E_METTH 30S RIBOSOMAL PROTEIN S4E >gi|7440148|pir||... 242 3e-63
sp|P14023|RS4E_METVA 30S RIBOSOMAL PROTEIN S4E (ORF C) >gi|70873... 225 4e-58
gi|11499497 SSU ribosomal protein S4E (rps4E) [Archaeoglobus ful... 207 1e-52
gb|AAK41007.1| SSU ribosomal protein S4E (rps4E) [Sulfolobus sol... 183 2e-45
sp|Q9UX94|RS4E_SULSO 30S RIBOSOMAL PROTEIN S4E >gi|6015771|emb|C... 183 2e-45
gb|AAF60569.1| (AC024780) contains similarity to TR:O62739 [Caen... 162 4e-39
sp|O05634|RS4E_SULAC 30S RIBOSOMAL PROTEIN S4E >gi|2052258|emb|C... 161 6e-39
gb|AAF49846.1| (AE003539) RpS4 gene product [alt 2] [Drosophila ... 154 1e-36
pir||T01203 ribosomal protein S4 - maize >gi|2345154|gb|AAB67831... 152 3e-36
gb|AAC38966.1| (AF005421) ribosomal protein S4 homolog [Trypanos... 152 3e-36
sp|O22424|RS4_MAIZE 40S RIBOSOMAL PROTEIN S4 >gi|7440142|pir||T0... 152 5e-36
gi|6321997 Ribosomal protein S4B (YS6) (rp5) (S7B); Rps4bp [Sacc... 151 7e-36
gb|AAC32105.1| (AF051136) ribosomal protein S4 X isoform [Monode... 151 9e-36
sp|P41042|RS4_DROME 40S RIBOSOMAL PROTEIN S4 >gi|478316|pir||JN0... 150 2e-35
gb|AAC32106.1| (AF051137) ribosomal protein S4 Y isoform [Monode... 149 3e-35
dbj|BAB11167.1| (AB010697) 40S ribosomal protein S4 [Arabidopsis... 147 1e-34
emb|CAB96734.1| (AL365154) 40S ribosomal protein S4, copy 1 [Lei... 147 1e-34
sp|P47836|RS4_CHICK 40S RIBOSOMAL PROTEIN S4 >gi|1362730|pir||A5... 146 2e-34
pir||T48480 ribosomal protein S4 - Arabidopsis thaliana >gi|7546... 146 2e-34
sp|P87158|RS4_SCHPO 40S RIBOSOMAL PROTEIN S4 >gi|7489989|pir||T3... 145 7e-34
pir||T43429 ribosomal protein S4 - fission yeast (Schizosaccharo... 145 7e-34
pir||T39917 40s ribosomal protein s4-2 - fission yeast (Schizos... 145 7e-34
emb|CAB93014.1| (AL357232) 40s ribosomal protein s4 [Schizosacch... 145 7e-34
prf||1617101C ribosomal protein S4 [Rattus norvegicus] 144 9e-34
sp|P47961|RS4_CRIGR 40S RIBOSOMAL PROTEIN S4 >gi|453574|dbj|BAA0... 144 9e-34
gi|4506725 ribosomal protein S4, X-linked [Homo sapiens] >gi|667... 144 1e-33
pir||PC4159 ribosomal protein S4 - cat (fragment) >gi|950115|gb|... 144 1e-33
sp|P22510|RS4E_HALMA 30S RIBOSOMAL PROTEIN S4E (HS3) >gi|279639|... 144 1e-33
gi|4506727 ribosomal protein S4, Y-linked [Homo sapiens] >gi|114... 143 1e-33
sp|P46300|RS4_SOLTU 40S RIBOSOMAL PROTEIN S4 >gi|1076674|pir||S4... 143 2e-33
dbj|BAA87933.1| (AB024286) ribosomal protein S4Y (RPS4Y) [Macaca... 143 3e-33
sp|P47837|RS4_CANAL 40S RIBOSOMAL PROTEIN S4 (S7) >gi|1051260|gb... 142 4e-33
sp|O59950|RS4_YARLI 40S RIBOSOMAL PROTEIN S4 (S7) >gi|2997729|gb... 141 8e-33
sp|P51405|RS4_DICDI 40S RIBOSOMAL PROTEIN S4 >gi|3647233|gb|AAD0... 141 8e-33
sp|P46299|RS4_GOSHI 40S RIBOSOMAL PROTEIN S4 >gi|629496|pir||S45... 140 1e-32
prf||2110340A ribosomal protein S7 [Tetrahymena thermophila] 138 9e-32
pir||A53254 ribosomal protein S4 - human 137 1e-31
sp|P49204|RS4_ARATH 40S RIBOSOMAL PROTEIN S4 136 2e-31
gb|AAG19948.1| (AE005077) 30S ribosomal protein S4E; Rps4e [Halo... 136 3e-31
emb|CAB40397.1| (AJ010592) 40S ribosomal protein S4 [Guillardia ... 133 2e-30
sp|Q56230|RS4E_THEAC 30S RIBOSOMAL PROTEIN S4E >gi|7484229|pir||... 128 7e-29
gb|AAC24585.1| (AF071891) 40S ribosomal protein S4 [Prunus armen... 127 1e-28
gb|AAB86513.2| (AC002329) putative ribosomal protein S4 [Arabido... 125 6e-28
dbj|BAB10257.1| (AB025632) ribosomal protein S4 [Arabidopsis tha... 122 3e-27
sp|P49398|RS4_ORYSA 40S RIBOSOMAL PROTEIN S4 (SCAR PROTEIN SS620... 115 4e-25
gb|AAA36597.1| (M22146) scar protein [Homo sapiens] 115 4e-25
sp|P55832|RS4_HORSE 40S RIBOSOMAL PROTEIN S4 >gi|4432936|dbj|BAA... 101 9e-21
sp|Q40941|RS4_CHLS6 40S RIBOSOMAL PROTEIN S4 >gi|1401207|gb|AAD0... 99 3e-20
sp|P79103|RS4_BOVIN 40S RIBOSOMAL PROTEIN S4 >gi|4432939|dbj|BAA... 99 5e-20
emb|CAC17636.1| (AL137162) dJ843L14.2 (novel protein similar to ... 96 3e-19
pir||S62681 ribosomal protein YS7 homolog - Emericella nidulans 91 1e-17
sp|P79183|RS4Y_MACFU 40S RIBOSOMAL PROTEIN S4, Y ISOFORM >gi|443... 83 2e-15
gb|AAB63866.1| (U97374) ribosomal protein S4 homolog [Schizosacc... 75 8e-13
pir||T04113 probable 40S ribosomal protein S4 - rice (fragment) ... 71 2e-11
>pir||D75146 ssu ribosomal protein s4e (rps4e) PAB2397 - Pyrococcus abyssi
(strain Orsay) >gi|5457761|emb|CAB49251.1| (AJ248284)
SSU ribosomal protein S4E (rps4E) [Pyrococcus abyssi]
Length = 243
Score = 501 bits (1275), Expect = e-141
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR
Sbjct: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA
Sbjct: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFE 180
NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFE
Sbjct: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFE 180
Query: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI 240
KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI
Sbjct: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI 240
Query: 241 SLP 243
SLP
Sbjct: 241 SLP 243
>sp|O59430|RS4E_PYRHO 30S RIBOSOMAL PROTEIN S4E >gi|7440147|pir||B71186 probable
ribosomal protein S4 - Pyrococcus horikoshii
>gi|3258198|dbj|BAA30881.1| (AP000007) 243aa long
hypothetical 30S ribosomal protein S4 [Pyrococcus
horikoshii]
Length = 243
Score = 493 bits (1255), Expect = e-138
Identities = 235/243 (96%), Positives = 243/243 (99%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
MARKGPKRHLKRLAAP+SWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR
Sbjct: 1 MARKGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
EARKILNEGKFLVDG+VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKL+LHPISEEEA
Sbjct: 61 EARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEA 120
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFE 180
NIKPLRIRNKRMVKGAK+QLNFHDGTNHLIPL+EKDNYFTSYTVLMKVPEREI+EVLPFE
Sbjct: 121 NIKPLRIRNKRMVKGAKVQLNFHDGTNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFE 180
Query: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI 240
KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVG+DKP+I
Sbjct: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGKDKPKI 240
Query: 241 SLP 243
SLP
Sbjct: 241 SLP 243
>sp|Q9YF85|RS4E_AERPE 30S RIBOSOMAL PROTEIN S4E >gi|7440150|pir||C72727 probable
ribosomal protein S4 APE0356 - Aeropyrum pernix (strain
K1) >gi|5103995|dbj|BAA79311.1| (AP000059) 257aa long
hypothetical 30S ribosomal protein S4 [Aeropyrum pernix]
Length = 257
Score = 252 bits (636), Expect = 4e-66
Identities = 131/251 (52%), Positives = 168/251 (66%), Gaps = 11/251 (4%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
MAR G +R LK LAAP W I RK YKWAV+PRPGPH S+PLL IVR+ LGYA+TAR
Sbjct: 5 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 64
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
EARK+++EG F VDG VRKDYKFPVG MDV+ + +TGE +R+LP + LHPI EEE
Sbjct: 65 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEG 124
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSE-----KDNYFTSYTVLMKVPEREILE 175
++KP+RI NK VKG +QLN HDG N L+ + + +D Y T T+L+ VP +EI
Sbjct: 125 DLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKG 184
Query: 176 VLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGW---PDVVTIEDEEGELFDTLKEYAFV 232
+ F +GA + G+NV R G + ++K GW +VT+ED G LF T +Y FV
Sbjct: 185 HIKFGEGAIAIIVGGRNVGRVGVVKSVQK---GWGRKRTLVTLEDASGNLFQTSLDYVFV 241
Query: 233 VGRDKPRISLP 243
+G D+P ISLP
Sbjct: 242 IGLDRPVISLP 252
>sp|P54039|RS4E_METJA 30S RIBOSOMAL PROTEIN S4E >gi|2119060|pir||D64358 ribosomal protein
S4E - Methanococcus jannaschii
>gi|1591170|gb|AAB98457.1| (U67497) SSU ribosomal
protein S4E [Methanococcus jannaschii]
Length = 244
Score = 247 bits (625), Expect = 7e-65
