BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2415 (PAB2415) DE:Hypothetical protein
(235 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (st... 480 e-135
pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii ... 450 e-126
pir||G72280 conserved hypothetical protein - Thermotoga maritima... 178 7e-44
pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (st... 93 3e-18
pir||H75115 hypothetical protein PAB1886 - Pyrococcus abyssi (st... 92 6e-18
pir||H71016 hypothetical protein PH1429 - Pyrococcus horikoshii ... 91 1e-17
pir||B64463 hypothetical protein MJ1307 - Methanococcus jannasch... 91 1e-17
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu... 84 1e-15
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh... 78 1e-13
pir||B69033 conserved hypothetical protein MTH1243 - Methanobact... 71 9e-12
emb|CAB52786.1| (AJ243656) transmembrane protein 16.3 kDa [Metha... 71 1e-11
>pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (strain Orsay)
>gi|5458132|emb|CAB49621.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 235
Score = 480 bits (1222), Expect = e-135
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR 60
MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR
Sbjct: 1 MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR 60
Query: 61 GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH 120
GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH
Sbjct: 61 GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH 120
Query: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY 180
GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY
Sbjct: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY 180
Query: 181 FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE 235
FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE
Sbjct: 181 FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE 235
>pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii
>gi|3257878|dbj|BAA30561.1| (AP000006) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 450 bits (1145), Expect = e-126
Identities = 216/235 (91%), Positives = 230/235 (96%)
Query: 1 MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR 60
MLKR+L+II ILIIGYW+A+GLANVPFG+D+MLVG+YYL HVKEQTGAVNAVTAVVVNYR
Sbjct: 7 MLKRLLSIILILIIGYWIAQGLANVPFGEDRMLVGKYYLQHVKEQTGAVNAVTAVVVNYR 66
Query: 61 GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH 120
GFDTLGEVTVLFIASTGVAALLWR++RERTAKT GS+VLTTGSKLLFPFI+LFGMYIFIH
Sbjct: 67 GFDTLGEVTVLFIASTGVAALLWRKRRERTAKTEGSLVLTTGSKLLFPFIMLFGMYIFIH 126
Query: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY 180
GHLTPGGGFPGGATIAT FLLMYLAFIVYEIPH+GFE TEGLAGMSYVLVGLIGLAIGGY
Sbjct: 127 GHLTPGGGFPGGATIATGFLLMYLAFIVYEIPHRGFEVTEGLAGMSYVLVGLIGLAIGGY 186
Query: 181 FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE 235
FLFDWIWQTWH+GTSNLGRLFSGGFIPVIYT+IGIKVGTELSGIIDNMLKEEVKE
Sbjct: 187 FLFDWIWQTWHFGTSNLGRLFSGGFIPVIYTLIGIKVGTELSGIIDNMLKEEVKE 241
>pir||G72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981762|gb|AAD36284.1|AE001778_5 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 254
Score = 178 bits (446), Expect = 7e-44
Identities = 96/212 (45%), Positives = 135/212 (63%), Gaps = 15/212 (7%)
Query: 17 WLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYRGFDTLGEVTVLFIAST 76
W+ EG VP ++ + G+ L + G+ N VT++VVNYR FDTLGEVTVL A+
Sbjct: 53 WI-EGNLQVP--SERRIYGESNL-----EDGSANVVTSIVVNYRSFDTLGEVTVLLAAAI 104
Query: 77 GVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIA 136
GV +L +R + + P + +L + +L P I++FG+YIF+HGHL+PGGGFPGG IA
Sbjct: 105 GVGTILRGSRRMKYRREP-NFILKVSTGILLPLILMFGVYIFVHGHLSPGGGFPGGTVIA 163
Query: 137 TAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSN 196
A LL+YL+ + + + EG G YVLVGLIGL GG FL++++ T
