BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2398 (PAB2398) DE:Lysine Arginine Ornithine TRANSPORT SYSTEM
KINASE
         (324 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75215 lysine arginine ornithine transport system kinase PA...   636  0.0
sp|O58012|Y274_PYRHO HYPOTHETICAL PROTEIN PH0274 >gi|7518560|pir...   534  e-151
emb|CAB70630.1| (AL137242) putative transport system kinase [Str...   305  6e-82
gb|AAG19167.1| (AE005014) Vng0674c [Halobacterium sp. NRC-1]          297  1e-79
gi|11498887 conserved hypothetical protein [Archaeoglobus fulgid...   293  2e-78
pir||G72549 hypothetical protein APE1683 - Aeropyrum pernix (str...   266  3e-70
pir||H75358 LAO/AO transport system kinase - Deinococcus radiodu...   245  4e-64
emb|CAC11606.1| (AL445064) conserved hypothetical protein [Therm...   240  2e-62
gb|AAK42429.1| Conserved hypothetical protein [Sulfolobus solfat...   219  5e-56
sp|P71777|YE96_MYCTU HYPOTHETICAL 36.3 KDA PROTEIN RV1496 >gi|74...   217  1e-55
sp|P37895|YPLE_CAUCR HYPOTHETICAL 34.6 KD PROTEIN IN PLEC 3'REGI...   193  2e-48
pir||B75441 conserved hypothetical protein - Deinococcus radiodu...   185  6e-46
sp|P27254|ARGK_ECOLI LAO/AO TRANSPORT SYSTEM KINASE >gi|7466551|...   185  8e-46
dbj|BAB06673.1| (AP001517) unknown conserved protein in others [...   176  4e-43
pir||S22100 hypothetical protein 2 - Escherichia coli >gi|42946|...   171  1e-41
gb|AAF35933.1|AC005929_5 (AC005929) L6910.11 [Leishmania major]       149  5e-35
sp|Q22111|YC5D_CAEEL HYPOTHETICAL 33.1 KD PROTEIN T02G5.13 IN CH...   143  2e-33
dbj|BAB07515.1| (AP001520) unknown [Bacillus halodurans]              136  3e-31
gb|AAA03042.1| (L10064) Unknown [Streptomyces cinnamonensis]           78  2e-13
sp|Q05072|YMU3_STRCM HYPOTHETICAL PROTEIN IN MUTB 3'REGION (ORF-...    75  1e-12

>pir||F75215 lysine arginine ornithine transport system kinase PAB2398 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5457682|emb|CAB49173.1| (AJ248283) Lysine Arginine
           Ornithine TRANSPORT SYSTEM KINASE [Pyrococcus abyssi]
           Length = 324
           
 Score =  636 bits (1622), Expect = 0.0
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 1   MIDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKST 60
           MIDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKST
Sbjct: 1   MIDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKST 60

Query: 61  LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120
           LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG
Sbjct: 61  LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120

Query: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAG 180
           GLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAG
Sbjct: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAG 180

Query: 181 LMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELW 240
           LMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELW
Sbjct: 181 LMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELW 240

Query: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
           DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD
Sbjct: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300

Query: 301 IDPYSAADMILKEIIGGGLSVQEN 324
           IDPYSAADMILKEIIGGGLSVQEN
Sbjct: 301 IDPYSAADMILKEIIGGGLSVQEN 324


>sp|O58012|Y274_PYRHO HYPOTHETICAL PROTEIN PH0274 >gi|7518560|pir||C71452 hypothetical
           protein PH0274 - Pyrococcus horikoshii
           >gi|3256663|dbj|BAA29346.1| (AP000001) 317aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 317
           
 Score =  534 bits (1360), Expect = e-151
 Identities = 258/315 (81%), Positives = 294/315 (92%), Gaps = 2/315 (0%)

Query: 2   IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
           IDELIER+KKGDRRA A+LITLVENDE KA+ II+KIYPLTGNA+IVGITGPPGAGKSTL
Sbjct: 4   IDELIERLKKGDRRAVAKLITLVENDESKAKVIIKKIYPLTGNAHIVGITGPPGAGKSTL 63

Query: 62  LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
           LDKLIKEAR+EGLIVGVIA+DPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG
Sbjct: 64  LDKLIKEARREGLIVGVIAVDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 123

Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
           L+KATNDAIK+LDAYGCDVIFVETVGVGQ+EVDIVKTADTVVLVT+PGLGDDVQTIKAGL
Sbjct: 124 LSKATNDAIKILDAYGCDVIFVETVGVGQIEVDIVKTADTVVLVTIPGLGDDVQTIKAGL 183

Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWD 241
           MEIADIFV+NKAD+EGAD TYFEL LALDLE +KW ++GW+PP++ETV T  KG+KELW+
Sbjct: 184 MEIADIFVVNKADREGADITYFELTLALDLEKEKWEKIGWKPPIIETVGTTGKGVKELWE 243

