BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2407 (PAB2407) DE:Hypothetical protein
(301 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75153 hypothetical protein PAB2407 - Pyrococcus abyssi (st... 598 e-170
pir||C71194 hypothetical protein PH1827 - Pyrococcus horikoshii ... 484 e-136
pir||D69176 conserved hypothetical protein MTH577 - Methanobacte... 147 1e-34
sp|Q58379|Y969_METJA HYPOTHETICAL PROTEIN MJ0969 >gi|2128606|pir... 114 2e-24
gi|11499236 conserved hypothetical protein [Archaeoglobus fulgid... 105 8e-22
gb|AAG18848.1| (AE004988) Vng0251c [Halobacterium sp. NRC-1] 102 7e-21
>pir||B75153 hypothetical protein PAB2407 - Pyrococcus abyssi (strain Orsay)
>gi|5457815|emb|CAB49305.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 301
Score = 598 bits (1526), Expect = e-170
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE
Sbjct: 1 MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
Query: 61 PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR 120
PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR
Sbjct: 61 PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR 120
Query: 121 TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL 180
TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL
Sbjct: 121 TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL 180
Query: 181 GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR 240
GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR
Sbjct: 181 GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR 240
Query: 241 EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRWFGE 300
EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRWFGE
Sbjct: 241 EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRWFGE 300
Query: 301 S 301
S
Sbjct: 301 S 301
>pir||C71194 hypothetical protein PH1827 - Pyrococcus horikoshii
>gi|3258263|dbj|BAA30946.1| (AP000007) 301aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 301
Score = 484 bits (1232), Expect = e-136
Identities = 228/297 (76%), Positives = 274/297 (91%)
Query: 1 MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
ML+RAFVPAHITAFFVPIIR+DPQ SGSLGAG+NLS+GTNVFISFEESLE+HVHVA NGE
Sbjct: 1 MLIRAFVPAHITAFFVPIIREDPQNSGSLGAGINLSKGTNVFISFEESLEKHVHVAFNGE 60
Query: 61 PVKREDAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRR 120
PVK+EDA++T+HVI+K+LP++Y+GEVEVWQYFDYPTGHG+GNS GGALGTAL L+YKF
Sbjct: 61 PVKKEDARITYHVIEKILPEDYIGEVEVWQYFDYPTGHGYGNSAGGALGTALGLSYKFGG 120
Query: 121 TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISL 180
TLLSA+++AHEAEV+++GGLGDIVAQLAGG+E+RIKEGGPGVA+VDN++VEGFKVLTIS+
Sbjct: 121 TLLSASRIAHEAEVIHKGGLGDIVAQLAGGIEIRIKEGGPGVAVVDNILVEGFKVLTISI 180
Query: 181 GRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAR 240
G+L TR+VLDS+VVEKIK+ G+++LENLL +P ETLM+EAR FA TGLM ++L EIA
Sbjct: 181 GKLETRKVLDSEVVEKIKIAGKQALENLLRDPRPETLMKEARSFAVETGLMSEDLIEIAN 240
Query: 241 EVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPYDIAEIYWGKPTVGRW 297
E+D+ ISLPSSMIMLGKGIFA+VR EEVE+VKE+VKDL + YDI+ IYWGKP VGRW
Sbjct: 241 EIDREISLPSSMIMLGKGIFALVREEEVEKVKEIVKDLDLQYDISYIYWGKPVVGRW 297
>pir||D69176 conserved hypothetical protein MTH577 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621655|gb|AAB85083.1| (AE000840) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 292
Score = 147 bits (368), Expect = 1e-34
Identities = 100/266 (37%), Positives = 140/266 (52%), Gaps = 9/266 (3%)
Query: 1 MLVRAFVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGE 60
M R FVPAHIT FF +++ DP SGS GAGV L RG + S + V +NG
Sbjct: 8 MKPRVFVPAHITGFFEVVMQRDPLRSGSRGAGVVLDRGVKTGVKLRGS-DDTTKVRVNG- 65
Query: 61 PVKREDAKVTFHVIDKMLPQEYVGE-VEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFR 119
+R+D V+ ++ + E V + + P G GFG S ALG+ L +A +
Sbjct: 66 --RRDDDGVSIRAVEILRELTGFSEGVSIHHEVEVPIGCGFGTSAACALGSVLAIASELE 123
Query: 120 R--TLLSAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLT 177
T A +VAH AEV GLGD++A++ GG+ +R +EG PG VD +I +G V+T
Sbjct: 124 LPITFNMAGEVAHRAEVELGTGLGDLIAEVTGGMVIRTREGPPGYGRVDRIIQDGLHVIT 183
Query: 178 ISLGRLSTREVLDSDV-VEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELK 236
+LG L T V+ D V I G + LL P M +R FAE GL+ EL+
Sbjct: 184 RTLGELDTASVIHDDAHVRAINRMGGGMIGRLLKRPAPARFMELSREFAEGAGLIPRELR 243
Query: 237 EIAREVDKVISLPSSMIMLGKGIFAM 262
E E+ + +L +SM MLG +FA+
