BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2416 (nuoN) DE:NADH DEHYDROGENASE I N SUBUNIT
(493 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus ab... 958 0.0
pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii ... 869 0.0
pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abys... 292 5e-78
pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii ... 273 3e-72
pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Py... 267 2e-70
gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; Ndh... 235 9e-61
pir||T51314 probable CO-induced hydrogenase complex chain CooM [... 233 3e-60
dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus] 233 5e-60
pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vib... 228 9e-59
gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH r... 217 3e-55
pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (s... 216 5e-55
dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 213 3e-54
pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacil... 210 4e-53
emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis] 209 5e-53
gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subuni... 203 4e-51
sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||... 191 2e-47
sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 183 3e-45
emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyce... 183 4e-45
pir||D64463 conserved hypothetical protein MJ1309 - Methanococcu... 180 2e-44
pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318... 178 9e-44
pir||S61395 probable Na+/H+-exchanging protein system component ... 178 9e-44
pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus ab... 178 2e-43
emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conse... 176 6e-43
sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 175 1e-42
emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreducta... 174 2e-42
pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii ... 174 2e-42
dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus] 173 5e-42
pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 172 9e-42
pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium t... 171 2e-41
pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseu... 171 2e-41
pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 169 5e-41
pir||T34611 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 169 6e-41
gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh... 169 8e-41
gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesos... 168 2e-40
pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - N... 167 3e-40
sp|P29801|NU2C_SYNP7 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 167 3e-40
pir||F83315 NADH dehydrogenase I chain N PA2649 [imported] - Pse... 167 3e-40
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu... 167 3e-40
sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 166 5e-40
gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1] 166 7e-40
sp|P29926|NQOE_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NA... 165 9e-40
gb|AAF03177.1|AF110138_9 (AF110138) NADH dehydrogenase subunit 2... 165 1e-39
gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH r... 165 1e-39
emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti] 164 3e-39
pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 163 5e-39
pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyr... 162 1e-38
pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 161 2e-38
sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 161 2e-38
emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related p... 160 4e-38
gi|11466553 NADH dehydrogenase, subunit 2 [Reclinomonas american... 159 5e-38
gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subuni... 159 7e-38
pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 157 2e-37
pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 157 3e-37
pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (s... 157 3e-37
sp|Q56227|NQOC_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NA... 157 4e-37
sp|P33608|NUON_ECOLI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 156 5e-37
gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus... 156 6e-37
sp|Q56229|NQOE_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NA... 155 8e-37
gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephr... 153 4e-36
pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 153 4e-36
emb|CAC08259.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 153 4e-36
emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related p... 153 5e-36
gb|AAF08189.1| (AF130233) NADH dehydrogenase subunit F [Aquilegi... 152 7e-36
pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 152 1e-35
pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 151 2e-35
gb|AAD52915.1|AF152244_2 (AF152244) NADH dehydrogenase subunit 2... 151 2e-35
pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vib... 151 2e-35
pir||S38323 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 151 2e-35
pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 150 3e-35
gb|AAF78990.1| (L75865) NADH dehydrogenase F [Guzmania monostachya] 150 3e-35
sp|P93401|NU2M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 150 3e-35
pir||H75060 hydrogenase (EC 1.-.-.-) 4 component D PAB1391 [impo... 150 5e-35
emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti] 150 5e-35
pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 149 6e-35
gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea] >gi... 149 8e-35
sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 149 8e-35
gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroid... 149 8e-35
pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 148 1e-34
gi|11467101 nad2 [Marchantia polymorpha] >gi|462764|sp|P26846|NU... 148 1e-34
sp|P05510|NU5M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 148 1e-34
pir||S37071 NADH dehydrogenase I chain nuoN - Escherichia coli >... 148 1e-34
sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||... 148 1e-34
gi|9653248 NADH dehydrogenase subunit 2 [Chondrus crispus] >gi|1... 148 1e-34
gb|AAF08181.1| (AF130225) NADH dehydrogenase subunit F [Rhamnus ... 148 1e-34
gb|AAF08156.1| (AF130200) NADH dehydrogenase subunit F [Osmorhiz... 148 1e-34
pir||F70749 probable hycQ protein - Mycobacterium tuberculosis (... 148 2e-34
pir||T12624 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 148 2e-34
pir||T13696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 148 2e-34
gb|AAA64705.1| (U21987) NADH dehydrogenase F [Zeugites pittieri] 148 2e-34
gb|AAF79015.1| (L75935) NADH dehydrogenase F [Guzmania sanguinea] 148 2e-34
pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 147 2e-34
gb|AAA64703.1| (U21985) NADH dehydrogenase F [Zea mays] 147 2e-34
gb|AAF79012.1| (L75879) NADH dehydrogenase F [Tillandsia dodsonii] 147 2e-34
gb|AAF79018.1| (L75932) NADH dehydrogenase F [Guzmania nicarague... 147 2e-34
pir||T12170 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 147 3e-34
pir||T12171 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 147 3e-34
pir||T12172 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 147 3e-34
pir||T12559 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 147 3e-34
emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocl... 147 3e-34
sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUI... 147 3e-34
gb|AAF79002.1| (L75909) NADH dehydrogenase F [Vriesea triligulata] 147 3e-34
gb|AAA68607.1| (U27296) NADH dehydrogenase F [Chasmanthium laxum... 147 3e-34
emb|CAC17760.1| (AJ400890) NADH dehydrogenase subunit F [Grubbia... 147 3e-34
pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 146 4e-34
emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocl... 146 4e-34
gb|AAG26154.1| (AF123806) NADH dehydrogenase subunit F [Drimys w... 146 4e-34
