BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2398 (PAB2398) DE:Lysine Arginine Ornithine TRANSPORT SYSTEM
KINASE
(324 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75215 lysine arginine ornithine transport system kinase PA... 636 0.0
sp|O58012|Y274_PYRHO HYPOTHETICAL PROTEIN PH0274 >gi|7518560|pir... 534 e-151
emb|CAB70630.1| (AL137242) putative transport system kinase [Str... 305 6e-82
gb|AAG19167.1| (AE005014) Vng0674c [Halobacterium sp. NRC-1] 297 1e-79
gi|11498887 conserved hypothetical protein [Archaeoglobus fulgid... 293 2e-78
pir||G72549 hypothetical protein APE1683 - Aeropyrum pernix (str... 266 3e-70
pir||H75358 LAO/AO transport system kinase - Deinococcus radiodu... 245 4e-64
emb|CAC11606.1| (AL445064) conserved hypothetical protein [Therm... 240 2e-62
gb|AAK42429.1| Conserved hypothetical protein [Sulfolobus solfat... 219 5e-56
sp|P71777|YE96_MYCTU HYPOTHETICAL 36.3 KDA PROTEIN RV1496 >gi|74... 217 1e-55
sp|P37895|YPLE_CAUCR HYPOTHETICAL 34.6 KD PROTEIN IN PLEC 3'REGI... 193 2e-48
pir||B75441 conserved hypothetical protein - Deinococcus radiodu... 185 6e-46
sp|P27254|ARGK_ECOLI LAO/AO TRANSPORT SYSTEM KINASE >gi|7466551|... 185 8e-46
dbj|BAB06673.1| (AP001517) unknown conserved protein in others [... 176 4e-43
pir||S22100 hypothetical protein 2 - Escherichia coli >gi|42946|... 171 1e-41
gb|AAF35933.1|AC005929_5 (AC005929) L6910.11 [Leishmania major] 149 5e-35
sp|Q22111|YC5D_CAEEL HYPOTHETICAL 33.1 KD PROTEIN T02G5.13 IN CH... 143 2e-33
dbj|BAB07515.1| (AP001520) unknown [Bacillus halodurans] 136 3e-31
gb|AAA03042.1| (L10064) Unknown [Streptomyces cinnamonensis] 78 2e-13
sp|Q05072|YMU3_STRCM HYPOTHETICAL PROTEIN IN MUTB 3'REGION (ORF-... 75 1e-12
>pir||F75215 lysine arginine ornithine transport system kinase PAB2398 -
Pyrococcus abyssi (strain Orsay)
>gi|5457682|emb|CAB49173.1| (AJ248283) Lysine Arginine
Ornithine TRANSPORT SYSTEM KINASE [Pyrococcus abyssi]
Length = 324
Score = 636 bits (1622), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MIDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKST 60
MIDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKST
Sbjct: 1 MIDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKST 60
Query: 61 LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120
LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG
Sbjct: 61 LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120
Query: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAG 180
GLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAG
Sbjct: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAG 180
Query: 181 LMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELW 240
LMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELW
Sbjct: 181 LMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELW 240
Query: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD
Sbjct: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
Query: 301 IDPYSAADMILKEIIGGGLSVQEN 324
IDPYSAADMILKEIIGGGLSVQEN
Sbjct: 301 IDPYSAADMILKEIIGGGLSVQEN 324
>sp|O58012|Y274_PYRHO HYPOTHETICAL PROTEIN PH0274 >gi|7518560|pir||C71452 hypothetical
protein PH0274 - Pyrococcus horikoshii
>gi|3256663|dbj|BAA29346.1| (AP000001) 317aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 317
Score = 534 bits (1360), Expect = e-151
Identities = 258/315 (81%), Positives = 294/315 (92%), Gaps = 2/315 (0%)
Query: 2 IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