Query: 242 KIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKDI 301
           KIKEH++FLE SG+L EKRR RIEEE+KTI++GI+A KVEAS+   EFE+II  V  KD+
Sbjct: 244 KIKEHKKFLEESGKLAEKRRTRIEEEVKTIIAGIVAKKVEASL--SEFEDIISMVLNKDL 301

Query: 302 DPYSAADMILKEIIG 316
           DPYSAAD++L++I+G
Sbjct: 302 DPYSAADLVLEKIVG 316


>emb|CAB70630.1| (AL137242) putative transport system kinase [Streptomyces
           coelicolor A3(2)]
           Length = 318
           
 Score =  305 bits (772), Expect = 6e-82
 Identities = 154/317 (48%), Positives = 215/317 (67%), Gaps = 3/317 (0%)

Query: 2   IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
           +  L+ + ++G  RA ARLI+LVE    + RE++  + PLTGNAY+VG+TG PG GKST 
Sbjct: 4   VSSLVAQAREGRPRAVARLISLVEGASPQLREVMEALAPLTGNAYVVGLTGSPGVGKSTS 63

Query: 62  LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
              L+   RK+G  VGV+A+DP+SPF+GGALLGDR+RM  H++DPGV+IRSMATRG LGG
Sbjct: 64  TSALVTAYRKQGRRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGHLGG 123

Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
           LA A   AI+VLDA GCDV+ VETVGVGQ EV+I   ADT V++  PG+GD +Q  KAG+
Sbjct: 124 LAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVEIASQADTSVVLLAPGMGDGIQAAKAGI 183

Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWRELG-WRPPVVETVATMNKGIKELW 240
           +EI D++V+NKAD++GADAT  ELN  L L   + R  G WRPP+V+TVA   +G+ E+ 
Sbjct: 184 LEIGDVYVVNKADRDGADATARELNHMLGL--GEARAAGDWRPPIVKTVAARGEGVDEVV 241

Query: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
           + +++HR ++E    L E+RR R   E++TI    +  ++           +  R+   +
Sbjct: 242 EALEKHRAWMEERDVLTERRRARAAREVETIAVTTLRERIGDLHGDRRLGALAERIVAGE 301

Query: 301 IDPYSAADMILKEIIGG 317
           +DPY AAD ++  +  G
Sbjct: 302 LDPYRAADELVAGLTRG 318


>gb|AAG19167.1| (AE005014) Vng0674c [Halobacterium sp. NRC-1]
           Length = 324
           
 Score =  297 bits (752), Expect = 1e-79
 Identities = 155/312 (49%), Positives = 206/312 (65%), Gaps = 2/312 (0%)

Query: 4   ELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLLD 63
           +L+  +  G  RA AR IT +E+  +  R+I+  +YP TG A ++GITG PG+GKSTL+D
Sbjct: 7   DLVADLLAGKHRALARAITKIEDRNDGYRDIVSALYPHTGQADVIGITGSPGSGKSTLVD 66

Query: 64  KLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLA 123
           KL  + R+ GL VGVIA+DP+SPFTGGA+LGDRIRM   +TD  VF RSM+ RGSLGGL+
Sbjct: 67  KLASQYRERGLTVGVIAVDPSSPFTGGAVLGDRIRMASTATDMDVFFRSMSARGSLGGLS 126

Query: 124 KATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLME 183
            AT DA+K LDA+G D + +ETVG GQ EVDIVKTADTV ++  P  GDDVQ +KAG++E
Sbjct: 127 TATADAVKALDAFGKDKVIIETVGAGQNEVDIVKTADTVAVLVPPSSGDDVQMLKAGILE 186

Query: 184 IADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDKI 243
           I D+FV+NKAD +GA+ T  EL   LDL  D   +  W P + ETVA    G+ +L D  
Sbjct: 187 IGDVFVVNKADLDGANKTVTELRNMLDLR-DPDDDTDWSPEITETVAERGTGVTDLLDVF 245

Query: 244 KEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASI-KRGEFEEIIRRVSQKDID 302
             H  +L+ SGR  EKRR R  EE++T++       +EA +  RG  +E++ R+      
Sbjct: 246 DAHTTWLDESGRRTEKRRTRYAEELRTLLRADANEVLEAELADRGGVDELVARIDSGATT 305

Query: 303 PYSAADMILKEI 314
           PY  A  +L  I
Sbjct: 306 PYEVAADVLDPI 317


>gi|11498887 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|3915402|sp|O28980|YC89_ARCFU HYPOTHETICAL PROTEIN
           AF1289 >gi|7483110|pir||H69410 conserved hypothetical
           protein AF1289 - Archaeoglobus fulgidus
           >gi|2649291|gb|AAB89957.1| (AE001015) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 346
           
 Score =  293 bits (741), Expect = 2e-78
 Identities = 152/340 (44%), Positives = 229/340 (66%), Gaps = 30/340 (8%)