Sbjct: 244 EPLEELSEG-TLGASMAMLGNTVFAL 268
>sp|Q58379|Y969_METJA HYPOTHETICAL PROTEIN MJ0969 >gi|2128606|pir||A64421 hypothetical
protein MJ0969 - Methanococcus jannaschii
>gi|1591632|gb|AAB98974.1| (U67540) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 270
Score = 114 bits (282), Expect = 2e-24
Identities = 86/281 (30%), Positives = 142/281 (49%), Gaps = 29/281 (10%)
Query: 6 FVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGEPVKRE 65
F P HIT FFV + +GS+GAG+ + RG NV E E + + N +
Sbjct: 2 FAPGHITGFFVICKSSNKLKTGSIGAGITIDRGVNV-----ELKEGNGSIFYNNK----- 51
Query: 66 DAKVTFHVIDKMLPQE----YVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRRT 121
KV ++K++ Y + ++ D+P G G G SGG AL LA K
Sbjct: 52 --KVNICAVEKVIEHYKKFGYNDDYDIIFSSDFPLGSGLGMSGG----CALILAKKLNEM 105
Query: 122 LL---SAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTI 178
L + A++AH +EV GLGD++AQ G +R G P V+ ++V+ + I
Sbjct: 106 LNLNENYAEIAHISEVECGTGLGDVIAQYVKGFVIRKTPGFP--INVEKIVVDDDYYIII 163
Query: 179 SL-GRLSTREVLDSDV-VEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELK 236
+ G+ T+E++ +D+ ++KI G++ L LL NPTLE + + FA TGL+++++
Sbjct: 164 EIFGKKETKEIITNDIWIKKINEYGERCLNELLKNPTLENFVNLSYEFAVNTGLINEKIL 223
Query: 237 EIAREVDKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKD 277
I D ++ +S MLG +F + + E +E ++K+
Sbjct: 224 SICE--DLKFTVGASQSMLGNTLFCISKKETLEDALSILKN 262
>gi|11499236 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483154|pir||E69455 conserved hypothetical protein
AF1646 - Archaeoglobus fulgidus
>gi|2648904|gb|AAB89596.1| (AE000989) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 261
Score = 105 bits (259), Expect = 8e-22
Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 36/280 (12%)
Query: 6 FVPAHITAFFVPIIRDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGEPVKRE 65
F PA IT F P + +P+ SGS+G G + RG S + ++ NGE
Sbjct: 3 FAPASITCIFSPHVDSNPKNSGSIGVGFTIERGLQASPSRKTTI--------NGE----- 49
Query: 66 DAKVTFHVIDKMLPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALC--LAYKFRRTLL 123
+ F +D +L + + VE+ P G GFG SG AL TA+ L Y +
Sbjct: 50 --EWNFPTLDDVLEKVGLEGVEIKA--SLPFGCGFGMSGAAALATAVLGNLGY------I 99
Query: 124 SAAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTISLGRL 183
AA +AH AEV N GLGD+V Q GGV VR P A ++ + + +G +
Sbjct: 100 EAADIAHVAEVENFTGLGDVVTQTFGGVVVRKSAACPSRAELERFFWNA-EFDFVVMGEI 158
Query: 184 STREVLDSDVVEK-IKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIAREV 242
ST++V+ ++ + I G++ + L PTLE L + FA TGL+ EL A E
Sbjct: 159 STKDVIGDELKRRRIGEAGKRWTKEFLKKPTLENLFHCSNGFARETGLL--ELVGDAVEA 216
Query: 243 DKVISLPSSMIMLGKGIFAMVRNEEVERVKELVKDLGVPY 282
+ ++M+MLGK +FA+ E +K+ G P+
Sbjct: 217 VESAGGKAAMVMLGKTVFAV-------NGFEALKEFGEPF 249
>gb|AAG18848.1| (AE004988) Vng0251c [Halobacterium sp. NRC-1]
Length = 279
Score = 102 bits (251), Expect = 7e-21
Identities = 84/263 (31%), Positives = 125/263 (46%), Gaps = 21/263 (7%)
Query: 5 AFVPAHITAFFVPII--RDDPQLSGSLGAGVNLSRGTNVFISFEESLERHVHVALNGEPV 62
AF P H+T FF + SGS GAGV LS G V ++ E+ V LNG P
Sbjct: 9 AFAPGHVTGFFSVDTGATEAAVASGSRGAGVALSAGVTVTVTRAEN----TGVVLNGTPT 64
Query: 63 KREDAKVTFHVIDKM-LPQEYVGEVEVWQYFDYPTGHGFGNSGGGALGTALCLAYKFRRT 121
+ + V+D + + E + P G GFG SG AL AL F
Sbjct: 65 EIASVR---GVLDALGVTARVTAETPL------PLGAGFGVSGATALAAALAANEVFGCG 115
Query: 122 LLS--AAKVAHEAEVLNRGGLGDIVAQLAGGVEVRIKEGGPGVAIVDNLIVEGFKVLTIS 179
+VAH A+ GLGD+VAQ GG+ VR++ G P +D + G ++ +S
Sbjct: 116 CSENELVQVAHVADAEAGTGLGDVVAQARGGLPVRVEPGAPPHGSLDGVPASG-RIEYVS 174
Query: 180 LGRLSTREVLDSDVVEKIKVEGQKSLENLLANPTLETLMREARRFAEVTGLMDDELKEIA 239
G LST +V+ + + + G +L L A+PT+ + +RRFA GL+D + +
Sbjct: 175 FGGLSTSDVIGGE-TDALSAAGADALAALRADPTVAEFVAASRRFARAAGLVDAAVADAI 233
Query: 240 REVDKVISLPSSMIMLGKGIFAM 262
V + ++M MLG+ +FA+
Sbjct: 234 AAV-QAAGGEAAMAMLGRTVFAL 255
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112034091
Number of Sequences: 2977
Number of extensions: 4800105
Number of successful extensions: 15114
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15098
Number of HSP's gapped (non-prelim): 7
length of query: 301
length of database: 189,106,746
effective HSP length: 56
effective length of query: 245
effective length of database: 155,591,474
effective search space: 38119911130
effective search space used: 38119911130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)