BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2404 (polC) DE:DNA POLYMERASE II LARGE SUBUNIT (EC 2.7.7.7)
(1455 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75199 DNA-directed DNA polymerase (EC 2.7.7.7) II large ch... 2947 0.0
pir||G71232 hypothetical protein PH0121 - Pyrococcus horikoshii ... 2603 0.0
pir||T43934 DNA-directed DNA polymerase (EC 2.7.7.7) chain 2 [va... 1730 0.0
gb|AAG20443.1| (AE005116) DNA polymerase type II large chain; Po... 990 0.0
pir||D64503 hypothetical protein MJ1630 - Methanococcus jannasch... 894 0.0
pir||H69071 conserved hypothetical protein MTH1536 - Methanobact... 838 0.0
gi|11499311 conserved hypothetical protein [Archaeoglobus fulgid... 806 0.0
emb|CAC11185.1| (AL445063) DNA polymerase II (DP1), subunit 2 re... 634 e-180
>pir||E75199 DNA-directed DNA polymerase (EC 2.7.7.7) II large chain PAB2404 -
Pyrococcus abyssi (strain Orsay)
>gi|5457553|emb|CAB49044.1| (AJ248283) DNA POLYMERASE II
LARGE SUBUNIT (EC 2.7.7.7) [Pyrococcus abyssi]
Length = 1455
Score = 2947 bits (7556), Expect = 0.0
Identities = 1455/1455 (100%), Positives = 1455/1455 (100%)
Query: 1 MELPKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGV 60
MELPKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGV
Sbjct: 1 MELPKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGV 60
Query: 61 AKRIRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIE 120
AKRIRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIE
Sbjct: 61 AKRIRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIE 120
Query: 121 GIANVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH 180
GIANVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH
Sbjct: 121 GIANVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH 180
Query: 181 IERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQ 240
IERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQ
Sbjct: 181 IERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQ 240
Query: 241 LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAEST 300
LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAEST
Sbjct: 241 LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAEST 300
Query: 301 LEETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRAS 360
LEETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRAS
Sbjct: 301 LEETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRAS 360
Query: 361 GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDY 420
GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDY
Sbjct: 361 GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDY 420
Query: 421 NLALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLE 480
NLALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLE
Sbjct: 421 NLALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLE 480
Query: 481 PFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYW 540
PFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYW
Sbjct: 481 PFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYW 540
Query: 541 NSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRD 600
NSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRD
Sbjct: 541 NSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRD 600
Query: 601 GNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPE 660
GNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPE
Sbjct: 601 GNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPE 660
Query: 661 KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPN 720
KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPN
Sbjct: 661 KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPN 720
Query: 721 CGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKV 780
CGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKV
Sbjct: 721 CGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKV 780
Query: 781 YGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV 840
YGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV
Sbjct: 781 YGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV 840
Query: 841 SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGL 900
SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGL
Sbjct: 841 SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGL 900
Query: 901 PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT 960
PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT
Sbjct: 901 PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT 960
Query: 961 RILVQIDGVPQKITLRELYELFEDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIED 1020
RILVQIDGVPQKITLRELYELFEDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIED
Sbjct: 961 RILVQIDGVPQKITLRELYELFEDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIED 1020
Query: 1021 VIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE 1080
VIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE
Sbjct: 1021 VIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE 1080
Query: 1081 QSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRANDDFVFSLNAKKYHNVIINENIVTHQC 1140
QSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRANDDFVFSLNAKKYHNVIINENIVTHQC