Query: 3   DELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLL 62
           +E++E +  G+RRA AR IT VEN+  +++EI+R+I+  TG A++VG+TG PG GKSTL+
Sbjct: 4   EEIVEGLLSGNRRALARAITYVENEYPESKEIMRQIFAKTGRAHVVGLTGFPGVGKSTLV 63

Query: 63  DKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHS------TDPGVFIRSMATR 116
            KL +E R+ G  VG+IAIDP SPFTGGALLGDR+R+          TDPG+F RSM++R
Sbjct: 64  SKLTEEFRRRGKKVGIIAIDPGSPFTGGALLGDRLRLDGMDSRKQLWTDPGIFFRSMSSR 123

Query: 117 GSLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQT 176
           G  GGLA  T D +++LDA+G DVI VETVG GQ EVDI++ ADT V+V +P  GD++Q 
Sbjct: 124 GRAGGLAAKTGDVVRLLDAFGFDVILVETVGAGQSEVDIIEVADTSVVVMMPETGDEIQV 183

Query: 177 IKAGLMEIADIFVINKADKEGADAT--YFELNLALDLESDKW------------------ 216
            KAG++EI DI+V+NKAD  GA+    +    L+LD ES +                   
Sbjct: 184 NKAGILEIGDIYVVNKADLGGAEKVERWLRYMLSLDEESVQMLSQMTHADEARVQSGEFF 243

Query: 217 -RELGWRPPVVETVATMNKGIKELWDKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGI 275
            R  GW PPV++TVA   +GIKEL D I+EH ++++++G ++++RR+R++ E+  IV   
Sbjct: 244 ERRKGWNPPVIKTVADRGEGIKELADAIEEHFDYMKKTGLIEKRRRERVKRELFEIVMND 303

Query: 276 IAGKVEASIKRGEFEEIIRRVSQKDIDPYSAADMILKEII 315
           +   V+   ++  + +++ ++ + + DPY+AA+ I++E+I
Sbjct: 304 VIKLVK---EKTNYRDLLVKLLKGETDPYTAAEQIVEEVI 340


>pir||G72549 hypothetical protein APE1683 - Aeropyrum pernix (strain K1)
           >gi|5105371|dbj|BAA80684.1| (AP000062) 313aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 313
           
 Score =  266 bits (672), Expect = 3e-70
 Identities = 138/302 (45%), Positives = 196/302 (64%), Gaps = 2/302 (0%)

Query: 12  GDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARK 71
           G+ RA  RL+TLVEN   +A E++ ++    G A ++G TG PGAGKSTL+ ++I   R+
Sbjct: 5   GNLRALGRLLTLVENPGSEAVELLERLSSRAGRAQVIGFTGIPGAGKSTLVSRVITGLRR 64

Query: 72  EGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLAKATNDAIK 131
            G  V V+AIDPTSPF+GG+++GDR+RMQ H+ DPGVFIRS+ TRG  GGL+ A    I+
Sbjct: 65  RGYRVAVVAIDPTSPFSGGSIMGDRLRMQEHAADPGVFIRSIPTRGIKGGLSMAALAMIE 124

Query: 132 VLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLMEIADIFVIN 191
           V DA G D I +ETVGVGQ EVDI+  A T+++VT+PG GDDVQ +KAG+MEI DI+V+N
Sbjct: 125 VFDAMGYDKIIIETVGVGQSEVDIINAAHTIIVVTMPGAGDDVQALKAGVMEIGDIYVVN 184

Query: 192 KADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDKIKEHREFLE 251
           K+DK  A+ T   L  AL+ E    RE GWRP +V+T A + +GI  L D I+EH  F  
Sbjct: 185 KSDKPEANKTAAYLQFALEKEDIGRRESGWRPKLVKTSAVLGQGIDPLVDAIEEHWRFAR 244

Query: 252 RSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKDIDPYSAADMIL 311
            +G   EK + R     K +   +++ KV A+++      ++   +      + AA+++ 
Sbjct: 245 NTGLHTEKVKARRLLLAKMLAESLLSSKVSAAME--VHRTLLEEAAASGKGLFRAAEVVA 302

Query: 312 KE 313
           +E
Sbjct: 303 RE 304


>pir||H75358 LAO/AO transport system kinase - Deinococcus radiodurans  (strain
           R1) >gi|6459519|gb|AAF11302.1|AE002016_4 (AE002016)
           LAO/AO transport system kinase [Deinococcus radiodurans]
           Length = 306
           
 Score =  245 bits (620), Expect = 4e-64
 Identities = 135/312 (43%), Positives = 193/312 (61%), Gaps = 10/312 (3%)

Query: 2   IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
           +  L  R + GDRRA AR +TL E     AR ++R      G A ++G+TG PG+GKSTL
Sbjct: 3   VQTLEARYRAGDRRALARAVTLAEAGLPSARPLLRAARERAGRATVLGVTGSPGSGKSTL 62

Query: 62  LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
            D LI E R  G  V V+A+DP+SP++GGA+LGDRIRM RH  D GVF+RS+A+RG+LGG
Sbjct: 63  TDALIAELRARGERVAVLAVDPSSPYSGGAILGDRIRMLRHHADEGVFVRSLASRGALGG 122

Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
           L+  T   + +LD  G D + +ETVGVGQ EVDI    D  +LV  P  GD +Q  KAG+
Sbjct: 123 LSAQTLPVLALLDGAGFDWVILETVGVGQSEVDIAAVCDHTLLVLTPAGGDGIQAFKAGI 182

Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWR-ELGWRPPVVETVATMNKGIKELW 240
           MEIAD+  +NKAD  GA+ T  EL  A  L    W  E  W  P+  TVA+  +G+ ++ 
Sbjct: 183 MEIADVIAVNKADLPGAERTVRELMAAQGL---GWHDEHTWFAPIRRTVASRGEGVDQII 239

Query: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
           + +++HRE L  +G L+ +R +R E E++T+V   +  +  A+       ++  RV++ +
Sbjct: 240 EAVRQHREHLGETG-LQGRRERRAEFEVRTLVQERLLQRARAA-----GADLYARVARGE 293

Query: 301 IDPYSAADMILK 312
           +D   AAD +L+
Sbjct: 294 LDTDVAADELLR 305


>emb|CAC11606.1| (AL445064) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 321
           
 Score =  240 bits (606), Expect = 2e-62
 Identities = 122/278 (43%), Positives = 186/278 (66%), Gaps = 9/278 (3%)

Query: 3   DELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLL 62
           D ++  +  GD+R  AR I+++E D +++ +IIR IY +TG A+I+GITGPPG GKST++
Sbjct: 4   DSIVRGISAGDQRIIARAISIIEEDNDRSYDIIRSIYGMTGRAHIIGITGPPGVGKSTMI 63

Query: 63  DKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGL 122
             L ++  + G  V ++A+D +SPF+GG +LG+RIRMQ   +  G+++RS++ RG  GGL
Sbjct: 64  GVLSRKLTEMGKKVSILAVDASSPFSGGTILGNRIRMQDTLSRYGIYMRSVSNRGMTGGL 123

Query: 123 AKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLM 182
           +++T + +KVLDA G D I +ETVG GQ ++DIV  ADTV++   PGLGD +Q IK+G+M
Sbjct: 124 SRSTWNIVKVLDAAGSDFIIIETVGAGQSDIDIVYLADTVIVTLAPGLGDSIQAIKSGMM 183

Query: 183 EIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDK 242
           EI DIFVINK D+E    ++F L    D+  + +   GW P VV T +   +G  +L   
Sbjct: 184 EIGDIFVINKMDRED---SFFALK---DIMDNVYERNGWMPRVVGTNSLKAEGYDDLIKA 237

Query: 243 IKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKV 280
           I +H++F E +G   +KRR R  EE++  +S I+  +V
Sbjct: 238 IGDHQKFSEMNG---DKRRIRYREEVRLALSRIVDRQV 272


>gb|AAK42429.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 315
           
 Score =  219 bits (551), Expect = 5e-56
 Identities = 116/299 (38%), Positives = 186/299 (61%), Gaps = 14/299 (4%)

Query: 2   IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
           + +LIE    G+  A ARL+T +E   ++    +  +   +GNA+++GITG PG+GKST+
Sbjct: 6   LSKLIEEALNGNELAIARLLTKIEYMTDEGISALGTLSKRSGNAHVIGITGIPGSGKSTI 65

Query: 62  LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
           +  LI+E    G  VGVI IDP+SP+T G+ +G+R+R Q  +    VF+RS+ +RG LGG
Sbjct: 66  IGGLIQEYVSRGHRVGVIVIDPSSPYTMGSFMGNRLRFQDKTMLKNVFVRSIGSRGYLGG 125

Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
           ++       + LD  G D I +ETVG GQ + ++ ++  T+++V++PG GDD+Q +KAG+
Sbjct: 126 ISAEALMLTEALDGLGYDKIIIETVGAGQTDTEVEQSVHTILVVSIPGAGDDIQALKAGI 185

Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWD 241
           MEI DI+V+NKAD++ A+  +  L  A+D     +R  GW+P +V+TVA  N+GI EL +
Sbjct: 186 MEIGDIYVLNKADRQDAELAFNTLKFAIDSAEISYRN-GWKPLIVKTVAIKNEGIIELVN 244

Query: 242 KIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
           KI++H  +L++    KE  +KRI +            K+   I R + +EII  + +K+
Sbjct: 245 KIEDHLNYLKQ----KELFKKRIIDR---------RAKIVELIARRKIDEIISEIVKKN 290


>sp|P71777|YE96_MYCTU HYPOTHETICAL 36.3 KDA PROTEIN RV1496 >gi|7476788|pir||C70712
           hypothetical protein Rv1496 - Mycobacterium tuberculosis
            (strain H37RV) >gi|1524243|emb|CAB02046.1| (Z79701)
           hypothetical protein Rv1496 [Mycobacterium tuberculosis]
           Length = 334
           