Identities = 129/247 (52%), Positives = 174/247 (70%), Gaps = 8/247 (3%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
MA+KGPKRHLKRLAAP W + RK +K+ VRP PG H M S+PLL IVRD L YA AR
Sbjct: 1 MAKKGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAR 60
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
EA+KI+ GK LVDGRVRK+ K PVG+MDVVS+P+ E+YRVL +R G++ L P E
Sbjct: 61 EAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENP 118
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLS-----EKDNYFTSYTVLMKVPEREILE 175
++K +I+NK ++KG IQLN HDG N +I +S E+D Y T T+L+ +PE+EI
Sbjct: 119 DVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKA 178
Query: 176 VLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR 235
+PFE G ++T GK+V +IVEI++ + +PD+VT+E+ +GE F T+K+Y FVVG
Sbjct: 179 HIPFEVGKLAYITGGKHVGDFAKIVEIERRGI-YPDIVTLENMDGEKFKTVKDYVFVVGD 237
Query: 236 DKPRISL 242
++P I L
Sbjct: 238 EEPIIKL 244
>sp|O26123|RS4E_METTH 30S RIBOSOMAL PROTEIN S4E >gi|7440148|pir||H69066 ribosomal protein
S4 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621043|gb|AAB84516.1| (AE000795) ribosomal
protein S4 [Methanobacterium thermoautotrophicum]
Length = 242
Score = 242 bits (611), Expect = 3e-63
Identities = 122/243 (50%), Positives = 156/243 (63%), Gaps = 4/243 (1%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
MA ++HLKR +P W I K YKW V+P PGPH + S+PL+ IVRD L A AR
Sbjct: 1 MAIMASRKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAR 60
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
EARKI+N G+ LVDGR RK+YKFPVG MDVVSIP TG+ YRVLP+ G+L+LHPI EE A
Sbjct: 61 EARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENA 120
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFE 180
K +I NK +KG + QLN HDG N+L D + V + +PE+EILE +PFE
Sbjct: 121 GFKLCKIVNKTTIKGGRTQLNLHDGRNYL----SDDEFRVGDVVKLSIPEQEILERIPFE 176
Query: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI 240
K + VT G++ G+I +I P+ IE G+ F TLK+Y FV+G+D+ I
Sbjct: 177 KDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGKDESVI 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>sp|P14023|RS4E_METVA 30S RIBOSOMAL PROTEIN S4E (ORF C) >gi|70873|pir||R3MX4 ribosomal
protein S4.eR - Methanococcus vannielii
>gi|44760|emb|CAA34692.1| (X16720) ORF c [Methanococcus
vannielii]
Length = 244
Score = 225 bits (568), Expect = 4e-58
Identities = 114/247 (46%), Positives = 168/247 (67%), Gaps = 8/247 (3%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
MA KGP++HLKRLAAP +W + RK + VRP PGPH+M S+PLL IVRD L A AR
Sbjct: 1 MAIKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAR 60
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
EA+KI+ GK L+DG RK+YK PVG+MDV+SIPE E+Y VL + G++ L E+
Sbjct: 61 EAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKT 118
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPL-----SEKDNYFTSYTVLMKVPEREILE 175
+K +I NK ++KG IQLN HDG N ++ + +E+D Y T +VL+ +PE+ ++
Sbjct: 119 GVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVG 178
Query: 176 VLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR 235
+ F +G ++T GK+V ++VE++K + + D+VT+E+++GE F T+K Y F+VG+
Sbjct: 179 HVEFNEGKLAYITGGKHVGEFAKVVEVEKRTL-YSDIVTLENKDGEKFKTIKPYVFIVGQ 237
Query: 236 DKPRISL 242
D+P IS+
Sbjct: 238 DEPVISM 244
>gi|11499497 SSU ribosomal protein S4E (rps4E) [Archaeoglobus fulgidus]
>gi|3914913|sp|O28366|RS4E_ARCFU 30S RIBOSOMAL PROTEIN
S4E >gi|7440149|pir||H69488 SSU ribosomal protein S4E
(rps4E) homolog - Archaeoglobus fulgidus
>gi|2648630|gb|AAB89340.1| (AE000971) SSU ribosomal
protein S4E (rps4E) [Archaeoglobus fulgidus]
Length = 235
Score = 207 bits (521), Expect = 1e-52
Identities = 111/237 (46%), Positives = 160/237 (66%), Gaps = 11/237 (4%)
Query: 9 HLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNE 68
H KRL+AP ++ I RK KW V+P PGPHN + +IPLL +VRD+L A T REAR+I++
Sbjct: 5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRIISA 63
Query: 69 GKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIR 128
G+ LVDG VRKDYKFPVG+ DVV+IP+ + YR+L + G+ I P E+A++K +I
Sbjct: 64 GEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYI--PKEVEDADLKLYKIT 121
Query: 129 NKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVT 188
NK +V+G K+QLN DGTN L ++Y T ++L+++PE+E+++ L FE+GA V +T
Sbjct: 122 NKTLVRGGKVQLNLFDGTNIL----GSNDYKTKDSILLRIPEKEVVDHLKFEEGALVMIT 177
Query: 189 QGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR---DKPRISL 242
G + GRI K P++VT+E EE ++ T+++Y FVVG+ DKP I L
Sbjct: 178 GGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDI-TTIEDYVFVVGKKDSDKPVIDL 233
>gb|AAK41007.1| SSU ribosomal protein S4E (rps4E) [Sulfolobus solfataricus]
Length = 239
Score = 183 bits (460), Expect = 2e-45
Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 9 HLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNE 68
H+ R AP I +K YKW VRP GPH++ SIPL ++RDYL A T REA+ I+ +
Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFD 62
Query: 69 GKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIR 128
GK LVDG+VRKDYK+PVG+MD+VSIP ++RVLP+ + + IS +EA K +RI
Sbjct: 63 GKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRII 122
Query: 129 NKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVT 188
NK +K +IQLN DG N L+ N+ T T+ +++P ++IL+ + +Y
Sbjct: 123 NKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFV 182
Query: 189 QGKNVARKGRI--VEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDK 237
G+NV G + + + KF V+T+E +G + T +GR+K
Sbjct: 183 GGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREK 233
>sp|Q9UX94|RS4E_SULSO 30S RIBOSOMAL PROTEIN S4E >gi|6015771|emb|CAB57598.1| (Y18930)
ribosomal protein S4E [Sulfolobus solfataricus]
Length = 239
Score = 183 bits (460), Expect = 2e-45
Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 9 HLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNE 68
H+ R AP I +K YKW VRP GPH++ SIPL ++RDYL A T REA+ I+ +
Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFD 62
Query: 69 GKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIR 128
GK LVDG+VRKDYK+PVG+MD+VSIP ++RVLP+ + + IS +EA K +RI
Sbjct: 63 GKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRII 122
Query: 129 NKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVT 188
NK +K +IQLN DG N L+ N+ T T+ +++P ++IL+ + +Y
Sbjct: 123 NKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFV 182
Query: 189 QGKNVARKGRI--VEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDK 237
G+NV G + + + KF V+T+E +G + T +GR+K
Sbjct: 183 GGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREK 233
>gb|AAF60569.1| (AC024780) contains similarity to TR:O62739 [Caenorhabditis
elegans]
Length = 259
Score = 162 bits (406), Expect = 4e-39
Identities = 91/241 (37%), Positives = 139/241 (56%), Gaps = 5/241 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP+ W +++ +AVRP PGPH +R S+PL +R+ L YA EA+
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KIL + VDG+VR +KFP G MDVV+I T E++R+L + G+ ++H I EA+ K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGA 183
++++ R V L DG P + + T++ + ++I + + FE G
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYP---DPHVKVNDTIVFNISTQKITDSVKFEPGN 178
Query: 184 YVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISL 242
+VT G+NV R G I ++ P G D++ I+D G F T FV+G+ +K +SL
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLP-GASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSL 237
Query: 243 P 243
P
Sbjct: 238 P 238
>sp|O05634|RS4E_SULAC 30S RIBOSOMAL PROTEIN S4E >gi|2052258|emb|CAA69089.1| (Y07778)
ribosomal protein S4E [Sulfolobus acidocaldarius]
Length = 244
Score = 161 bits (404), Expect = 6e-39
Identities = 84/233 (36%), Positives = 133/233 (57%), Gaps = 4/233 (1%)