gi|11466747 ndh5 [Marchantia polymorpha] >gi|128768|sp|P06264|NU... 146 5e-34
pir||T12665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
pir||T12751 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
pir||T12752 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
pir||T12161 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
pir||T12167 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
pir||T12168 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
pir||T12586 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 5e-34
gb|AAF08128.1| (AF130166) NADH dehydrogenase subunit F [Matelea ... 146 5e-34
pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Dei... 146 5e-34
gb|AAF78998.1| (L75913) NADH dehydrogenase F [Vriesea gladiolifl... 146 5e-34
gb|AAA64779.1| (U21974) NADH dehydrogenase F [Leersia virginica] 146 5e-34
gb|AAF78999.1| (L75912) NADH dehydrogenase F [Vriesea espinosae] 146 5e-34
gb|AAF79007.1| (L75937) NADH dehydrogenase F [Tillandsia secunda] 146 5e-34
pir||T12166 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||T12169 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||T03469 probable hydrogenase - Rhodobacter capsulatus >gi|31... 146 7e-34
gb|AAF08190.1| (AF130234) NADH dehydrogenase subunit F [Lamproca... 146 7e-34
emb|CAB64928.1| (AJ236252) NADH dehydrogenase subunit F [Decumar... 146 7e-34
pir||T12165 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
gb|AAF79016.1| (L75934) NADH dehydrogenase F [Guzmania rhonhofiana] 146 7e-34
pir||T12668 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||T12671 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||T13032 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||T12163 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||T12164 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 145 9e-34
pir||T13036 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 145 9e-34
pir||T12162 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 145 9e-34
gb|AAD52740.1|AF123682_1 (AF123682) NADH dehydrogenase [Hemimeri... 145 9e-34
gb|AAF03771.1| (AF147712) NADH dehydrogenase subunit [Hydrostach... 145 9e-34
gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit... 145 9e-34
sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 145 1e-33
gb|AAF78989.1| (L75906) NADH dehydrogenase F [Hohenbergia disjun... 145 1e-33
pir||T12658 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 145 2e-33
pir||T12664 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 145 2e-33
pir||T12759 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 145 2e-33
pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 145 2e-33
gb|AAD26214.1| (AF117397) NADH dehydrogenase [Chionachne koenigii] 145 2e-33
gb|AAF08115.1| (AF130153) NADH dehydrogenase subunit F [Phyla in... 145 2e-33
gb|AAF22411.1|AF047804_1 (AF047804) NADH dehydrogenase [Romanzof... 145 2e-33
sp|Q32880|NU5C_POAPR NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 144 2e-33
gb|AAG26157.1| (AF123809) NADH dehydrogenase subunit F [Lactoris... 144 2e-33
gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU... 144 3e-33
gi|11467252 NADH dehydrogenase ND5 [Zea mays] >gi|1171820|sp|P46... 144 3e-33
pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis ... 144 3e-33
gb|AAF08114.1| (AF130152) NADH dehydrogenase subunit F [Lantana ... 144 3e-33
emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related p... 144 3e-33
sp|Q33066|NU5C_SORBI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 143 3e-33
gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escheri... 143 3e-33
gb|AAD26215.1| (AF117398) NADH dehydrogenase [Chrysopogon fulvus] 143 3e-33
gb|AAD26216.1| (AF117399) NADH dehydrogenase [Chrysopogon gryllus] 143 3e-33
gb|AAD26234.1| (AF117417) NADH dehydrogenase [Miscanthus japonicus] 143 3e-33
gb|AAD26248.1| (AF117431) NADH dehydrogenase [Sorghum timorense] 143 3e-33
pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli ... 143 4e-33
sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 143 4e-33
pir||T13661 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 143 4e-33
sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNI... 143 4e-33
gb|AAF08116.1| (AF130154) NADH dehydrogenase subunit F [Aloysia ... 143 4e-33
emb|CAB65450.1| (AJ236271) NADH dehydrogenase subunit F [Sarrace... 143 4e-33
sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >... 143 6e-33
gb|AAA64199.1| (U21995) NADH dehydrogenase F [Molinia caerulea] 143 6e-33
gb|AAA64201.1| (U21997) NADH dehydrogenase F [Phragmites australis] 143 6e-33
gb|AAD26217.1| (AF117400) NADH dehydrogenase [Cleistachne sorgho... 143 6e-33
gb|AAD26238.1| (AF117421) NADH dehydrogenase [Sorghastrum nutans] 143 6e-33
gb|AAF08110.1| (AF130148) NADH dehydrogenase subunit F [Callicar... 143 6e-33
gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia o... 143 6e-33
gb|AAF27243.1|AF111764_1 (AF111764) NADH dehydrogenase [Corchoru... 143 6e-33
gb|AAF27249.1|AF111771_1 (AF111771) NADH dehydrogenase [Pseudoco... 143 6e-33
gb|AAF73308.1| (AF188850) NADH dehydrogenase subunit B [Zamia fu... 143 6e-33
gb|AAF90041.2| (AF238055) NADH dehydrogenase subunit F [Hydrasti... 143 6e-33
emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 143 6e-33
gi|11466844 NADH dehydrogenase ND5 [Oryza sativa] >gi|128769|sp|... 142 8e-33
gb|AAA64202.1| (U21998) NADH dehydrogenase F [Arundo donax] 142 8e-33
pir||T12298 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 142 8e-33
gb|AAA64702.1| (U21984) NADH dehydrogenase F [Thysanolaena maxima] 142 1e-32
gb|AAA64704.1| (U21986) NADH dehydrogenase F [Panicum virgatum] 142 1e-32
pir||T12226 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 142 1e-32
pir||T12296 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 142 1e-32
pir||T12562 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 142 1e-32
pir||T12563 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 142 1e-32
gb|AAF08111.1| (AF130149) NADH dehydrogenase subunit F [Vitex ag... 142 1e-32
gb|AAF08125.1| (AF130163) NADH dehydrogenase subunit F [Olea eur... 142 1e-32
pir||T13668 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 142 1e-32
gb|AAF27246.1|AF111768_1 (AF111768) NADH dehydrogenase [Triumfet... 142 1e-32
pir||T12564 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 1e-32
pir||T14241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 1e-32
gb|AAD26212.1| (AF117395) NADH dehydrogenase [Bothriochloa bladhii] 141 1e-32
pir||T13702 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
pir||T12565 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
sp|P57264|NUON_BUCAI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 141 2e-32
gb|AAG26149.1| (AF123801) NADH dehydrogenase subunit F [Cabomba ... 141 2e-32
gb|AAG19145.1| (AE005012) F420H2:quinone oxidoreductase chain L;... 141 2e-32
pir||T13470 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
pir||T13567 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
pir||T12556 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
pir||T12560 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
gb|AAF08106.1| (AF130144) NADH dehydrogenase subunit F [Campsis ... 141 2e-32
emb|CAC03500.1| (AJ250387) NADH dehydrogenase subunit [Maurandel... 141 2e-32
pir||T12294 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 140 3e-32
pir||T12567 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 140 3e-32
gb|AAF27222.1|AF111742_1 (AF111742) NADH dehydrogenase [Craigia ... 140 3e-32
gb|AAB37134.1| (U78683) NADH dehydrogenase [Clerodendrum chinense] 140 4e-32
gb|AAF27199.1|AF111719_1 (AF111719) NADH dehydrogenase [Pavonia ... 140 4e-32
gb|AAF44116.1| (AF230257) NADH dehydrogenase [Kostermansia malay... 140 4e-32
pir||T12663 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 140 4e-32