Sbjct: 164 AAILLLYLSNEEFTLNEGRAKLLEGSMGALYVLVGLIGLLTGGAFLYNFL------STGR 217
Query: 197 LGRLFSGGFIPVIYTIIGIKVGTELSGIIDNM 228
+G LFS G +PV+Y IIG+KVG+ELSG+I +
Sbjct: 218 VGDLFSAGVVPVVYIIIGLKVGSELSGVISEI 249
>pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (strain Orsay)
>gi|5458887|emb|CAB50374.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 239
Score = 93.2 bits (228), Expect = 3e-18
Identities = 59/187 (31%), Positives = 98/187 (51%), Gaps = 14/187 (7%)
Query: 5 VLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHV---KEQTGAVNAVTAVVVNYRG 61
++ +I I+ + Y++ +P + +G++YL + + VT+++ +YRG
Sbjct: 8 IIMLIAIISLAYYV-----KLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDYRG 62
Query: 62 FDTLGEVTVLFIASTGVAALLWRRKRERTAKTPG-SVVLTTGSKLLFPFIVLFGMYIFIH 120
DTL E +V F+A G AL +RER K+ G ++++ +K++ I+ I +H
Sbjct: 63 VDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIALH 122
Query: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMS-----YVLVGLIGL 175
GHLTPGGGF GG+ +A A LL+ A+ Y + G + T L S LV LI L
Sbjct: 123 GHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALIPL 182
Query: 176 AIGGYFL 182
GG+ +
Sbjct: 183 LEGGFIM 189
>pir||H75115 hypothetical protein PAB1886 - Pyrococcus abyssi (strain Orsay)
>gi|5458152|emb|CAB49641.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 147
Score = 92.1 bits (225), Expect = 6e-18
Identities = 50/129 (38%), Positives = 74/129 (56%), Gaps = 6/129 (4%)
Query: 97 VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIVYE----IP 152
V++ T ++ L P I +FG YI +HGHLTPGGGF GGATI LL +AF V E I
Sbjct: 6 VIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKRIN 65
Query: 153 HKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTI 212
+ EG+ G+ ++ V ++GL++ F ++ +W G L S GF+P++
Sbjct: 66 KDLYSALEGVGGLVFLGVAMLGLSVA--FFYNVLWHKGPLFNGKPGTLLSAGFLPIMNLG 123
Query: 213 IGIKVGTEL 221
+G+KV T L
Sbjct: 124 VGLKVFTGL 132
>pir||H71016 hypothetical protein PH1429 - Pyrococcus horikoshii
>gi|3257853|dbj|BAA30536.1| (AP000006) 147aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 147
Score = 91.3 bits (223), Expect = 1e-17
Identities = 49/129 (37%), Positives = 73/129 (55%), Gaps = 6/129 (4%)
Query: 97 VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIVYE----IP 152
V++ T ++ L P I +FG YI +HGHLTPGGGF GGATI LL +AF V E I
Sbjct: 6 VIVKTNARALIPLIGVFGSYIILHGHLTPGGGFQGGATIVGTALLFLIAFGVDEAKKRIN 65
Query: 153 HKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTI 212
+ EG+ G+ ++ ++GL++ F ++ +W G L S GF+P++
Sbjct: 66 KDLYSALEGIGGLVFLGAAMLGLSVA--FFYNILWHKGPLFNGRPGTLLSAGFLPIMNLG 123
Query: 213 IGIKVGTEL 221
+G+KV T L
Sbjct: 124 VGLKVFTGL 132
>pir||B64463 hypothetical protein MJ1307 - Methanococcus jannaschii
>gi|1591946|gb|AAB99315.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 262
Score = 90.9 bits (222), Expect = 1e-17
Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 29/242 (11%)
Query: 3 KRVLAI-ITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYRG 61
KR LA+ I+ + G + LA++ V + YL H N V AV+ ++R
Sbjct: 4 KRDLAVAISFFVFGASVLYSLAHMQISPG---VNEVYLTHYI----IPNYVCAVIFDWRA 56
Query: 62 FDTLGEVTVLFIA--------------STGVAALLWRRKRERTAKTPGSVVLTTGSKLL- 106
+DTLGE VL +A +T + L + + G T K L
Sbjct: 57 YDTLGECLVLVVAVMVSWIVFGKSLYDNTYLKELFHAPESDDYITLQGWGEYTPIIKFLA 116
Query: 107 FPFIVL---FGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAF---IVYEIPHKGFETTE 160
FP VL G+ + GH+TPGGGF GGA IA AF+L +AF HK E E
Sbjct: 117 FPMSVLMVALGIITVLGGHITPGGGFQGGALIAAAFILSVIAFGSNSPLWFDHKFLEKLE 176
Query: 161 GLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTE 220
L + Y+L+G+ G+ IGGY+LF++ + + G IP + +G+KV
Sbjct: 177 ALGALGYLLLGVAGMFIGGYYLFNFTEINGFTIFPAPKEIITAGIIPYLNIAVGLKVLAG 236
Query: 221 LS 222
LS
Sbjct: 237 LS 238