 Score =  217 bits (547), Expect = 1e-55
 Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 10/319 (3%)

Query: 2   IDELIERMKKGDRRATARLITLVENDE----EKAREIIRKIYPLTGNAYIVGITGPPGAG 57
           +D L   ++ GDR A  R ITLVE+      E+A++++ ++ P +GNA+ VGITG PG G
Sbjct: 11  VDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVG 70

Query: 58  KSTLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRG 117
           KST ++ L     + G  V V+A+DP+S  TGG++LGD+ RM R +  P  +IR   T G
Sbjct: 71  KSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSG 130

Query: 118 SLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTI 177
           +LGG+ +AT + + +L+A G DVI +ETVGVGQ EV +    DT VL+T+   GD +Q I
Sbjct: 131 TLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGI 190

Query: 178 KAGLMEIADIFVINKADKE---GADATYFELNLALDLESDKWRELGWRPPVVETVATMNK 234
           K G++E+ADI V+NKAD E    A     EL+ A+ L     RE  WRPPV+   A   +
Sbjct: 191 KKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYP--REALWRPPVLTMSAVEGR 248

Query: 235 GIKELWDKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEAS-IKRGEFEEII 293
           G+ ELWD ++ HR+ L  +G    +RR +  +    +V   +  +V ++   R    E+ 
Sbjct: 249 GLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELE 308

Query: 294 RRVSQKDIDPYSAADMILK 312
           RRV   ++ P  AA  IL+
Sbjct: 309 RRVRAGELTPALAAQQILE 327


>sp|P37895|YPLE_CAUCR HYPOTHETICAL 34.6 KD PROTEIN IN PLEC 3'REGION
           >gi|281462|pir||S27534 hypothetical protein -
           Caulobacter crescentus >gi|144274|gb|AAA23053.1|
           (M91449) ORF [Caulobacter crescentus]
           Length = 326
           
 Score =  193 bits (486), Expect = 2e-48
 Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 17/304 (5%)

Query: 2   IDELIERMKKGDRRATARLITLVEN----DEEKAREIIRKIYPLTGNAYIVGITGPPGAG 57
           ID L  R+  GDR A AR ITLVE+     +  AR ++ ++ PLTG A  +GITG PGAG
Sbjct: 7   IDSLEHRLVAGDRAALARAITLVESRRADHQVAARTLLSRLMPLTGRAQRIGITGVPGAG 66

Query: 58  KSTLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRG 117
           KST +++   +  + G  V V+A+DP+S   GG++LGD+ RM++ S     FIR   + G
Sbjct: 67  KSTTIERFGCKLVEAGHRVAVLAVDPSSGRHGGSILGDKTRMEQLSVQANAFIRPSPSGG 126

Query: 118 SLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTI 177
           +LGG+A+ T +A+ + +A G DV+ +ETVGVGQ E  +    D  + + +PG GD++Q I
Sbjct: 127 ALGGVARKTREAMLLCEAAGFDVVIIETVGVGQSETVVADMVDIFLALLIPGGGDELQGI 186

Query: 178 KAGLMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIK 237
           K GL+E+AD+ VINKAD + A A     +    L         W PPV+       +G+ 
Sbjct: 187 KKGLIELADLLVINKADADPAKAERSARDYRNALHILTPAHPDWTPPVLTASGLTGQGLD 246

Query: 238 ELWDKIKEHREFLERSGRLKEKR------------RKRIEEEIKTIVS-GIIAGKVEASI 284
            LW +I  HRE +  +G    +R            R R+E+  KT  +   +   +E ++
Sbjct: 247 VLWTQILRHREVMTANGARAARRADQDARWMWAMVRDRLEDAFKTAPAVAALVPDLETAV 306

Query: 285 KRGE 288
           + GE
Sbjct: 307 REGE 310


>pir||B75441 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1) >gi|6458791|gb|AAF10633.1|AE001957_1 (AE001957)
           conserved hypothetical protein [Deinococcus radiodurans]
           Length = 293
           
 Score =  185 bits (465), Expect = 6e-46
 Identities = 103/254 (40%), Positives = 151/254 (58%), Gaps = 8/254 (3%)

Query: 12  GDRRATARLITLVEN----DEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIK 67
           G RRA A+ ITLVE+     E++A+ ++ ++ P  G +  VG+TG PG GKSTL++ L  
Sbjct: 25  GSRRALAKAITLVESRRPAHEQEAQALLTELLPHAGRSLRVGLTGVPGVGKSTLIEALGL 84

Query: 68  EARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLAKATN 127
                G  V V+A+DP+S  TGG+++GD+ RM R +   G FIR   + G+LGG+A+ T 
Sbjct: 85  FLADAGHRVAVLAVDPSSQRTGGSIMGDKTRMPRLTVHEGAFIRPSPSGGTLGGVARRTR 144

Query: 128 DAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLMEIADI 187
           + I + +A G DV+ +ETVGVGQ E  +    D  VL+T+ G GD++Q IK G+ME+AD+
Sbjct: 145 ETITLCEAAGYDVLLIETVGVGQSETQVAGMTDLFVLLTLHGAGDELQGIKRGIMELADL 204