Sbjct: 1081 QSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRANDDFVFSLNAKKYHNVIINENIVTHQC 1140
Query: 1141 DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL 1200
DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL
Sbjct: 1141 DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL 1200
Query: 1201 EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME 1260
EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME
Sbjct: 1201 EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME 1260
Query: 1261 EKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL 1320
EKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL
Sbjct: 1261 EKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL 1320
Query: 1321 NGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENVFP 1380
NGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENVFP
Sbjct: 1321 NGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENVFP 1380
Query: 1381 ETQLTLIVNPNDICQRLVMARTGEVNKSGLLENLSNGSKKTEKAEKAEKPRKKSDEKPKK 1440
ETQLTLIVNPNDICQRLVMARTGEVNKSGLLENLSNGSKKTEKAEKAEKPRKKSDEKPKK
Sbjct: 1381 ETQLTLIVNPNDICQRLVMARTGEVNKSGLLENLSNGSKKTEKAEKAEKPRKKSDEKPKK 1440
Query: 1441 KRVISLEEFFSRKSK 1455
KRVISLEEFFSRKSK
Sbjct: 1441 KRVISLEEFFSRKSK 1455
>pir||G71232 hypothetical protein PH0121 - Pyrococcus horikoshii
>gi|3256507|dbj|BAA29190.1| (AP000001) 1434aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 1434
Score = 2603 bits (6673), Expect = 0.0
Identities = 1270/1453 (87%), Positives = 1352/1453 (92%), Gaps = 22/1453 (1%)
Query: 1 MELPKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGV 60
MELPKEMEEYF MLQREIDKAYEIAKKARAQGKDPSLDVEIPQA+DMAGRVESLVGPPGV
Sbjct: 4 MELPKEMEEYFSMLQREIDKAYEIAKKARAQGKDPSLDVEIPQASDMAGRVESLVGPPGV 63
Query: 61 AKRIRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIE 120
A+RIRELVKEYGKEIAALKIVDEII+GKFGDLGS+EKYAEQAVRTALAILTEG+VSAPIE
Sbjct: 64 AERIRELVKEYGKEIAALKIVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGVVSAPIE 123
Query: 121 GIANVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH 180
GIA+VKIKRNTW+DNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH
Sbjct: 124 GIASVKIKRNTWSDNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH 183
Query: 181 IERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQ 240
IERMVEEVDLYHR V+RLQYHPSPEEVRLAMRNIPIEITGEATD+VEVSHRD+PGVETNQ
Sbjct: 184 IERMVEEVDLYHRTVSRLQYHPSPEEVRLAMRNIPIEITGEATDEVEVSHRDIPGVETNQ 243
Query: 241 LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAEST 300
LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGE E +EE AEST
Sbjct: 244 LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGE---EIEEEGSAEST 300
Query: 301 LEETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRAS 360
+EETKVEVDMGFYYSLYQKFK EIAP+DKYAKE+IGGRPLFSDPS+ GGFRLRYGRSR S
Sbjct: 301 VEETKVEVDMGFYYSLYQKFKSEIAPNDKYAKEIIGGRPLFSDPSRNGGFRLRYGRSRVS 360
Query: 361 GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDY 420
GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSV++VDDY
Sbjct: 361 GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVVKVDDY 420
Query: 421 NLALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLE 480
LALK+R++VEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEF KAL EIYEV L+
Sbjct: 421 KLALKIRDEVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFTKALNEIYEVELK 480
Query: 481 PFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYW 540
PF N E +EEA+DYLE+D EFLKE+L+DPLR KPPVELAIHFSE+LGIPLHPYYTLYW
Sbjct: 481 PFEVNSSEDLEEAADYLEVDIEFLKELLKDPLRTKPPVELAIHFSEILGIPLHPYYTLYW 540
Query: 541 NSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRD 600
NSV+P+ VEKLWR+LK +A I+W NFRGIKFA++IVI EKL DSKR LELLGLPH V
Sbjct: 541 NSVKPEQVEKLWRVLKEHAHIDWDNFRGIKFARRIVIPLEKLRDSKRALELLGLPHKVEG 600
Query: 601 GNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPE 660
NVIVDYPWAAALLTPLGNL WEF AKPL+ TIDIINENNEIKLRDRGISWIGARMGRPE
Sbjct: 601 KNVIVDYPWAAALLTPLGNLEWEFRAKPLHTTIDIINENNEIKLRDRGISWIGARMGRPE 660
Query: 661 KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPN 720
KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIA FKCPKCGHVGPEH+CPN
Sbjct: 661 KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIALFKCPKCGHVGPEHICPN 720
Query: 721 CGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKV 780
CGTRKEL+WVCPRCNAEYPESQA GYNYTCPKCNVKL+PYAKRKI+PSELL RAM+NVKV
Sbjct: 721 CGTRKELIWVCPRCNAEYPESQASGYNYTCPKCNVKLKPYAKRKIKPSELLKRAMDNVKV 780
Query: 781 YGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV 840
YG+DKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV
Sbjct: 781 YGIDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV 840
Query: 841 SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGL 900
SVEKLRELGYTHDFEG PLVSEDQIVELKPQDIILSKEAG+YLLKVAKFVDDLLEKFYGL
Sbjct: 841 SVEKLRELGYTHDFEGNPLVSEDQIVELKPQDIILSKEAGKYLLKVAKFVDDLLEKFYGL 900
Query: 901 PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT 960
PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT
Sbjct: 901 PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT 960
Query: 961 RILVQIDGVPQKITLRELYELFEDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIED 1020
RILVQI+G PQ++TL+ELYELF++E YE+MVYVRKKPK +IKVYS + E GKVVLTDIE+
