BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2412 (PAB2412) DE:Hypothetical protein
         (415 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75179 hypothetical protein PAB2412 - Pyrococcus abyssi (st...   832  0.0
pir||B71034 hypothetical protein PH1562 - Pyrococcus horikoshii ...   718  0.0

>pir||G75179 hypothetical protein PAB2412 - Pyrococcus abyssi (strain Orsay)
           >gi|5458028|emb|CAB49518.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 415
           
 Score =  832 bits (2125), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MPTTEELIARINKILDDISIDVPGLFESFDVPKIFFTLRNQMESLKELEEELERRVGELG 60
           MPTTEELIARINKILDDISIDVPGLFESFDVPKIFFTLRNQMESLKELEEELERRVGELG
Sbjct: 1   MPTTEELIARINKILDDISIDVPGLFESFDVPKIFFTLRNQMESLKELEEELERRVGELG 60

Query: 61  PTPIFKEKKSKDPHLSWIYRKRHYRVLTLERLRSAITAHKIAISILSANYILKKGKHEVS 120
           PTPIFKEKKSKDPHLSWIYRKRHYRVLTLERLRSAITAHKIAISILSANYILKKGKHEVS
Sbjct: 61  PTPIFKEKKSKDPHLSWIYRKRHYRVLTLERLRSAITAHKIAISILSANYILKKGKHEVS 120

Query: 121 VDSLKKEDLSKVKVIERTPRLGRIEILPYLAYSGDVLKLLGQRGVDVREGFKFIKGKLRE 180
           VDSLKKEDLSKVKVIERTPRLGRIEILPYLAYSGDVLKLLGQRGVDVREGFKFIKGKLRE
Sbjct: 121 VDSLKKEDLSKVKVIERTPRLGRIEILPYLAYSGDVLKLLGQRGVDVREGFKFIKGKLRE 180

Query: 181 EGVVRKEKFRIEVEYWDEGKLKKERIDLPIDADIEGELRKRFGKRFRWRVLSYIKTMGVL 240
           EGVVRKEKFRIEVEYWDEGKLKKERIDLPIDADIEGELRKRFGKRFRWRVLSYIKTMGVL
Sbjct: 181 EGVVRKEKFRIEVEYWDEGKLKKERIDLPIDADIEGELRKRFGKRFRWRVLSYIKTMGVL 240

Query: 241 INNHYTVDNLALAYSTYDPKNGGELLALDLFKYYFLTSEKDREDNPLYPGLRTCVDCHYS 300
           INNHYTVDNLALAYSTYDPKNGGELLALDLFKYYFLTSEKDREDNPLYPGLRTCVDCHYS
Sbjct: 241 INNHYTVDNLALAYSTYDPKNGGELLALDLFKYYFLTSEKDREDNPLYPGLRTCVDCHYS 300

Query: 301 LFDLPFRNREDFKVGFGSILIIRKCEAEKLLTSKRSEITRLPNYVLGGVILYGISPFSED 360
           LFDLPFRNREDFKVGFGSILIIRKCEAEKLLTSKRSEITRLPNYVLGGVILYGISPFSED
Sbjct: 301 LFDLPFRNREDFKVGFGSILIIRKCEAEKLLTSKRSEITRLPNYVLGGVILYGISPFSED 360

Query: 361 EVSKILGIDVEELKEGIRKFVVSGLHKVVFSNVEKFEKFMPKSERAKKFLELLQG 415
           EVSKILGIDVEELKEGIRKFVVSGLHKVVFSNVEKFEKFMPKSERAKKFLELLQG
Sbjct: 361 EVSKILGIDVEELKEGIRKFVVSGLHKVVFSNVEKFEKFMPKSERAKKFLELLQG 415


>pir||B71034 hypothetical protein PH1562 - Pyrococcus horikoshii
           >gi|3257991|dbj|BAA30674.1| (AP000006) 417aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 417
           
 Score =  718 bits (1833), Expect = 0.0
 Identities = 345/417 (82%), Positives = 391/417 (93%), Gaps = 2/417 (0%)

Query: 1   MPTTEELIARINKILDDISIDVPGLFESFDVPKIFFTLRNQMESLKELEEELERRVGELG 60
           MPTTEELIARINKILDDISID+PGLFE  D+PKIF TL++Q+ESLKELEEELERRVGELG
Sbjct: 1   MPTTEELIARINKILDDISIDIPGLFEDLDIPKIFLTLKDQLESLKELEEELERRVGELG 60

Query: 61  PTPIFKEKKSKDPHLSWIYRKRHYRVLTLERLRSAITAHKIAISILSANYILKKGKHEVS 120
           PTPI KEK+SKDPHLSWIYRKRHYR+LTLERLRSAITAH+IA++IL+ANY LKKGK E+S
Sbjct: 61  PTPIIKEKRSKDPHLSWIYRKRHYRILTLERLRSAITAHRIALAILNANYTLKKGKSEIS 120

Query: 121 VDSLKKEDLSKVKVIERTPRLGRIEILPYLAYSGDVLKLLGQRGVDVREGFKFIKGKLRE 180
            +SLKK DL KVKVIE+  +LGR+EILPYLAYSGDVLKLLGQRG++VRE FK IK +LRE
Sbjct: 121 PESLKKSDLGKVKVIEKELQLGRVEILPYLAYSGDVLKLLGQRGIEVRESFKDIKSRLRE 180

Query: 181 EGVVRKEKFRIEVEYWDEGKLKKERIDLPIDADIEGELRKRFGKRFRWRVLSYIKTMGVL 240
           EGVVRKE+FRIEVEYW+EGKLKKE++DLPIDADIE ELRKRFGKRFRWRVLSYIKT+GVL
Sbjct: 181 EGVVRKERFRIEVEYWEEGKLKKEKLDLPIDADIEEELRKRFGKRFRWRVLSYIKTLGVL 240

Query: 241 INNHYTVDNLALAYSTYDPKNGGELLALDLFKYYFLTSEKDREDNPLYPGLRTCVDCHYS 300
           INNHYTVDNLALAY+TYDPK G ELLALDLF+YYFLTSEK+RE   LYPGLR+C+DCHYS
Sbjct: 241 INNHYTVDNLALAYATYDPKRGSELLALDLFRYYFLTSEKERETTLLYPGLRSCIDCHYS 300

Query: 301 LFDLPFRNREDFKVGFGSILIIRKCEAEKLLTSKRSEITRLPNYVLGGVILYGISPFSED 360
           LFD+PF+NR+DFK+GFGS+L+IRKCE E+LL+ KR+EI RLPNY+LGGVILYGISPFSED
Sbjct: 301 LFDIPFKNRKDFKIGFGSMLLIRKCEIERLLSKKRTEIARLPNYILGGVILYGISPFSED 360

Query: 361 EVSKILGIDVEELKEGIRKFVVSGLHKVVFSN--VEKFEKFMPKSERAKKFLELLQG 415
           EVSKILGID+EELKEGIRKF+VSGL+KVVFS   ++KFEKFMP+SE+AKKFLELLQG
Sbjct: 361 EVSKILGIDLEELKEGIRKFIVSGLYKVVFSESALKKFEKFMPRSEKAKKFLELLQG 417


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154716699
Number of Sequences: 2977
Number of extensions: 6787634
Number of successful extensions: 17745
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17738
Number of HSP's gapped (non-prelim): 2
length of query: 415
length of database: 189,106,746
effective HSP length: 56
effective length of query: 359
effective length of database: 155,591,474
effective search space: 55857339166
effective search space used: 55857339166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)