gb|AAA84101.1| (L36395) NADH dehydrogenase subunit [Callicarpa d... 139 5e-32
pir||T13763 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 5e-32
gb|AAF27241.1|AF111762_1 (AF111762) NADH dehydrogenase [Apeiba t... 139 5e-32
gb|AAC03341.1| (AF012845) NADH dehydrogenase [Streptocarpus joha... 139 7e-32
gb|AAF23620.1| (AF188185) NADH dehydrogenase [Halleria lucida] 139 7e-32
gb|AAF27211.1|AF111731_1 (AF111731) NADH dehydrogenase [Ceiba ro... 139 7e-32
gb|AAF44114.1| (AF230255) NADH dehydrogenase [Durio oxleyanus] 139 7e-32
pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M... 139 7e-32
pir||T12125 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 7e-32
pir||T13242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 9e-32
pir||T13373 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 9e-32
pir||T12295 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 9e-32
pir||T12589 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 9e-32
gb|AAF27245.1|AF111767_1 (AF111767) NADH dehydrogenase [Glyphaea... 139 9e-32
pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - N... 139 9e-32
gb|AAF44113.1| (AF230254) NADH dehydrogenase [Cullenia ceylanica] 139 9e-32
sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 138 1e-31
gb|AAB37167.1| (U78709) NADH dehydrogenase [Tinnea zambesiaca] 138 1e-31
gb|AAD52733.1|AF123675_1 (AF123675) NADH dehydrogenase [Angeloni... 138 1e-31
gb|AAF37194.1| (AF190906) NADH dehydrogenase [Martynia annua] 138 1e-31
pir||T13769 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 138 1e-31
pir||S71136 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 138 1e-31
sp|Q9ZD13|NUON_RICPR NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 138 1e-31
sp|P57262|NUOL_BUCAI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 138 2e-31
emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 138 2e-31
pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 137 3e-31
gi|9838450 NADH dehydrogenase subunit 2 [Beta vulgaris] >gi|9087... 137 3e-31
pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 137 3e-31
gi|11467787 subunit 2 of NADH-plastoquinoneoxidoreductase [Nephr... 137 3e-31
gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1] 137 3e-31
gb|AAF08167.1| (AF130211) NADH dehydrogenase subunit F [Phlox dr... 136 4e-31
pir||D81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 136 4e-31
gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Protothec... 136 6e-31
sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 136 6e-31
gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea] >gi... 136 6e-31
pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli >... 136 8e-31
gi|11465871 NADH dehydrogenase subunit 2 [Ochromonas danica] >gi... 136 8e-31
pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 135 1e-30
gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesos... 135 1e-30
emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 135 1e-30
gi|11467054 NADH dehydrogenase, subunit 5 [Acanthamoeba castella... 134 2e-30
pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 AP... 133 4e-30
gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M;... 132 7e-30
sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 132 7e-30
gb|AAF37197.1| (AF191808) NADH dehydrogenase subunit F [Carex di... 132 9e-30
pir||D83315 NADH dehydrogenase I chain L PA2647 [imported] - Pse... 132 9e-30
pir||B71640 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 131 2e-29
pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 131 2e-29
gi|6137788 NADH dehydrogenase subunit 5 [Metridium senile] >gi|3... 131 3e-29
pir||T06259 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 131 3e-29
pir||A42491 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 130 4e-29
gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideu... 130 4e-29
gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesos... 129 6e-29
gi|5835676 NADH dehydrogenase subunit 5 [Artibeus jamaicensis] >... 129 1e-28
pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0... 129 1e-28
gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephr... 129 1e-28
gi|5834950 NADH dehydrogenase subunit 5 [Bos taurus] >gi|128778|... 128 2e-28
gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU... 127 2e-28
pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pse... 127 3e-28
gi|5835746 NADH dehydrogenase subunit 5 [Chrysemys picta] >gi|75... 127 4e-28
pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 126 5e-28
gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile] >gi|3... 126 5e-28
sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 126 5e-28
emb|CAC08261.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 126 5e-28
pir||S42820 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 126 6e-28
gi|5835048 NADH dehydrogenase subunit 5 [Didelphis virginiana] >... 126 6e-28
gi|5836013 NADH dehydrogenase subunit 5 [Chelonia mydas] >gi|510... 125 8e-28
sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 125 1e-27
gi|5835884 NADH dehydrogenase subunit 5 [Ceratitis capitata] >gi... 125 1e-27
pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317... 125 1e-27
gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana] >gi|668... 125 1e-27
gi|5835564 NADH dehydrogenase subunit 5 [Ovis aries] >gi|6093580... 124 2e-27
gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus ... 124 2e-27
pir||DENTN4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 123 3e-27
gi|5835118 NADH dehydrogenase subunit 5 [Equus caballus] >gi|135... 123 3e-27
sp|P06262|NU4C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 123 3e-27
gi|11466015 NADH dehydrogenase ND4 subunit [Nicotiana tabacum] >... 123 3e-27
pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 123 3e-27
pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 123 4e-27
gi|5835356 NADH dehydrogenase subunit 5 [Equus asinus] >gi|31225... 122 1e-26
pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 121 2e-26
gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU... 120 3e-26
sp|P50368|NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 119 6e-26
sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 119 8e-26
pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 118 2e-25
pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (... 117 2e-25
gi|5835472 NADH dehydrogenase subunit 5 [Balanoglossus carnosus]... 117 2e-25
emb|CAB67220.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 117 3e-25
gi|10864682 NADH dehydrogenase subunit 5 [Gonostoma gracile] 117 3e-25
gi|5835077 NADH dehydrogenase subunit 5 [Petromyzon marinus] >gi... 116 4e-25
gi|5835216 NADH dehydrogenase subunit 5 [Felis catus] >gi|135258... 116 4e-25
prf||2210305M NADH dehydrogenase:SUBUNIT=6 [Felis catus] 116 4e-25
prf||2210305N cytochrome b [Felis catus] 116 4e-25
gi|11466847 NADH dehydrogenase ND4 [Oryza sativa] >gi|128732|sp|... 116 7e-25
gb|AAF78607.1|AF260826_6 (AF260826) NADH subunit 5 [Cochliomyia ... 116 7e-25
gi|11467255 NADH dehydrogenase ND4 [Zea mays] >gi|1171814|sp|P11... 115 9e-25
gb|AAF77284.1| (AF200832) NADH dehydrogenase subunit 5 [Drosophi... 114 2e-24
gb|AAF77298.1| (AF200833) NADH dehydrogenase subunit 5 [Drosophi... 114 2e-24
pir||QXZM4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 ... 113 4e-24
gb|AAF77271.1| (AF200831) NADH dehydrogenase subunit 5 [Drosophi... 113 4e-24
gb|AAF77377.1| (AF200839) NADH dehydrogenase subunit 5 [Drosophi... 113 4e-24
gb|AAF77415.1| (AF200842) NADH dehydrogenase subunit 5 [Drosophi... 113 4e-24
gb|AAF77441.1| (AF200844) NADH dehydrogenase subunit 5 [Drosophi... 113 4e-24
gi|5834868 NADH dehydrogenase subunit 5 [Phoca vitulina] >gi|128... 113 5e-24
gb|AAF77259.1| (AF200830) NADH dehydrogenase subunit 5 [Drosophi... 113 5e-24
emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare] 113 6e-24
