BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2401 (PAB2401) DE:POTASSIUM CHANNEL, PUTATIVE
(191 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75211 probable potassium channel PAB2401 - Pyrococcus abys... 367 e-101
pir||D71247 hypothetical protein PH0235 - Pyrococcus horikoshii ... 334 3e-91
pir||G69053 conserved hypothetical protein MTH1402 - Methanobact... 164 6e-40
pir||E75211 probable potassium channel PAB2207 - Pyrococcus abys... 141 6e-33
pir||E71247 hypothetical protein PH0236 - Pyrococcus horikoshii ... 140 1e-32
gi|11499779 potassium channel, putative [Archaeoglobus fulgidus]... 125 3e-28
gb|AAG20247.1| (AE005100) potassium channel homolog; PchB [Halob... 108 5e-23
>pir||D75211 probable potassium channel PAB2401 - Pyrococcus abyssi (strain
Orsay) >gi|5457648|emb|CAB49139.1| (AJ248283) POTASSIUM
CHANNEL, PUTATIVE [Pyrococcus abyssi]
Length = 191
Score = 367 bits (931), Expect = e-101
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MRELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALE 60
MRELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALE
Sbjct: 1 MRELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALE 60
Query: 61 AAKKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVK 120
AAKKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVK
Sbjct: 61 AAKKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVK 120
Query: 121 VKKGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVGAGVDRL 180
VKKGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVGAGVDRL
Sbjct: 121 VKKGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVGAGVDRL 180
Query: 181 RELAGEEEEEE 191
RELAGEEEEEE
Sbjct: 181 RELAGEEEEEE 191
>pir||D71247 hypothetical protein PH0235 - Pyrococcus horikoshii
>gi|3256624|dbj|BAA29307.1| (AP000001) 190aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 190
Score = 334 bits (848), Expect = 3e-91
Identities = 169/190 (88%), Positives = 185/190 (96%)
Query: 1 MRELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALE 60
M+ELEEIR+CLIEM+N+SSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELT KVKKLALE
Sbjct: 1 MKELEEIRSCLIEMRNLSSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTLKVKKLALE 60
Query: 61 AAKKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVK 120
AAKKID+PESMLSVIEMANINEQISDSAYEIAD+VLRDVEPHPIIRKIMHDV+EEIGRV+
Sbjct: 61 AAKKIDDPESMLSVIEMANINEQISDSAYEIADLVLRDVEPHPIIRKIMHDVEEEIGRVR 120
Query: 121 VKKGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVGAGVDRL 180
V KGSIL+GKSLRQLKLPSKIGVRIIAIKRGN+YIY+P S+E+I+EGDTLIAVGAG+D+L
Sbjct: 121 VNKGSILVGKSLRQLKLPSKIGVRIIAIKRGNRYIYNPPSNEIIREGDTLIAVGAGIDKL 180
Query: 181 RELAGEEEEE 190
RELA EE EE
Sbjct: 181 RELAKEESEE 190
>pir||G69053 conserved hypothetical protein MTH1402 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622513|gb|AAB85879.1| (AE000902) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 198
Score = 164 bits (411), Expect = 6e-40
Identities = 82/185 (44%), Positives = 130/185 (69%), Gaps = 2/185 (1%)
Query: 5 EEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAAKK 64
+ +++ LIEMKN+S LM+DLA S++++NS + AEEV LE K++ L Y++KK +L AA+
Sbjct: 3 KSVKDILIEMKNLSELMVDLAYSALLFNSRDAAEEVIKLENKVNRLNYEIKKESLLAARS 62
Query: 65 IDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVKKG 124
+++ E + +++E+ E I++SA +IAD+VL+ ++PHP+ + +M + DE I RV +++G
Sbjct: 63 VEDAEELTALLEVGEAAESIANSAKDIADLVLKGIKPHPVFKMVMEESDEIIVRVTIEEG 122
Query: 125 SILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG--AGVDRLRE 182
S L GKSL L L ++ G+R+IAI+RG +IY P + V+ E DTLIA G AG + L
Sbjct: 123 SELAGKSLGDLLLATRTGMRVIAIRRGESWIYGPDRNTVLAEKDTLIAKGNEAGAELLFA 182
Query: 183 LAGEE 187
LA E
Sbjct: 183 LAKNE 187