IDELIER+KKGDRRA A+LITLVENDE KA+ II+KIYPLTGNA+IVGITGPPGAGKSTL
Sbjct: 4 IDELIERLKKGDRRAVAKLITLVENDESKAKVIIKKIYPLTGNAHIVGITGPPGAGKSTL 63
Query: 62 LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
LDKLIKEAR+EGLIVGVIA+DPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG
Sbjct: 64 LDKLIKEARREGLIVGVIAVDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 123
Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
L+KATNDAIK+LDAYGCDVIFVETVGVGQ+EVDIVKTADTVVLVT+PGLGDDVQTIKAGL
Sbjct: 124 LSKATNDAIKILDAYGCDVIFVETVGVGQIEVDIVKTADTVVLVTIPGLGDDVQTIKAGL 183
Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWD 241
MEIADIFV+NKAD+EGAD TYFEL LALDLE +KW ++GW+PP++ETV T KG+KELW+
Sbjct: 184 MEIADIFVVNKADREGADITYFELTLALDLEKEKWEKIGWKPPIIETVGTTGKGVKELWE 243
Query: 242 KIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKDI 301
KIKEH++FLE SG+L EKRR RIEEE+KTI++GI+A KVEAS+ EFE+II V KD+
Sbjct: 244 KIKEHKKFLEESGKLAEKRRTRIEEEVKTIIAGIVAKKVEASL--SEFEDIISMVLNKDL 301
Query: 302 DPYSAADMILKEIIG 316
DPYSAAD++L++I+G
Sbjct: 302 DPYSAADLVLEKIVG 316
>emb|CAB70630.1| (AL137242) putative transport system kinase [Streptomyces
coelicolor A3(2)]
Length = 318
Score = 305 bits (772), Expect = 6e-82
Identities = 154/317 (48%), Positives = 215/317 (67%), Gaps = 3/317 (0%)
Query: 2 IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
+ L+ + ++G RA ARLI+LVE + RE++ + PLTGNAY+VG+TG PG GKST
Sbjct: 4 VSSLVAQAREGRPRAVARLISLVEGASPQLREVMEALAPLTGNAYVVGLTGSPGVGKSTS 63
Query: 62 LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
L+ RK+G VGV+A+DP+SPF+GGALLGDR+RM H++DPGV+IRSMATRG LGG
Sbjct: 64 TSALVTAYRKQGRRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGHLGG 123
Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
LA A AI+VLDA GCDV+ VETVGVGQ EV+I ADT V++ PG+GD +Q KAG+
Sbjct: 124 LAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVEIASQADTSVVLLAPGMGDGIQAAKAGI 183
Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWRELG-WRPPVVETVATMNKGIKELW 240
+EI D++V+NKAD++GADAT ELN L L + R G WRPP+V+TVA +G+ E+
Sbjct: 184 LEIGDVYVVNKADRDGADATARELNHMLGL--GEARAAGDWRPPIVKTVAARGEGVDEVV 241
Query: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
+ +++HR ++E L E+RR R E++TI + ++ + R+ +
Sbjct: 242 EALEKHRAWMEERDVLTERRRARAAREVETIAVTTLRERIGDLHGDRRLGALAERIVAGE 301
Query: 301 IDPYSAADMILKEIIGG 317
+DPY AAD ++ + G
Sbjct: 302 LDPYRAADELVAGLTRG 318
>gb|AAG19167.1| (AE005014) Vng0674c [Halobacterium sp. NRC-1]
Length = 324
Score = 297 bits (752), Expect = 1e-79
Identities = 155/312 (49%), Positives = 206/312 (65%), Gaps = 2/312 (0%)
Query: 4 ELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLLD 63
+L+ + G RA AR IT +E+ + R+I+ +YP TG A ++GITG PG+GKSTL+D
Sbjct: 7 DLVADLLAGKHRALARAITKIEDRNDGYRDIVSALYPHTGQADVIGITGSPGSGKSTLVD 66
Query: 64 KLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLA 123
KL + R+ GL VGVIA+DP+SPFTGGA+LGDRIRM +TD VF RSM+ RGSLGGL+
Sbjct: 67 KLASQYRERGLTVGVIAVDPSSPFTGGAVLGDRIRMASTATDMDVFFRSMSARGSLGGLS 126
Query: 124 KATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLME 183
AT DA+K LDA+G D + +ETVG GQ EVDIVKTADTV ++ P GDDVQ +KAG++E
Sbjct: 127 TATADAVKALDAFGKDKVIIETVGAGQNEVDIVKTADTVAVLVPPSSGDDVQMLKAGILE 186
Query: 184 IADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDKI 243
I D+FV+NKAD +GA+ T EL LDL D + W P + ETVA G+ +L D
Sbjct: 187 IGDVFVVNKADLDGANKTVTELRNMLDLR-DPDDDTDWSPEITETVAERGTGVTDLLDVF 245