Query: 9 HLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNE 68
H+ R AP + +K YKW +R R GPH ++ S+PL +++ YL T REA++I+ +
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 69 GKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIR 128
GK LVDG+VR+DYK+PVG+MDVV IP R++P+ + L IS E+A K +RI
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 129 NKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF--TSYTVLMKVPEREILEVLPFEKGAYVF 186
NK +K +QLN DG N L+ E Y T T+ +++PE++I ++G Y
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 187 VTQGKNVARKGRI--VEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDK 237
+ G+N G+I +++ K+ +VT+E ++G F T +G ++
Sbjct: 183 IIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGENE 235
>gb|AAF49846.1| (AE003539) RpS4 gene product [alt 2] [Drosophila melanogaster]
>gi|7294505|gb|AAF49847.1| (AE003539) RpS4 gene product
[alt 1] [Drosophila melanogaster]
Length = 261
Score = 154 bits (385), Expect = 1e-36
Identities = 85/241 (35%), Positives = 138/241 (56%), Gaps = 5/241 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP +W +++ +A RP GPH +R S+PLL +R+ L YA E
Sbjct: 3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI+ + VDG+VR D +P G MDV+++ +TGE +R++ + G+ ++H IS EEA K
Sbjct: 63 KIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGA 183
+++ ++ L HDG P + +V + + +I + + F+ G
Sbjct: 123 LCKVKKTQLGAKGVPFLVTHDGRTIRYP---DPLIHANDSVQVDIASGKITDYIKFDSGN 179
Query: 184 YVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISL 242
+T G+N+ R G +V ++ P G D+V I+D +G +F T F++G+ +KP ISL
Sbjct: 180 LCMITGGRNLGRVGTVVNRERHP-GSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISL 238
Query: 243 P 243
P
Sbjct: 239 P 239
>pir||T01203 ribosomal protein S4 - maize >gi|2345154|gb|AAB67831.1| (AF015522)
ribsomal protein S4 [Zea mays]
Length = 265
Score = 152 bits (381), Expect = 3e-36
Identities = 89/243 (36%), Positives = 138/243 (56%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALNYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + LVDG+VR D +P G MDV+SIP+T E+YR+L + G+ LHPI +E+A K
Sbjct: 63 SILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTMENYRLLYDTKGRFRLHPIRDEDAKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R+ + + LN +DG + PL + ++ T+ + + +I++ + F+
Sbjct: 123 LCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKAND-----TIKIDLETNKIMDFIKFDV 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V VT G+N R G I +K G+ D + +ED G F T F +G+ +KP +
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGGF-DTIHVEDSMGHQFATRMGNVFTIGKGNKPWV 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>gb|AAC38966.1| (AF005421) ribosomal protein S4 homolog [Trypanosoma cruzi]
>gi|2981292|gb|AAC38967.1| (AF005904) ribosomal protein
S4 homolog [Trypanosoma cruzi]
Length = 273
Score = 152 bits (381), Expect = 3e-36
Identities = 87/230 (37%), Positives = 128/230 (54%), Gaps = 4/230 (1%)
Query: 7 KRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66
K+HLKRL AP W + + +A RPR GPH +R + L+ I+R+ L YA A EA+ IL
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRAGPHKLRECMTLMIIIRNRLKYALNAAEAQMIL 62
Query: 67 NEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLR 126
+G VDG+ RKD K+PVG MDVV IP TG+ +R+L + G+ L + E E NIK L+
Sbjct: 63 RQGLVCVDGKPRKDTKYPVGFMDVVEIPRTGDRFRILYDVKGRFALVKVGEAEGNIKLLK 122
Query: 127 IRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVF 186
+ N G HDG H I + + T++ + E+++++++ G V
Sbjct: 123 VENVYTSTGRIPVAMTHDG--HRIRYPDPRTH-RGDTLVYNLKEKKVVDLIKSSNGKVVM 179
Query: 187 VTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRD 236
VT G N R G I+ I++ P G D+ ++D G F T FV+G+D
Sbjct: 180 VTGGANRGRIGEIMSIERHP-GAFDIARLKDAAGHEFATRASNIFVIGKD 228
>sp|O22424|RS4_MAIZE 40S RIBOSOMAL PROTEIN S4 >gi|7440142|pir||T01187 ribosomal protein
S4 type I - maize >gi|2331301|gb|AAB66899.1| (AF013487)
ribosomal protein S4 type I [Zea mays]
Length = 265
Score = 152 bits (379), Expect = 5e-36
Identities = 87/243 (35%), Positives = 140/243 (56%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + LVDG+VR D +P G MDV+SIP+T E+YR+L + G+ LHPI +E+A K
Sbjct: 63 SILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R+ + + LN +DG + PL + ++ T+ + + +I++ + F+
Sbjct: 123 LCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKAND-----TIKIDLETNKIVDFIKFDV 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V VT G+N R G +++ ++ G + + +ED G F T F +G+ +KP +
Sbjct: 178 GNVVMVTGGRNTGRVG-VIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWV 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>gi|6321997 Ribosomal protein S4B (YS6) (rp5) (S7B); Rps4bp [Saccharomyces
cerevisiae] >gi|6322605|ref|NP_012679.1| Ribosomal
protein S4A (YS6) (rp5) (S7A); Rps4ap [Saccharomyces
cerevisiae] >gi|133945|sp|P05753|RS4_YEAST 40S RIBOSOMAL
PROTEIN S4 (S7) (YS6) (RP5) >gi|83492|pir||S20054
ribosomal protein S4.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|172502|gb|AAA35011.1| (M64293) ribosomal
protein S7 [Saccharomyces cerevisiae]
>gi|172504|gb|AAA35012.1| (M64294) ribosomal protein S7
[Saccharomyces cerevisiae] >gi|1015892|emb|CAA89678.1|
(Z49645) ORF YJR145c [Saccharomyces cerevisiae]
>gi|2347176|gb|AAB68372.1| (U00030) Rps7ap: Ribosomal
protein S7 [Saccharomyces cerevisiae]
Length = 261
Score = 151 bits (378), Expect = 7e-36
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 5/241 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP W +++ + +A RP GPH +R S+PL+ +R+ L YA RE +
Sbjct: 3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D +P G MDV+++ T E++R++ + G+ +H I++EEA+ K
Sbjct: 63 AILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGA 183
+++ ++ K + HDG P N + TV + + +I + + F+ G
Sbjct: 123 LGKVKKVQLGKKGVPYVVTHDGRTIRYP---DPNIKVNDTVKIDLASGKITDFIKFDAGK 179
Query: 184 YVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVG-RDKPRISL 242
V+VT G+N+ R G IV ++ G+ D+V I+D F T FV+G + KP ISL
Sbjct: 180 LVYVTGGRNLGRIGTIVHKERHDGGF-DLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISL 238
Query: 243 P 243
P
Sbjct: 239 P 239
>gb|AAC32105.1| (AF051136) ribosomal protein S4 X isoform [Monodelphis domestica]
Length = 263
Score = 151 bits (377), Expect = 9e-36
Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +PVG MDV+SI +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R + A L HD + PL + ++ T+ + + +I + + F+
Sbjct: 123 LCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMND-----TIQIDLETGKITDFIKFDT 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G VT G N+ R G I +K P G DVV ++D G F T FV+G+ +KP I
Sbjct: 178 GNMCMVTGGANLGRIGVITNREKHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWI 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>sp|P41042|RS4_DROME 40S RIBOSOMAL PROTEIN S4 >gi|478316|pir||JN0871 ribosomal protein
S4 - fruit fly (Drosophila melanogaster)
>gi|440853|dbj|BAA03786.1| (D16257) ribosomal protein S4
[Drosophila melanogaster]
Length = 261
Score = 150 bits (375), Expect = 2e-35
Identities = 84/241 (34%), Positives = 137/241 (55%), Gaps = 5/241 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP +W +++ +A RP GPH +R S+PLL +R+ L YA E
Sbjct: 3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVT 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI+ + V G+VR D +P G MDV+++ +TGE +R++ + G+ ++H IS EEA K
Sbjct: 63 KIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGA 183
+++ ++ L HDG P + +V + + +I + + F+ G
Sbjct: 123 LCKVKKTQLGAKGVPFLVTHDGRTIRYP---DPLIHANDSVQVDIASGKITDYIKFDSGN 179
Query: 184 YVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISL 242
+T G+N+ R G +V ++ P G D+V I+D +G +F T F++G+ +KP ISL