gi|11499413 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuo... 112 8e-24
gb|AAB33356.1| (S76764) NADH dehydrogenase subunit 5, ND5 [Droso... 111 1e-23
pir||S50343 ND5 protein - fruit fly (Drosophila simulans) mitoch... 111 1e-23
gi|11499415 F420H2:quinone oxidoreductase, 43.2 kDa subunit, put... 111 1e-23
emb|CAB91058.1| (AJ400907) NADH dehydrogenase subunit 5 [Drosoph... 111 1e-23
gb|AAF77233.1| (AF200828) NADH dehydrogenase subunit 5 [Drosophi... 111 1e-23
gb|AAF77251.1| (AF200829) NADH dehydrogenase subunit 5 [Drosophi... 111 1e-23
gi|5835241 NADH dehydrogenase subunit 5 [Drosophila melanogaster... 110 3e-23
gb|AAA69710.1| (M37275) NADH dehydrogenase 5 [Drosophila melanog... 110 3e-23
gi|11497457 NADH dehydrogenase (ubiquinone), subunit 4 [Protothe... 110 4e-23
sp|P03913|NU4M_ASPAM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|... 109 5e-23
pir||T13877 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 108 2e-22
gi|5835688 NADH dehydrogenase subunit 5 [Ixodes hexagonus] >gi|7... 108 2e-22
gi|11466208 NADH dehydrogenase subunit 4 [Naegleria gruberi] >gi... 107 4e-22
gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina] >gi... 106 6e-22
pir||S41639 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 103 5e-21
prf||1204259B URF5 [Chlamydomonas reinhardtii] 103 5e-21
gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]... 102 1e-20
pir||T07684 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 101 2e-20
gb|AAG12226.1| (AF163460) NADH dehydrogenase subunit F [Kobresia... 101 2e-20
sp|Q04050|NU4M_BRACM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|... 95 2e-18
pir||S43882 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 95 2e-18
emb|CAA69742.3| (Y08501) NADH dehydrogenase subunit 4 [Arabidops... 95 2e-18
gi|9838467 NADH dehydrogenase subunit 4 [Beta vulgaris] >gi|9087... 94 3e-18
sp|P57263|NUOM_BUCAI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 90 5e-17
pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 89 2e-16
pir||H70374 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 85 2e-15
dbj|BAA87010.1| (AB027582) NADH dehydrogenase subunit 5 [Pharmac... 81 3e-14
dbj|BAA28185.1| (AB013145) NADH dehydrogenase subunit 5 [Byasa a... 79 1e-13
gi|11499414 F420H2:quinone oxidoreductase, 72.4 kDa subunit (nuo... 79 1e-13
pir||T11687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 78 2e-13
dbj|BAA87007.2| (AB027579) NADH dehydrogenase subunit 5 [Parides... 78 3e-13
sp|P39755|NDHF_BACSU NADH DEHYDROGENASE SUBUNIT 5 (NADH-UBIQUINO... 76 7e-13
dbj|BAA87011.1| (AB027583) NADH dehydrogenase subunit 5 [Byasa a... 76 7e-13
dbj|BAA87022.1| (AB027594) NADH dehydrogenase subunit 5 [Troides... 76 9e-13
dbj|BAA87026.1| (AB027598) NADH dehydrogenase subunit 5 [Ornitho... 76 9e-13
dbj|BAA87024.1| (AB027596) NADH dehydrogenase subunit 5 [Ornitho... 76 1e-12
dbj|BAA87031.1| (AB027603) NADH dehydrogenase subunit 5 [Ornitho... 76 1e-12
dbj|BAA87008.2| (AB027580) NADH dehydrogenase subunit 5 [Parides... 76 1e-12
dbj|BAA87020.2| (AB027592) NADH dehydrogenase subunit 5 [Troides... 76 1e-12
dbj|BAA87016.1| (AB027588) NADH dehydrogenase subunit 5 [Pachlio... 75 1e-12
gi|5835475 NADH dehydrogenase subunit 2 [Balanoglossus carnosus]... 75 2e-12
dbj|BAA87004.1| (AB027576) NADH dehydrogenase subunit 5 [Euryade... 75 3e-12
dbj|BAA87018.1| (AB027590) NADH dehydrogenase subunit 5 [Pachlio... 74 3e-12
dbj|BAA87015.1| (AB027587) NADH dehydrogenase subunit 5 [Losaria... 74 4e-12
dbj|BAA87021.1| (AB027593) NADH dehydrogenase subunit 5 [Troides... 74 4e-12
dbj|BAA87009.1| (AB027581) NADH dehydrogenase subunit 5 [Parides... 73 7e-12
dbj|BAA87014.1| (AB027586) NADH dehydrogenase subunit 5 [Atropha... 73 7e-12
dbj|BAA87017.1| (AB027589) NADH dehyrogenase subunit 5 [Pachliop... 71 3e-11
dbj|BAA87019.1| (AB027591) NADH dehydrogenase subunit 5 [Pachlio... 71 3e-11
>pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi (strain
Orsay) >gi|5458134|emb|CAB49623.1| (AJ248285) NADH
DEHYDROGENASE I N SUBUNIT [Pyrococcus abyssi]
Length = 493
Score = 958 bits (2449), Expect = 0.0
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPII 60
MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPII
Sbjct: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPII 60
Query: 61 IMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
IMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG
Sbjct: 61 IMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
Query: 121 ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVAL 180
ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVAL
Sbjct: 121 ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVAL 180
Query: 181 LYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPI 240
LYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPI
Sbjct: 181 LYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPI 240
Query: 241 TVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
TVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM
Sbjct: 241 TVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKF 360
IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKF
Sbjct: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKF 360
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA
Sbjct: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
Query: 421 VYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFAVA 480
VYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFAVA
Sbjct: 421 VYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFAVA 480
Query: 481 NYVKNVPLMGVIQ 493
NYVKNVPLMGVIQ
Sbjct: 481 NYVKNVPLMGVIQ 493
>pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii
>gi|3257876|dbj|BAA30559.1| (AP000006) 495aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 495
Score = 869 bits (2220), Expect = 0.0
Identities = 426/495 (86%), Positives = 471/495 (95%), Gaps = 2/495 (0%)
Query: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPII 60
MSQVASLLIALPLISAFFVPVLK+IK+SLI PYL LITL+QTGIAGWVFYEVYTTGKPI+
Sbjct: 1 MSQVASLLIALPLISAFFVPVLKQIKKSLIFPYLTLITLLQTGIAGWVFYEVYTTGKPIL 60
Query: 61 IMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
I AGGWRPPVGINLYIGPFAALF+LIIA+VSF+T++FS++ VKVEPIDKYAMLFLLLMLG
Sbjct: 61 IYAGGWRPPVGINLYIGPFAALFILIIAIVSFLTSLFSMRMVKVEPIDKYAMLFLLLMLG 120
Query: 121 ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVAL 180
ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKY++LGGIGSSFFLIGVAL
Sbjct: 121 ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYMILGGIGSSFFLIGVAL 180
Query: 181 LYGATGTLNMAHLAELSTS--INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPH 238
+YG TGTLNMA LAE +++ I P+VAQVGL+L+IFGLAVEAELFPLNAWAPDAYQAAPH
Sbjct: 181 IYGVTGTLNMAQLAEFASAGKIMPVVAQVGLSLIIFGLAVEAELFPLNAWAPDAYQAAPH 240
Query: 239 PITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
PITVMFSAFVVKAGLYAMARILYLLQK NGW SVL+L+LIMATLTVIFAELSALRQ+DVK
Sbjct: 241 PITVMFSAFVVKAGLYAMARILYLLQKVNGWDSVLKLLLIMATLTVIFAELSALRQKDVK 300
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELE 358
RMIAYSSIGQ+GLIALAFSLGTQAGVDAGVFHMLNHAIVK MMFLGVGYVG+ +GGT +E
Sbjct: 301 RMIAYSSIGQVGLIALAFSLGTQAGVDAGVFHMLNHAIVKTMMFLGVGYVGVMVGGTRIE 360
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
F GLGKRMPLTAL+L++GA+STVGVPLFNVFWSKFRIIVAT+QAGF+WPA+LVLFAS+V
Sbjct: 361 DFRGLGKRMPLTALSLSVGAISTVGVPLFNVFWSKFRIIVATIQAGFVWPAVLVLFASVV 420
Query: 419 EAVYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFA 478
EAVYYFRL+H MWF+G GER+KEGWIV+FLLLLA+++V IGIYPTP WEIVKRAGSDIFA
Sbjct: 421 EAVYYFRLLHVMWFAGEGERIKEGWIVVFLLLLALIIVGIGIYPTPVWEIVKRAGSDIFA 480
Query: 479 VANYVKNVPLMGVIQ 493
V Y+ NVPL+GV+Q
Sbjct: 481 VKVYINNVPLLGVVQ 495
>pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abyssi (strain
Orsay) >gi|5458884|emb|CAB50371.1| (AJ248287)
NADH-dehydrogenase related [Pyrococcus abyssi]
Length = 499
Score = 292 bits (740), Expect = 5e-78
Identities = 168/472 (35%), Positives = 275/472 (57%), Gaps = 19/472 (4%)