Query: 244 KEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASI-KRGEFEEIIRRVSQKDID 302
H +L+ SGR EKRR R EE++T++ +EA + RG +E++ R+
Sbjct: 246 DAHTTWLDESGRRTEKRRTRYAEELRTLLRADANEVLEAELADRGGVDELVARIDSGATT 305
Query: 303 PYSAADMILKEI 314
PY A +L I
Sbjct: 306 PYEVAADVLDPI 317
>gi|11498887 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915402|sp|O28980|YC89_ARCFU HYPOTHETICAL PROTEIN
AF1289 >gi|7483110|pir||H69410 conserved hypothetical
protein AF1289 - Archaeoglobus fulgidus
>gi|2649291|gb|AAB89957.1| (AE001015) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 346
Score = 293 bits (741), Expect = 2e-78
Identities = 152/340 (44%), Positives = 229/340 (66%), Gaps = 30/340 (8%)
Query: 3 DELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLL 62
+E++E + G+RRA AR IT VEN+ +++EI+R+I+ TG A++VG+TG PG GKSTL+
Sbjct: 4 EEIVEGLLSGNRRALARAITYVENEYPESKEIMRQIFAKTGRAHVVGLTGFPGVGKSTLV 63
Query: 63 DKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHS------TDPGVFIRSMATR 116
KL +E R+ G VG+IAIDP SPFTGGALLGDR+R+ TDPG+F RSM++R
Sbjct: 64 SKLTEEFRRRGKKVGIIAIDPGSPFTGGALLGDRLRLDGMDSRKQLWTDPGIFFRSMSSR 123
Query: 117 GSLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQT 176
G GGLA T D +++LDA+G DVI VETVG GQ EVDI++ ADT V+V +P GD++Q
Sbjct: 124 GRAGGLAAKTGDVVRLLDAFGFDVILVETVGAGQSEVDIIEVADTSVVVMMPETGDEIQV 183
Query: 177 IKAGLMEIADIFVINKADKEGADAT--YFELNLALDLESDKW------------------ 216
KAG++EI DI+V+NKAD GA+ + L+LD ES +
Sbjct: 184 NKAGILEIGDIYVVNKADLGGAEKVERWLRYMLSLDEESVQMLSQMTHADEARVQSGEFF 243
Query: 217 -RELGWRPPVVETVATMNKGIKELWDKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGI 275
R GW PPV++TVA +GIKEL D I+EH ++++++G ++++RR+R++ E+ IV
Sbjct: 244 ERRKGWNPPVIKTVADRGEGIKELADAIEEHFDYMKKTGLIEKRRRERVKRELFEIVMND 303
Query: 276 IAGKVEASIKRGEFEEIIRRVSQKDIDPYSAADMILKEII 315
+ V+ ++ + +++ ++ + + DPY+AA+ I++E+I
Sbjct: 304 VIKLVK---EKTNYRDLLVKLLKGETDPYTAAEQIVEEVI 340
>pir||G72549 hypothetical protein APE1683 - Aeropyrum pernix (strain K1)
>gi|5105371|dbj|BAA80684.1| (AP000062) 313aa long
hypothetical protein [Aeropyrum pernix]
Length = 313
Score = 266 bits (672), Expect = 3e-70
Identities = 138/302 (45%), Positives = 196/302 (64%), Gaps = 2/302 (0%)
Query: 12 GDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARK 71
G+ RA RL+TLVEN +A E++ ++ G A ++G TG PGAGKSTL+ ++I R+
Sbjct: 5 GNLRALGRLLTLVENPGSEAVELLERLSSRAGRAQVIGFTGIPGAGKSTLVSRVITGLRR 64
Query: 72 EGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLAKATNDAIK 131
G V V+AIDPTSPF+GG+++GDR+RMQ H+ DPGVFIRS+ TRG GGL+ A I+
Sbjct: 65 RGYRVAVVAIDPTSPFSGGSIMGDRLRMQEHAADPGVFIRSIPTRGIKGGLSMAALAMIE 124
Query: 132 VLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLMEIADIFVIN 191
V DA G D I +ETVGVGQ EVDI+ A T+++VT+PG GDDVQ +KAG+MEI DI+V+N
Sbjct: 125 VFDAMGYDKIIIETVGVGQSEVDIINAAHTIIVVTMPGAGDDVQALKAGVMEIGDIYVVN 184
Query: 192 KADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDKIKEHREFLE 251
K+DK A+ T L AL+ E RE GWRP +V+T A + +GI L D I+EH F
Sbjct: 185 KSDKPEANKTAAYLQFALEKEDIGRRESGWRPKLVKTSAVLGQGIDPLVDAIEEHWRFAR 244
Query: 252 RSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKDIDPYSAADMIL 311
+G EK + R K + +++ KV A+++ ++ + + AA+++
Sbjct: 245 NTGLHTEKVKARRLLLAKMLAESLLSSKVSAAME--VHRTLLEEAAASGKGLFRAAEVVA 302
Query: 312 KE 313
+E
Sbjct: 303 RE 304
>pir||H75358 LAO/AO transport system kinase - Deinococcus radiodurans (strain
R1) >gi|6459519|gb|AAF11302.1|AE002016_4 (AE002016)
LAO/AO transport system kinase [Deinococcus radiodurans]