Sbjct: 961 RILVQINGTPQRVTLKELYELFDEEHYESMVYVRKKPKVDIKVYSFNPEEGKVVLTDIEE 1020
Query: 1021 VIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE 1080
VIKAPATDHLIRFELE G SFETTVDHPVLVYENG+F+EKRAFEV+EG+ +++ + +E
Sbjct: 1021 VIKAPATDHLIRFELELGSSFETTVDHPVLVYENGKFVEKRAFEVREGNIIIIIDESTLE 1080
Query: 1081 QSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRANDDFVFSLNAKKYHNVIINENIVTHQC 1140
+ +K I+++ +DFVFSLNAKKYH VIINENIVTHQC
Sbjct: 1081 PLK-------------------VAVKKIEFIEPPEDFVFSLNAKKYHTVIINENIVTHQC 1121
Query: 1141 DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL 1200
DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL
Sbjct: 1122 DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL 1181
Query: 1201 EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME 1260
EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME
Sbjct: 1182 EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME 1241
Query: 1261 EKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL 1320
EKV+RQL+VA+RIRAVDEH VAE ILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL
Sbjct: 1242 EKVKRQLDVARRIRAVDEHKVAETILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL 1301
Query: 1321 NGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENVFP 1380
+GKCP+CGGKIVLTVSKGAIEKYLGTAKMLVTEY VKNYTRQRICLTERDIDSLFE VFP
Sbjct: 1302 DGKCPICGGKIVLTVSKGAIEKYLGTAKMLVTEYKVKNYTRQRICLTERDIDSLFETVFP 1361
Query: 1381 ETQLTLIVNPNDICQRLVMARTGEVNKSGLLENLSNGSKKTEKAEKAEKPRKKSDEKPKK 1440
ETQLTL+VNPNDICQR++M RTG KSGLLEN +NG K +K E +K RKK EK KK
Sbjct: 1362 ETQLTLLVNPNDICQRIIMERTGGSKKSGLLENFANGYNKGKKEEMPKKQRKKEQEKSKK 1421
Query: 1441 KRVISLEEFFSRK 1453
++VISL++FFSRK
Sbjct: 1422 RKVISLDDFFSRK 1434
>pir||T43934 DNA-directed DNA polymerase (EC 2.7.7.7) chain 2 [validated] -
Pyrococcus furiosus >gi|2967437|dbj|BAA25164.1| (D84670)
DNA polymerase II subunit 2 [Pyrococcus furiosus]
Length = 1263
Score = 1730 bits (4431), Expect = 0.0
Identities = 838/969 (86%), Positives = 900/969 (92%), Gaps = 2/969 (0%)
Query: 1 MELPKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGV 60
MELPKE+EEYFEMLQREIDKAYEIAKKAR+QGKDPS DVEIPQATDMAGRVESLVGPPGV
Sbjct: 1 MELPKEIEEYFEMLQREIDKAYEIAKKARSQGKDPSTDVEIPQATDMAGRVESLVGPPGV 60
Query: 61 AKRIRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIE 120
A+RIREL+KEY KEI ALKIVDEIIEGKFGD GS+EKYAEQAVRTALAILTEGIVSAP+E
Sbjct: 61 AQRIRELLKEYDKEIVALKIVDEIIEGKFGDFGSKEKYAEQAVRTALAILTEGIVSAPLE 120
Query: 121 GIANVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH 180
GIA+VKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPS KH
Sbjct: 121 GIADVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSGKH 180
Query: 181 IERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQ 240
IERMVEEVDLYHRAV+RLQYHPSP+EVRLAMRNIPIEITGEATDDVEVSHRDV GVETNQ
Sbjct: 181 IERMVEEVDLYHRAVSRLQYHPSPDEVRLAMRNIPIEITGEATDDVEVSHRDVEGVETNQ 240
Query: 241 LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAEST 300
LRGGAILVLAEGVLQKAKKLVKYIDKMGI+GWEWLKEFVEAKEKGE EE ES AE +
Sbjct: 241 LRGGAILVLAEGVLQKAKKLVKYIDKMGIDGWEWLKEFVEAKEKGEEIEES--ESKAEES 298
Query: 301 LEETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRAS 360
ET+VEV+ GFYY LY+KF+ EIAPS+KYAKE+IGGRPLF+ PS+ GGFRLRYGRSR S
Sbjct: 299 KVETRVEVEKGFYYKLYEKFRAEIAPSEKYAKEIIGGRPLFAGPSENGGFRLRYGRSRVS 358
Query: 361 GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDY 420
GFATW INPATM+LVDEFLAIGTQ+KTERPGKGAVVTP TT EGPIVKLKDGSV+RVDDY
Sbjct: 359 GFATWSINPATMVLVDEFLAIGTQMKTERPGKGAVVTPATTAEGPIVKLKDGSVVRVDDY 418
Query: 421 NLALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLE 480
NLALK+R++VEEILYLGDA+IAFGDFVENNQTLLPANY EEWWI EFVKA+ E YEV L
Sbjct: 419 NLALKIRDEVEEILYLGDAIIAFGDFVENNQTLLPANYVEEWWIQEFVKAVNEAYEVELR 478
Query: 481 PFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYW 540
PF EN ES+EEA++YLE+DPEFL +ML DPLRVKPPVELAIHFSE+L IPLHPYYTLYW
Sbjct: 479 PFEENPRESVEEAAEYLEVDPEFLAKMLYDPLRVKPPVELAIHFSEILEIPLHPYYTLYW 538
Query: 541 NSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRD 600
N+V PKDVE+LW +LK+ A IEW FRGIKFAKKI IS + LG KRTLELLGLPHTVR+
Sbjct: 539 NTVNPKDVERLWGVLKDKATIEWGTFRGIKFAKKIEISLDDLGSLKRTLELLGLPHTVRE 598
Query: 601 GNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPE 660
G V+VDYPW+AALLTPLGNL WEF AKP Y IDIINENN+IKLRDRGISWIGARMGRPE
Sbjct: 599 GIVVVDYPWSAALLTPLGNLEWEFKAKPFYTVIDIINENNQIKLRDRGISWIGARMGRPE 658
Query: 661 KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPN 720
KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGK+AEVEIAFFKCPKCGHVGPE LCP
Sbjct: 659 KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKIAEVEIAFFKCPKCGHVGPETLCPE 718
Query: 721 CGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKV 780
CG RKEL+W CP+C AEY SQAEGY+Y+CPKCNVKL+P+ KRKI+PSELLNRAMENVKV
Sbjct: 719 CGIRKELIWTCPKCGAEYTNSQAEGYSYSCPKCNVKLKPFTKRKIKPSELLNRAMENVKV 778
Query: 781 YGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV 840
YGVDKLKGVMGMTSGWK+ EPLEKGLLRAKN+VYVFKDGTIRFDATDAPITHFRPREIGV
Sbjct: 779 YGVDKLKGVMGMTSGWKIAEPLEKGLLRAKNEVYVFKDGTIRFDATDAPITHFRPREIGV 838
Query: 841 SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGL 900
SVEKLRELGYTHDFEGKPLVSEDQIVELKPQD+ILSKEAG+YLL+VA+FVDDLLEKFYGL