Query: 188 FVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDKIKEHR 247
            V+NKAD     A   +  L   L      +  WRP  +   A   +GI ELW K++E+ 
Sbjct: 205 CVVNKADTNPRAAIRAQTELRSALTLLTPHDAPWRPAALRASAVTGEGIPELWAKVQEYA 264

Query: 248 EFLERSGRLKEKRR 261
           E ++    L  KRR
Sbjct: 265 ETVD----LAAKRR 274


>sp|P27254|ARGK_ECOLI LAO/AO TRANSPORT SYSTEM KINASE >gi|7466551|pir||E65076 hypothetical
           protein in sbm-fba intergenic region - Escherichia coli
           (strain K-12) >gi|882447|gb|AAA69085.1| (U28377)
           ORF_o331; alternate name ygfD; orf2 of X66836
           [Escherichia coli] >gi|1789285|gb|AAC75955.1| (AE000375)
           putative nucleotide-binding protein [Escherichia coli
           K12]
           Length = 331
           
 Score =  185 bits (464), Expect = 8e-46
 Identities = 107/280 (38%), Positives = 162/280 (57%), Gaps = 17/280 (6%)

Query: 4   ELIERMKKGDRRATARLITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKS 59
           E I R+++G+R   A+ +TLVE+   +    + +++  I P  GN   +G+TG PGAGKS
Sbjct: 9   ESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKS 68

Query: 60  TLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSL 119
           T L+       +EGL V VIA+DP+SP TGG++LGD+ RM   +     FIR + + G L
Sbjct: 69  TFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 128

Query: 120 GGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKA 179
           GG ++   + + + +A G DV+ VETVGVGQ E ++ +  D  + + + G GDD+Q IK 
Sbjct: 129 GGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKK 188

Query: 180 GLMEIADIFVINKADKEGADATYFELNL---ALDLESDKWRELGWRPPVVETVATMNKGI 236
           GLME+AD+ VINK D +         ++   AL +   K+ E  W+P V+   A   +GI
Sbjct: 189 GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDE--WQPRVLTCSALEKRGI 246

Query: 237 KELWDKIKEHREFLERSGRLKEKR--------RKRIEEEI 268
            E+W  I + +  L  SGRL++ R        RK+ EEE+
Sbjct: 247 DEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEV 286


>dbj|BAB06673.1| (AP001517) unknown conserved protein in others [Bacillus
           halodurans]
           Length = 340
           
 Score =  176 bits (441), Expect = 4e-43
 Identities = 104/283 (36%), Positives = 158/283 (55%), Gaps = 17/283 (6%)

Query: 2   IDELIERMKKGDRRATARLITLVENDEEKAR----EIIRKIYPLTGNAYIVGITGPPGAG 57
           +++ I  +  GDR   AR ITL+E+  E+ R    E++  I P TG +  +GITG PGAG
Sbjct: 11  VEDYINGVLAGDRALLARAITLIESHSERHRPIATEVLNGIIPQTGKSIRIGITGVPGAG 70

Query: 58  KSTLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRG 117
           KSTL++ L      +G  V V+A+DP+S  T G++LGD+ RM+  S +   ++R   + G
Sbjct: 71  KSTLIEALGTMLCDKGHRVAVLAVDPSSQLTKGSILGDKTRMEELSRNKNAYVRPSPSSG 130

Query: 118 SLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTI 177
           +LGG+ + + + + + +A G DVI VETVGVGQ E  +    D  +++ + G GD++Q I
Sbjct: 131 TLGGVTRRSRETLLLCEAAGFDVIIVETVGVGQSEAVVRSMVDCFLVLMLTGAGDELQGI 190

Query: 178 KAGLMEIADIFVINKAD---KEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNK 234
           K G+ME+AD   INKAD   ++ A  T  E N  L          GW        A   +
Sbjct: 191 KKGVMEMADAIFINKADGPNRQVALKTKAEYNRLLHFLPQATE--GWETKAYTVSALTGE 248

Query: 235 GIKELWDKIKEHREFLERSGRLKEKRRKR--------IEEEIK 269
           GI E+WD I    +F + +G  +E+R K+        IE+E+K
Sbjct: 249 GISEMWDVIYSFFQFSKENGIFEERREKQALEWFYAVIEDELK 291


>pir||S22100 hypothetical protein 2 - Escherichia coli >gi|42946|emb|CAA47312.1|
           (X66836) orf2 [Escherichia coli]
           >gi|3647204|gb|AAC60783.1| (U65074) chromosome arginine
           transport ATPase [Escherichia coli]
           Length = 268
           
 Score =  171 bits (428), Expect = 1e-41
 Identities = 97/256 (37%), Positives = 150/256 (57%), Gaps = 9/256 (3%)

Query: 21  ITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARKEGLIV 76
           +TLVE+   +    + +++  I P  GN   +G+TG PGAGKST L+       +EGL V
Sbjct: 1   MTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 60