Query: 4 VASLLIALPLISAFFVPVLKRI---KQSLIMPYLIL---ITLIQTGIAGWVFYEVYTTGK 57
V L +PL+ AF +P+ + + +I Y +L +TLI T +F Y++
Sbjct: 3 VVGLTPIIPLVFAFALPLFSVVVGGNRKIIQAYALLGTGLTLISTFK---LFQLTYSSSL 59
Query: 58 PIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKYAMLFLL 116
PI+ G WR P+GI + ++L L+ AV+ F+ A++S + ++ E ++ Y L+L
Sbjct: 60 PIVYTFGKWRAPIGIVYEVDRLSSLIALVTAVLMFLIAIYSYRYLEREKGLEWYYTLYLG 119
Query: 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTA-YNKTGEAAEASMKYIVLGGIGSSFFL 175
L G G++ TGD FNLFV +E+T+I AYAL Y ++ A +KY ++G +G++ +
Sbjct: 120 LESGLLGVLLTGDAFNLFVMIEVTSIAAYALVMFYRDRKDSVLAGLKYALIGAVGTTMYF 179
Query: 176 IGVALLYGATGTLNMAHLAE-LSTSINPIVAQ-VGLALVIFGLAVEAELFPLNAWAPDAY 233
+ + + YG GT+N A L+E L +S N ++A V L L + ++A +FP + W P+A+
Sbjct: 180 LALGVFYGTFGTVNFADLSEKLHSSGNVVLASSVALVLATWAFLIKATIFPNHFWLPEAH 239
Query: 234 QAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGW--SSVLRLVLIMATLTVIFAELSA 291
AAP PI+ + S VV G+YAM R LY L W + ++I+ ++ IF L
Sbjct: 240 PAAPSPISAILSGLVVNVGVYAMIRFLYTLYSGLSWIIGWLSFAIIILGAISSIFGALMM 299
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
QRDVKR++AYS+I +G + +A +GTQ G+ A +FH++NHAI KA++FL VG
Sbjct: 300 NTQRDVKRLVAYSTIMHMGYLLMAVGVGTQLGLQAALFHLINHAIAKALLFLAVGVFIHV 359
Query: 352 LGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAIL 411
G ++ GLG++MP+T +L I +S VG+P NVF+SK + A L+ F + A++
Sbjct: 360 AGSRNIDDLAGLGRKMPITTFSLAIATLSLVGIPPLNVFFSKLLLFNALLEKSF-FLALV 418
Query: 412 VLFASMVEAVYYFRLVHTMWFSGSGE--RVKEG-WIVIFLLLLAVLVVAIGI 460
+ S++ V Y R+++T+W E VKE + + L+LA++ +AIG+
Sbjct: 419 IAVTSVIALVAYMRVLYTLWLGKPREDLDVKESISMSMICLILALICIAIGL 470
>pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii
>gi|3257855|dbj|BAA30538.1| (AP000006) 510aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 510
Score = 273 bits (691), Expect = 3e-72
Identities = 182/512 (35%), Positives = 288/512 (55%), Gaps = 39/512 (7%)
Query: 8 LIALPLISAFFVPVLKRIKQSL--IMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGG 65
+I +PL AF +P++ +K I +I T + GI VF EV+ G I+ G
Sbjct: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFTTLMVGIQ--VFREVWNRGT-IVYALGS 63
Query: 66 WRP------PVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKYAMLFLLLM 118
P P+ I + F A+ VLII +VSF+ ++S++ +K + ++KY L L+L
Sbjct: 64 ETPFGKANFPIRIVWEVDKFGAIMVLIITLVSFLAVLYSIEYMKHDTGLEKYYTLILILE 123
Query: 119 LGATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLIG 177
LG G+ TGDIFN +VF+EI +I +YAL A+ N T EA EA +KY+ +G + SS L+G
Sbjct: 124 LGMLGIAITGDIFNFYVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSLVLLG 183
Query: 178 VALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAP 237
+ALLYG GTL M +LA + IVA++ L+L + GL ++ P++ W DA+ AAP
Sbjct: 184 IALLYGQYGTLTMGYLAVKMSENPTIVAKIALSLFLGGLLFKSGASPVHMWLADAHPAAP 243
Query: 238 HPITVMFSAFVVK-AGLYAMARILY-LLQKANGWSSVLRLVLIMATLTVIFAELSALRQR 295
I+ M S V+K G+YA+AR+++ + A ++V LV+I A +T+I A+ Q
Sbjct: 244 SSISAMLSGLVIKVGGIYAIARVVFSIFLPAINLATVGWLVIIFACITLIVGNAMAVVQE 303
Query: 296 DVKRMIAYSSIGQIGLIALAFSLGTQA--------GVDAGVFHMLNHAIVKAMMFLGVGY 347
D+KR++AYSS+GQIG I L +G A + ++H++NHA++KA++FL G
Sbjct: 304 DMKRLLAYSSVGQIGYILLGLGIGMVAYGSKIGELALAGAIYHIVNHAMMKALLFLVAGA 363
Query: 348 VGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIW 407
V LG L + GL K MP T A IGA + VG+P N F SK+ I ++ I
Sbjct: 364 VLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPII 423
Query: 408 PAILVLFASMVEAVYYFRLVHTMWFSGSGERVKE-----GWIVIFLLLLAVLVVAIGIYP 462
+I ++ + A Y R++ T +F E+V ++I + +L + ++ +GI+P
Sbjct: 424 GSIAIIGTAFCTAA-YVRVLFT-FFGRPNEKVMRAKDPGALMLIPMFILVIAIILMGIFP 481
Query: 463 TPAWEIVKR----AGSDIFAVANYVKNVPLMG 490
W+I + A +++ + +YV + LMG
Sbjct: 482 ---WQISDKIMIPAARNLWDITSYV--MTLMG 508
>pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Pyrococcus abyssi
(strain Orsay) >gi|5458150|emb|CAB49639.1| (AJ248285)
CO-induced hydrogenase related, subunit M [Pyrococcus
abyssi]
Length = 510
Score = 267 bits (676), Expect = 2e-70
Identities = 174/510 (34%), Positives = 284/510 (55%), Gaps = 35/510 (6%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
+I +PL AF +P++ +K + +I+ + VF EV++ G I+ G
Sbjct: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGT-IVYALGSET 65
Query: 68 P------PVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKYAMLFLLLMLG 120
P P+ I + F A+ VLII VSF+ ++S++ +K + ++KY L L+L LG
Sbjct: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
Query: 121 ATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLIGVA 179
G+ TGDIFN +VF+EI +I +YAL A+ + T E EA +KY+ +G + SSF L+G+A
Sbjct: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
Query: 180 LLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHP 239
LLYG GTL M +LA + IVA++ LAL + GL ++ P++ W DA+ AAP
Sbjct: 186 LLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
Query: 240 ITVMFSAFVVK-AGLYAMARILY-LLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDV 297
I+ M S V+K G+YA+AR+++ + A ++V +++I A +T+I A+ Q D+
Sbjct: 246 ISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDM 305
Query: 298 KRMIAYSSIGQIGLIALAFSLGTQA--------GVDAGVFHMLNHAIVKAMMFLGVGYVG 349
KR++AYSS+GQIG I L +G A + ++H +NHA++KA++FL G V
Sbjct: 306 KRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVL 365
Query: 350 ITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPA 409
LG L + GL K MP T A IGA + VG+P N F SK+ I ++ + A
Sbjct: 366 HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGA 425
Query: 410 ILVLFASMVEAVYYFRLVHTMWFSGSGERVKE-----GWIVIFLLLLAVLVVAIGIYPTP 464
I ++ + A Y R++ T +F E+V + +++ + +L + ++ +G++P
Sbjct: 426 IAIIGTAFCTAA-YVRVLFT-FFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP-- 481
Query: 465 AWEIVKR----AGSDIFAVANYVKNVPLMG 490
W+I + A ++ + YV + LMG
Sbjct: 482 -WQISDKFMVPAAKSLWDIMGYV--ISLMG 508
>gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; NdhG2 [Halobacterium
sp. NRC-1]
Length = 380
Score = 235 bits (593), Expect = 9e-61
Identities = 123/322 (38%), Positives = 191/322 (59%), Gaps = 5/322 (1%)
Query: 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFF 174
+LL+ G +GM T D+FN++VF+EIT +TAYAL A + + A++KY+++G G+S F
Sbjct: 1 MLLVAGLSGMTVTADLFNMYVFLEITGLTAYALVAAGEDSRSTVAALKYLLVGTFGASLF 60
Query: 175 LIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQ 234
L+G+ Y TGTLNMA LA +P++AQ AL++ GL ++ +FPL+ W PDAY
Sbjct: 61 LLGIGYAYVGTGTLNMADLAAKLADADPVLAQAAFALIVVGLFIKVAVFPLHTWQPDAYA 120
Query: 235 AAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSS--VLRLVLI-MATLTVIFAELSA 291
AP ++ + SA V YA+ R++Y + A S V R +LI A ++++ L A
Sbjct: 121 GAPDTVSALISALVSTVAAYALLRVVYTVFGAGFLDSTPVARAILIGGAVVSIVAGSLLA 180
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
+ Q ++KR++AYSS+ Q GLI A ++G + H++ HA++K +FL G V
Sbjct: 181 VSQSEIKRVLAYSSVSQFGLILAAIAIGNDTALTGAAIHLVGHAVMKGGLFLTAGVVATE 240
Query: 352 LGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAIL 411
G +++F+GL R P+ A A + AVS VGVP F K+ I + +AG W +
Sbjct: 241 TGARTIDEFDGLADRSPVAAGAFGVLAVSMVGVPPTVGFAGKWYIAIGAAEAG-SWALLA 299
Query: 412 VLFAS-MVEAVYYFRLVHTMWF 432
V+ AS ++ Y+ RLV M+F
Sbjct: 300 VIVASTLLTLAYFLRLVERMFF 321
>pir||T51314 probable CO-induced hydrogenase complex chain CooM [imported] -
Rhodospirillum rubrum >gi|1515466|gb|AAC45116.1|
(U65510) CooM [Rhodospirillum rubrum]
Length = 1265
Score = 233 bits (589), Expect = 3e-60
Identities = 136/414 (32%), Positives = 228/414 (54%), Gaps = 15/414 (3%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKV-EPIDKYAMLFLLLMLGAT-GMIAT 127
V L G LF LI A + V+SV +K +++Y FL LM+G+ G+ T
Sbjct: 269 VAARLESGDLGGLFALIFAAIGLAVTVYSVGYMKHGHGVNRY-FFFLFLMIGSLIGVATT 327
Query: 128 GDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGT 187
+ N ++F E+ +Y L + +T +A +A MKY ++ G+ G+ +L+ GT
Sbjct: 328 NHLGNFYLFWELMTWMSYLLVIHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGT 387
Query: 188 LNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAF 247
++ +A +++P +A V LA + G +A LFPL +W P+A+ AP I+ S
