BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2413 (PAB2413) DE:Hypothetical protein
         (139 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75179 hypothetical protein PAB2413 - Pyrococcus abyssi (st...   275  2e-73
pir||H71033 hypothetical protein PH1560 - Pyrococcus horikoshii ...   226  7e-59
pir||A69178 conserved hypothetical protein MTH589 - Methanobacte...    91  6e-18
sp|Q58870|YE75_METJA HYPOTHETICAL PROTEIN MJ1475 >gi|2128884|pir...    75  3e-13

>pir||H75179 hypothetical protein PAB2413 - Pyrococcus abyssi (strain Orsay)
           >gi|5458029|emb|CAB49519.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 139
           
 Score =  275 bits (696), Expect = 2e-73
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MRIMRVEITARNIRELLRKIDENLNEDVTEVYINLRPTKEVIVRILDNAPNVKVIGCPPS 60
           MRIMRVEITARNIRELLRKIDENLNEDVTEVYINLRPTKEVIVRILDNAPNVKVIGCPPS
Sbjct: 1   MRIMRVEITARNIRELLRKIDENLNEDVTEVYINLRPTKEVIVRILDNAPNVKVIGCPPS 60

Query: 61  LYPKVSKKVLRALEQMGIKVIPVEKGRGRPRKYSYKTLMMIEELLKKGKTPREISRDLGI 120
           LYPKVSKKVLRALEQMGIKVIPVEKGRGRPRKYSYKTLMMIEELLKKGKTPREISRDLGI
Sbjct: 61  LYPKVSKKVLRALEQMGIKVIPVEKGRGRPRKYSYKTLMMIEELLKKGKTPREISRDLGI 120

Query: 121 PIRTLYYLLKKREVSEIEG 139
           PIRTLYYLLKKREVSEIEG
Sbjct: 121 PIRTLYYLLKKREVSEIEG 139


>pir||H71033 hypothetical protein PH1560 - Pyrococcus horikoshii
           >gi|3257989|dbj|BAA30672.1| (AP000006) 140aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 140
           
 Score =  226 bits (571), Expect = 7e-59
 Identities = 110/140 (78%), Positives = 128/140 (90%), Gaps = 2/140 (1%)

Query: 1   MRIMRVEITARNIRELLRKIDENLNEDVTEVYINLRPTKEVIVRILDNAPNVKVIGCPPS 60
           MR+MRVEI  RN+RELL++IDE LNEDVTEVYINLRPTKE+IVRIL+N+PNVKVIGCPPS
Sbjct: 1   MRVMRVEIKGRNVRELLKRIDEVLNEDVTEVYINLRPTKEIIVRILENSPNVKVIGCPPS 60

Query: 61  LYPKVSKKVLRALEQMGIKVIPVEKGRGRPRKYSYKTLMMIEELLKKGKTPREISRDLGI 120
           LYPKVSKKV+RALEQMGIK+IPVEKGRGRP+KYS +TL +I E+L+ GKTPREIS+ LGI
Sbjct: 61  LYPKVSKKVMRALEQMGIKIIPVEKGRGRPKKYSTRTLEVINEMLRSGKTPREISKTLGI 120

Query: 121 PIRTLYYLL--KKREVSEIE 138
           PIRTLYYL+   KREV ++E
Sbjct: 121 PIRTLYYLIANMKREVEKVE 140


>pir||A69178 conserved hypothetical protein MTH589 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621668|gb|AAB85095.1| (AE000841) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 158
           
 Score = 90.9 bits (222), Expect = 6e-18
 Identities = 43/99 (43%), Positives = 69/99 (69%), Gaps = 1/99 (1%)

Query: 30  EVYINLRPTKEVIVRILDNAPNVKVIGCPPSLYPKVSKKVLRALEQMGIKVIPVEKGRGR 89
           ++++N   T   I+ +L+  P++K I CP SLY + S++ L ALE++G+ V PV K  GR
Sbjct: 8   KIHVNQPLTSRRIIELLEKNPDLKEITCPISLYHRTSRRYLDALEELGVNVSPV-KRIGR 66

Query: 90  PRKYSYKTLMMIEELLKKGKTPREISRDLGIPIRTLYYL 128
           PRKY+   + +++ LLK+GKTP++IS    IP++T+YYL
Sbjct: 67  PRKYTDNDVKLVQSLLKEGKTPKQISGITNIPLKTVYYL 105


>sp|Q58870|YE75_METJA HYPOTHETICAL PROTEIN MJ1475 >gi|2128884|pir||B64484 hypothetical
           protein MJ1475 - Methanococcus jannaschii
           >gi|1592114|gb|AAB99488.1| (U67588) M. jannaschii
           predicted coding region MJ1475 [Methanococcus
           jannaschii]
           Length = 125
           
 Score = 75.3 bits (182), Expect = 3e-13
 Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 16/132 (12%)

Query: 7   EITARNIRELLRKIDENLNEDVTEVYINLRPTKEVIVRILDNAPNVKVIGCPPSLYPKVS 66
           ++ A+   EL+ KI E  NE+  E+YINL   ++V + +L++    K+   P S Y + S
Sbjct: 3   KLIAKTKEELIEKIKECENEE--EIYINLELDRDVAIALLESCEPKKIY-LPKSKYKRSS 59

Query: 67  KKVLRALEQMGIKVIPVEKGRGRPRKYSYKTLMMIEELLKK--GKTPREISRDLGIPIRT 124
           KK+++ALE + ++VIP++   GRP          +++++KK   K P+EI+   GI I+T
Sbjct: 60  KKIIKALEGVDVEVIPIKAKTGRPTN--------VDKIIKKYLDKKPKEIAEITGINIKT 111

Query: 125 L---YYLLKKRE 133
           +   YY LKK+E
Sbjct: 112 VEYHYYKLKKKE 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.141    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48101655
Number of Sequences: 2977
Number of extensions: 1907042
Number of successful extensions: 6162
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6157
Number of HSP's gapped (non-prelim): 6
length of query: 139
length of database: 189,106,746
effective HSP length: 55
effective length of query: 84
effective length of database: 156,189,961
effective search space: 13119956724
effective search space used: 13119956724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)