>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 933
Score = 84.3 bits (205), Expect = 1e-15
Identities = 52/169 (30%), Positives = 85/169 (49%), Gaps = 12/169 (7%)
Query: 34 VGQYYLNHVKEQTGAVNAVTAVVVNYRGFDTLGEVTVLFIASTGVAALLWRRKRERTAKT 93
+ +++ + G N V ++V++RGFDTLGE++VL IA G+ A+L +
Sbjct: 715 IAGFFVENSVSGGGGYNVVNVILVDFRGFDTLGEISVLAIAGVGIYAMLAGFALHKPTCD 774
Query: 94 PGS---------VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYL 144
P ++L T S++L P +L ++IF+ GH PGGGF G A A +L Y+
Sbjct: 775 PQGRNWAHAKHPLILETLSRVLLPLALLISVFIFLRGHNLPGGGFIAGLVTAIALVLQYI 834
Query: 145 AFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWG 193
A + + +AG ++ GL GL G +LF + + T +G
Sbjct: 835 ASGSQWVEQRLPLNYAAMAGAGVLIAGLTGL---GSWLFGYPFLTSAFG 880
>pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rhodobacter
capsulatus >gi|3128268|gb|AAC16120.1| (AF010496)
NADH-quinone oxidoreductase chain 5 [Rhodobacter
capsulatus]
Length = 961
Score = 77.6 bits (188), Expect = 1e-13
Identities = 52/172 (30%), Positives = 81/172 (46%), Gaps = 17/172 (9%)
Query: 34 VGQYYLNHVKEQTGAVNAVTAVVVNYRGFDTLGEVTVLFIASTGVAALL--WRRKRERTA 91
VG ++L + + G N V ++V++R FDT GE+TVL I V ALL +R E T
Sbjct: 730 VGDWFLRNAYHEGGGTNVVNVILVDFRAFDTFGEITVLAIVGITVFALLRRFRPAPESTT 789
Query: 92 KTP------------GSVVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAF 139
+T +V + + +FP +++ +F GH PGGGF G T++ A
Sbjct: 790 RTEEEAGLRDPTLAHALLVPSVIMRWMFPVLIVLAAILFFRGHDLPGGGFSAGVTVSIAI 849
Query: 140 LLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWH 191
LL YL + + + G+ ++ G GL G F+F + T H
Sbjct: 850 LLQYLGHDLRWVEARLTVLPIRWMGVGLLIAGGTGL---GAFVFGHPFLTAH 898
>pir||B69033 conserved hypothetical protein MTH1243 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622355|gb|AAB85732.1| (AE000891) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 153
Score = 71.4 bits (172), Expect = 9e-12
Identities = 43/139 (30%), Positives = 70/139 (49%), Gaps = 12/139 (8%)
Query: 109 FIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIV----YEIPHKGFETTEGLAG 164
FI+ G+ + GH+TPGGGF GGA +A F+ + + + ++ H+ E +
Sbjct: 15 FIMCLGILTVLGGHITPGGGFQGGAMVAAGFIFCAVVYGIERSPFQFSHEFMSAMESIVA 74
Query: 165 MSYVLVGLIGLAIGGYFLFDW---IWQTWH--WGTSNLGRLFSGGFIPVIYTIIGIKVGT 219
+ YV +GL GL G+FL++ ++ H G N G IP + ++G+KV
Sbjct: 75 LGYVGLGLCGLLFSGFFLYNLGVDLYGVSHAVSGFFNYPDPTDAGIIPYLNIVVGLKVMV 134
Query: 220 ELSGIIDNMLK---EEVKE 235
LS I+ ++ EEV E
Sbjct: 135 GLSAIVITFMEFRGEEVTE 153
>emb|CAB52786.1| (AJ243656) transmembrane protein 16.3 kDa [Methanobacterium
thermoautotrophicum]
Length = 153
Score = 71.0 bits (171), Expect = 1e-11
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 109 FIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIV----YEIPHKGFETTEGLAG 164
FI+ G+ + GH+TPGGGF GGA +A F+ + + + ++ H+ E +
Sbjct: 15 FIMCLGILTVLGGHITPGGGFQGGAMVAAGFIFCAVVYGIEKSPFQFSHEFMSAMESIGA 74
Query: 165 MSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFS------GGFIPVIYTIIGIKVG 218
+ YV +GL GL G+FL++ + + + ++ F+ G IP + ++G+KV
Sbjct: 75 LGYVALGLCGLLFSGFFLYN-LGVDLYGISQSVSGFFNYPDPTHAGIIPYLNIVVGLKVL 133
Query: 219 TELSGIIDNMLK---EEVKE 235
LS I+ ++ EEV E
Sbjct: 134 VGLSAIVITFMEFRGEEVTE 153
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.145 0.450
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92912377
Number of Sequences: 2977
Number of extensions: 4195294
Number of successful extensions: 16051
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16031
Number of HSP's gapped (non-prelim): 14
length of query: 235
length of database: 189,106,746
effective HSP length: 49
effective length of query: 186
effective length of database: 159,780,883
effective search space: 29719244238
effective search space used: 29719244238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)