Sbjct: 388 FEISEIAPCIGTLSPALAGVVLATFLIGFMAKAGLFPLYSWLPEAHPVAPSSISGPMSGI 447
Query: 248 VVKAGLYAMARILYLLQKAN---------GWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
+ KAG+ M ++L+ + G S +++ + +T++ E+ A RQ D+K
Sbjct: 448 LTKAGILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQAYRQTDIK 507
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELE 358
R++AYS++ QIG I + +GT + G+FH+ NHA++K M+F VG + + G L+
Sbjct: 508 RLLAYSTLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFAVGALILRSAGRSLD 567
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
+GLGK MP T L L IG ++ +GVP F F SKF +I A ++AG + A ++L S++
Sbjct: 568 DLKGLGKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAVILVGSVI 627
Query: 419 EAVYYFRLVHTMWFSG-SGERVKEGWIVIFLLL--LAVLVVAIGIYPTPAWEIV 469
A+YY R++ ++F +G +V E + + + L LA +VV G+YP A +V
Sbjct: 628 GALYYARVLRAVFFEPYTGPKVVEAPLTMRIALGALAGVVVFTGVYPDAALSVV 681
Score = 180 bits (451), Expect = 4e-44
Identities = 127/446 (28%), Positives = 215/446 (47%), Gaps = 26/446 (5%)
Query: 52 VYTTGKPIIIMAGGWRPPV------GINLYIGPFAAL---FVLIIAVVSFITAVFSVKAV 102
VY GK ++AG V GI + G + L F +I VV I ++S+ +
Sbjct: 720 VYILGKRSTVVAGSLSVAVMALALAGILIQSGRYDLLSFWFAALIVVVGAINLLYSIGYM 779
Query: 103 KVEPIDKYAMLFLLLMLGAT-GMIATGDIFNLFVFMEI-TAITAYALTAYNKTGEAAEAS 160
F ++M+G G+ A+ D+FN F F E+ ++ T Y + + +T ++ +
Sbjct: 780 AHGHAQNRFFFFFVMMIGGLLGVTASDDLFNFFAFWEVMSSWTLYLVIIHEETKDSLDEG 839
Query: 161 MKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEA 220
KY + +G+SF +GVA+L GT MA L + + S+ V L++ GL ++A
Sbjct: 840 TKYFIFNFVGASFLFLGVAILAAKAGTFEMALLPQAALSMPVGWLAVSAGLILAGLLMKA 899
Query: 221 ELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSV-------- 272
PL AP P++ SA ++K G Y + +I+ L G + +
Sbjct: 900 AQLPLRIDYQMHPAPAPTPVSGYISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMP 959
Query: 273 --LRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFH 330
L +V ++A LTV++A A+ Q VKR++ YS++ Q+G + L SLG+ GV G+ H
Sbjct: 960 DPLVVVQVIAALTVLYAGAMAVVQNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMH 1019
Query: 331 MLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVF 390
+NH ++K ++FL G + L+ GLG++MP+T +S G+P FN F
Sbjct: 1020 FVNHMMLKDILFLAAGCILAQAHVHSLDDLGGLGRKMPITFGLFLFAGLSLSGIPPFNGF 1079
Query: 391 WSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMW---FSGSGERVKEG--WIV 445
SK+ I Q G A+ L +S+ + H+ + S + ++E ++
Sbjct: 1080 ASKWLIYQGAFQGGHYLLAMAALMSSLFTLAAVLKFTHSAFLGPLSPAAATMREAPPVML 1139
Query: 446 IFLLLLAVLVVAIGIYPTPAWEIVKR 471
I + LLA V +G++P A + R
Sbjct: 1140 IPMGLLAAGSVIVGVFPGVALVPISR 1165
Score = 83.9 bits (204), Expect = 4e-15
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 280 ATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKA 339
A L +I L+ RD+ RM+ YS+I +IG + + +GT AG V H+ AI++A
Sbjct: 12 AALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAAGETGAVMHLGYQAIMRA 71
Query: 340 MMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
++ + ++ G ++L+ G +RMP +L G S +G+ F +SKF I+ A
Sbjct: 72 LVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPFKGSFSKFVILYA 131
Query: 400 TLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIVIF---------LLL 450
++ G+ A + AS++ A YY + + F + + F +++
Sbjct: 132 AIENGYWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFFQIPVGQLPIVV 191
Query: 451 LAVLVVAIGIYPTP 464
LA++ V + + P P
Sbjct: 192 LALVTVVMSLDPDP 205
>dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]
Length = 498
Score = 233 bits (587), Expect = 5e-60
Identities = 146/496 (29%), Positives = 258/496 (51%), Gaps = 16/496 (3%)
Query: 2 SQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
S + L + +P+I+A + + K+ +I Y+ L + T +A + PI +
Sbjct: 4 SNMLVLTLVIPVITAILLVFIG--KRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRV 61
Query: 62 MAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLF--LLLML 119
G W+ P I + F+AL ++ +++ I ++S + + +E ++Y F L +++
Sbjct: 62 ELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIER-ERYYYYFSVLFMLI 120
Query: 120 GATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVA 179
G G TGDIFNLFVF E+ +++Y L T + ++KY+++ + SSFF++GVA
Sbjct: 121 GIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVA 180
Query: 180 LLYGATGTLNMAH----LAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQA 235
+LY GTLN+A LA LS + +V + L IF A +A +FP+ W P AY A
Sbjct: 181 ILYSVVGTLNLADISNKLANLSAHDSGLV-NIVFILFIFVFATKAGVFPMFVWLPSAYYA 239
Query: 236 APHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQR 295
P PI F A + K G+YA+AR L L N S ++L +A LT+IF + A+
Sbjct: 240 PPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHY-VILFLALLTIIFGCVGAVAYA 298
Query: 296 DVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGT 355
++K++I Y+ + +G+I + ++ T++G+ +++ L+ +VK +FL +G + G
Sbjct: 299 NIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTA 358
Query: 356 ELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
+L +F GL KR P+ + I A+S G+P + F+ KF I+ +T + GF ++VL +
Sbjct: 359 DLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLS 418
Query: 416 SMVEAVYYFRLVHTMWFS-----GSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVK 470
S+V R+ +F +V ++ ++ V+ V G+ + +VK
Sbjct: 419 SLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVK 478
Query: 471 RAGSDIFAVANYVKNV 486
+ + YVK V
Sbjct: 479 AGAETFYNPSTYVKAV 494
>pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657544|gb|AAF96068.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 498
Score = 228 bits (576), Expect = 9e-59
Identities = 126/446 (28%), Positives = 231/446 (51%), Gaps = 15/446 (3%)
Query: 52 VYTTGKPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKY 110
+YT G P I G W P GI + V++ A++ ++ ++++ + +P +Y
Sbjct: 52 IYTHG-PASIAFGQWPAPFGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARY 110
Query: 111 AMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIG 170
L +L+ G G TGDIFNL+V+ E+ I ++ L + + + ++KY++L I
Sbjct: 111 HALLHVLLAGVYGAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLIS 170
Query: 171 SSFFLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
+ FL+ + LLYGATGTLN+A L + + S+ P + + L++F +++A LFPL AW P
Sbjct: 171 TLVFLLSIGLLYGATGTLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLP 230
Query: 231 DAYQAAPHPITVMFSAFVVKAGLYAMARILYLL--QKANGWSSVLRLVLIMATLTVIFAE 288
+Y P I +F+A + K G+YA+ R+ L+ +GW VL L +A LT++
Sbjct: 231 ASYHTLPSAIVALFAALLTKVGVYALLRVFTLVFPLDGSGWQPVL---LGIAALTMLTGV 287
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV 348
L A Q D+K+++++ I QIG + + ++ T + +F++++H +VK +FL G +
Sbjct: 288 LGAASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFLIGGLI 347
Query: 349 GITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWP 408
G G T+L + G+ + MP + A S G P + FW KF +I A+L A W
Sbjct: 348 GRKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWL 407
Query: 409 AILVLFASMVEAVYYFRLVHTMWFSGSGERVKE--------GWIVIFLLLLAVLVVAIGI 460
A + L ++ ++ + +++ + +++ G + +L+L + + IG+
Sbjct: 408 AAIALLVGLLTIFSMTKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTLFSLVIGL 467
Query: 461 YPTPAWEIVKRAGSDIFAVANYVKNV 486
P ++ A + Y+ V
Sbjct: 468 AAQPFYQFATLAAEQLLTPTAYIHAV 493
>gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH regulation related protein D
[Bacillus firmus]
Length = 493
Score = 217 bits (546), Expect = 3e-55
Identities = 152/504 (30%), Positives = 252/504 (49%), Gaps = 32/504 (6%)
Query: 1 MSQVASLLIALP-LISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPI 59
M+ + L I +P ++ +F + K ++ ++ ++ I ++ +VY G +
Sbjct: 1 MNNLVILPILIPFIVGSFLILFAKHHSLQRVISGFAVVGMLLVSI--YLAVDVYQNGITV 58
Query: 60 IIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAM--LFLLL 117
+ + G W+ P GI L FA + V++ ++V + F+ + + E +KY + L
Sbjct: 59 LEL-GNWQAPFGIVLVADLFATMMVILASIVGVVCLFFAFQTISSER-EKYYFYPFYFFL 116
Query: 118 MLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIG 177
+ G G TGD+FNLFVF E+ I +Y L T S+KY+V+ S F++G
Sbjct: 117 LAGVNGAFLTGDLFNLFVFFEVMLIASYILIVLGGTKYQLRESLKYVVINVFASILFIVG 176