Sbjct: 839 SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDVILSKEAGKYLLRVARFVDDLLEKFYGL 898
Query: 901 PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT 960
PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNC +
Sbjct: 899 PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCDGDED 958
Query: 961 RILVQIDGV 969
+++ +D +
Sbjct: 959 SVMLLLDAL 967
Score = 538 bits (1370), Expect = e-151
Identities = 261/314 (83%), Positives = 286/314 (90%), Gaps = 3/314 (0%)
Query: 1140 CDGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYP 1199
CDGDED+VMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMD+VRYYP
Sbjct: 953 CDGDEDSVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDVVRYYP 1012
Query: 1200 LEFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDM 1259
LEFYEATYELKSPKELV VIE VEDRLGKPEMYYG+KFTHDTDDIALGPKMSLYKQLGDM
Sbjct: 1013 LEFYEATYELKSPKELVRVIEGVEDRLGKPEMYYGIKFTHDTDDIALGPKMSLYKQLGDM 1072
Query: 1260 EEKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPP 1319
EEKV+RQL +A+RIRAVD+H VAE ILNSHLIPDLRGNLRSFTRQEFRCVKCNTK+RRPP
Sbjct: 1073 EEKVKRQLTLAERIRAVDQHYVAETILNSHLIPDLRGNLRSFTRQEFRCVKCNTKYRRPP 1132
Query: 1320 LNGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENVF 1379
L+GKCPVCGGKIVLTVSKGAIEKYLGTAKMLV YNVK YTRQRICLTE+DIDSLFE +F
Sbjct: 1133 LDGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVANYNVKPYTRQRICLTEKDIDSLFEYLF 1192
Query: 1380 PETQLTLIVNPNDICQRLVMARTGEVNKSGLLENLSNGSKKTEKAEKAEKPRKKSDEKPK 1439
PE QLTLIV+PNDIC +++ RTGE + GLLEN ++ +K EK E KK+ EKPK
Sbjct: 1193 PEAQLTLIVDPNDICMKMIKERTGETVQGGLLENFNSSGNNGKKIEKKE---KKAKEKPK 1249
Query: 1440 KKRVISLEEFFSRK 1453
KK+VISL++FFS++
Sbjct: 1250 KKKVISLDDFFSKR 1263
>gb|AAG20443.1| (AE005116) DNA polymerase type II large chain; PolA2 [Halobacterium
sp. NRC-1]
Length = 1370
Score = 990 bits (2532), Expect = 0.0
Identities = 564/1406 (40%), Positives = 819/1406 (58%), Gaps = 89/1406 (6%)
Query: 8 EEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGVAKRIREL 67
E YFE L+ +D A+E+A+ AR +G+DP+ +VEIP A DMA RVE+++G GVA+R+R+L
Sbjct: 6 ETYFETLETGLDDAFEVAEAARERGEDPTPNVEIPVAKDMADRVENILGIDGVAERVRDL 65
Query: 68 VKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIEGIANVKI 127
E +E AAL++V + ++G+ GD + E AVRTA+A+LTEG+V+APIEGI V++
Sbjct: 66 DGEMSREEAALELVADFVDGRVGDYDTDAGKIEGAVRTAVALLTEGVVAAPIEGIDRVEV 125
Query: 128 KRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKHIERMVEE 187
N D ++Y+A+YYAGPIRS+GGTAQALSVLV DY R LG+D FKP + IER EE
Sbjct: 126 NDND--DGTQYVAVYYAGPIRSAGGTAQALSVLVADYARAMLGIDAFKPRDDEIERYAEE 183
Query: 188 VDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVS-HRDVPGVETNQLRGGAI 246
VDLY + T LQY P E + P+ + GEAT + EV RD+ ++TN RGG
Sbjct: 184 VDLYD-SETGLQYSPKDAETTFITEHCPVMLDGEATGNEEVDGFRDLERIDTNSPRGGMC 242
Query: 247 LVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAESTLEETKV 306
LVLAEG+ KA K+ +Y + W WL++ ++ + +E ++ ++S
Sbjct: 243 LVLAEGIALKAPKIQRYTRNLDEVAWPWLQDLIDGTIGADDADEDTPDAGSDSDA----- 297
Query: 307 EVDMGFYYSLYQKFKE--EIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRASGFAT 364
D G S +E APSDK+ +++I GRP+F PSK GGFRLRYGR+R G AT
Sbjct: 298 -TDEGDAPSASTDAEEPPRAAPSDKFLRDLIAGRPVFGHPSKNGGFRLRYGRARNHGNAT 356
Query: 365 WGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDYNLAL 424
G++PATM L+D+FLA GTQ+KTERPGK A + PV +IEGP VKL +G V ++D AL
Sbjct: 357 AGVHPATMHLLDDFLATGTQIKTERPGKAAGIVPVDSIEGPTVKLANGDVRHINDPADAL 416
Query: 425 KVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLEPFTE 484
VR V EIL +G+ ++ +G+FVENN L PA+Y EWWI + A ++ + P+ +
Sbjct: 417 DVRNGVAEILDVGEYLVNYGEFVENNHELAPASYAPEWWIQDLDAAGADVQALRDSPYVD 476
Query: 485 NEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYWNSVE 544
P + A+ ++ PLHP YT W+ ++
Sbjct: 477 ----------------------------LTAPTADQAMAWATDYDAPLHPAYTYLWHDID 508
Query: 545 PKDVEKLWRLLKN-YAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRDGNV 603
+ L + + + + + RG+ +E TLE L + H D +
Sbjct: 509 VEQFRALADAVADAHTDASDDDDRGVLVLDHTTTVRE-------TLEALLVTHHQGDDTI 561
Query: 604 IVD--YPWAAAL-LTPLGNLNWEFMAKPLYATIDIINENNEI---KLRDRGISWIGARMG 657
VD P A +L +T + WE +++ + + NE+ +++R + IG RMG
Sbjct: 562 RVDDWLPLARSLGVTESLDREWETLSEAAAEWPNAVRAVNEVAPFSVQERAPTRIGNRMG 621
Query: 658 RPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAE--------EGKVAEVEIAFFKCPKC 709
RPEK++ R + P V LFPIG AGGS RD+ AA G++ V + CP C
Sbjct: 622 RPEKSESRDLSPAVHTLFPIGDAGGSQRDVADAARYAPDMSDTPGEIP-VRVGDRVCPSC 680
Query: 710 GHVGPEHLCPNCGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSE 769
E CP+CG + + C C A + E CP C L + I ++
Sbjct: 681 DEHTYESRCPDCGDWTDPHYECRDCGAV--ATPDESGRVECPNCGRDLDNVTTQVIDIND 738
Query: 770 LLNRAMENV--KVYGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATD 827
+ A+ V + D+LKGV G+ S K PEP+ KG+LRAK+DV FKDGT+R+D TD
Sbjct: 739 EYHGALRAVGERENAFDQLKGVKGLLSAEKTPEPMAKGVLRAKHDVTAFKDGTVRYDMTD 798
Query: 828 APITHFRPREIGVSVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVA 887
P+T P E+ V+ + RELGY D G PL +DQ+VEL+ QD++LS A ++LK A
Sbjct: 799 LPVTAVTPAELDVTAGQFRELGYNQDIHGDPLEHDDQLVELRVQDVVLSDGAADHMLKTA 858
Query: 888 KFVDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYF 947
FVDDLL ++YGL FY+ + +DL+G LV G+APHTSA +VGR+ GF A VGYAHPYF