Sbjct: 180 LCMITGGRNLGRVGTVVNRERHP-GSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISL 238
Query: 243 P 243
P
Sbjct: 239 P 239
>gb|AAC32106.1| (AF051137) ribosomal protein S4 Y isoform [Monodelphis domestica]
Length = 263
Score = 149 bits (372), Expect = 3e-35
Identities = 89/243 (36%), Positives = 135/243 (54%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R + L HD + PL + ++ TV + + +I + + F+
Sbjct: 123 LCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVND-----TVQINLETGKITDFIKFDT 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G VT G N+ R G I +K P G DVV ++D G F T FV+G+ +KP I
Sbjct: 178 GNLCMVTGGANLGRIGVITNREKHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWI 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>dbj|BAB11167.1| (AB010697) 40S ribosomal protein S4 [Arabidopsis thaliana]
Length = 263
Score = 147 bits (368), Expect = 1e-34
Identities = 88/246 (35%), Positives = 139/246 (55%), Gaps = 9/246 (3%)
Query: 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR 60
M +G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T R
Sbjct: 1 MQARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYR 60
Query: 61 EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
E IL + VDG+VR D +P G MDVVSIP+T E++R+L + G+ LH I +EEA
Sbjct: 61 EVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEA 120
Query: 121 NIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLP 178
K ++R+ + + LN +DG + PL + ++ T+ + + E +I+E +
Sbjct: 121 KFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPND-----TIKLDLEENKIVEFIK 175
Query: 179 FEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DK 237
F+ G V VT G+N R G +++ ++ G + + I+D G F T + +G+ K
Sbjct: 176 FDVGNVVMVTGGRNRGRVG-VIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 234
Query: 238 PRISLP 243
P +SLP
Sbjct: 235 PWVSLP 240
>emb|CAB96734.1| (AL365154) 40S ribosomal protein S4, copy 1 [Leishmania major]
>gi|8953450|emb|CAB96735.1| (AL365154) 40S ribosomal
protein S4, copy 2 [Leishmania major]
>gi|11066280|gb|AAG28535.1|AF199018_1 (AF199018) 40S
ribosomal protein S4 [Leishmania major]
Length = 273
Score = 147 bits (367), Expect = 1e-34
Identities = 86/230 (37%), Positives = 127/230 (54%), Gaps = 4/230 (1%)
Query: 7 KRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66
K+HLKRL AP W + + +A RPRPGPH +R +PLL I+R+ L YA ARE IL
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 67 NEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLR 126
+G VD R+D K+P G MDVV IP+TG+ +R++ + G+ L +SE EA IK ++
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 127 IRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVF 186
+ N G HDG H I + T++ V E++ ++++ +G V
Sbjct: 123 VVNLYTATGRVPVAVTHDG--HRIRYPDPHTSIGD-TIVYNVKEKKCVDLIKNRQGKAVI 179
Query: 187 VTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRD 236
VT G N R G IV+++ P G ++ ++D G F T FV+G+D
Sbjct: 180 VTGGANRGRIGEIVKVECHP-GAFNIAHLKDASGAEFATRAANIFVIGKD 228
>sp|P47836|RS4_CHICK 40S RIBOSOMAL PROTEIN S4 >gi|1362730|pir||A56537 ribosomal protein
S4, cytosolic - chicken >gi|402296|gb|AAB59946.1|
(L24368) ribosomal protein S4 [Gallus gallus]
Length = 263
Score = 146 bits (365), Expect = 2e-34
Identities = 87/247 (35%), Positives = 136/247 (54%), Gaps = 17/247 (6%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + T+ + + +I + +
Sbjct: 123 LCKVR--KIFVGTK-------GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 173
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G VT G N+ R G I ++ P G DVV ++D G F T FV+G+ +
Sbjct: 174 KFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGN 232
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 233 KPWISLP 239
>pir||T48480 ribosomal protein S4 - Arabidopsis thaliana
>gi|7546687|emb|CAB87265.1| (AL163652) ribosomal protein
S4 [Arabidopsis thaliana]
Length = 262
Score = 146 bits (365), Expect = 2e-34
Identities = 87/243 (35%), Positives = 138/243 (55%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D +P G MDVVSIP+T E++R+L + G+ LH I +EEA K
Sbjct: 63 SILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R+ + + LN +DG + PL + ++ T+ + + E +I+E + F+
Sbjct: 123 LCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPND-----TIKLDLEENKIVEFIKFDV 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V VT G+N R G +++ ++ G + + I+D G F T + +G+ KP +
Sbjct: 178 GNVVMVTGGRNRGRVG-VIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>sp|P87158|RS4_SCHPO 40S RIBOSOMAL PROTEIN S4 >gi|7489989|pir||T39831 40s ribosomal
protein s4 - fission yeast (Schizosaccharomyces pombe)
>gi|3150141|emb|CAA19128.1| (AL023594) 40s ribosomal
protein S4A/S4.1 [Schizosaccharomyces pombe]
Length = 262
Score = 145 bits (361), Expect = 7e-34
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 13/245 (5%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ + +A +P PGPH R +PL+ +R+ L YA RE +
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D FP G MDV+S+ +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAK--IQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPF 179
++ KR+ GAK L HDG + PL + ++ T+ + + +I + F
Sbjct: 123 LCKV--KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVND-----TIKLNLETNKIESFIKF 175
Query: 180 EKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKP 238
+ A V VT G+N+ R G IV ++ +G +++ ++D F T FV+G K
Sbjct: 176 DTSAQVMVTGGRNMGRVGTIVH-REHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKS 234
Query: 239 RISLP 243
ISLP
Sbjct: 235 WISLP 239
>pir||T43429 ribosomal protein S4 - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|3724352|dbj|BAA33778.1| (AB018354)
ribosomal protein S4 [Schizosaccharomyces pombe]
Length = 260
Score = 145 bits (361), Expect = 7e-34
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 13/245 (5%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ + +A +P PGPH R +PL+ +R+ L YA RE +
Sbjct: 1 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 60
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D FP G MDV+S+ +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 61 AILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYK 120
Query: 124 PLRIRNKRMVKGAK--IQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPF 179
++ KR+ GAK L HDG + PL + ++ T+ + + +I + F
Sbjct: 121 LCKV--KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVND-----TIKLNLETNKIESFIKF 173
Query: 180 EKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKP 238
+ A V VT G+N+ R G IV ++ +G +++ ++D F T FV+G K
Sbjct: 174 DTSAQVMVTGGRNMGRVGTIVH-REHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKS 232
Query: 239 RISLP 243
ISLP
Sbjct: 233 WISLP 237
>pir||T39917 40s ribosomal protein s4-2 - fission yeast (Schizosaccharomyces
pombe) >gi|6018736|emb|CAB57920.1| (AL121794) 40s
ribosomal protein s4-2 [Schizosaccharomyces pombe]
Length = 262
Score = 145 bits (361), Expect = 7e-34
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 13/245 (5%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ + +A +P PGPH R +PL+ +R+ L YA RE +
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D FP G MDV+S+ +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 AILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAK--IQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPF 179
++ KR+ GAK L HDG + PL + ++ T+ + + +I + F
Sbjct: 123 LCKV--KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVND-----TIKLNLETNKIESFIKF 175
Query: 180 EKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKP 238
+ A V VT G+N+ R G IV ++ +G +++ ++D F T FV+G K
Sbjct: 176 DTSAQVMVTGGRNMGRVGTIVH-REHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKS 234
Query: 239 RISLP 243
ISLP
Sbjct: 235 WISLP 239
