BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2407 (PAB2407) DE:Hypothetical protein
         (301 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75153 hypothetical protein PAB2407 - Pyrococcus abyssi (st...   598  e-170
pir||C71194 hypothetical protein PH1827 - Pyrococcus horikoshii ...   484  e-136
pir||D69176 conserved hypothetical protein MTH577 - Methanobacte...   147  1e-34
sp|Q58379|Y969_METJA HYPOTHETICAL PROTEIN MJ0969 >gi|2128606|pir...   114  2e-24
gi|11499236 conserved hypothetical protein [Archaeoglobus fulgid...   105  8e-22
gb|AAG18848.1| (AE004988) Vng0251c [Halobacterium sp. NRC-1]          102  7e-21

>pir||B75153 hypothetical protein PAB2407 - Pyrococcus abyssi (strain Orsay)
           >gi|5457815|emb|CAB49305.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 301
           
 Score =  598 bits (1526), Expect = e-170
 Identities = 301/301 (100%), Positives = 301/301 (100%)

Query: 1   MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
           MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE
Sbjct: 1   MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60

Query: 61  PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR 120
           PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR
Sbjct: 61  PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR 120

Query: 121 TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL 180
           TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL
Sbjct: 121 TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL 180

Query: 181 GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR 240
           GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR
Sbjct: 181 GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR 240

Query: 241 EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRWFGE 300
           EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRWFGE
Sbjct: 241 EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRWFGE 300

Query: 301 S 301
           S
Sbjct: 301 S 301


>pir||C71194 hypothetical protein PH1827 - Pyrococcus horikoshii
           >gi|3258263|dbj|BAA30946.1| (AP000007) 301aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 301
           
 Score =  484 bits (1232), Expect = e-136
 Identities = 228/297 (76%), Positives = 274/297 (91%)

Query: 1   MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
           ML+RAFVPAHITAFFVPIIR+DPQ SGSLGAG+NLS+GTNVFISFEESLE+HVHVA NGE
Sbjct: 1   MLIRAFVPAHITAFFVPIIREDPQNSGSLGAGINLSKGTNVFISFEESLEKHVHVAFNGE 60

Query: 61  PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR 120
           PVK+EDA++T+HVI+K+LP++Y+GEVEVWQYFDYPTGHG+GNS GGALGTAL L+YKF  
Sbjct: 61  PVKKEDARITYHVIEKILPEDYIGEVEVWQYFDYPTGHGYGNSAGGALGTALGLSYKFGG 120

Query: 121 TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL 180
           TLLSA+++AHEAEV+++GGLGDIVAQLAGG+E+RIKEGGPGVA+VDN++VEGFKVLTIS+
Sbjct: 121 TLLSASRIAHEAEVIHKGGLGDIVAQLAGGIEIRIKEGGPGVAVVDNILVEGFKVLTISI 180

Query: 181 GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR 240
           G+L TR+VLDS+VVEKIK+ G+++LENLL +P  ETLM+EAR FA  TGLM ++L EIA 
Sbjct: 181 GKLETRKVLDSEVVEKIKIAGKQALENLLRDPRPETLMKEARSFAVETGLMSEDLIEIAN 240

Query: 241 EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRW 297
           E+D+ ISLPSSMIMLGKGIFA+VR EEVE+VKE+VKDL + YDI+ IYWGKP VGRW
Sbjct: 241 EIDREISLPSSMIMLGKGIFALVREEEVEKVKEIVKDLDLQYDISYIYWGKPVVGRW 297


>pir||D69176 conserved hypothetical protein MTH577 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621655|gb|AAB85083.1| (AE000840) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 292
           
 Score =  147 bits (368), Expect = 1e-34
 Identities = 100/266 (37%), Positives = 140/266 (52%), Gaps = 9/266 (3%)

Query: 1   MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
           M  R FVPAHIT FF  +++ DP  SGS GAGV L RG    +    S +    V +NG 
Sbjct: 8   MKPRVFVPAHITGFFEVVMQRDPLRSGSRGAGVVLDRGVKTGVKLRGS-DDTTKVRVNG- 65

Query: 61  PVKREDAKVTFHVIDKMLPQEYVGE-VEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFR 119
             +R+D  V+   ++ +       E V +    + P G GFG S   ALG+ L +A +  
Sbjct: 66  --RRDDDGVSIRAVEILRELTGFSEGVSIHHEVEVPIGCGFGTSAACALGSVLAIASELE 123

Query: 120 R--TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLT 177
              T   A +VAH AEV    GLGD++A++ GG+ +R +EG PG   VD +I +G  V+T
Sbjct: 124 LPITFNMAGEVAHRAEVELGTGLGDLIAEVTGGMVIRTREGPPGYGRVDRIIQDGLHVIT 183

Query: 178 ISLGRLSTREVLDSDV-VEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELK 236
            +LG L T  V+  D  V  I   G   +  LL  P     M  +R FAE  GL+  EL+
Sbjct: 184 RTLGELDTASVIHDDAHVRAINRMGGGMIGRLLKRPAPARFMELSREFAEGAGLIPRELR 243

Query: 237 EIAREVDKVISLPSSMIMLGKGIFAM 262
           E   E+ +  +L +SM MLG  +FA+
Sbjct: 244 EPLEELSEG-TLGASMAMLGNTVFAL 268


>sp|Q58379|Y969_METJA HYPOTHETICAL PROTEIN MJ0969 >gi|2128606|pir||A64421 hypothetical
           protein MJ0969 - Methanococcus jannaschii
           >gi|1591632|gb|AAB98974.1| (U67540) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 270
           