Sbjct: 859 DFVDDLLTQYYGLDAFYDLDDRDDLVGELVFGMAPHTSAAVVGRVAGFTSASVGYAHPYF 918
Query: 948 HAAKRRNCFPGDTRILVQI-------DGVPQKITLRELYELFEDERYENMVYVRKKPKRE 1000
HAAKRRNCF +T + + D + + R + +++ + +V +
Sbjct: 919 HAAKRRNCFHPETNVWFRDESGEWHHDPIETLVEARLDPDTADEDDFGALVQALDG---D 975
Query: 1001 IKVYSIDLETGKVVLTDIEDVIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEK 1060
+ V S+ E G+ L +E V K PA DHL+ E + GR T DH + +
Sbjct: 976 VFVPSVT-EDGEETLQRVEAVSKHPAPDHLLAVETKRGRELTVTPDHSMRRWTGDGIERV 1034
Query: 1061 RAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLL---------EIKNIKYV 1111
A E+ GD L + ++ ++ ++E+L + E+ +++ V
Sbjct: 1035 DARELTAGD-ALPAPTQVPGDGETATSELRSESLDGTHPQRRFGDGGSVRTDEVVSVEPV 1093
Query: 1112 RANDDFVFSLNAKKYHNVIINENIVTHQCDGDEDAVMLLLDALLNFSRYYLPEKRGGKMD 1171
R++ D +SL + + ++ N + T QCDGDED VMLL+D L+NFS+ YLP+KRGG+MD
Sbjct: 1094 RSSVDHTYSLTVAETNTLVAN-GLFTGQCDGDEDCVMLLMDGLINFSKSYLPDKRGGRMD 1152
Query: 1172 APLVITTRLDPREVDSEVHNMDIVRYYPLEFYEATYELKSPKELVGVIERVEDRLGKPEM 1231
APLV+++R+DP E+D E HN+DI R YP EFYEAT EL P+++ +I E +G E
Sbjct: 1153 APLVMSSRIDPAEIDDEAHNIDIDREYPREFYEATRELADPEDVADLITLAESTVGTDEE 1212
Query: 1232 YYGLKFTHDTDDIALGPKMSLYKQLGDMEEKVRRQLEVAKRIRAVDEHGVAEKILNSHLI 1291
Y G TH T +I LGP +S YK LG M +K+ QLE+A+++R+V E VAE+++ H +
Sbjct: 1213 YTGFGHTHATSNIHLGPSLSAYKTLGSMMDKMDAQLELARKLRSVAETDVAERVIEYHFL 1272
Query: 1292 PDLRGNLRSFTRQEFRCVKCNTKFRRPPLNGKCPVCGGKIVLTVSKGAIEKYLGTAKMLV 1351
PDL GNLR+F+RQE RC+ C K+RR PL+G C CGG++ LTV +G++ KY+ TA +
Sbjct: 1273 PDLIGNLRAFSRQETRCLDCGEKYRRMPLSGDCRECGGRVNLTVHEGSVNKYMDTAMRVA 1332
Query: 1352 TEYNVKNYTRQRICLTERDIDSLFEN 1377
TEY+ + YT+QR+ + +R ++S+FE+
Sbjct: 1333 TEYDCREYTKQRLEIMDRRLESVFED 1358
>pir||D64503 hypothetical protein MJ1630 - Methanococcus jannaschii
>gi|1592340|gb|AAB99651.1| (U67603) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 1139
Score = 894 bits (2284), Expect = 0.0
Identities = 495/972 (50%), Positives = 643/972 (65%), Gaps = 91/972 (9%)
Query: 5 KEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGVAKRI 64
+ M++YFE + E+ K Y IA++ R +G DP+ +VEIP A DMA RVE LVGP GVA+RI
Sbjct: 11 ENMKKYFENIVDEVKKIYRIAEECRKKGFDPTDEVEIPLAADMADRVEGLVGPKGVAERI 70
Query: 65 RELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIEGIAN 124
RELVKE GKE AAL+I EI+EGKFG+ +EK AEQAVRTALA+LTEGIV+AP+EGIA+
Sbjct: 71 RELVKELGKEPAALEIAKEIVEGKFGNF-DKEKKAEQAVRTALAVLTEGIVAAPLEGIAD 129
Query: 125 VKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKHIERM 184
VKIK+N D +EYLA+YYAGPIRS+GGTAQALSVLVGD+VR+ +GLDR+KP+E IER
Sbjct: 130 VKIKKNP--DGTEYLAIYYAGPIRSAGGTAQALSVLVGDFVRKAMGLDRYKPTEDEIERY 187
Query: 185 VEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVS-HRDVPGVETNQLRG 243
VEEV+LY V QY+P+ +E+R A+RNIPIEITGEATDDVEVS HRD+P VETNQLRG
Sbjct: 188 VEEVELYQSEVGSFQYNPTADEIRTAIRNIPIEITGEATDDVEVSGHRDLPRVETNQLRG 247
Query: 244 GAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAESTLEE 303
GA+LVL EGVL KA K+++++DK+GIEGW+WLK+ + KE+ KEE K+E + + ++E
Sbjct: 248 GALLVLVEGVLLKAPKILRHVDKLGIEGWDWLKDLMSKKEE---KEEEKDEKVDDEEIDE 304
Query: 304 TKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRASGFA 363
+ E+ G++ + +I + K+ EVI GRP+F+ PSK GGFRLRYGRSR +GFA
Sbjct: 305 EEEEIS-GYWRDV------KIEANKKFISEVIAGRPVFAHPSKVGGFRLRYGRSRNTGFA 357
Query: 364 TWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDYNLA 423
T G +PA M LVDEF+A+GTQLKTERPGK V PV +IE PIVKLK+G V+RVD A
Sbjct: 358 TQGFHPALMYLVDEFMAVGTQLKTERPGKATCVVPVDSIEPPIVKLKNGDVIRVDTIEKA 417
Query: 424 LKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLEPFT 483
+ VR VEEIL+LGD ++ +GDF+ENN LLP+ +CEEW+
Sbjct: 418 MDVRNRVEEILFLGDVLVNYGDFLENNHPLLPSCWCEEWY-------------------- 457
Query: 484 ENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYWNSV 543
E I A++ +E D +F+K P E A+ F+ PLHP +T +W+ V
Sbjct: 458 ----EKILIANN-IEYDKDFIKN---------PKPEEAVKFALETKTPLHPRFTYHWHDV 503
Query: 544 EPKDVEKLWRLLKNYAEIEWSNFRGIK-FAKKIVISQEKLGDSKRTLELLGLPHTVRDGN 602
+D+ L L E + G K + + I ++K +KR LEL+G H VR+
Sbjct: 504 SKEDIILLRNWLLKGKE---DSLEGKKVWIVDLEIEEDK--KAKRILELIGCCHLVRNKK 558
Query: 603 VIVD--YPWAAALLTPLGNL-----NWEFMAKPLYATIDIINENNEIKLRDRGISWIGAR 655
VI++ YP +L + N N E + + ++ +IN ++R ++GAR
Sbjct: 559 VIIEEYYPLLYSLGFDVENKKDLVENIEKILESAKNSMHLINLLAPFEVRRNTYVYVGAR 618
Query: 656 MGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPE 715
MGRPEKA RKMKPPV LFPIG AGG R I KA EE +V++++ +CP CG +
Sbjct: 619 MGRPEKAAPRKMKPPVNGLFPIGNAGGQVRLINKAVEENNTDDVDVSYTRCPNCGKISLY 678
Query: 716 HLCPNCGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAM 775
+CP CGT+ EL N+ K +K YA A+
Sbjct: 679 RVCPFCGTKVEL------------------DNFGRIKAPLKDYWYA------------AL 708
Query: 776 ENVKVYGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRP 835
+ + + +K + GMTS K+ EPLEK +LRA N+VYVFKDGT RFD TD P+THF+P
Sbjct: 709 KRLGINKPGDVKCIKGMTSKQKIVEPLEKAILRAINEVYVFKDGTTRFDCTDVPVTHFKP 768
Query: 836 REIGVSVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLE 895
EI V+VEKLRELGY D G LV +Q+VELKPQD+I+ + Y +KVA F+DDLLE
Sbjct: 769 NEINVTVEKLRELGYDKDIYGNELVDGEQVVELKPQDVIIPESCAEYFVKVANFIDDLLE 828
Query: 896 KFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNC 955
KFY + RFYN +K EDLIGHLVIG+APHTSAG+VGRIIG+ A VGYAHPYFHAAKRRNC