Query: 77  GVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLAKATNDAIKVLDAY 136
            VIA+DP+SP TGG++LGD+ RM   +     FIR + + G LGG ++   + + + +A 
Sbjct: 61  AVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAA 120

Query: 137 GCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLMEIADIFVINKADKE 196
           G DV+ VETVGVGQ E ++ +  D  + + + G GDD+Q IK GLME+AD+ VINK D +
Sbjct: 121 GYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGD 180

Query: 197 GADATYFELNL---ALDLESDKWRELGWRPPVVETVATMNKGIKELWDKIKEHREFLERS 253
                    ++   AL +   K+ E  W+P V+   A   +GI E+W  I + +  L  S
Sbjct: 181 NHTNVAIARHMYESALHILRRKYDE--WQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS 238

Query: 254 GRLKEKRRKRIEEEIK 269
           GRL++ R+++  E ++
Sbjct: 239 GRLQQVRQQQSVEWLR 254


>gb|AAF35933.1|AC005929_5 (AC005929) L6910.11 [Leishmania major]
           Length = 349
           
 Score =  149 bits (372), Expect = 5e-35
 Identities = 96/330 (29%), Positives = 167/330 (50%), Gaps = 12/330 (3%)

Query: 6   IERMKKGDRRATARLITLVEN----DEEKAREIIRKIYPLTGNAYI--VGITGPPGAGKS 59
           +E + KG+RR  A+ ITL E+    D  +   ++R+I+ +     +    ++G PG+GKS
Sbjct: 16  VEDIMKGNRRTLAKAITLAESSNPADSTRLGNLLREIHQMATVRTVPRFALSGSPGSGKS 75

Query: 60  TLLDKL-IKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGS 118
           +LLD L      K+ + VGV+A+DP+S  T G++LGD+ RM++  T    +IR   + G 
Sbjct: 76  SLLDTLGYYLCEKKNMHVGVLAVDPSSTITHGSILGDKTRMEKLGTHLNSYIRPSPSGGH 135

Query: 119 LGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIK 178
           LGG+     +A+++ +A   DV+FVETVGVGQ E       D ++L+  P  GD++Q IK
Sbjct: 136 LGGVTSRAWEALEIFEAARFDVVFVETVGVGQSETQCKDLTDMMILLVPPASGDELQGIK 195

Query: 179 AGLMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKE 238
            G++E+AD+ V+ K D          ++           + G+  PV+   A     + E
Sbjct: 196 KGVVEVADMVVVTKNDGRRKPLVQQTMSAYARAVMYTEEKQGFEKPVIAVSAEEGTNVPE 255

Query: 239 LWDKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQ 298
           LW+ + +       SG++   RR +  +         +  K    +   E + +  RV +
Sbjct: 256 LWEAMLKMWNARLESGQIAHLRRAQSTKHFYNYFEMELLAKAR-RMTNLEMQNMAHRVWE 314

Query: 299 KDIDPYSAADMI----LKEIIGGGLSVQEN 324
            ++ P  A D++    L+E +    +VQ +
Sbjct: 315 HEMTPREAGDIMVLRTLREHLAADAAVQHD 344


>sp|Q22111|YC5D_CAEEL HYPOTHETICAL 33.1 KD PROTEIN T02G5.13 IN CHROMOSOME II
           >gi|7506961|pir||T16792 hypothetical protein T02G5.13 -
           Caenorhabditis elegans >gi|1086785|gb|AAA82408.1|
           (U41105) good similarity to E. coli hypothetical 29.4 KD
           protein (SP:P27254) containing an ATP/GTP-binding site
           motif (PROSITE:PS0017) [Caenorhabditis elegans]
           Length = 298
           
 Score =  143 bits (358), Expect = 2e-33
 Identities = 94/284 (33%), Positives = 147/284 (51%), Gaps = 27/284 (9%)

Query: 48  VGITGPPGAGKSTLLDKLIKE-ARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDP 106
           VGI+G PG GKS+ ++ L  E     G  V V+ IDPTS  TGG++LGD  RMQ  S +P
Sbjct: 26  VGISGSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSAMTGGSVLGDLTRMQELSRNP 85

Query: 107 GVFIRSMATRGSLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVT 166
             +IR   T GSLGG+ +  ++A+ + +  G D++ +ETVGVGQ E  +    D + L+ 
Sbjct: 86  KAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVGQSETSVSDMCDMMCLLL 145

Query: 167 VPGLGDDVQTIKAGLMEIADIFVINKAD---KEGADATYFELNLALDL---ESDKWRELG 220
            P  GD++Q +K G+ME++D+ V+ K D   K  A  T  E   AL       D WR   
Sbjct: 146 SPAHGDELQGVKRGIMEMSDLLVVTKDDGDLKAKAKMTQAEYISALKFMRPRLDVWRPKV 205