>emb|CAB93014.1| (AL357232) 40s ribosomal protein s4 [Schizosaccharomyces pombe]
Length = 262
Score = 145 bits (361), Expect = 7e-34
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 13/245 (5%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ + +A +P PGPH R +PL+ +R+ L YA RE +
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D FP G MDV+S+ +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAK--IQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPF 179
++ KR+ GAK L HDG + PL + ++ T+ + + +I + F
Sbjct: 123 LCKV--KRVQLGAKGVPFLVTHDGRTIRYPDPLIKVND-----TIKLNLETNKIESFIKF 175
Query: 180 EKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKP 238
+ A V VT G+N+ R G IV ++ +G +++ ++D F T FV+G K
Sbjct: 176 DTSAQVMVTGGRNMGRVGTIVH-REHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKS 234
Query: 239 RISLP 243
ISLP
Sbjct: 235 WISLP 239
>prf||1617101C ribosomal protein S4 [Rattus norvegicus]
Length = 263
Score = 144 bits (360), Expect = 9e-34
Identities = 86/247 (34%), Positives = 136/247 (54%), Gaps = 17/247 (6%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGE++R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + T+ + + +I + +
Sbjct: 123 LCKVR--KIFVGTK-------GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 173
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G VT G N+ R G I ++ P G DVV ++D G F T FV+G+ +
Sbjct: 174 KFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVHVKDRNGNSFATRLSNIFVIGKGN 232
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 233 KPWISLP 239
>sp|P47961|RS4_CRIGR 40S RIBOSOMAL PROTEIN S4 >gi|453574|dbj|BAA05485.1| (D26473)
Ribosomal Protein [Cricetulus griseus]
Length = 263
Score = 144 bits (360), Expect = 9e-34
Identities = 86/247 (34%), Positives = 136/247 (54%), Gaps = 17/247 (6%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGE++R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + T+ + + +I + +
Sbjct: 123 LCKVR--KIFVGTK-------GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 173
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G VT G N+ R G I ++ P G DVV ++D G F T FV+G+ +
Sbjct: 174 KFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGN 232
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 233 KPWISLP 239
>gi|4506725 ribosomal protein S4, X-linked [Homo sapiens]
>gi|6677805|ref|NP_033120.1| ribosomal protein S4,
X-linked [Mus musculus] >gi|11419826|ref|XP_010131.1|
ribosomal protein S4, X-linked [Homo sapiens]
>gi|1350997|sp|P12750|RS4_HUMAN 40S RIBOSOMAL PROTEIN
S4, X ISOFORM (SINGLE COPY ABUNDANT MRNA PROTEIN)
(SCR10) >gi|70870|pir||R3RT4 ribosomal protein S4,
cytosolic [validated] - rat >gi|70871|pir||R3HU4X
ribosomal protein S4.X - human >gi|1083572|pir||A55276
ribosomal protein S4 - western wild mouse
>gi|2148029|pir||I48169 ribosomal protein S4 - hamster
(Mesocricetus sp.) >gi|57135|emb|CAA32427.1| (X14210)
ribosomal protein S4 (AA 1 - 263) [Rattus rattus]
>gi|200864|gb|AAA40075.1| (M73436) ribosomal protein S4
[Mus musculus] >gi|220321|dbj|BAA01858.1| (D11087)
ribosomal protein S4 [Mesocricetus sp.]
>gi|337510|gb|AAA63255.1| (M58458) ribosomal protein S4X
isoform [Homo sapiens] >gi|2791861|gb|AAB96968.1|
(AF041428) ribosomal protein s4 X isoform [Homo sapiens]
>gi|4115718|dbj|BAA36501.1| (AB015610) ribosomal protein
S4X [Chlorocebus aethiops] >gi|6519820|dbj|BAA87932.1|
(AB024285) ribosomal protein S4X (RPS4X) [Macaca
fuscata]
Length = 263
Score = 144 bits (359), Expect = 1e-33
Identities = 86/247 (34%), Positives = 136/247 (54%), Gaps = 17/247 (6%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGE++R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + T+ + + +I + +
Sbjct: 123 LCKVR--KIFVGTK-------GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 173
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G VT G N+ R G I ++ P G DVV ++D G F T FV+G+ +
Sbjct: 174 KFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGN 232
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 233 KPWISLP 239
>pir||PC4159 ribosomal protein S4 - cat (fragment) >gi|950115|gb|AAB01670.1|
(U22232) ribosomal protein S4 [Felis catus]
Length = 262
Score = 144 bits (359), Expect = 1e-33
Identities = 86/247 (34%), Positives = 136/247 (54%), Gaps = 17/247 (6%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 2 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 61
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGE++R++ + G+ +H I+ EEA K
Sbjct: 62 KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYK 121
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + T+ + + +I + +
Sbjct: 122 LCKVR--KIFVGTK-------GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 172
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G VT G N+ R G I ++ P G DVV ++D G F T FV+G+ +
Sbjct: 173 KFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGN 231
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 232 KPWISLP 238
>sp|P22510|RS4E_HALMA 30S RIBOSOMAL PROTEIN S4E (HS3) >gi|279639|pir||R3HS4 ribosomal
protein S4.eR [similarity] - Haloarcula marismortui
>gi|43616|emb|CAA39020.1| (X55311) ribosomal protein HS3
[Haloarcula marismortui]
Length = 234
Score = 144 bits (359), Expect = 1e-33
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 3/225 (1%)
Query: 9 HLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNE 68
H KRL+ P SW +ERK + V+ GPH + +PLL ++RD LGYA +EAR LNE
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 69 GKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIR 128
L++G+ D + PVG+ D+++ E E+YRV P G+L L I + A K +I
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 129 NKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVT 188
K V G +QL HDG ++ + Y ++++ + E++ +E+GA V
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIV--EDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAV 180
Query: 189 QGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVV 233
G + G + EI+ P + V + +EGE F+T++EY V+
Sbjct: 181 DGAHAGEVGEVEEIQVTPGSAQNNVIVSQDEGEGFETVEEYVVVI 225
>gi|4506727 ribosomal protein S4, Y-linked [Homo sapiens]
>gi|11418295|ref|XP_010467.1| ribosomal protein S4,
Y-linked [Homo sapiens] >gi|133948|sp|P22090|RS4Y_HUMAN
40S RIBOSOMAL PROTEIN S4, Y ISOFORM (PRO2646)
>gi|70872|pir||R3HU4Y ribosomal protein S4.Y - human
>gi|337512|gb|AAA63256.1| (M58459) ribosomal protein S4Y
isoform [Homo sapiens] >gi|2791859|gb|AAB96967.1|
(AF041427) ribosomal protein s4 Y isoform [Homo sapiens]
>gi|7959921|gb|AAF71131.1|AF116721_111 (AF116711)
PRO2646 [Homo sapiens]
Length = 263
Score = 143 bits (358), Expect = 1e-33
Identities = 89/242 (36%), Positives = 132/242 (53%), Gaps = 7/242 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYK 122
Query: 124 PLRIRNKRM-VKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKG 182
++R + VKG L HD P + TV + + +I+ + F+ G
Sbjct: 123 LCKVRKITVGVKGIP-HLVTHDARTIRYP---DPVIKVNDTVQIDLGTGKIINFIKFDTG 178
Query: 183 AYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRIS 241
V G N+ R G I ++ P G DVV ++D G F T FV+G +KP IS
Sbjct: 179 NLCMVIGGANLGRVGVITNRERHP-GSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 237
Query: 242 LP 243
LP
Sbjct: 238 LP 239
>sp|P46300|RS4_SOLTU 40S RIBOSOMAL PROTEIN S4 >gi|1076674|pir||S47642 ribosomal protein
S4, cytosolic - potato >gi|457803|emb|CAA54095.1|
(X76651) ribosomal protein S4 [Solanum tuberosum]
Length = 264
Score = 143 bits (357), Expect = 2e-33
Identities = 84/243 (34%), Positives = 140/243 (57%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + + +VDG+VR D +P G MDVVSIP+T E++R+L + G+ LH + +EE+ K
Sbjct: 63 SILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R+ + + LN +DG + PL + ++ T+ + + +I++ + F+