Length = 306
Score = 245 bits (620), Expect = 4e-64
Identities = 135/312 (43%), Positives = 193/312 (61%), Gaps = 10/312 (3%)
Query: 2 IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
+ L R + GDRRA AR +TL E AR ++R G A ++G+TG PG+GKSTL
Sbjct: 3 VQTLEARYRAGDRRALARAVTLAEAGLPSARPLLRAARERAGRATVLGVTGSPGSGKSTL 62
Query: 62 LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
D LI E R G V V+A+DP+SP++GGA+LGDRIRM RH D GVF+RS+A+RG+LGG
Sbjct: 63 TDALIAELRARGERVAVLAVDPSSPYSGGAILGDRIRMLRHHADEGVFVRSLASRGALGG 122
Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
L+ T + +LD G D + +ETVGVGQ EVDI D +LV P GD +Q KAG+
Sbjct: 123 LSAQTLPVLALLDGAGFDWVILETVGVGQSEVDIAAVCDHTLLVLTPAGGDGIQAFKAGI 182
Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWR-ELGWRPPVVETVATMNKGIKELW 240
MEIAD+ +NKAD GA+ T EL A L W E W P+ TVA+ +G+ ++
Sbjct: 183 MEIADVIAVNKADLPGAERTVRELMAAQGL---GWHDEHTWFAPIRRTVASRGEGVDQII 239
Query: 241 DKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
+ +++HRE L +G L+ +R +R E E++T+V + + A+ ++ RV++ +
Sbjct: 240 EAVRQHREHLGETG-LQGRRERRAEFEVRTLVQERLLQRARAA-----GADLYARVARGE 293
Query: 301 IDPYSAADMILK 312
+D AAD +L+
Sbjct: 294 LDTDVAADELLR 305
>emb|CAC11606.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 321
Score = 240 bits (606), Expect = 2e-62
Identities = 122/278 (43%), Positives = 186/278 (66%), Gaps = 9/278 (3%)
Query: 3 DELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLL 62
D ++ + GD+R AR I+++E D +++ +IIR IY +TG A+I+GITGPPG GKST++
Sbjct: 4 DSIVRGISAGDQRIIARAISIIEEDNDRSYDIIRSIYGMTGRAHIIGITGPPGVGKSTMI 63
Query: 63 DKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGL 122
L ++ + G V ++A+D +SPF+GG +LG+RIRMQ + G+++RS++ RG GGL
Sbjct: 64 GVLSRKLTEMGKKVSILAVDASSPFSGGTILGNRIRMQDTLSRYGIYMRSVSNRGMTGGL 123
Query: 123 AKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLM 182
+++T + +KVLDA G D I +ETVG GQ ++DIV ADTV++ PGLGD +Q IK+G+M
Sbjct: 124 SRSTWNIVKVLDAAGSDFIIIETVGAGQSDIDIVYLADTVIVTLAPGLGDSIQAIKSGMM 183
Query: 183 EIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDK 242
EI DIFVINK D+E ++F L D+ + + GW P VV T + +G +L
Sbjct: 184 EIGDIFVINKMDRED---SFFALK---DIMDNVYERNGWMPRVVGTNSLKAEGYDDLIKA 237
Query: 243 IKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKV 280
I +H++F E +G +KRR R EE++ +S I+ +V
Sbjct: 238 IGDHQKFSEMNG---DKRRIRYREEVRLALSRIVDRQV 272
>gb|AAK42429.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 315
Score = 219 bits (551), Expect = 5e-56
Identities = 116/299 (38%), Positives = 186/299 (61%), Gaps = 14/299 (4%)
Query: 2 IDELIERMKKGDRRATARLITLVENDEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTL 61
+ +LIE G+ A ARL+T +E ++ + + +GNA+++GITG PG+GKST+
Sbjct: 6 LSKLIEEALNGNELAIARLLTKIEYMTDEGISALGTLSKRSGNAHVIGITGIPGSGKSTI 65
Query: 62 LDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGG 121
+ LI+E G VGVI IDP+SP+T G+ +G+R+R Q + VF+RS+ +RG LGG
Sbjct: 66 IGGLIQEYVSRGHRVGVIVIDPSSPYTMGSFMGNRLRFQDKTMLKNVFVRSIGSRGYLGG 125
Query: 122 LAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGL 181
++ + LD G D I +ETVG GQ + ++ ++ T+++V++PG GDD+Q +KAG+
Sbjct: 126 ISAEALMLTEALDGLGYDKIIIETVGAGQTDTEVEQSVHTILVVSIPGAGDDIQALKAGI 185
Query: 182 MEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWD 241
MEI DI+V+NKAD++ A+ + L A+D +R GW+P +V+TVA N+GI EL +
Sbjct: 186 MEIGDIYVLNKADRQDAELAFNTLKFAIDSAEISYRN-GWKPLIVKTVAIKNEGIIELVN 244
Query: 242 KIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQKD 300