 Score =  114 bits (282), Expect = 2e-24
 Identities = 86/281 (30%), Positives = 142/281 (49%), Gaps = 29/281 (10%)

Query: 6   FVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGEPVKRE 65
           F P HIT FFV     +   +GS+GAG+ + RG NV     E  E +  +  N +     
Sbjct: 2   FAPGHITGFFVICKSSNKLKTGSIGAGITIDRGVNV-----ELKEGNGSIFYNNK----- 51

Query: 66  DAKVTFHVIDKMLPQE----YVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRRT 121
             KV    ++K++       Y  + ++    D+P G G G SGG     AL LA K    
Sbjct: 52  --KVNICAVEKVIEHYKKFGYNDDYDIIFSSDFPLGSGLGMSGG----CALILAKKLNEM 105

Query: 122 LL---SAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTI 178
           L    + A++AH +EV    GLGD++AQ   G  +R   G P    V+ ++V+    + I
Sbjct: 106 LNLNENYAEIAHISEVECGTGLGDVIAQYVKGFVIRKTPGFP--INVEKIVVDDDYYIII 163

Query: 179 SL-GRLSTREVLDSDV-VEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELK 236
            + G+  T+E++ +D+ ++KI   G++ L  LL NPTLE  +  +  FA  TGL+++++ 
Sbjct: 164 EIFGKKETKEIITNDIWIKKINEYGERCLNELLKNPTLENFVNLSYEFAVNTGLINEKIL 223

Query: 237 EIAREVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKD 277
            I    D   ++ +S  MLG  +F + + E +E    ++K+
Sbjct: 224 SICE--DLKFTVGASQSMLGNTLFCISKKETLEDALSILKN 262


>gi|11499236 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483154|pir||E69455 conserved hypothetical protein
           AF1646 - Archaeoglobus fulgidus
           >gi|2648904|gb|AAB89596.1| (AE000989) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 261
           
 Score =  105 bits (259), Expect = 8e-22
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 36/280 (12%)

Query: 6   FVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGEPVKRE 65
           F PA IT  F P +  +P+ SGS+G G  + RG     S + ++        NGE     
Sbjct: 3   FAPASITCIFSPHVDSNPKNSGSIGVGFTIERGLQASPSRKTTI--------NGE----- 49

Query: 66  DAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALC--LAYKFRRTLL 123
             +  F  +D +L +  +  VE+      P G GFG SG  AL TA+   L Y      +
Sbjct: 50  --EWNFPTLDDVLEKVGLEGVEIKA--SLPFGCGFGMSGAAALATAVLGNLGY------I 99

Query: 124 SAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISLGRL 183
            AA +AH AEV N  GLGD+V Q  GGV VR     P  A ++       +   + +G +
Sbjct: 100 EAADIAHVAEVENFTGLGDVVTQTFGGVVVRKSAACPSRAELERFFWNA-EFDFVVMGEI 158

Query: 184 STREVLDSDVVEK-IKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAREV 242
           ST++V+  ++  + I   G++  +  L  PTLE L   +  FA  TGL+  EL   A E 
Sbjct: 159 STKDVIGDELKRRRIGEAGKRWTKEFLKKPTLENLFHCSNGFARETGLL--ELVGDAVEA 216

Query: 243 DKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPY 282
            +     ++M+MLGK +FA+          E +K+ G P+
Sbjct: 217 VESAGGKAAMVMLGKTVFAV-------NGFEALKEFGEPF 249


>gb|AAG18848.1| (AE004988) Vng0251c [Halobacterium sp. NRC-1]
           Length = 279
           
 Score =  102 bits (251), Expect = 7e-21
 Identities = 84/263 (31%), Positives = 125/263 (46%), Gaps = 21/263 (7%)

Query: 5   AFVPAHITAFFVPII--RDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGEPV 62
           AF P H+T FF       +    SGS GAGV LS G  V ++  E+      V LNG P 
Sbjct: 9   AFAPGHVTGFFSVDTGATEAAVASGSRGAGVALSAGVTVTVTRAEN----TGVVLNGTPT 64

Query: 63  KREDAKVTFHVIDKM-LPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRRT 121
           +    +    V+D + +      E  +      P G GFG SG  AL  AL     F   
Sbjct: 65  EIASVR---GVLDALGVTARVTAETPL------PLGAGFGVSGATALAAALAANEVFGCG 115

Query: 122 LLS--AAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTIS 179
                  +VAH A+     GLGD+VAQ  GG+ VR++ G P    +D +   G ++  +S
Sbjct: 116 CSENELVQVAHVADAEAGTGLGDVVAQARGGLPVRVEPGAPPHGSLDGVPASG-RIEYVS 174

Query: 180 LGRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIA 239
            G LST +V+  +  + +   G  +L  L A+PT+   +  +RRFA   GL+D  + +  
Sbjct: 175 FGGLSTSDVIGGE-TDALSAAGADALAALRADPTVAEFVAASRRFARAAGLVDAAVADAI 233

Query: 240 REVDKVISLPSSMIMLGKGIFAM 262
             V +     ++M MLG+ +FA+
Sbjct: 234 AAV-QAAGGEAAMAMLGRTVFAL 255


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.399 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112034091
Number of Sequences: 2977
Number of extensions: 4800105
Number of successful extensions: 15114
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15098
Number of HSP's gapped (non-prelim): 7
length of query: 301
length of database: 189,106,746
effective HSP length: 56
effective length of query: 245
effective length of database: 155,591,474
effective search space: 38119911130
effective search space used: 38119911130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)