BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2415 (PAB2415) DE:Hypothetical protein
         (235 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (st...   480  e-135
pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii ...   450  e-126
pir||G72280 conserved hypothetical protein - Thermotoga maritima...   178  7e-44
pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (st...    93  3e-18
pir||H75115 hypothetical protein PAB1886 - Pyrococcus abyssi (st...    92  6e-18
pir||H71016 hypothetical protein PH1429 - Pyrococcus horikoshii ...    91  1e-17
pir||B64463 hypothetical protein MJ1307 - Methanococcus jannasch...    91  1e-17
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu...    84  1e-15
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh...    78  1e-13
pir||B69033 conserved hypothetical protein MTH1243 - Methanobact...    71  9e-12
emb|CAB52786.1| (AJ243656) transmembrane protein 16.3 kDa [Metha...    71  1e-11

>pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (strain Orsay)
           >gi|5458132|emb|CAB49621.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 235
           
 Score =  480 bits (1222), Expect = e-135
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR 60
           MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR
Sbjct: 1   MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR 60

Query: 61  GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH 120
           GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH
Sbjct: 61  GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH 120

Query: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY 180
           GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY
Sbjct: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY 180

Query: 181 FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE 235
           FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE
Sbjct: 181 FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE 235


>pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii
           >gi|3257878|dbj|BAA30561.1| (AP000006) 241aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 241
           
 Score =  450 bits (1145), Expect = e-126
 Identities = 216/235 (91%), Positives = 230/235 (96%)

Query: 1   MLKRVLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYR 60
           MLKR+L+II ILIIGYW+A+GLANVPFG+D+MLVG+YYL HVKEQTGAVNAVTAVVVNYR
Sbjct: 7   MLKRLLSIILILIIGYWIAQGLANVPFGEDRMLVGKYYLQHVKEQTGAVNAVTAVVVNYR 66

Query: 61  GFDTLGEVTVLFIASTGVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIH 120
           GFDTLGEVTVLFIASTGVAALLWR++RERTAKT GS+VLTTGSKLLFPFI+LFGMYIFIH
Sbjct: 67  GFDTLGEVTVLFIASTGVAALLWRKRRERTAKTEGSLVLTTGSKLLFPFIMLFGMYIFIH 126

Query: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGY 180
           GHLTPGGGFPGGATIAT FLLMYLAFIVYEIPH+GFE TEGLAGMSYVLVGLIGLAIGGY
Sbjct: 127 GHLTPGGGFPGGATIATGFLLMYLAFIVYEIPHRGFEVTEGLAGMSYVLVGLIGLAIGGY 186

Query: 181 FLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTELSGIIDNMLKEEVKE 235
           FLFDWIWQTWH+GTSNLGRLFSGGFIPVIYT+IGIKVGTELSGIIDNMLKEEVKE
Sbjct: 187 FLFDWIWQTWHFGTSNLGRLFSGGFIPVIYTLIGIKVGTELSGIIDNMLKEEVKE 241


>pir||G72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981762|gb|AAD36284.1|AE001778_5 (AE001778)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 254
           
 Score =  178 bits (446), Expect = 7e-44
 Identities = 96/212 (45%), Positives = 135/212 (63%), Gaps = 15/212 (7%)

Query: 17  WLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYRGFDTLGEVTVLFIAST 76
           W+ EG   VP   ++ + G+  L     + G+ N VT++VVNYR FDTLGEVTVL  A+ 
Sbjct: 53  WI-EGNLQVP--SERRIYGESNL-----EDGSANVVTSIVVNYRSFDTLGEVTVLLAAAI 104

Query: 77  GVAALLWRRKRERTAKTPGSVVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIA 136
           GV  +L   +R +  + P + +L   + +L P I++FG+YIF+HGHL+PGGGFPGG  IA
Sbjct: 105 GVGTILRGSRRMKYRREP-NFILKVSTGILLPLILMFGVYIFVHGHLSPGGGFPGGTVIA 163

Query: 137 TAFLLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSN 196
            A LL+YL+   + +     +  EG  G  YVLVGLIGL  GG FL++++       T  
Sbjct: 164 AAILLLYLSNEEFTLNEGRAKLLEGSMGALYVLVGLIGLLTGGAFLYNFL------STGR 217

Query: 197 LGRLFSGGFIPVIYTIIGIKVGTELSGIIDNM 228
           +G LFS G +PV+Y IIG+KVG+ELSG+I  +
Sbjct: 218 VGDLFSAGVVPVVYIIIGLKVGSELSGVISEI 249


>pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (strain Orsay)
           >gi|5458887|emb|CAB50374.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 239
           
 Score = 93.2 bits (228), Expect = 3e-18
 Identities = 59/187 (31%), Positives = 98/187 (51%), Gaps = 14/187 (7%)

Query: 5   VLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHV---KEQTGAVNAVTAVVVNYRG 61
           ++ +I I+ + Y++      +P   +   +G++YL +         +   VT+++ +YRG
Sbjct: 8   IIMLIAIISLAYYV-----KLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDYRG 62