KI++H +L++ KE +KRI + K+ I R + +EII + +K+
Sbjct: 245 KIEDHLNYLKQ----KELFKKRIIDR---------RAKIVELIARRKIDEIISEIVKKN 290
>sp|P71777|YE96_MYCTU HYPOTHETICAL 36.3 KDA PROTEIN RV1496 >gi|7476788|pir||C70712
hypothetical protein Rv1496 - Mycobacterium tuberculosis
(strain H37RV) >gi|1524243|emb|CAB02046.1| (Z79701)
hypothetical protein Rv1496 [Mycobacterium tuberculosis]
Length = 334
Score = 217 bits (547), Expect = 1e-55
Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 10/319 (3%)
Query: 2 IDELIERMKKGDRRATARLITLVENDE----EKAREIIRKIYPLTGNAYIVGITGPPGAG 57
+D L ++ GDR A R ITLVE+ E+A++++ ++ P +GNA+ VGITG PG G
Sbjct: 11 VDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVG 70
Query: 58 KSTLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRG 117
KST ++ L + G V V+A+DP+S TGG++LGD+ RM R + P +IR T G
Sbjct: 71 KSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSG 130
Query: 118 SLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTI 177
+LGG+ +AT + + +L+A G DVI +ETVGVGQ EV + DT VL+T+ GD +Q I
Sbjct: 131 TLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGI 190
Query: 178 KAGLMEIADIFVINKADKE---GADATYFELNLALDLESDKWRELGWRPPVVETVATMNK 234
K G++E+ADI V+NKAD E A EL+ A+ L RE WRPPV+ A +
Sbjct: 191 KKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYP--REALWRPPVLTMSAVEGR 248
Query: 235 GIKELWDKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEAS-IKRGEFEEII 293
G+ ELWD ++ HR+ L +G +RR + + +V + +V ++ R E+
Sbjct: 249 GLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELE 308
Query: 294 RRVSQKDIDPYSAADMILK 312
RRV ++ P AA IL+
Sbjct: 309 RRVRAGELTPALAAQQILE 327
>sp|P37895|YPLE_CAUCR HYPOTHETICAL 34.6 KD PROTEIN IN PLEC 3'REGION
>gi|281462|pir||S27534 hypothetical protein -
Caulobacter crescentus >gi|144274|gb|AAA23053.1|
(M91449) ORF [Caulobacter crescentus]
Length = 326
Score = 193 bits (486), Expect = 2e-48
Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 17/304 (5%)
Query: 2 IDELIERMKKGDRRATARLITLVEN----DEEKAREIIRKIYPLTGNAYIVGITGPPGAG 57
ID L R+ GDR A AR ITLVE+ + AR ++ ++ PLTG A +GITG PGAG
Sbjct: 7 IDSLEHRLVAGDRAALARAITLVESRRADHQVAARTLLSRLMPLTGRAQRIGITGVPGAG 66
Query: 58 KSTLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRG 117
KST +++ + + G V V+A+DP+S GG++LGD+ RM++ S FIR + G
Sbjct: 67 KSTTIERFGCKLVEAGHRVAVLAVDPSSGRHGGSILGDKTRMEQLSVQANAFIRPSPSGG 126
Query: 118 SLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTI 177
+LGG+A+ T +A+ + +A G DV+ +ETVGVGQ E + D + + +PG GD++Q I
Sbjct: 127 ALGGVARKTREAMLLCEAAGFDVVIIETVGVGQSETVVADMVDIFLALLIPGGGDELQGI 186
Query: 178 KAGLMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIK 237
K GL+E+AD+ VINKAD + A A + L W PPV+ +G+
Sbjct: 187 KKGLIELADLLVINKADADPAKAERSARDYRNALHILTPAHPDWTPPVLTASGLTGQGLD 246
Query: 238 ELWDKIKEHREFLERSGRLKEKR------------RKRIEEEIKTIVS-GIIAGKVEASI 284
LW +I HRE + +G +R R R+E+ KT + + +E ++
Sbjct: 247 VLWTQILRHREVMTANGARAARRADQDARWMWAMVRDRLEDAFKTAPAVAALVPDLETAV 306
Query: 285 KRGE 288
+ GE
Sbjct: 307 REGE 310
>pir||B75441 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458791|gb|AAF10633.1|AE001957_1 (AE001957)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 293
Score = 185 bits (465), Expect = 6e-46
Identities = 103/254 (40%), Positives = 151/254 (58%), Gaps = 8/254 (3%)
Query: 12 GDRRATARLITLVEN----DEEKAREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIK 67
G RRA A+ ITLVE+ E++A+ ++ ++ P G + VG+TG PG GKSTL++ L
