BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2408 (PAB2408) DE:Hypothetical protein
(338 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75154 hypothetical protein PAB2408 - Pyrococcus abyssi (st... 697 0.0
pir||E71195 hypothetical protein PH1836 - Pyrococcus horikoshii ... 650 0.0
gi|11499946 A. fulgidus predicted coding region AF2369 [Archaeog... 377 e-103
>pir||B75154 hypothetical protein PAB2408 - Pyrococcus abyssi (strain Orsay)
>gi|5457823|emb|CAB49313.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 338
Score = 697 bits (1780), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MDKLKLYIGLFIAIILGIAGLIVWKWGFIMLIRIILSLGFLGLTLMLGFFLALTIYAESW 60
MDKLKLYIGLFIAIILGIAGLIVWKWGFIMLIRIILSLGFLGLTLMLGFFLALTIYAESW
Sbjct: 1 MDKLKLYIGLFIAIILGIAGLIVWKWGFIMLIRIILSLGFLGLTLMLGFFLALTIYAESW 60
Query: 61 KYALLLLPFTAISAYGTYLSVTWQKLKVVGGIIAFFIIAVAFGIWYISEPDLTIMDRFRS 120
KYALLLLPFTAISAYGTYLSVTWQKLKVVGGIIAFFIIAVAFGIWYISEPDLTIMDRFRS
Sbjct: 61 KYALLLLPFTAISAYGTYLSVTWQKLKVVGGIIAFFIIAVAFGIWYISEPDLTIMDRFRS 120
Query: 121 AETLEKMGRYKQAARKYEKAGNYKKAAEMYLKLGWLESAAWAYEKAGEYAKAAELYEKLY 180
AETLEKMGRYKQAARKYEKAGNYKKAAEMYLKLGWLESAAWAYEKAGEYAKAAELYEKLY
Sbjct: 121 AETLEKMGRYKQAARKYEKAGNYKKAAEMYLKLGWLESAAWAYEKAGEYAKAAELYEKLY 180
Query: 181 EKEKDTYYLKEAHEYWKKAGNMERAARALERYAQEEPWFWEDVAKLYEEMGNQEKAREAW 240
EKEKDTYYLKEAHEYWKKAGNMERAARALERYAQEEPWFWEDVAKLYEEMGNQEKAREAW
Sbjct: 181 EKEKDTYYLKEAHEYWKKAGNMERAARALERYAQEEPWFWEDVAKLYEEMGNQEKAREAW 240
Query: 241 EKALEYYMGEAKEEGVFWEDVGNIARKLGKEELAREAYQKFLEYCLKEAEEDPMWWKHVA 300
EKALEYYMGEAKEEGVFWEDVGNIARKLGKEELAREAYQKFLEYCLKEAEEDPMWWKHVA
Sbjct: 241 EKALEYYMGEAKEEGVFWEDVGNIARKLGKEELAREAYQKFLEYCLKEAEEDPMWWKHVA 300
Query: 301 EAYEYLGEKEKAEEARKKYEEYRKKIMKTNEETSKFPE 338
EAYEYLGEKEKAEEARKKYEEYRKKIMKTNEETSKFPE
Sbjct: 301 EAYEYLGEKEKAEEARKKYEEYRKKIMKTNEETSKFPE 338
>pir||E71195 hypothetical protein PH1836 - Pyrococcus horikoshii
>gi|3258273|dbj|BAA30956.1| (AP000007) 338aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 338
Score = 650 bits (1659), Expect = 0.0
Identities = 306/337 (90%), Positives = 324/337 (95%)
Query: 1 MDKLKLYIGLFIAIILGIAGLIVWKWGFIMLIRIILSLGFLGLTLMLGFFLALTIYAESW 60
MDKLKLYIGLFI IILGIAG I+WKWG ML+RI+LSLGFLGLTLMLGFFLALTIYAESW
Sbjct: 1 MDKLKLYIGLFIVIILGIAGFIIWKWGLTMLVRIVLSLGFLGLTLMLGFFLALTIYAESW 60
Query: 61 KYALLLLPFTAISAYGTYLSVTWQKLKVVGGIIAFFIIAVAFGIWYISEPDLTIMDRFRS 120
KYALLLLPFTAISAYGTYLS+TWQKL +VGGII FFII AFGIWYISEPDLTI DRFRS
Sbjct: 61 KYALLLLPFTAISAYGTYLSITWQKLGIVGGIIVFFIIVAAFGIWYISEPDLTIADRFRS 120
Query: 121 AETLEKMGRYKQAARKYEKAGNYKKAAEMYLKLGWLESAAWAYEKAGEYAKAAELYEKLY 180
AE LE MGRYKQAARKYEK GNY+KAAEMYLKLGWLESAAWAYEKAG+YAKAAELYEKLY
Sbjct: 121 AEKLEMMGRYKQAARKYEKEGNYRKAAEMYLKLGWLESAAWAYEKAGDYAKAAELYEKLY 180