>pir||E75211 probable potassium channel PAB2207 - Pyrococcus abyssi (strain
Orsay) >gi|5457649|emb|CAB49140.1| (AJ248283) POTASSIUM
CHANNEL, PUTATIVE [Pyrococcus abyssi]
Length = 205
Score = 141 bits (351), Expect = 6e-33
Identities = 71/184 (38%), Positives = 123/184 (66%), Gaps = 2/184 (1%)
Query: 3 ELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAA 62
E + ++ IEMK+ LM+DLA +S+++ +EIAEEV LEE++D L Y++ + AA
Sbjct: 10 EPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAA 69
Query: 63 KKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVK 122
+ + E E ++++I+MAN E IS++A ++A +VL +E HP+I++ + + +E IGR+ V
Sbjct: 70 RNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVS 129
Query: 123 KGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG--AGVDRL 180
S+++G++L +L L + GV IIA++RG ++I+ P S I+ GD LI G ++ L
Sbjct: 130 PDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHL 189
Query: 181 RELA 184
+E+A
Sbjct: 190 KEIA 193
>pir||E71247 hypothetical protein PH0236 - Pyrococcus horikoshii
>gi|3256625|dbj|BAA29308.1| (AP000001) 205aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 205
Score = 140 bits (349), Expect = 1e-32
Identities = 70/184 (38%), Positives = 125/184 (67%), Gaps = 2/184 (1%)
Query: 3 ELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAA 62
E + ++ IEMK+ LM+DLA +S+++ +EIAEEV LEE++D L Y++ ++ AA
Sbjct: 10 EPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAA 69
Query: 63 KKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVK 122
+ + E E +++++++AN E IS++A ++A +VL VE HP+I++ + + +E IG+++V
Sbjct: 70 RNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKETILEGEEIIGKIQVY 129
Query: 123 KGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG--AGVDRL 180
S+++GK+L +L L + GV IIA++RG ++I+ P + I+ GD LI G +D L
Sbjct: 130 PESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGRGTRTSIDHL 189
Query: 181 RELA 184
+E+A
Sbjct: 190 KEIA 193
>gi|11499779 potassium channel, putative [Archaeoglobus fulgidus]
>gi|7483920|pir||E69524 potassium channel homolog -
Archaeoglobus fulgidus >gi|2648332|gb|AAB89059.1|
(AE000954) potassium channel, putative [Archaeoglobus
fulgidus]
Length = 395
Score = 125 bits (311), Expect = 3e-28
Identities = 61/185 (32%), Positives = 131/185 (69%), Gaps = 4/185 (2%)
Query: 7 IRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAAKKID 66
+++ L+E+K+ + LM+DLA S+++YN+E+IAEEV LE ++ +L +++ +++ AA++++
Sbjct: 5 VKDLLVEIKDTTELMVDLAYSAILYNNEDIAEEVLELEGRVLDLLKQIRVVSILAARRVE 64
Query: 67 EPESMLSVIEMANINEQISDSAYEIADIVLRDVE-PHPIIRKIMHDVDEEIGRVKVKKGS 125
E E + S++++AN ++IS +A +I+ +VLR++ +++ +++ +E + +++V + S
Sbjct: 65 EAEKVSSILQIANAGQKISSAAADISSLVLRNIRLSDEMVKLMLYHSEETVVKLEVPENS 124
Query: 126 ILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG--AGVDRLRE- 182
+ GK+L +++L ++ G+R+IAIKRG +I++P ++ +GD L A G A + R E
Sbjct: 125 EIAGKTLGEVRLHTRTGMRVIAIKRGFSWIFNPDRDTMVYKGDLLFAKGDPAALPRFYEV 184
Query: 183 LAGEE 187
+AG++
Sbjct: 185 VAGKQ 189
Score = 118 bits (292), Expect = 5e-26
Identities = 63/176 (35%), Positives = 113/176 (63%), Gaps = 2/176 (1%)
Query: 1 MRELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALE 60
+ EL+ + LIE+KN+S L +DLA SS++Y ++EIA EV LEE +D ++++K L+
Sbjct: 201 IEELDRAVDLLIEVKNLSELSVDLAYSSLIYGNDEIALEVVYLEEVIDNTKFEIEKSVLK 260
Query: 61 AAKKIDEPESM--LSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGR 118
++ ++ + M ++++E+A +E I+D+A +IA ++L +E I ++ M + DE +
Sbjct: 261 CSRHFNDEQLMPLMAIVEIAYCSELIADAARDIAQVLLDKMEIPAIFKEAMRETDEVLTL 320
Query: 119 VKVKKGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG 174
+ V + S L GK+L + ++ S G+ ++AIKR N++I P ++ I GD LIA G
Sbjct: 321 ITVSEESPLNGKTLGEARVESNTGMHVVAIKRKNEWITKPTANTRIFSGDVLIAKG 376
>gb|AAG20247.1| (AE005100) potassium channel homolog; PchB [Halobacterium sp.