Sbjct: 829 KFYKVERFYNVKKKEDLIGHLVIGMAPHTSAGMVGRIIGYTKANVGYAHPYFHAAKRRNC 888
Query: 956 FPGDTRILVQID 967
+ + +D
Sbjct: 889 DGDEDSFFLLLD 900
Score = 307 bits (777), Expect = 8e-82
Identities = 146/238 (61%), Positives = 180/238 (75%), Gaps = 1/238 (0%)
Query: 1140 CDGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYP 1199
CDGDED+ LLLDA LNFS+ +LP+KRGG+MDAPLV+TT LDP+EVD EVHNMD + YP
Sbjct: 888 CDGDEDSFFLLLDAFLNFSKKFLPDKRGGQMDAPLVLTTILDPKEVDGEVHNMDTMWSYP 947
Query: 1200 LEFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDM 1259
LEFYE T E+ SPKE+ +E VEDRLGKPE Y G+ +TH+T I LGPK+ YK LG M
Sbjct: 948 LEFYEKTLEMPSPKEVKEFMETVEDRLGKPEQYEGIGYTHETSRIDLGPKVCAYKTLGSM 1007
Query: 1260 EEKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPP 1319
EK QL VAK+IRA DE VAEK++ SH IPDL GNLR+F+RQ RC KC K+RR P
Sbjct: 1008 LEKTTSQLSVAKKIRATDERDVAEKVIQSHFIPDLIGNLRAFSRQAVRC-KCGAKYRRIP 1066
Query: 1320 LNGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFEN 1377
L GKCP CG ++LTVSKGA+EKY+ A+ + EYNV +Y +QR+ + + I+S+FEN
Sbjct: 1067 LKGKCPKCGSNLILTVSKGAVEKYMDVAEKMAEEYNVNDYIKQRLKIIKEGINSIFEN 1124
>pir||H69071 conserved hypothetical protein MTH1536 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622655|gb|AAB86010.1| (AE000913) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 1092
Score = 838 bits (2140), Expect = 0.0
Identities = 453/968 (46%), Positives = 608/968 (62%), Gaps = 115/968 (11%)
Query: 7 MEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGVAKRIRE 66
M +YF L+RE ++ YEIA+KARA+G D S EIP A D+A RVE LVGP G+A+RI+E
Sbjct: 1 MMDYFNELERETERLYEIARKARARGLDVSTTPEIPLAKDLAERVEGLVGPEGIARRIKE 60
Query: 67 LVKEYGKEIAALKIVDEIIEGKF--GDLGSREKYAEQAVRTALAILTEGIVSAPIEGIAN 124
L + G+E A +I EI D REK A+QA+RTALAILTEG+V+AP+EGIA
Sbjct: 61 LEGDRGREEVAFQIAAEIASQAVPDDDPEEREKLADQALRTALAILTEGVVAAPLEGIAR 120
Query: 125 VKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKHIERM 184
V+IK N D S YLA+Y+AGPIRS+GGTA ALSVL+ DY+R +GLDR+KP E+ IER
Sbjct: 121 VRIKENF--DKSRYLAVYFAGPIRSAGGTAAALSVLIADYIRLAVGLDRYKPVEREIERY 178
Query: 185 VEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQLRGG 244
VEEV+LY VT LQY P P+EVRLA IP+E+TGE TD VEVSHRD+ VETN +RGG
Sbjct: 179 VEEVELYESEVTNLQYSPKPDEVRLAASKIPVEVTGEPTDKVEVSHRDLERVETNNIRGG 238
Query: 245 AILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAESTLEET 304
A+L + EGV+QKA K++KY ++ +EGW+WL++F +A +KGE +E
Sbjct: 239 ALLAMVEGVIQKAPKVLKYAKQLKLEGWDWLEKFSKAPKKGEGEE--------------- 283
Query: 305 KVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRASGFAT 364
K + KY +++IGGRP+ + PS+ G FRLRYGR+R +G A
Sbjct: 284 ----------------KVVVKADSKYVEDIIGGRPVLAYPSEKGAFRLRYGRARNTGLAA 327
Query: 365 WGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDYNLAL 424
G++PATM L+ +FLA+GTQ+K ERPGKG V PV TI+GP+VKL++G V+R++D A
Sbjct: 328 MGVHPATMELL-QFLAVGTQMKIERPGKGNCVVPVDTIDGPVVKLRNGDVIRIEDAETAS 386
Query: 425 KVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLEPFTE 484
+VR +VEEIL+LGD ++AFG+F+ NN L+PA +CEEWWI
Sbjct: 387 RVRSEVEEILFLGDMLVAFGEFLRNNHVLMPAGWCEEWWI-------------------- 426
Query: 485 NEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYWNSVE 544
++I + Y DP L ++ A SE +PLHP YT +++ V
Sbjct: 427 ---QTILSSPKYPGDDPLNLSYYRTRWNELEVSAGDAFRISEEYDVPLHPRYTYFYHDVT 483
Query: 545 PKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRDGNVI 604
+++ L EW N ++ ++V+ +L KR LE+LG+PH V+D V+
Sbjct: 484 VRELNML---------REWLNTSQLE--DELVL---ELRPEKRILEILGVPHRVKDSRVV 529
Query: 605 VDYPWAAALLTPLGNLNWEFMAKPL---YATIDIINENNEIKLRDRGISWIGARMGRPEK 661
+ + A AL+ L KPL T++ +N + +++ + ++IG R+GRPEK
Sbjct: 530 IGHDDAHALIKTL--------RKPLEDSSDTVEALNRVSPVRIMKKAPTYIGTRVGRPEK 581
Query: 662 AKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPNC 721
KERKM+P VLFPIG GGS R+I AA++G + VEI CP C + +CP+C
Sbjct: 582 TKERKMRPAPHVLFPIGKYGGSRRNIPDAAKKGSIT-VEIGRATCPSCRVSSMQSICPSC 640
Query: 722 GTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKVY 781
G+R + KR I + LL RA ENV V
Sbjct: 641 GSR------------------------------TVIGEPGKRNINLAALLKRAAENVSVR 670
Query: 782 GVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGVS 841
+D++KGV GM S K PEPLEKG+LRAKNDVY FKD TIR D+TD P+THF PRE+GVS
Sbjct: 671 KLDEIKGVEGMISAEKFPEPLEKGILRAKNDVYTFKDATIRHDSTDLPLTHFTPREVGVS 730
Query: 842 VEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGLP 901
VE+LRELGYT D G L EDQI+EL+ QD+++S++ YL++VA FVDDLLE+FY L
Sbjct: 731 VERLRELGYTRDCYGDELEDEDQILELRVQDVVISEDCADYLVRVANFVDDLLERFYDLE 790
Query: 902 RFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDTR 961
RFYN + EDL+GHL+ GLAPHTSA ++GRIIGF A YAHPYFH+AKRRNC +
Sbjct: 791 RFYNVKTREDLVGHLIAGLAPHTSAAVLGRIIGFTGASACYAHPYFHSAKRRNCDSDEDS 850
Query: 962 ILVQIDGV 969
+++ +D +
Sbjct: 851 VMLLLDAL 858
Score = 273 bits (692), Expect = 7e-72
Identities = 131/238 (55%), Positives = 174/238 (73%), Gaps = 1/238 (0%)
Query: 1140 CDGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYP 1199
CD DED+VMLLLDALLNFS+ YLP RGG MDAPLV++TR+DP E+D E HN+D + P
Sbjct: 844 CDSDEDSVMLLLDALLNFSKSYLPSSRGGSMDAPLVLSTRIDPEEIDDESHNIDTMDMIP 903
Query: 1200 LEFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDM 1259
LE YE +++ P E++ VI+ VE RLGKPE Y GL F+H+T I GPK+ LYK L M