Query: 178 VALLYGATGTLNMAHLA----ELS-TSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
VA +Y TGTLNMA LA EL T + ++A + LV+F A++ LFPL W P +
Sbjct: 177 VAYIYSITGTLNMADLAVKVGELEQTGVLNVIAVI--FLVVF--AMKGGLFPLYFWLPRS 232
Query: 233 YQAAPHPITVMFSAFVVKAGLYAMARILYLLQKAN-GWSSVLRLVLIMATLTVIFAELSA 291
Y P I +F + K G+YA+ R L+ + G++ L +LI+A LT+ F L A
Sbjct: 233 YFGPPAAIAALFGGLLTKVGIYAIMRTFTLIFNHDPGFTHTL--ILILAGLTMFFGVLGA 290
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
+ Q D KR+++Y I Q+G + + + TQ + ++++ +H IVKA +FL G
Sbjct: 291 VSQFDFKRILSYHIISQVGYMVMGLGIYTQLAIAGAIYYIAHHIIVKAALFLFAGATQRI 350
Query: 352 LGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT-LQAGFIWPAI 410
G T+L+K GL K P A I A+S G+P + F+SKF +I+A L +I A+
Sbjct: 351 TGTTDLKKMGGLLKTHPWLAWMFFISAISLAGIPPLSGFFSKFALILAAILNENYIIAAV 410
Query: 411 ------LVLFASMVEAVYYF--RLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYP 462
L LF+ M +Y F HT K G +++ ++ L L + +G
Sbjct: 411 ALAVGLLTLFSMMKIFIYAFWGEQKHT----EEQANFKVGKLLLPIVPLVALTIILGFAA 466
Query: 463 TPAWEIVKRAGSDIFAVANYVKNV 486
P ++ + I Y+++V
Sbjct: 467 EPIFQYSLQVADQILDPTIYIESV 490
>pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (strain MSB8)
>gi|4981764|gb|AAD36286.1|AE001778_7 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 466
Score = 216 bits (544), Expect = 5e-55
Identities = 159/489 (32%), Positives = 246/489 (49%), Gaps = 41/489 (8%)
Query: 6 SLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGG 65
SLL+A+PL++AF K K S ++ L+ + + ++ W G I G
Sbjct: 3 SLLVAVPLLAAFVSLFWK--KASDVLFSLVALFNVIVVLSKWF------PGVVEIHAMGN 54
Query: 66 WRPPVGINLYIGP---FAALFV-LIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGA 121
W+PP GINL + +AAL V LI +VSF+ VE Y +LL+
Sbjct: 55 WKPPFGINLVLDDASFYAALIVNLIFLMVSFLP---------VETKKGYETSLMLLLGAT 105
Query: 122 TGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALL 181
G + TGD+FN FVFMEI ITA A + A KY++LGGI SF+L+
Sbjct: 106 NGFVLTGDLFNSFVFMEIITITAVTTAAKRENFYNA---YKYLILGGIAGSFYLLATIFA 162
Query: 182 YGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
YGATG+LNMAH+A + S + ++A L + GL VEA+LFPLN W P Y
Sbjct: 163 YGATGSLNMAHIAMVGLSGSSLLAVTMLYTI--GLGVEAKLFPLNGWVPGVYGGNEVSPI 220
Query: 242 VMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
V+ +A V A LY + R+ + +G L + +++ +T++ E++ALR+ + R
Sbjct: 221 VLGTA-VSFAALYMLGRLFGTVFHGSG----LNTLYVLSLVTILTGEMAALRESRLLRTF 275
Query: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFE 361
AYSS+ Q G++A S GT+ ++ FH+ N I K ++FL G++ +
Sbjct: 276 AYSSVAQAGVVAAMISKGTENALNLAYFHLTNDVIAKFVIFLVAGFLVYS-----YRDLN 330
Query: 362 GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQA-GFIWPAILVLFASMVEA 420
G+ ++ L ++ ++ S VG P+F F SK R+I+ F++PA+L L A+ +E
Sbjct: 331 GVFRKHKLLGISFSMATFSLVGFPMFAGFQSKIRMIMEAFSTKDFLFPAVL-LIATAIEV 389
Query: 421 VYYFRLVHTMWFSGS--GERVKEGWIV-IFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIF 477
Y R +WF ER K + F LA+L+V + + P E ++ +
Sbjct: 390 GYVIRWNVRLWFEEETFEERSKVPLTIGFFSFALAILLVVVFLQPDVFLEGTQKMAKALL 449
Query: 478 AVANYVKNV 486
+YV V
Sbjct: 450 DTESYVNGV 458
>dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 493
Score = 213 bits (538), Expect = 3e-54
Identities = 154/504 (30%), Positives = 243/504 (47%), Gaps = 32/504 (6%)
Query: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYE---VYTTGK 57
MS + L I LP I F+ + K I +L IT++ G+ + FY VY G
Sbjct: 1 MSNLVILPILLPFIVGSFLILFA--KHHGIQRFLTAITMV--GLLLFSFYLATLVYQEGI 56
Query: 58 PIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLF-LL 116
+ G W P GI L FA + +++ ++V F+ + + E Y F L
Sbjct: 57 -YTLQLGNWPAPFGIVLVADMFATMMIILSSIVGVACLFFAFQTISSERERYYFYPFYLF 115
Query: 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLI 176
L+ G G TGD+FNLFVF E+ I +YAL T S KY+V+ S F++
Sbjct: 116 LIAGVNGAFLTGDLFNLFVFFEVMLIASYALIVLGGTKYQLRESFKYVVINVFASILFIV 175
Query: 177 GVALLYGATGTLNMAHLA------ELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
GVA LY TGTLN A LA E +N I L LV+FG+ + LFPL W P
Sbjct: 176 GVAYLYSVTGTLNFADLAIRVAELEQQGVLNVIAI---LFLVVFGM--KGALFPLYFWLP 230
Query: 231 DAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
+Y P I +F + K G+YA+ R L+ + S ++L +A T+ F L
Sbjct: 231 RSYYGPPAAIAALFGGLLTKVGIYAIIRTFTLIFNHDP-SFTHTIILALAGFTMFFGVLG 289
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGI 350
A+ Q D KR+++Y I Q+G + + + T + ++++ +H IVKA +FL G
Sbjct: 290 AVSQFDFKRILSYHIISQVGYMVMGLGIFTPLALAGAIYYIAHHIIVKAALFLFAGATEK 349
Query: 351 TLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAI 410
G TEL+K GL K P A I A+S G+P + F+SKF +I+A + G +
Sbjct: 350 ITGTTELKKMGGLLKTHPWLAWLFFISAISLAGIPPLSGFFSKFALILAGFEEG---RYV 406
Query: 411 LVLFASMVEAVYYFRLVHTMWFSGSGE--------RVKEGWIVIFLLLLAVLVVAIGIYP 462
+V A +V + F ++ ++ GE ++ G +++ + L VL + +G
Sbjct: 407 IVTVALIVGLLTLFSMMKIFIYAFWGEQKHTEQQAKMPIGKLLLPIAPLVVLTIVLGFGA 466
Query: 463 TPAWEIVKRAGSDIFAVANYVKNV 486
P ++ + ++ + Y+++V
Sbjct: 467 EPIFQYSLQVADELLNPSVYIESV 490
>pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacillus subtilis
>gi|2635659|emb|CAB15152.1| (Z99120) similar to NADH
dehydrogenase (ubiquinone) [Bacillus subtilis]
Length = 480
Score = 210 bits (528), Expect = 4e-53
Identities = 135/432 (31%), Positives = 227/432 (52%), Gaps = 18/432 (4%)
Query: 13 LISAFFVPVLKRIKQSLIMPYLILITLIQTG-------IAGWVFYEVYTTGKPIIIMAGG 65
+I A +P+L I + L+L+ + T I+G + V+T G + + GG
Sbjct: 5 VILAILIPILSAILLIFMTKNLMLMRIFSTAASAIGIVISGILVQTVFTKGIQTLSL-GG 63
Query: 66 WRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAV--KVEPIDKYAMLFLLLMLGATG 123
W+ P GI L FA+L VL A++ + ++S ++V K E Y+ + LL G +G
Sbjct: 64 WKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLA-GVSG 122
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYG 183
TGD+FN++VF E+ I +Y L T S+KYIV + S+ F+IGV LY
Sbjct: 123 AFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRESLKYIVFNIVSSALFVIGVGFLYA 182
Query: 184 ATGTLNMAHLA-ELSTSINP-IVAQVG-LALVIFGLAVEAELFPLNAWAPDAYQAAPHPI 240
TGTLNMA L+ ++S S ++ +G L L++FG+ + +FPL W P +Y A P I
Sbjct: 183 VTGTLNMADLSVKISESGQTGLITVIGVLLLLVFGM--KGGIFPLYFWLPGSYYAPPAAI 240
Query: 241 TVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
+ +F A + K GLYA+ R+ L+ + + +L++ +A LTVIF + +L +V ++
Sbjct: 241 SALFGALLTKVGLYAITRVFTLIF-IHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMKI 299
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKF 360
+ Y+ I +G+I ++ T A + ++++++ +VK +F+ G + G L K
Sbjct: 300 VIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLVKGALFMLAGTLIALTGTASLHKM 359
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
GL KR P+ I A+S G+P + F KF+I G ++L+L +S++
Sbjct: 360 GGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGEFTISMLILLSSLLVL 419
Query: 421 VYYFRL-VHTMW 431
R+ +H W
Sbjct: 420 YSVLRIFIHAFW 431
>emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]
Length = 480
Score = 209 bits (527), Expect = 5e-53
Identities = 134/432 (31%), Positives = 227/432 (52%), Gaps = 18/432 (4%)
Query: 13 LISAFFVPVLKRIKQSLIMPYLILITLIQTG-------IAGWVFYEVYTTGKPIIIMAGG 65
+I A +P+L I + L+L+ + T I+G + V+T G + + GG
Sbjct: 5 VILAILIPILSAILLIFMTKNLMLMRIFSTAASAIGIVISGILVQTVFTKGIQTLSL-GG 63
Query: 66 WRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAV--KVEPIDKYAMLFLLLMLGATG 123
W+ P GI L FA+L VL A++ + ++S ++V K E Y+ + LL G +G
Sbjct: 64 WKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLA-GVSG 122
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYG 183
TGD+FN++VF E+ I +Y L T S+KYIV + S+ F+IGV LY
Sbjct: 123 AFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRESLKYIVFNIVSSALFVIGVGFLYA 182
Query: 184 ATGTLNMAHLA-ELSTSINP-IVAQVG-LALVIFGLAVEAELFPLNAWAPDAYQAAPHPI 240
TGTLNMA L+ ++S S ++ +G L L++FG+ + +FPL W P +Y A P I
Sbjct: 183 VTGTLNMADLSVKISESGQTGLITVIGVLLLLVFGM--KGGIFPLYFWLPGSYYAPPAAI 240
Query: 241 TVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
+ +F A + K GLYA+ R+ L+ + + +L++ +A LTVIF + +L +V ++
Sbjct: 241 SALFGALLTKVGLYAITRVFTLIF-IHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMKI 299