Sbjct: 123 LCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKAND-----TIKLDLESNKIVDFIKFDV 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V VT G+N R G +++ ++ G + + I+D +G F T F +G+ KP +
Sbjct: 178 GNVVMVTGGRNRGRVG-VIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWV 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>dbj|BAA87933.1| (AB024286) ribosomal protein S4Y (RPS4Y) [Macaca fuscata]
Length = 263
Score = 143 bits (356), Expect = 3e-33
Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 17/247 (6%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGEH+R++ + G+ +H I+ EEA K
Sbjct: 63 KICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + TV + + +I +
Sbjct: 123 LCKVR--KITVGTK-------GIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFI 173
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G V G N+ R G I ++ P G DVV ++D G F T FV+G +
Sbjct: 174 KFDTGNVCMVIGGANLGRVGVITNRERHP-GSFDVVHVKDASGNSFATRISNIFVIGNGN 232
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 233 KPWISLP 239
>sp|P47837|RS4_CANAL 40S RIBOSOMAL PROTEIN S4 (S7) >gi|1051260|gb|AAC49871.1| (U37009)
ribosomal protein S7 [Candida albicans]
Length = 262
Score = 142 bits (354), Expect = 4e-33
Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 10/244 (4%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP+ W + + + +A RP GPH +R S+PL +R+ L YA RE +
Sbjct: 3 RGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
I+ + V G+VR D +P G MDV+++ T EH+R+ + GK +H IS EEA K
Sbjct: 63 AIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
+++ ++ K + HDG + PL ++ TV + + +I + F+
Sbjct: 123 LGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRAND-----TVKIDLATGKIXSFIKFDT 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRD--KPR 239
G V VT G+N+ R G IV +K G+ D+V I+D F T FV+G + KP
Sbjct: 178 GRLVMVTGGRNLGRVGVIVHREKLEGGF-DLVHIKDALENTFVTRLSNVFVIGTEAGKPW 236
Query: 240 ISLP 243
+SLP
Sbjct: 237 VSLP 240
>sp|O59950|RS4_YARLI 40S RIBOSOMAL PROTEIN S4 (S7) >gi|2997729|gb|AAC08586.1| (AF054511)
ribosomal protein S7 [Yarrowia lipolytica]
Length = 260
Score = 141 bits (352), Expect = 8e-33
Identities = 87/243 (35%), Positives = 136/243 (55%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP+ W +++ + +A R GPH +R S+PL+ +R+ L YA RE
Sbjct: 3 RGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVN 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D FP G MDV+ + +TGE++R++ + G+ +H I++EEA K
Sbjct: 63 AILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
+++ ++ K L HDG + PL + ++ TV + + +I + FE
Sbjct: 123 LGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVND-----TVKIDLATGKITSFVKFEN 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V T G+N+ R G I ++ G+ D+V I+D F T FV+G +K I
Sbjct: 178 GNIVMTTGGRNMGRVGTITHRERHEGGF-DIVHIKDALDNQFVTRLTNVFVIGEGNKSLI 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>sp|P51405|RS4_DICDI 40S RIBOSOMAL PROTEIN S4 >gi|3647233|gb|AAD04813.1| (AF039748) 40S
ribosomal protein S4 [Dictyostelium discoideum]
Length = 267
Score = 141 bits (352), Expect = 8e-33
Identities = 84/244 (34%), Positives = 128/244 (52%), Gaps = 11/244 (4%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKRLAAP W +++ + KWA RP GPH +R +PL+ ++R+ L YA T +E
Sbjct: 3 RGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVT 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + VDG+VR D +P G MDV+SI +T E++R+L + G+ L I+ EEA K
Sbjct: 63 LILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIP---LSEKDNYFTSYTVLMKVPEREILEVLPFE 180
R+ ++ DG P +S D T+ + + +I +PFE
Sbjct: 123 LARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHD------TIKIDIESGKITAFIPFE 176
Query: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPR 239
+ G N+ R G + +K P G D+V + D G F T F++G+ +
Sbjct: 177 VNNLCMIVGGHNLGRVGAVTHREKHP-GSFDIVHVTDTAGHQFATRLSNVFIIGKASQTF 235
Query: 240 ISLP 243
+SLP
Sbjct: 236 VSLP 239
>sp|P46299|RS4_GOSHI 40S RIBOSOMAL PROTEIN S4 >gi|629496|pir||S45026 ribosomal protein
S4, cytosolic - upland cotton >gi|488739|emb|CAA55882.1|
(X79300) ribosomal protein, small subunit 4e (RS4e)
[Gossypium hirsutum]
Length = 262
Score = 140 bits (350), Expect = 1e-32
Identities = 83/243 (34%), Positives = 136/243 (55%), Gaps = 9/243 (3%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + +VDG+VR D +P G MDVVSIP+T E +R+L + G+ LH I+ +E K
Sbjct: 63 AILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R+ + + LN +DG + PL + ++ T+ + + +I++ + F+
Sbjct: 123 LCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKAND-----TIKLDLESNKIVDFIKFDV 177
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V VT G+N R G +++ ++ G + + ++D G F T F +G+ KP +
Sbjct: 178 GNVVMVTGGRNRGRVG-VIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWV 236
Query: 241 SLP 243
SLP
Sbjct: 237 SLP 239
>prf||2110340A ribosomal protein S7 [Tetrahymena thermophila]
Length = 259
Score = 138 bits (343), Expect = 9e-32
Identities = 81/236 (34%), Positives = 123/236 (51%), Gaps = 6/236 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLKR+ AP SW + + WA RP GPH +R S+PL ++++ L YA R+
Sbjct: 2 RGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVT 61
Query: 64 KILN--EGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAN 121
ILN EG VD +VR+D +P G+MDVV I +T + +R+L + G+ +L +S+EEA
Sbjct: 62 LILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAK 121
Query: 122 IKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
K L++ K + + HD P E T+ + +I E
Sbjct: 122 YKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPE---IKIGDTLKYDLVNNKIENFAHLES 178
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDK 237
G ++ QG N+ R G I I+K G D+ ++D +G F T FV+G+ K
Sbjct: 179 GNVCYIQQGNNIGRVGIIQHIEKH-QGSFDICHVKDAKGNAFATRLGNIFVLGQGK 233
>pir||A53254 ribosomal protein S4 - human
Length = 262
Score = 137 bits (342), Expect = 1e-31
Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 18/247 (7%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HL R+AAP W +++ +A RP GPH +R +PL+ +R+ L YA T E +
Sbjct: 3 RGPKKHL-RVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK 61
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
KI + +DG+VR D +P G MDV+SI +TGE++R++ + G+ +H I+ EEA K
Sbjct: 62 KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYK 121
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF------TSYTVLMKVPEREILEVL 177
++R ++ G K G HL+ + + + T+ + + +I + +
Sbjct: 122 LCKVR--KIFVGTK-------GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 172
Query: 178 PFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-D 236
F+ G VT G N+ R G I ++ P G DVV ++D G F T FV+G+ +
Sbjct: 173 KFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVHVKDANGNSFATRLSNIFVIGKGN 231
Query: 237 KPRISLP 243
KP ISLP
Sbjct: 232 KPWISLP 238
>sp|P49204|RS4_ARATH 40S RIBOSOMAL PROTEIN S4
Length = 263
Score = 136 bits (340), Expect = 2e-31
Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 10/244 (4%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSI-PETGEHYRVLPNRIGKLILHPISEEEANI 122
IL + VDG+VR D +P G MDVVSI P+T E++R+L + G+ LH I +EEA
Sbjct: 63 SILMQRHIQVDGKVRTDKTYPAGFMDVVSIVPKTNENFRLLYDTKGRFRLHSIKDEEAKF 122
Query: 123 KPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFE 180
K + LN +DG + PL + ++ T+ + + E +I+E + F+
Sbjct: 123 KXXXXXXXXXXQKGIPYLNTYDGRTIRYPDPLIKPND-----TIKLDLEENKIVEFIKFD 177
Query: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPR 239
G V VT G+N R G +++ ++ G + + I+D G F T + +G+ KP
Sbjct: 178 VGNVVMVTGGRNRGRVG-VIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPW 236
Query: 240 ISLP 243
+SLP
Sbjct: 237 VSLP 240
>gb|AAG19948.1| (AE005077) 30S ribosomal protein S4E; Rps4e [Halobacterium sp.