Sbjct: 904 LEVYERSFDHPRPSEVLDVIDNVEKRLGKPEQYTGLMFSHNTSRIDEGPKVCLYKLLPTM 963
Query: 1260 EEKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPP 1319
+EKV Q+ +A++IRAVD+ V E +L SH +PD+ GN+R+F+RQ+ RC KCN K+RR P
Sbjct: 964 KEKVESQITLAEKIRAVDQRSVVEGVLMSHFLPDMMGNIRAFSRQKVRCTKCNRKYRRIP 1023
Query: 1320 LNGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFEN 1377
L+G+C CGG +VLTVSKG++ KYL +K L + Y + Y QRI + E ++SLFE+
Sbjct: 1024 LSGECR-CGGNLVLTVSKGSVIKYLEISKELASRYPIDPYLMQRIEILEYGVNSLFES 1080
>gi|11499311 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483160|pir||A69465 conserved hypothetical protein
AF1722 - Archaeoglobus fulgidus
>gi|2648832|gb|AAB89529.1| (AE000984) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 1143
Score = 806 bits (2059), Expect = 0.0
Identities = 458/981 (46%), Positives = 603/981 (60%), Gaps = 112/981 (11%)
Query: 5 KEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGVAKRI 64
+E+ Y E L E+D+ Y IA+ AR +G DP L VEIP A +MA RVE L+ G+AKRI
Sbjct: 24 EEIRRYHESLMVELDRIYRIAEAARKKGLDPELSVEIPIAKNMAERVEKLMNLQGLAKRI 83
Query: 65 RELVKE-YGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIEGIA 123
EL + +E+ K+ DEI+EGKFG++ +E+ ++AVRTA+AI+TEG+V+APIEGIA
Sbjct: 84 MELEEGGLSRELICFKVADEIVEGKFGEM-PKEEAIDKAVRTAVAIMTEGVVAAPIEGIA 142
Query: 124 NVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKHIER 183
V+I D +L +YYAGPIRS+GGTAQ +SVLV DYVRRK + R+ P+E+ I R
Sbjct: 143 RVRI------DRENFLRVYYAGPIRSAGGTAQVISVLVADYVRRKAEIGRYVPTEEEILR 196
Query: 184 MVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVS-HRDVPGVETNQLR 242
EE+ LY + V LQY PS EE+RL + N PI I GE T+ EVS +R++P VETN++R
Sbjct: 197 YCEEIPLYKK-VANLQYLPSDEEIRLIVSNCPICIDGEPTESAEVSGYRNLPRVETNRVR 255
Query: 243 GGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAESTLE 302
GG LV+AEG+ KA KL K +D++GIEGWEWL ++ +EE
Sbjct: 256 GGMALVIAEGIALKAPKLKKMVDEVGIEGWEWLDALIKGGGDSGSEEE------------ 303
Query: 303 ETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRASGF 362
K I P DKY +++ GRP+ S PS+ GGFRLRYGR+R SGF
Sbjct: 304 ------------------KAVIKPKDKYLSDIVAGRPVLSHPSRKGGFRLRYGRARNSGF 345
Query: 363 ATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDYNL 422
AT G+NPATM L+ EF+A+GTQLK ERPGK V PV+TIEGP V+LK+G V++++ +
Sbjct: 346 ATVGVNPATMYLL-EFVAVGTQLKVERPGKAGGVVPVSTIEGPTVRLKNGDVVKINTLSE 404
Query: 423 ALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLEPF 482
A ++ +V IL LG+ +I +GDF+ENN L+PA+Y EWWI
Sbjct: 405 AKALKGEVAAILDLGEILINYGDFLENNHPLIPASYTYEWWI------------------ 446
Query: 483 TENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYWNS 542
E E DY +I E A+ + +PLHP YT W+
Sbjct: 447 --QEAEKAGLRGDYRKISE-----------------EEALKLCDEFHVPLHPDYTYLWHD 487
Query: 543 VEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRDGN 602
+ +D L + + +IE K K +++ K LE L L H VR+
Sbjct: 488 ISVEDYRYLRNFVSDNGKIEG------KHGKSVLLLPYD-SRVKEILEALLLEHKVRESF 540
Query: 603 VIVDYPWAA-----ALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMG 657
++++ W A L L ++ E K + ++I+N + IK+R + +S IGARMG
Sbjct: 541 IVIE-TWRAFIRCLGLDEKLSKVS-EVSGKDV---LEIVNGISGIKVRPKALSRIGARMG 595
Query: 658 RPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKA--------AEEGKVAEVEIAFFKCPKC 709
RPEKAKERKM PP +LFP+G+AGG++RDIK A A++G++ EVEIA KCP+C
Sbjct: 596 RPEKAKERKMSPPPHILFPVGMAGGNTRDIKNAINYTKSYNAKKGEI-EVEIAIRKCPQC 654
Query: 710 GHVGPEHLCPNCGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSE 769
G C CG E L+ CP C + S C C + Y KRK+ E
Sbjct: 655 GKETFWLKCDVCGELTEQLYYCPSCRMKNTSS-------VCESCGRECEGYMKRKVDLRE 707
Query: 770 LLNRAMENVKVY-GVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDA 828
L A+ N+ Y D +KGV GMTS K+PE LEKG+LR K+ V+VFKDGT RFDATD
Sbjct: 708 LYEEAIANLGEYDSFDTIKGVKGMTSKTKIPERLEKGILRVKHGVFVFKDGTARFDATDL 767
Query: 829 PITHFRPREIGVSVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAK 888
PITHF+P EIGVSVEKLRELGY D++G L +E+QIVELKPQD+IL K YLL+VA
Sbjct: 768 PITHFKPAEIGVSVEKLRELGYERDYKGAELKNENQIVELKPQDVILPKSGAEYLLRVAN 827
Query: 889 FVDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFH 948
F+DDLL KFY + FYNA+ +EDLIGHLVIGLAPHTSAG++GRIIGF D L GYAHPYFH
Sbjct: 828 FIDDLLVKFYKMEPFYNAKSVEDLIGHLVIGLAPHTSAGVLGRIIGFSDVLAGYAHPYFH 887
Query: 949 AAKRRNCFPGDTRILVQIDGV 969
AAKRRNC + ++ +DG+
Sbjct: 888 AAKRRNCDGDEDCFMLLLDGL 908
Score = 303 bits (767), Expect = 1e-80
Identities = 144/238 (60%), Positives = 180/238 (75%)
Query: 1140 CDGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYP 1199
CDGDED MLLLD LLNFSR +LP+KRGG+MDAPLV+T +DPREVD EVHNMDIV YP
Sbjct: 894 CDGDEDCFMLLLDGLLNFSRKFLPDKRGGQMDAPLVLTAIVDPREVDKEVHNMDIVERYP 953
Query: 1200 LEFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDM 1259
LEFYEAT SPKE+ +E+V+DRL + GL FTHDT++IA G K S YK L M
Sbjct: 954 LEFYEATMRFASPKEMEDYVEKVKDRLKDESRFCGLFFTHDTENIAAGVKESAYKSLKTM 1013
Query: 1260 EEKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPP 1319
++KV RQ+E+A+ I AVDEH VAE+++N H +PD+ GNLR+F+RQEFRC +CNTK+RR P
Sbjct: 1014 QDKVYRQMELARMIVAVDEHDVAERVINVHFLPDIIGNLRAFSRQEFRCTRCNTKYRRIP 1073
Query: 1320 LNGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFEN 1377
L GKC CG K+ LTV +I KYL +K L +NV +YT+QR+ L E++I S+FEN
Sbjct: 1074 LVGKCLKCGNKLTLTVHSSSIMKYLELSKFLCENFNVSSYTKQRLMLLEQEIKSMFEN 1131