NRC-1]
Length = 418
Score = 108 bits (267), Expect = 5e-23
Identities = 64/195 (32%), Positives = 110/195 (55%), Gaps = 23/195 (11%)
Query: 14 MKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAAKKIDEPESMLS 73
MKN+S L +DLA +V+++ + +AEEV LE ++D L + + L AA I +P S+
Sbjct: 223 MKNMSELAVDLAYGAVLFDDDGLAEEVVELEAEVDALKSRFEAWTLRAATDIADPVSLRG 282
Query: 74 VIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVKKGSILIGKSLR 133
++++A E ISD+A EI++ VLR ++ H ++++ + DE + RV V G L G +L
Sbjct: 283 LMQIATATEVISDAAVEISEGVLRGLDTHIVVQEAVEASDEVVVRVPVGAGGELPGTTLG 342
Query: 134 QLKLPSKIGVRIIAIKRG---------------------NKYIYDPQSSEVIQEGDTLIA 172
++ ++ G+RIIA++RG + ++ +P ++ GD L+A
Sbjct: 343 DQRVKTRTGMRIIAVRRGATPDTGDVAAAGSRDGHRSPEDAWVIEPGPETTVRAGDVLLA 402
Query: 173 VG--AGVDRLRELAG 185
G +G +LRELAG
Sbjct: 403 KGTRSGAQKLRELAG 417
Score = 88.2 bits (215), Expect = 6e-17
Identities = 52/181 (28%), Positives = 103/181 (56%), Gaps = 6/181 (3%)
Query: 8 RNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAAKKIDE 67
++ L+E+K+ + L++DL+ S+V++ S+ +A+EV LE++MD L + + L AA+ +
Sbjct: 13 KDLLVELKDTAELLVDLSFSAVLHGSDNVADEVLRLEKRMDVLQLRARMTLLLAARSPAD 72
Query: 68 PESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVKKGSIL 127
ES+ V+ + E++SD+A +IA +V DV ++ + D E + R ++ S
Sbjct: 73 AESLAPVLGVVAATEKMSDAAGDIAKVVREDVGLPDAMQGALPDAAESLVRGRLVADSRY 132
Query: 128 IGKSLRQLKLPSKIGVRIIAIKRGN----KYIYDPQSSEVIQEGDTLIAVG--AGVDRLR 181
++L + L + GVR+IA++RG+ ++ +P ++ D L+ G GV+ +
Sbjct: 133 ADRTLGDVDLETNTGVRVIAVRRGDGDAGDWLPNPGPETTLRPADVLLLRGPTTGVEGVY 192
Query: 182 E 182
E
Sbjct: 193 E 193
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.134 0.345
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62755918
Number of Sequences: 2977
Number of extensions: 2446702
Number of successful extensions: 7501
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7490
Number of HSP's gapped (non-prelim): 9
length of query: 191
length of database: 189,106,746
effective HSP length: 62
effective length of query: 129
effective length of database: 152,000,552
effective search space: 19608071208
effective search space used: 19608071208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)