NRC-1]
Length = 233
Score = 136 bits (338), Expect = 3e-31
Identities = 76/225 (33%), Positives = 120/225 (52%), Gaps = 5/225 (2%)
Query: 9 HLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNE 68
H KRL+ P SW +ERK + + GPH + +PL+ ++RD L Y EA+ +N
Sbjct: 4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINT 62
Query: 69 GKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIR 128
LV+G D P+G+ D+++ P+ E+YRV P+ G+L L I + A K ++
Sbjct: 63 DGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVT 122
Query: 129 NKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVT 188
+K V G + QLNFHDG+N + ++D Y +V++ EI+ +E+GA V
Sbjct: 123 DKTTVSGGRTQLNFHDGSNLAL---DEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAV 179
Query: 189 QGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVV 233
G++ G I EI P + V ++DE G F+T+ EY V+
Sbjct: 180 AGQHAGDIGEIAEINVQPGSASNTVRVDDENGG-FETIAEYVVVI 223
>emb|CAB40397.1| (AJ010592) 40S ribosomal protein S4 [Guillardia theta]
Length = 257
Score = 133 bits (331), Expect = 2e-30
Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 7/242 (2%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+H KRL AP W + + WA R GPH + SIPL+ ++R+ L Y+ RE+
Sbjct: 3 RGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESL 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + + VDG+VR D FP G+MDV+SI T E+YRVL + +G LH I+ +E+ K
Sbjct: 63 NILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIP-LSEKDNYFTSYTVLMKVPEREILEVLPFEKG 182
++ + + HDG P L K N ++++ + ++++ + F G
Sbjct: 123 LCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSN----DSIVLDLLNNKVIDFIKFSIG 178
Query: 183 AYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRIS 241
+ V +G N+ R G + G +V ++D G F T + FV+G+ K IS
Sbjct: 179 SLCVVIKGSNIGRIGVFINTIG-GQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFIS 237
Query: 242 LP 243
LP
Sbjct: 238 LP 239
>sp|Q56230|RS4E_THEAC 30S RIBOSOMAL PROTEIN S4E >gi|7484229|pir||T37467 ribosomal protein
s4e - Thermoplasma acidophilum
>gi|1373335|gb|AAB02244.1| (U57643) ribosomal protein
s4e [Thermoplasma acidophilum]
>gi|10640605|emb|CAC12383.1| (AL445067) 30S RIBOSOMAL
PROTEIN S4E [Thermoplasma acidophilum]
Length = 237
Score = 128 bits (318), Expect = 7e-29
Identities = 79/227 (34%), Positives = 119/227 (51%), Gaps = 9/227 (3%)
Query: 11 KRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGK 70
KRL I RK Y W P PG H S+ LL I+RDYL + REA +IL G
Sbjct: 8 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 67
Query: 71 FLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNK 130
VDG+ ++ KF VG MDV+ I GE YRV+ N G L+L ++E A++K L++R+K
Sbjct: 68 VKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSK 125
Query: 131 RMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQG 190
+ G +IQL HDG + K + VP+ +I E++ + G ++T G
Sbjct: 126 VIAPGNRIQLGTHDGRTFITDDKSKK---VGDVWAVSVPDMKISEIIKMQPGNKAYITAG 182
Query: 191 KNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDK 237
+V + G I +I+ ++V + E F T+K++ F++G K
Sbjct: 183 SHVNQTGTISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGSSK 225
>gb|AAC24585.1| (AF071891) 40S ribosomal protein S4 [Prunus armeniaca]
Length = 261
Score = 127 bits (316), Expect = 1e-28
Identities = 79/243 (32%), Positives = 134/243 (54%), Gaps = 13/243 (5%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVV 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + LVDG++ F + + DVVSIP+T E++R+L + G+ LH I +EE+ K
Sbjct: 63 SILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFK 118
Query: 124 PLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEK 181
++R+ + + +N +DG + PL + ++ T+ + + +I + + F+
Sbjct: 119 LCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITDFIKFDV 173
Query: 182 GAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRI 240
G V VT G+N R G +++ ++ G + + ++D G F T F +G+ KP +
Sbjct: 174 GNVVMVTGGRNRGRVG-VIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWV 232
Query: 241 SLP 243
SLP
Sbjct: 233 SLP 235
>gb|AAB86513.2| (AC002329) putative ribosomal protein S4 [Arabidopsis thaliana]
Length = 243
Score = 125 bits (310), Expect = 6e-28
Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 9/219 (4%)
Query: 28 WAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGI 87
+A +P GPH R +PL+ I+R+ L YA T RE IL + VDG+VR D +P G
Sbjct: 9 FAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGF 68
Query: 88 MDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG-- 145
MDVVSIP+T E++R+L + G+ LH I +EEA K ++R+ + + LN +DG
Sbjct: 69 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 128
Query: 146 TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKF 205
+ PL + ++ T+ + + E +I+E + F+ G V VT G+N R G +++ ++
Sbjct: 129 IRYPDPLIKPND-----TIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG-VIKNREK 182
Query: 206 PMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243
G + + I+D G F T + +G+ KP +SLP
Sbjct: 183 HKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 221
>dbj|BAB10257.1| (AB025632) ribosomal protein S4 [Arabidopsis thaliana]
Length = 244
Score = 122 bits (304), Expect = 3e-27
Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 9/219 (4%)
Query: 28 WAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGI 87
+A +P GPH R +PL+ I+R+ L YA T RE IL + VDG+VR D +P G
Sbjct: 9 FAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGF 68
Query: 88 MDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG-- 145
MDVVSIP+T E++R+L + G+ LH I +EEA K ++R+ + + LN +DG
Sbjct: 69 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 128
Query: 146 TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKF 205
+ PL + ++ T+ + + +I+E + F+ G V VT G+N R G +++ ++
Sbjct: 129 IRYPDPLIKPND-----TIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVG-VIKNREK 182
Query: 206 PMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243
G + + I+D G F T + +G+ KP +SLP
Sbjct: 183 HKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 221
>sp|P49398|RS4_ORYSA 40S RIBOSOMAL PROTEIN S4 (SCAR PROTEIN SS620)
>gi|7440146|pir||T04308 probable ribosomal protein S4 -
rice >gi|2463335|emb|CAA75242.1| (Y15009) ribosomal
protein S4 [Oryza sativa]
Length = 268
Score = 115 bits (286), Expect = 4e-25
Identities = 79/250 (31%), Positives = 126/250 (49%), Gaps = 20/250 (8%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVI 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
IL + LVDG+VR D +P G MDV+SIP+TGE+YR+L + G+ L + +E+A K
Sbjct: 63 SILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPERE------ILEVL 177
++R+ + + LN +++P D Y + +R + L
Sbjct: 123 LCKVRSVQFGQKGIPYLN-----TYVVP---TDTYMATIATRPTSGKRHNQDRSGDQQEL 174
Query: 178 PFEKGAYVFVTQGKNVARKGRIV---EIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVG 234
+G + + G R+ V + + G + + +ED G F T F +G
Sbjct: 175 RLHQGLMLAMCHGD--WRRNTAVWCDQQQGEAKGSFETIHVEDALGHQFATRLGNVFTIG 232
Query: 235 R-DKPRISLP 243
+ +KP +SLP
Sbjct: 233 KGNKPWVSLP 242
>gb|AAA36597.1| (M22146) scar protein [Homo sapiens]
Length = 244
Score = 115 bits (286), Expect = 4e-25
Identities = 75/220 (34%), Positives = 118/220 (53%), Gaps = 18/220 (8%)
Query: 32 PRP-GPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDV 90
PRP GPH +R +PL+ +R+ L YA T E +KI + +DG+VR D +P G MDV
Sbjct: 11 PRPSGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDV 70