>emb|CAC11185.1| (AL445063) DNA polymerase II (DP1), subunit 2 related protein
[Thermoplasma acidophilum]
Length = 1087
Score = 634 bits (1617), Expect = e-180
Identities = 381/981 (38%), Positives = 559/981 (56%), Gaps = 161/981 (16%)
Query: 4 PKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGVAKR 63
P ++E Y + + ++ +A+ +A++ARA+G D S VEIP A+DMA R+E+L+G G+A+
Sbjct: 7 PFDLEGYRKYITEKVREAFNVAQEARAKGLDVSDHVEIPLASDMAERIEALIGIKGIAQE 66
Query: 64 IRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIEGIA 123
IR+L +E +L++ I F D +R++ ++A+R LAILTEGI+ AP+EGIA
Sbjct: 67 IRDLSSRMSREEVSLEM-SRRIAAMFKD--NRKEALDKAIRVGLAILTEGILVAPLEGIA 123
Query: 124 NVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKHIER 183
+V I +N D SEY+ + YAGPIR +GGTAQALSVL+GD VRR+LG+ RF+P+E IER
Sbjct: 124 DVYIGKNQ--DGSEYVGISYAGPIRGAGGTAQALSVLIGDVVRRELGISRFQPTEDEIER 181
Query: 184 MVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVS-HRDVPGVETNQLR 242
+EE++ Y R + LQY P+P+E++L +RN PI I GE +++ EVS HRD+ ++TN++R
Sbjct: 182 YIEEIESYDR-IKHLQYMPTPDEIKLVVRNSPICIDGEGSEEEEVSGHRDMERIKTNRIR 240
Query: 243 GGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAESTLE 302
GG LVL EG++QKA+K++KY M ++ W +L K EGK
Sbjct: 241 GGMCLVLCEGLVQKARKILKYTSSMHLDDWNFLANL-------GGKAEGKSSK------- 286
Query: 303 ETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRASGF 362
SDK+ K+++ GRP+FS PS+PGGFRLRYGRSR SG
Sbjct: 287 -----------------------KSDKFLKDIVAGRPVFSHPSRPGGFRLRYGRSRVSGL 323
Query: 363 ATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDYNL 422
A +NPATM ++ +F+AIG+Q+K E PGK A VTP TI+GP V LK+G ++++D
Sbjct: 324 AAASLNPATMYIMGKFIAIGSQIKVELPGKAAAVTPCDTIDGPTVLLKNGDHVKINDIEK 383
Query: 423 ALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLEPF 482
A +V +DV EI G+ +IA+GDF+ENN L ++ EWW
Sbjct: 384 AREVYDDVVEITDAGEILIAYGDFLENNYPLPTPSFTVEWW------------------- 424
Query: 483 TENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYWNS 542
E+ + + + +ID +F A+ S GIPLHPYY YW+
Sbjct: 425 ----EQYLPDGVNAKDID-QF----------------SAVEISRKYGIPLHPYYDYYWHD 463
Query: 543 VEPKDVEKL------WRLLKNYAEIEWSNF-----RGIKFAKKIVISQEKLGDSKRTLEL 591
+ +D+E L W + ++ + + F GI+F + S + L L
Sbjct: 464 ISFEDLEFLVKNAEQWSITEDGMRVPYPAFDVFIRLGIEFRR----SGDYLIIRDYYPLL 519
Query: 592 LGLPHTVRDGNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISW 651
+ L + VR+G ++ N+ ++ K + ++ +N + + ++ R +
Sbjct: 520 ISLGYDVRNGKIV--------------NVK-KYERKG--SVMETVNYLSGLIIKPRAPTR 562
Query: 652 IGARMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVA-EVEIAFFKCPKCG 710
+G+R+GRPEKA +RKMKP V LFP+ G + R I A + + + + E+ F++C CG
Sbjct: 563 VGSRLGRPEKAGDRKMKPMVHSLFPVESYGEARRSIIGANKNSEGSYKAEVFFYRCNSCG 622
Query: 711 HVGPEHLCPNCGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSEL 770
P +CP CG C+ P + G I +
Sbjct: 623 FETPTPVCPRCG---------GHCS---PLGEKTG------------------SIDLESI 652
Query: 771 LNRAMENVKVYGVDKL---KGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATD 827
LNRA E++ +D L KGV + S K+ EP+EKG+LRA +D+ V KDGT RFD +D
Sbjct: 653 LNRA-ESILGISLDSLKEFKGVKKLMSKEKVAEPIEKGILRAVHDISVNKDGTCRFDMSD 711
Query: 828 APITHFRPREIGVSVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVA 887
PITHFR REIG+ L +LGY + EL PQD+I+ ++A +YL V+
Sbjct: 712 IPITHFRYREIGIDERTLADLGY----------EVRDVNELFPQDVIIPRKAAKYLFNVS 761
Query: 888 KFVDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYF 947
+F+DDLL K+Y +P FY+ E EDLIGHL+IGLAPHTS G+VGRIIGF D YAHP+F
Sbjct: 762 RFIDDLLVKYYNMPPFYSLESEEDLIGHLIIGLAPHTSGGVVGRIIGFSDVNAFYAHPFF 821
Query: 948 HAAKRRNCFPGDTRILVQIDG 968
HAAKRRNC + +++ +DG
Sbjct: 822 HAAKRRNCDGDEDSVMLLMDG 842
Score = 223 bits (562), Expect = 1e-56
Identities = 110/245 (44%), Positives = 153/245 (61%), Gaps = 5/245 (2%)
Query: 1140 CDGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYP 1199
CDGDED+VMLL+D LNFS YLP RGG MDAPLV++ ++P E+D E N+D + YP
Sbjct: 829 CDGDEDSVMLLMDGFLNFSARYLPSTRGGLMDAPLVLSVLINPDEIDKEALNVDTLSRYP 888
Query: 1200 LEFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDM 1259
+ FYEA SP E+ + ++ R+ K Y G +T DT DI G +S YK LG M
Sbjct: 889 VLFYEAAERHASPAEIEDTMMTMKVRIKKTGTYMGSSYTMDTSDINSGVLVSSYKTLGTM 948
Query: 1260 EEKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPP 1319
+EK+ QL +AK++RAVD VA +++++H +PD+ GN R F QEFRC KCN K+RR P
Sbjct: 949 DEKINEQLGLAKKLRAVDADDVAARVISTHFLPDMYGNFRKFFSQEFRCTKCNAKYRRIP 1008
Query: 1320 LNGKCPVCGG-KIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENV 1378
L+G+C CG + LT+ KG++ KYL + Y + +Y + RI R I +
Sbjct: 1009 LSGRCQKCGSTSLTLTIHKGSVVKYLNETLKIAENYRLPDYLKARIDNLARTI----KET 1064
Query: 1379 FPETQ 1383
FP+T+
Sbjct: 1065 FPDTE 1069
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563619231
Number of Sequences: 2977
Number of extensions: 25702077
Number of successful extensions: 85077
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84997
Number of HSP's gapped (non-prelim): 26
length of query: 1455
length of database: 189,106,746
effective HSP length: 60
effective length of query: 1395
effective length of database: 153,197,526
effective search space: 213710548770
effective search space used: 213710548770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 171 (71.0 bits)