Query: 62  FDTLGEVTVLFIASTGVAALLWRRKRERTAKTPG-SVVLTTGSKLLFPFIVLFGMYIFIH 120
            DTL E +V F+A  G  AL    +RER  K+ G ++++   +K++   I+     I +H
Sbjct: 63  VDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIALH 122

Query: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMS-----YVLVGLIGL 175
           GHLTPGGGF GG+ +A A LL+  A+  Y +   G + T  L   S       LV LI L
Sbjct: 123 GHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALIPL 182

Query: 176 AIGGYFL 182
             GG+ +
Sbjct: 183 LEGGFIM 189


>pir||H75115 hypothetical protein PAB1886 - Pyrococcus abyssi (strain Orsay)
           >gi|5458152|emb|CAB49641.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 147
           
 Score = 92.1 bits (225), Expect = 6e-18
 Identities = 50/129 (38%), Positives = 74/129 (56%), Gaps = 6/129 (4%)

Query: 97  VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIVYE----IP 152
           V++ T ++ L P I +FG YI +HGHLTPGGGF GGATI    LL  +AF V E    I 
Sbjct: 6   VIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKRIN 65

Query: 153 HKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTI 212
              +   EG+ G+ ++ V ++GL++   F ++ +W          G L S GF+P++   
Sbjct: 66  KDLYSALEGVGGLVFLGVAMLGLSVA--FFYNVLWHKGPLFNGKPGTLLSAGFLPIMNLG 123

Query: 213 IGIKVGTEL 221
           +G+KV T L
Sbjct: 124 VGLKVFTGL 132


>pir||H71016 hypothetical protein PH1429 - Pyrococcus horikoshii
           >gi|3257853|dbj|BAA30536.1| (AP000006) 147aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 147
           
 Score = 91.3 bits (223), Expect = 1e-17
 Identities = 49/129 (37%), Positives = 73/129 (55%), Gaps = 6/129 (4%)

Query: 97  VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIVYE----IP 152
           V++ T ++ L P I +FG YI +HGHLTPGGGF GGATI    LL  +AF V E    I 
Sbjct: 6   VIVKTNARALIPLIGVFGSYIILHGHLTPGGGFQGGATIVGTALLFLIAFGVDEAKKRIN 65

Query: 153 HKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTI 212
              +   EG+ G+ ++   ++GL++   F ++ +W          G L S GF+P++   
Sbjct: 66  KDLYSALEGIGGLVFLGAAMLGLSVA--FFYNILWHKGPLFNGRPGTLLSAGFLPIMNLG 123

Query: 213 IGIKVGTEL 221
           +G+KV T L
Sbjct: 124 VGLKVFTGL 132


>pir||B64463 hypothetical protein MJ1307 - Methanococcus jannaschii
           >gi|1591946|gb|AAB99315.1| (U67571) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 262
           
 Score = 90.9 bits (222), Expect = 1e-17
 Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 29/242 (11%)

Query: 3   KRVLAI-ITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHVKEQTGAVNAVTAVVVNYRG 61
           KR LA+ I+  + G  +   LA++        V + YL H        N V AV+ ++R 
Sbjct: 4   KRDLAVAISFFVFGASVLYSLAHMQISPG---VNEVYLTHYI----IPNYVCAVIFDWRA 56

Query: 62  FDTLGEVTVLFIA--------------STGVAALLWRRKRERTAKTPGSVVLTTGSKLL- 106
           +DTLGE  VL +A              +T +  L    + +      G    T   K L 
Sbjct: 57  YDTLGECLVLVVAVMVSWIVFGKSLYDNTYLKELFHAPESDDYITLQGWGEYTPIIKFLA 116

Query: 107 FPFIVL---FGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAF---IVYEIPHKGFETTE 160
           FP  VL    G+   + GH+TPGGGF GGA IA AF+L  +AF         HK  E  E
Sbjct: 117 FPMSVLMVALGIITVLGGHITPGGGFQGGALIAAAFILSVIAFGSNSPLWFDHKFLEKLE 176

Query: 161 GLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTIIGIKVGTE 220
            L  + Y+L+G+ G+ IGGY+LF++              + + G IP +   +G+KV   
Sbjct: 177 ALGALGYLLLGVAGMFIGGYYLFNFTEINGFTIFPAPKEIITAGIIPYLNIAVGLKVLAG 236

Query: 221 LS 222
           LS
Sbjct: 237 LS 238


>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
           NADH dehydrogenase [Pseudomonas aeruginosa]
           Length = 933
           
 Score = 84.3 bits (205), Expect = 1e-15
 Identities = 52/169 (30%), Positives = 85/169 (49%), Gaps = 12/169 (7%)