Query: 91 VSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLI 150
+SI +TGE++R++ + G+ +H I+ EEA K ++R ++ G K G HL+
Sbjct: 71 ISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVR--KIFVGTK-------GIPHLV 121
Query: 151 PLSEKDNYF------TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKK 204
+ + + T+ + + +I + + F+ G VT G N+ R G I ++
Sbjct: 122 THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER 181
Query: 205 FPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243
P G DVV ++D G F T FV+G+ +KP ISLP
Sbjct: 182 HP-GSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLP 220
>sp|P55832|RS4_HORSE 40S RIBOSOMAL PROTEIN S4 >gi|4432936|dbj|BAA21075.1| (D50104)
ribosomal protein S4 [Macaca fuscata]
>gi|4432938|dbj|BAA21077.1| (D50106) ribosomal protein
S4 [Felis catus] >gi|4432940|dbj|BAA21079.1| (D50108)
ribosomal protein S4 [Canis familiaris]
>gi|4432941|dbj|BAA21080.1| (D50109) ribosomal protein
S4 [Equus caballus] >gi|4432942|dbj|BAA21081.1| (D50110)
ribosomal protein S4 [Sus scrofa]
Length = 194
Score = 101 bits (249), Expect = 9e-21
Identities = 63/196 (32%), Positives = 104/196 (52%), Gaps = 16/196 (8%)
Query: 28 WAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGI 87
+A RP GPH +R +PL+ +R+ L YA T E +KI + +DG+VR D +P G
Sbjct: 8 FAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGF 67
Query: 88 MDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTN 147
MDV+SI +TGE++R++ + G+ +H I+ EEA K ++R ++ G K G
Sbjct: 68 MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVR--KIFVGTK-------GIP 118
Query: 148 HLIPLSEKDNYF------TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVE 201
HL+ + + + T+ + + +I + + F+ G VT G N+ R G I
Sbjct: 119 HLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITN 178
Query: 202 IKKFPMGWPDVVTIED 217
++ P G DVV ++D
Sbjct: 179 RERHP-GSFDVVHVKD 193
>sp|Q40941|RS4_CHLS6 40S RIBOSOMAL PROTEIN S4 >gi|1401207|gb|AAD05368.1| (U58510) small
subunit ribosomal protein 4 [Chlorarachnion CCMP621]
Length = 242
Score = 99.5 bits (244), Expect = 3e-20
Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 10/240 (4%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
KG K+H KR+++ T ++K + + GPH+ S+ LL I++ + A +EA+
Sbjct: 3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQ 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIK 123
K++ G V+G+ +KFP+ +MD +S P +HYRVL ++ GKL ++ I++ E ++K
Sbjct: 63 KVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLK 122
Query: 124 PLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYF---TSYTVLMKVPEREILEVLPFE 180
++ K + +K ++ D L K NY ++L+K EI+ L FE
Sbjct: 123 ICKV-IKIINASSKNKIIITDDLREL-----KINYAKIKVEDSLLIKTINDEIVYALKFE 176
Query: 181 KGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGRDKPRI 240
G+ +T+GK++ I EI+K ++ +E +G+ V+G K I
Sbjct: 177 VGSLCLITRGKHLGTIAVIKEIRK-TKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSI 235
>sp|P79103|RS4_BOVIN 40S RIBOSOMAL PROTEIN S4 >gi|4432939|dbj|BAA21078.1| (D50107)
ribosomal protein S4 [Bos taurus]
Length = 194
Score = 99.1 bits (243), Expect = 5e-20
Identities = 62/196 (31%), Positives = 103/196 (51%), Gaps = 16/196 (8%)
Query: 28 WAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGI 87
+A RP GPH +R +PL+ +R+ L YA T E +KI + +DG+VR D +P G
Sbjct: 8 FAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGF 67
Query: 88 MDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTN 147
MDV+SI + GE++R++ + G+ +H I+ EEA K ++R ++ G K G
Sbjct: 68 MDVISIDKIGENFRLIYDTKGRFAVHRITPEEAKYKLCKVR--KIFVGTK-------GIP 118
Query: 148 HLIPLSEKDNYF------TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVE 201
HL+ + + + T+ + + +I + + F+ G VT G N+ R G I
Sbjct: 119 HLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITN 178
Query: 202 IKKFPMGWPDVVTIED 217
++ P G DVV ++D
Sbjct: 179 RERHP-GSFDVVHVKD 193
>emb|CAC17636.1| (AL137162) dJ843L14.2 (novel protein similar to X-linked ribosomal
protein 4 (RPS4X)) [Homo sapiens]
Length = 119
Score = 96.3 bits (236), Expect = 3e-19
Identities = 44/117 (37%), Positives = 72/117 (60%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+HLK++AAP W + + +A P PHN+R +PL+ +R+ L Y T E +
Sbjct: 3 RGPKKHLKQVAAPKHWMLNKLTGVFAPHPSTSPHNLRECLPLIIFLRNRLKYVLTGNEVK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEA 120
KI + ++G+VR D + G MDV SI ++GE++R++ + G+ +H I+ EEA
Sbjct: 63 KICMQRFIKINGKVRTDITYSAGFMDVNSIDKSGENFRLIYDTKGRFAVHRITPEEA 119
>pir||S62681 ribosomal protein YS7 homolog - Emericella nidulans
Length = 116
Score = 90.9 bits (222), Expect = 1e-17
Identities = 39/98 (39%), Positives = 64/98 (64%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+H KRL+A + W +++ + +A + PG H +R +PL+ +R+ L YA RE +
Sbjct: 3 RGPKKHQKRLSAASHWLLDKMSGTYAPKASPGAHKLRDCLPLIVFIRNRLKYALNGRETK 62
Query: 64 KILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYR 101
I+ + VDG+VR D +P G MDV++I +TGE++R
Sbjct: 63 AIMMQRLIQVDGKVRTDPTYPAGFMDVITIEKTGENFR 100
>sp|P79183|RS4Y_MACFU 40S RIBOSOMAL PROTEIN S4, Y ISOFORM >gi|4432937|dbj|BAA21076.1|
(D50105) Y-chromosome linked ribosomal protein S4
[Macaca fuscata]
Length = 165
Score = 83.5 bits (203), Expect = 2e-15
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 50 RDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGK 109
R+ L YA T E +KI + +DG+VR D +P G MDV+SI +TGEH+R++ + G+
Sbjct: 1 RNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGR 60
Query: 110 LILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMK 167
+H I+ EEA K ++R M L HD + PL + ++ TV +
Sbjct: 61 FAVHRITVEEAKYKLCKVRKITMGMKGIPHLVTHDARTIRYPDPLIKVND-----TVQID 115
Query: 168 VPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIED 217
+ +I+ + FE G V G N+ R G I ++ P G DVV ++D
Sbjct: 116 LGTGKIINFIKFETGNVCMVIGGANLGRVGVITNRERHP-GSFDVVHVKD 164
>gb|AAB63866.1| (U97374) ribosomal protein S4 homolog [Schizosaccharomyces pombe]
Length = 81
Score = 74.9 bits (181), Expect = 8e-13
Identities = 33/77 (42%), Positives = 49/77 (62%)
Query: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREAR 63
+GPK+H KR+AAP W +++ + +A +P PGPH R +PL+ +R+ L YA RE +
Sbjct: 3 RGPKKHFKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 64 KILNEGKFLVDGRVRKD 80
IL + VDG+VR D
Sbjct: 63 AILMQRLIKVDGKVRTD 79
>pir||T04113 probable 40S ribosomal protein S4 - rice (fragment)
>gi|457682|dbj|BAA04961.1| (D25237) possible scar
protein coding sequence [Oryza sativa]
Length = 90
Score = 70.6 bits (170), Expect = 2e-11
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 55 YAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHP 114
YA T RE IL + LVDG+VR D +P G MDV+SIP+TGE+YR+L + G+ L
Sbjct: 2 YALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQS 61
Query: 115 ISEEEANIKPLRIRN 129
+ +E+A K ++R+
Sbjct: 62 VKDEDAKFKLCKVRS 76
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97086836
Number of Sequences: 2977
Number of extensions: 4171854
Number of successful extensions: 8845
Number of sequences better than 1.0e-10: 58
Number of HSP's better than 0.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8708
Number of HSP's gapped (non-prelim): 61
length of query: 243
length of database: 189,106,746
effective HSP length: 52
effective length of query: 191
effective length of database: 157,985,422
effective search space: 30175215602
effective search space used: 30175215602
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)