Sbjct: 25 GSRRALAKAITLVESRRPAHEQEAQALLTELLPHAGRSLRVGLTGVPGVGKSTLIEALGL 84
Query: 68 EARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLAKATN 127
G V V+A+DP+S TGG+++GD+ RM R + G FIR + G+LGG+A+ T
Sbjct: 85 FLADAGHRVAVLAVDPSSQRTGGSIMGDKTRMPRLTVHEGAFIRPSPSGGTLGGVARRTR 144
Query: 128 DAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLMEIADI 187
+ I + +A G DV+ +ETVGVGQ E + D VL+T+ G GD++Q IK G+ME+AD+
Sbjct: 145 ETITLCEAAGYDVLLIETVGVGQSETQVAGMTDLFVLLTLHGAGDELQGIKRGIMELADL 204
Query: 188 FVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKELWDKIKEHR 247
V+NKAD A + L L + WRP + A +GI ELW K++E+
Sbjct: 205 CVVNKADTNPRAAIRAQTELRSALTLLTPHDAPWRPAALRASAVTGEGIPELWAKVQEYA 264
Query: 248 EFLERSGRLKEKRR 261
E ++ L KRR
Sbjct: 265 ETVD----LAAKRR 274
>sp|P27254|ARGK_ECOLI LAO/AO TRANSPORT SYSTEM KINASE >gi|7466551|pir||E65076 hypothetical
protein in sbm-fba intergenic region - Escherichia coli
(strain K-12) >gi|882447|gb|AAA69085.1| (U28377)
ORF_o331; alternate name ygfD; orf2 of X66836
[Escherichia coli] >gi|1789285|gb|AAC75955.1| (AE000375)
putative nucleotide-binding protein [Escherichia coli
K12]
Length = 331
Score = 185 bits (464), Expect = 8e-46
Identities = 107/280 (38%), Positives = 162/280 (57%), Gaps = 17/280 (6%)
Query: 4 ELIERMKKGDRRATARLITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKS 59
E I R+++G+R A+ +TLVE+ + + +++ I P GN +G+TG PGAGKS
Sbjct: 9 ESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKS 68
Query: 60 TLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSL 119
T L+ +EGL V VIA+DP+SP TGG++LGD+ RM + FIR + + G L
Sbjct: 69 TFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 128
Query: 120 GGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKA 179
GG ++ + + + +A G DV+ VETVGVGQ E ++ + D + + + G GDD+Q IK
Sbjct: 129 GGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKK 188
Query: 180 GLMEIADIFVINKADKEGADATYFELNL---ALDLESDKWRELGWRPPVVETVATMNKGI 236
GLME+AD+ VINK D + ++ AL + K+ E W+P V+ A +GI
Sbjct: 189 GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDE--WQPRVLTCSALEKRGI 246
Query: 237 KELWDKIKEHREFLERSGRLKEKR--------RKRIEEEI 268
E+W I + + L SGRL++ R RK+ EEE+
Sbjct: 247 DEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEV 286
>dbj|BAB06673.1| (AP001517) unknown conserved protein in others [Bacillus
halodurans]
Length = 340
Score = 176 bits (441), Expect = 4e-43
Identities = 104/283 (36%), Positives = 158/283 (55%), Gaps = 17/283 (6%)
Query: 2 IDELIERMKKGDRRATARLITLVENDEEKAR----EIIRKIYPLTGNAYIVGITGPPGAG 57
+++ I + GDR AR ITL+E+ E+ R E++ I P TG + +GITG PGAG
Sbjct: 11 VEDYINGVLAGDRALLARAITLIESHSERHRPIATEVLNGIIPQTGKSIRIGITGVPGAG 70
Query: 58 KSTLLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRG 117
KSTL++ L +G V V+A+DP+S T G++LGD+ RM+ S + ++R + G
Sbjct: 71 KSTLIEALGTMLCDKGHRVAVLAVDPSSQLTKGSILGDKTRMEELSRNKNAYVRPSPSSG 130
Query: 118 SLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTI 177
+LGG+ + + + + + +A G DVI VETVGVGQ E + D +++ + G GD++Q I
Sbjct: 131 TLGGVTRRSRETLLLCEAAGFDVIIVETVGVGQSEAVVRSMVDCFLVLMLTGAGDELQGI 190
Query: 178 KAGLMEIADIFVINKAD---KEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNK 234
K G+ME+AD INKAD ++ A T E N L GW A +
Sbjct: 191 KKGVMEMADAIFINKADGPNRQVALKTKAEYNRLLHFLPQATE--GWETKAYTVSALTGE 248
Query: 235 GIKELWDKIKEHREFLERSGRLKEKRRKR--------IEEEIK 269
GI E+WD I +F + +G +E+R K+ IE+E+K
Sbjct: 249 GISEMWDVIYSFFQFSKENGIFEERREKQALEWFYAVIEDELK 291