Query: 221 WRPPVV--ETVATMNKGIKELWDKIKEHREF-LERSGRLKEKRRKRIEEEIKTIVS---- 273
            R  ++  E+V+ +   + E WD I E  +    R  ++K+     +++EI ++      
Sbjct: 206 MRSSIMDKESVSEVCSSLYEFWDTIGESGDLERRRQDQMKKWMWNHVKDEIMSVFQKHPK 265

Query: 274 -GIIAGKVEASIKRGEFEEIIRRVSQKDIDPYSAADMILKEIIG 316
              +A K+E  I+ G+            I P  AA+ +++   G
Sbjct: 266 IAHLAPKLENEIRSGK------------ITPGLAAETMIRTFFG 297


>dbj|BAB07515.1| (AP001520) unknown [Bacillus halodurans]
           Length = 1087
           
 Score =  136 bits (340), Expect = 3e-31
 Identities = 97/298 (32%), Positives = 158/298 (52%), Gaps = 30/298 (10%)

Query: 2   IDELIERMKKGDRRATARLITLVEND---EEKAREIIRKIYPLTG----NAYIVGITGPP 54
           I+   E++K+ + RA ARLIT+ E     +E A  +  K+  L      +  ++GITG  
Sbjct: 151 IENEFEQLKEKNVRAVARLITMAEEQAKTKEAAVTLDDKLVSLKKLNQPSPPVLGITGTG 210

Query: 55  GAGKSTLLDKLIKEARKE--GLIVGVIAIDPTSPFTGGALLGDRIRMQR-HSTDPGVFIR 111
           GAGKS+L D+L++    E     V +++IDPT   TGGALLGDRIRM   HS  P VF+R
Sbjct: 211 GAGKSSLTDELVRRFLNEFTDKTVAILSIDPTKQKTGGALLGDRIRMNAIHS--PRVFMR 268

Query: 112 SMATRGSLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLG 171
           S+ATRGS   ++++  DAI V+ A   D++ VET G+GQ + +I + AD  + V     G
Sbjct: 269 SLATRGSRTEISESIRDAIAVVKAAAYDLVIVETSGIGQGDAEITEIADISMYVMTSEYG 328

Query: 172 DDVQTIKAGLMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVAT 231
              Q  K  +++ AD+  INK D++G++     +         ++ E     PV  T+A+
Sbjct: 329 APSQLEKIDMIDFADVIAINKFDRKGSEDALRHVRKQYQRSHQRFDEPLEAMPVYGTIAS 388

Query: 232 -----------------MNKGIKELWD-KIKEHREFLERSGRLKEKRRKRIEEEIKTI 271
                            +NK  K  WD  I+  +E ++++  +  +R + + + ++T+
Sbjct: 389 QFNDIGTNTLFAAVIDILNKKCKTSWDTSIETSKEVMKQNIIIPPERTQYLRDIVQTV 446


>gb|AAA03042.1| (L10064) Unknown [Streptomyces cinnamonensis]
           Length = 94
           
 Score = 77.6 bits (188), Expect = 2e-13
 Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 4/93 (4%)

Query: 18  ARLITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARKEG 73
           AR ITLVE+   +    A+E++ ++ P +G A  VGI+G PG GKST +D L       G
Sbjct: 2   ARAITLVESTRPQHRALAQELLTELLPHSGRARRVGISGVPGVGKSTFIDALGVMLTSLG 61

Query: 74  LIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDP 106
             V V+A+DP+S  TGG++LGD+ RM+R S DP
Sbjct: 62  HRVAVLAVDPSSTRTGGSILGDKTRMERLSLDP 94


>sp|Q05072|YMU3_STRCM HYPOTHETICAL PROTEIN IN MUTB 3'REGION (ORF-C)
           >gi|538981|pir||C40595 hypothetical protein (mutB 3'
           region) - Streptomyces cinnamonensis (fragment)
           Length = 93
           
 Score = 74.9 bits (181), Expect = 1e-12
 Identities = 42/92 (45%), Positives = 59/92 (63%), Gaps = 4/92 (4%)

Query: 18  ARLITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARKEG 73
           AR ITLVE+   +    A+E++ ++ P +G A  VGI+G PG GKST +D L       G
Sbjct: 2   ARAITLVESTRPQHRALAQELLTELLPHSGRARRVGISGVPGVGKSTFIDALGVMLTSLG 61

Query: 74  LIVGVIAIDPTSPFTGGALLGDRIRMQRHSTD 105
             V V+A+DP+S  TGG++LGD+ RM+R S D
Sbjct: 62  HRVAVLAVDPSSTRTGGSILGDKTRMERLSLD 93


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.139    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117872313
Number of Sequences: 2977
Number of extensions: 4936745
Number of successful extensions: 26488
Number of sequences better than 1.0e-10: 20
Number of HSP's better than  0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26439
Number of HSP's gapped (non-prelim): 22
length of query: 324
length of database: 189,106,746
effective HSP length: 58
effective length of query: 266
effective length of database: 154,394,500
effective search space: 41068937000
effective search space used: 41068937000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)