Query: 181 EKEKDTYYLKEAHEYWKKAGNMERAARALERYAQEEPWFWEDVAKLYEEMGNQEKAREAW 240
EKEKDTYYLKEAHEYWKKAG+MERAA+ALERYAQEEPWFWEDVAKLYEE+G++EKAREAW
Sbjct: 181 EKEKDTYYLKEAHEYWKKAGDMERAAKALERYAQEEPWFWEDVAKLYEELGDEEKAREAW 240
Query: 241 EKALEYYMGEAKEEGVFWEDVGNIARKLGKEELAREAYQKFLEYCLKEAEEDPMWWKHVA 300
EKALEYYMGEA+EEGVFWEDVGNIA+KLGKE+LA+EAYQKFLEYCLKEAEEDPMWWKHVA
Sbjct: 241 EKALEYYMGEAQEEGVFWEDVGNIAKKLGKEDLAKEAYQKFLEYCLKEAEEDPMWWKHVA 300
Query: 301 EAYEYLGEKEKAEEARKKYEEYRKKIMKTNEETSKFP 337
EAYEYLG+KEKAEEARKKYEEYRKKIMK+NEETS FP
Sbjct: 301 EAYEYLGDKEKAEEARKKYEEYRKKIMKSNEETSNFP 337
>gi|11499946 A. fulgidus predicted coding region AF2369 [Archaeoglobus fulgidus]
>gi|7483819|pir||A69546 hypothetical protein AF2369 -
Archaeoglobus fulgidus >gi|2650728|gb|AAB91297.1|
(AE001112) A. fulgidus predicted coding region AF2369
[Archaeoglobus fulgidus]
Length = 329
Score = 377 bits (957), Expect = e-103
Identities = 183/325 (56%), Positives = 234/325 (71%), Gaps = 1/325 (0%)
Query: 1 MDKLKLYIGLFIAIILGIAGLIVWKWGFIMLIRIILSLGFLGLTLMLGFFLALTIYAESW 60
MD+ +F+A +L AG I + + + L+R+IL L +LG+ + + IYA+S
Sbjct: 1 MDRFTALAIIFLATVLLAAGAIAYFFSPLFLLRLILFLAYLGVAAISAIMAGVLIYAKS- 59
Query: 61 KYALLLLPFTAISAYGTYLSVTWQKLKVVGGIIAFFIIAVAFGIWYISEPDLTIMDRFRS 120
KY L L S Y Y TW+ V I A +I+A AFG+W+ISEPDLT+ +R RS
Sbjct: 60 KYTLPSLLSLIASLYALYQCYTWENPMHVAYITAAYILAFAFGLWWISEPDLTLYERLRS 119
Query: 121 AETLEKMGRYKQAARKYEKAGNYKKAAEMYLKLGWLESAAWAYEKAGEYAKAAELYEKLY 180
A+ LE GRY+ AARKYEK+GNYK AAE YLK G ESAAW YEKA E++KAAE+YEKL
Sbjct: 120 AKALENAGRYRAAARKYEKSGNYKSAAECYLKAGMEESAAWCYEKAEEFSKAAEIYEKLA 179
Query: 181 EKEKDTYYLKEAHEYWKKAGNMERAARALERYAQEEPWFWEDVAKLYEEMGNQEKAREAW 240
++ D+YY KEA+E++KKAG M RAA LERYA+EEPWFWEDVAK+YEE+G+ E A++AW
Sbjct: 180 AEKGDSYYWKEAYEFYKKAGEMRRAAECLERYAEEEPWFWEDVAKIYEEIGDSENAKKAW 239
Query: 241 EKALEYYMGEAKEEGVFWEDVGNIARKLGKEELAREAYQKFLEYCLKEAEEDPMWWKHVA 300
++ALEYY+ EA+EEGVFWEDV I KLG+ E AREA KF YC EAE DPMWWKHV
Sbjct: 240 QRALEYYIEEAEEEGVFWEDVTKIYEKLGESEKAREAMLKFAAYCESEAENDPMWWKHVG 299
Query: 301 EAYEYLGEKEKAEEARKKYEEYRKK 325
EAY+YLGE+EKA+EA +KY Y+++
Sbjct: 300 EAYQYLGEEEKAKEAFEKYHNYKQQ 324
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125008719
Number of Sequences: 2977
Number of extensions: 5344827
Number of successful extensions: 29390
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29310
Number of HSP's gapped (non-prelim): 5
length of query: 338
length of database: 189,106,746
effective HSP length: 54
effective length of query: 284
effective length of database: 156,788,448
effective search space: 44527919232
effective search space used: 44527919232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)