>pir||S22100 hypothetical protein 2 - Escherichia coli >gi|42946|emb|CAA47312.1|
(X66836) orf2 [Escherichia coli]
>gi|3647204|gb|AAC60783.1| (U65074) chromosome arginine
transport ATPase [Escherichia coli]
Length = 268
Score = 171 bits (428), Expect = 1e-41
Identities = 97/256 (37%), Positives = 150/256 (57%), Gaps = 9/256 (3%)
Query: 21 ITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARKEGLIV 76
+TLVE+ + + +++ I P GN +G+TG PGAGKST L+ +EGL V
Sbjct: 1 MTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 60
Query: 77 GVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLGGLAKATNDAIKVLDAY 136
VIA+DP+SP TGG++LGD+ RM + FIR + + G LGG ++ + + + +A
Sbjct: 61 AVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAA 120
Query: 137 GCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIKAGLMEIADIFVINKADKE 196
G DV+ VETVGVGQ E ++ + D + + + G GDD+Q IK GLME+AD+ VINK D +
Sbjct: 121 GYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGD 180
Query: 197 GADATYFELNL---ALDLESDKWRELGWRPPVVETVATMNKGIKELWDKIKEHREFLERS 253
++ AL + K+ E W+P V+ A +GI E+W I + + L S
Sbjct: 181 NHTNVAIARHMYESALHILRRKYDE--WQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS 238
Query: 254 GRLKEKRRKRIEEEIK 269
GRL++ R+++ E ++
Sbjct: 239 GRLQQVRQQQSVEWLR 254
>gb|AAF35933.1|AC005929_5 (AC005929) L6910.11 [Leishmania major]
Length = 349
Score = 149 bits (372), Expect = 5e-35
Identities = 96/330 (29%), Positives = 167/330 (50%), Gaps = 12/330 (3%)
Query: 6 IERMKKGDRRATARLITLVEN----DEEKAREIIRKIYPLTGNAYI--VGITGPPGAGKS 59
+E + KG+RR A+ ITL E+ D + ++R+I+ + + ++G PG+GKS
Sbjct: 16 VEDIMKGNRRTLAKAITLAESSNPADSTRLGNLLREIHQMATVRTVPRFALSGSPGSGKS 75
Query: 60 TLLDKL-IKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGS 118
+LLD L K+ + VGV+A+DP+S T G++LGD+ RM++ T +IR + G
Sbjct: 76 SLLDTLGYYLCEKKNMHVGVLAVDPSSTITHGSILGDKTRMEKLGTHLNSYIRPSPSGGH 135
Query: 119 LGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLGDDVQTIK 178
LGG+ +A+++ +A DV+FVETVGVGQ E D ++L+ P GD++Q IK
Sbjct: 136 LGGVTSRAWEALEIFEAARFDVVFVETVGVGQSETQCKDLTDMMILLVPPASGDELQGIK 195
Query: 179 AGLMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVATMNKGIKE 238
G++E+AD+ V+ K D ++ + G+ PV+ A + E
Sbjct: 196 KGVVEVADMVVVTKNDGRRKPLVQQTMSAYARAVMYTEEKQGFEKPVIAVSAEEGTNVPE 255
Query: 239 LWDKIKEHREFLERSGRLKEKRRKRIEEEIKTIVSGIIAGKVEASIKRGEFEEIIRRVSQ 298
LW+ + + SG++ RR + + + K + E + + RV +
Sbjct: 256 LWEAMLKMWNARLESGQIAHLRRAQSTKHFYNYFEMELLAKAR-RMTNLEMQNMAHRVWE 314
Query: 299 KDIDPYSAADMI----LKEIIGGGLSVQEN 324
++ P A D++ L+E + +VQ +
Sbjct: 315 HEMTPREAGDIMVLRTLREHLAADAAVQHD 344
>sp|Q22111|YC5D_CAEEL HYPOTHETICAL 33.1 KD PROTEIN T02G5.13 IN CHROMOSOME II
>gi|7506961|pir||T16792 hypothetical protein T02G5.13 -
Caenorhabditis elegans >gi|1086785|gb|AAA82408.1|
(U41105) good similarity to E. coli hypothetical 29.4 KD
protein (SP:P27254) containing an ATP/GTP-binding site
motif (PROSITE:PS0017) [Caenorhabditis elegans]
Length = 298
Score = 143 bits (358), Expect = 2e-33
Identities = 94/284 (33%), Positives = 147/284 (51%), Gaps = 27/284 (9%)
Query: 48 VGITGPPGAGKSTLLDKLIKE-ARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDP 106
VGI+G PG GKS+ ++ L E G V V+ IDPTS TGG++LGD RMQ S +P
Sbjct: 26 VGISGSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSAMTGGSVLGDLTRMQELSRNP 85
Query: 107 GVFIRSMATRGSLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVT 166
+IR T GSLGG+ + ++A+ + + G D++ +ETVGVGQ E + D + L+
Sbjct: 86 KAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVGQSETSVSDMCDMMCLLL 145
Query: 167 VPGLGDDVQTIKAGLMEIADIFVINKAD---KEGADATYFELNLALDL---ESDKWRELG 220
P GD++Q +K G+ME++D+ V+ K D K A T E AL D WR
Sbjct: 146 SPAHGDELQGVKRGIMEMSDLLVVTKDDGDLKAKAKMTQAEYISALKFMRPRLDVWRPKV 205
Query: 221 WRPPVV--ETVATMNKGIKELWDKIKEHREF-LERSGRLKEKRRKRIEEEIKTIVS---- 273
R ++ E+V+ + + E WD I E + R ++K+ +++EI ++
Sbjct: 206 MRSSIMDKESVSEVCSSLYEFWDTIGESGDLERRRQDQMKKWMWNHVKDEIMSVFQKHPK 265
Query: 274 -GIIAGKVEASIKRGEFEEIIRRVSQKDIDPYSAADMILKEIIG 316
+A K+E I+ G+ I P AA+ +++ G
Sbjct: 266 IAHLAPKLENEIRSGK------------ITPGLAAETMIRTFFG 297
>dbj|BAB07515.1| (AP001520) unknown [Bacillus halodurans]
Length = 1087
Score = 136 bits (340), Expect = 3e-31
Identities = 97/298 (32%), Positives = 158/298 (52%), Gaps = 30/298 (10%)
Query: 2 IDELIERMKKGDRRATARLITLVEND---EEKAREIIRKIYPLTG----NAYIVGITGPP 54
I+ E++K+ + RA ARLIT+ E +E A + K+ L + ++GITG
Sbjct: 151 IENEFEQLKEKNVRAVARLITMAEEQAKTKEAAVTLDDKLVSLKKLNQPSPPVLGITGTG 210
Query: 55 GAGKSTLLDKLIKEARKE--GLIVGVIAIDPTSPFTGGALLGDRIRMQR-HSTDPGVFIR 111
GAGKS+L D+L++ E V +++IDPT TGGALLGDRIRM HS P VF+R
Sbjct: 211 GAGKSSLTDELVRRFLNEFTDKTVAILSIDPTKQKTGGALLGDRIRMNAIHS--PRVFMR 268
Query: 112 SMATRGSLGGLAKATNDAIKVLDAYGCDVIFVETVGVGQVEVDIVKTADTVVLVTVPGLG 171
S+ATRGS ++++ DAI V+ A D++ VET G+GQ + +I + AD + V G
Sbjct: 269 SLATRGSRTEISESIRDAIAVVKAAAYDLVIVETSGIGQGDAEITEIADISMYVMTSEYG 328
Query: 172 DDVQTIKAGLMEIADIFVINKADKEGADATYFELNLALDLESDKWRELGWRPPVVETVAT 231
Q K +++ AD+ INK D++G++ + ++ E PV T+A+
Sbjct: 329 APSQLEKIDMIDFADVIAINKFDRKGSEDALRHVRKQYQRSHQRFDEPLEAMPVYGTIAS 388
Query: 232 -----------------MNKGIKELWD-KIKEHREFLERSGRLKEKRRKRIEEEIKTI 271
+NK K WD I+ +E ++++ + +R + + + ++T+
Sbjct: 389 QFNDIGTNTLFAAVIDILNKKCKTSWDTSIETSKEVMKQNIIIPPERTQYLRDIVQTV 446
>gb|AAA03042.1| (L10064) Unknown [Streptomyces cinnamonensis]
Length = 94
Score = 77.6 bits (188), Expect = 2e-13
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 18 ARLITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARKEG 73
AR ITLVE+ + A+E++ ++ P +G A VGI+G PG GKST +D L G
Sbjct: 2 ARAITLVESTRPQHRALAQELLTELLPHSGRARRVGISGVPGVGKSTFIDALGVMLTSLG 61
Query: 74 LIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDP 106
V V+A+DP+S TGG++LGD+ RM+R S DP
Sbjct: 62 HRVAVLAVDPSSTRTGGSILGDKTRMERLSLDP 94
>sp|Q05072|YMU3_STRCM HYPOTHETICAL PROTEIN IN MUTB 3'REGION (ORF-C)
>gi|538981|pir||C40595 hypothetical protein (mutB 3'
region) - Streptomyces cinnamonensis (fragment)
Length = 93
Score = 74.9 bits (181), Expect = 1e-12
Identities = 42/92 (45%), Positives = 59/92 (63%), Gaps = 4/92 (4%)
Query: 18 ARLITLVENDEEK----AREIIRKIYPLTGNAYIVGITGPPGAGKSTLLDKLIKEARKEG 73
AR ITLVE+ + A+E++ ++ P +G A VGI+G PG GKST +D L G
Sbjct: 2 ARAITLVESTRPQHRALAQELLTELLPHSGRARRVGISGVPGVGKSTFIDALGVMLTSLG 61
Query: 74 LIVGVIAIDPTSPFTGGALLGDRIRMQRHSTD 105
V V+A+DP+S TGG++LGD+ RM+R S D
Sbjct: 62 HRVAVLAVDPSSTRTGGSILGDKTRMERLSLD 93
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117872313
Number of Sequences: 2977
Number of extensions: 4936745
Number of successful extensions: 26488
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26439
Number of HSP's gapped (non-prelim): 22
length of query: 324
length of database: 189,106,746
effective HSP length: 58
effective length of query: 266
effective length of database: 154,394,500
effective search space: 41068937000
effective search space used: 41068937000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)