Query: 34  VGQYYLNHVKEQTGAVNAVTAVVVNYRGFDTLGEVTVLFIASTGVAALLWRRKRERTAKT 93
           +  +++ +     G  N V  ++V++RGFDTLGE++VL IA  G+ A+L      +    
Sbjct: 715 IAGFFVENSVSGGGGYNVVNVILVDFRGFDTLGEISVLAIAGVGIYAMLAGFALHKPTCD 774

Query: 94  PGS---------VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYL 144
           P           ++L T S++L P  +L  ++IF+ GH  PGGGF  G   A A +L Y+
Sbjct: 775 PQGRNWAHAKHPLILETLSRVLLPLALLISVFIFLRGHNLPGGGFIAGLVTAIALVLQYI 834

Query: 145 AFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWG 193
           A     +  +       +AG   ++ GL GL   G +LF + + T  +G
Sbjct: 835 ASGSQWVEQRLPLNYAAMAGAGVLIAGLTGL---GSWLFGYPFLTSAFG 880


>pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rhodobacter
           capsulatus >gi|3128268|gb|AAC16120.1| (AF010496)
           NADH-quinone oxidoreductase chain 5 [Rhodobacter
           capsulatus]
           Length = 961
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 52/172 (30%), Positives = 81/172 (46%), Gaps = 17/172 (9%)

Query: 34  VGQYYLNHVKEQTGAVNAVTAVVVNYRGFDTLGEVTVLFIASTGVAALL--WRRKRERTA 91
           VG ++L +   + G  N V  ++V++R FDT GE+TVL I    V ALL  +R   E T 
Sbjct: 730 VGDWFLRNAYHEGGGTNVVNVILVDFRAFDTFGEITVLAIVGITVFALLRRFRPAPESTT 789

Query: 92  KTP------------GSVVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAF 139
           +T               +V +   + +FP +++    +F  GH  PGGGF  G T++ A 
Sbjct: 790 RTEEEAGLRDPTLAHALLVPSVIMRWMFPVLIVLAAILFFRGHDLPGGGFSAGVTVSIAI 849

Query: 140 LLMYLAFIVYEIPHKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWH 191
           LL YL   +  +  +         G+  ++ G  GL   G F+F   + T H
Sbjct: 850 LLQYLGHDLRWVEARLTVLPIRWMGVGLLIAGGTGL---GAFVFGHPFLTAH 898


>pir||B69033 conserved hypothetical protein MTH1243 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622355|gb|AAB85732.1| (AE000891) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 153
           
 Score = 71.4 bits (172), Expect = 9e-12
 Identities = 43/139 (30%), Positives = 70/139 (49%), Gaps = 12/139 (8%)

Query: 109 FIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIV----YEIPHKGFETTEGLAG 164
           FI+  G+   + GH+TPGGGF GGA +A  F+   + + +    ++  H+     E +  
Sbjct: 15  FIMCLGILTVLGGHITPGGGFQGGAMVAAGFIFCAVVYGIERSPFQFSHEFMSAMESIVA 74

Query: 165 MSYVLVGLIGLAIGGYFLFDW---IWQTWH--WGTSNLGRLFSGGFIPVIYTIIGIKVGT 219
           + YV +GL GL   G+FL++    ++   H   G  N       G IP +  ++G+KV  
Sbjct: 75  LGYVGLGLCGLLFSGFFLYNLGVDLYGVSHAVSGFFNYPDPTDAGIIPYLNIVVGLKVMV 134

Query: 220 ELSGIIDNMLK---EEVKE 235
            LS I+   ++   EEV E
Sbjct: 135 GLSAIVITFMEFRGEEVTE 153


>emb|CAB52786.1| (AJ243656) transmembrane protein 16.3 kDa [Methanobacterium
           thermoautotrophicum]
           Length = 153
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 14/140 (10%)

Query: 109 FIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIV----YEIPHKGFETTEGLAG 164
           FI+  G+   + GH+TPGGGF GGA +A  F+   + + +    ++  H+     E +  
Sbjct: 15  FIMCLGILTVLGGHITPGGGFQGGAMVAAGFIFCAVVYGIEKSPFQFSHEFMSAMESIGA 74

Query: 165 MSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFS------GGFIPVIYTIIGIKVG 218
           + YV +GL GL   G+FL++ +    +  + ++   F+       G IP +  ++G+KV 
Sbjct: 75  LGYVALGLCGLLFSGFFLYN-LGVDLYGISQSVSGFFNYPDPTHAGIIPYLNIVVGLKVL 133

Query: 219 TELSGIIDNMLK---EEVKE 235
             LS I+   ++   EEV E
Sbjct: 134 VGLSAIVITFMEFRGEEVTE 153


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.145    0.450 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92912377
Number of Sequences: 2977
Number of extensions: 4195294
Number of successful extensions: 16051
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16031
Number of HSP's gapped (non-prelim): 14
length of query: 235
length of database: 189,106,746
effective HSP length: 49
effective length of query: 186
effective length of database: 159,780,883
effective search space: 29719244238
effective search space used: 29719244238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)