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKF 360
+ Y+ I +G+I ++ T A + ++++++ ++K +F+ G + G L K
Sbjct: 300 VIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLIKGALFMLAGTLIALTGTASLHKM 359
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
GL KR P+ I A+S G+P + F KF+I G ++L+L +S++
Sbjct: 360 GGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGEFTISMLILLSSLLVL 419
Query: 421 VYYFRL-VHTMW 431
R+ +H W
Sbjct: 420 YSVLRIFIHAFW 431
>gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subunit FpoN [Methanosarcina mazei]
Length = 493
Score = 203 bits (511), Expect = 4e-51
Identities = 132/418 (31%), Positives = 215/418 (50%), Gaps = 23/418 (5%)
Query: 74 LYIGPFAALFVLIIAVVSFITAVFSVKAVK-VEPIDKYAMLFLLLMLGATGMIATGDIFN 132
L I + F L+ V+ I ++ S+K + + +++ L L G + + D+
Sbjct: 73 LSIDALSQFFKLVFLAVALIVSIASIKYTENSDHTEEFYTLVLFATFGMMIVASANDLIL 132
Query: 133 LFVFMEITAITAYALTAYNK-TGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
LF E+ ++ +AL + K + E +MKY V+G + ++ L G++ +YGATGT ++
Sbjct: 133 LFCAFELASLATFALAGFEKQNARSLEGAMKYFVIGSVSAALMLFGLSFVYGATGTTSIP 192
Query: 192 HLAELSTSI--NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVV 249
+A+ + NPI V + L+ G + L P + WAPD YQ +P ++ + +A
Sbjct: 193 LIAQNPGLLTGNPI-GIVAIVLLTAGFGFKMALVPFHMWAPDTYQGSPSVVSALLAAGSK 251
Query: 250 KAGLYAMARILYLLQKA--NGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIG 307
K G A R+ + A W + L +A +T+ F + A+ Q VKRM+AYSS+
Sbjct: 252 KMGFVAAFRVFIIALAALQPDWQFMFTL---LAVVTMTFGNVVAVAQTSVKRMLAYSSLA 308
Query: 308 QIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVG--ITLGGT-------ELE 358
Q G IA+AF++ T + G+ + L HA +KA F+ V IT T L+
Sbjct: 309 QAGYIAMAFAVMTPVALAGGIMYTLAHAFMKAGAFIAAAAVVWMITSEKTGNLDIPDHLD 368
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
F GLGKRMPL AL +T+ + G+P F +KF + +T+QAG W A++ + S +
Sbjct: 369 SFRGLGKRMPLAALCMTVFVFALAGIPPTAGFMAKFVLFSSTIQAGMTWLAVIAILNSAL 428
Query: 419 EAVYYFRLVHTMWF---SGSGERVKEGWIVIFLLLLAVL-VVAIGIYPTPAWEIVKRA 472
YY RLV M+F G E+V + LL+AV V+ +G++P P E+ +A
Sbjct: 429 SLFYYARLVKYMYFMPPEGKTEKVSIPFPYAAALLVAVAGVLVMGLWPEPFVELAMKA 486
>sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||E65024 hypothetical
protein b2486 - Escherichia coli (strain K-12)
>gi|1616955|gb|AAB88568.1| (M63654) Hyf F [Escherichia
coli] >gi|1788831|gb|AAC75539.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1805545|dbj|BAA16374.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE 3,
SUBUNIT 3). [Escherichia coli]
Length = 526
Score = 191 bits (480), Expect = 2e-47
Identities = 134/503 (26%), Positives = 246/503 (48%), Gaps = 36/503 (7%)
Query: 2 SQVASLLIALPLISAFFVPVLKRIKQSLIMPYLIL----ITLIQTGIAGWVFYEVYTTGK 57
S + +LL+ PL+ + ++ + S +L ITL+ +A WV G+
Sbjct: 4 SVMFALLLLTPLLFSLLCFACRKRRLSATRTVTVLHSLGITLLLI-LALWVVQTAADAGE 62
Query: 58 PIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVE---------PID 108
I AG W L+I LF+ I+ V+ F+T ++S+ ++ E +
Sbjct: 63 --IFAAGLW-------LHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLC 113
Query: 109 KYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGG 168
Y F L + ++ + ++ ++ +E T +++ L + EA+ KYI++
Sbjct: 114 DYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICT 173
Query: 169 IGSSFFLIGVALLYG-ATGTLNMAHLA-------ELSTSINPIVAQVGLALVIFGLAVEA 220
+G +F L G L+Y A + A +A + S+ ++P + + ++ G +
Sbjct: 174 VGVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKT 233
Query: 221 ELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMA 280
LFP++AW PDA+ AP P++ + SA ++ L + R ++ +A G RL+LI
Sbjct: 234 GLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFG 293
Query: 281 TLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAM 340
L+V A L QRD+KR++AYSS+ +GL+A+ +G G+ A + H+LNH++ K +
Sbjct: 294 MLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVELGIGGPLGIFAALLHILNHSLAKTL 353
Query: 341 MFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
+F G G V + G +L G+ K MP TA+ GA++ G+P FN+F S+F I A
Sbjct: 354 LFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAG 413
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKE---GWIVIF-LLLLAVLVV 456
L + +L+L + R+ + + + V GW+ +++L V+++
Sbjct: 414 LARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMML 473
Query: 457 AIGIY-PTPAWEIVKRAGSDIFA 478
A+G + P P I+ A + + +
Sbjct: 474 AMGTHIPQPVIRILAGASTIVLS 496
>sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|7431996|pir||D70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|2827568|emb|CAA16623.1| (AL021646) nuoN
[Mycobacterium tuberculosis]
Length = 531
Score = 183 bits (461), Expect = 3e-45
Identities = 124/378 (32%), Positives = 200/378 (52%), Gaps = 21/378 (5%)
Query: 113 LFLLLMLGATGMI---ATGDIFNLFVFMEITAITAYALT--AYNKTGEAAEASMKYIVLG 167
LF L ML GM+ A+ D+ +FV +E+ ++ Y + A N+ + EA+MKY +LG
Sbjct: 152 LFPLAMLSVGGMMVFPASNDLLTMFVALEVLSLPLYLMCGLARNRRLLSQEAAMKYFLLG 211
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAE-LSTSINPIVAQVGLALVIFGLAVEAELFPLN 226
S+FFL GVALLYGATGTL + + + L+ + +A G+AL+ GL + P +
Sbjct: 212 AFSSAFFLYGVALLYGATGTLTLPGIRDALAARTDDSMALAGVALLAVGLLFKVGAVPFH 271
Query: 227 AWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY--LLQKANGWSSVLRLVLIMATLTV 284
+W PD YQ AP PIT +A A A+ R++Y L + W VL + A LT+
Sbjct: 272 SWIPDVYQGAPTPITGFMAAATKVAAFGALLRVVYVALPPLHDQWRPVLWAI---AILTM 328
Query: 285 IFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLG 344
++A+ Q +VKRM+AYSS+ +G I AG+ A +F+++ ++ F
Sbjct: 329 TVGTVTAVNQTNVKRMLAYSSVAHVGFILTGVIADNPAGLSATLFYLVAYSFSTMGAFAI 388
Query: 345 VGYVGITLGG-----TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
VG V G +L + GLG+R P+ + L++ ++ G+PL + F SKF + A
Sbjct: 389 VGLVRGADGSAGSEDADLSHWAGLGQRSPIVGVMLSMFLLAFAGIPLTSGFVSKFAVFRA 448
Query: 400 TLQAGFIWPAILVLFASMVEAVYYFRLVHTMWF---SGSGERVKEGWIV--IFLLLLAVL 454
AG + I+ + +S V A +Y R++ +M+F SG V ++ + + V+
Sbjct: 449 AASAGAVPLVIVGVISSGVAAYFYVRVIVSMFFTEESGDTPHVAAPGVLSKAAIAVCTVV 508
Query: 455 VVAIGIYPTPAWEIVKRA 472
V +GI P P ++ +A
Sbjct: 509 TVVLGIAPQPVLDLADQA 526
>emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 579
Score = 183 bits (460), Expect = 4e-45
Identities = 102/360 (28%), Positives = 182/360 (50%), Gaps = 8/360 (2%)
Query: 58 PIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVE-----PIDKYAM 112
P+ + G + PPVGI L A L + + + V+ + V+S+ + P+ +
Sbjct: 57 PLSVHLGDFAPPVGITLVADRLAGLMLTVSSAVTLLVLVYSLGQGMADRDDQAPVGVFHP 116
Query: 113 LFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSS 172
+L+L+ G + GD+ NL+V EI + ++ L T A Y+++ S
Sbjct: 117 AYLILVAGVSCTFLAGDLVNLYVGFEIMLVASFVLLTIGGTATRIRAGSTYVIISLFSSV 176
Query: 173 FFLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
FL+ +A+ Y GT+N+A LAE + P V + A+++ A++A +FPL AW PD+
Sbjct: 177 LFLVAIAMTYAVAGTVNLAQLAERLQEVPPGVRTLLEAMLLTVFAIKAAVFPLAAWLPDS 236
Query: 233 YQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSAL 292
Y AP P+T +F+ + K G+Y+M R LL + L+++ A +++ L A+
Sbjct: 237 YPTAPAPVTAVFAGLLTKVGVYSMLRTQTLLFPGHRLGD---LLMLAALASMVVGILGAV 293
Query: 293 RQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL 352
Q D+KR+++++ I IG + +L G+ + ++ +H V+ +FL G +
Sbjct: 294 AQTDLKRVLSFTLISHIGYMVFGIALAGGGGISGAIVYVAHHITVQTTLFLVAGLIERRD 353
Query: 353 GGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILV 412
G TEL + GL + PL A+ + A++ G+P + F K ++ A + G W LV
Sbjct: 354 GTTELTRLGGLARTAPLLAVLFFVPAMNLAGIPPLSGFIGKLGLMRAGVADGGGWAWALV 413
>pir||D64463 conserved hypothetical protein MJ1309 - Methanococcus jannaschii
>gi|1591948|gb|AAB99316.1| (U67571) carbon monoxide
dehydrogenase, hydrogenase anchor subunit CooM (cooM)
[Methanococcus jannaschii]
Length = 481
Score = 180 bits (453), Expect = 2e-44
Identities = 139/487 (28%), Positives = 230/487 (46%), Gaps = 29/487 (5%)
Query: 7 LLIALPLISAFFVPVL----KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIM 62
++I PLI A + +L K +K + ILI L I+ + +Y Y G ++
Sbjct: 6 MMIVFPLIMAIIMNLLHGKEKAVKYITFITAAILIIL--PFISQYGYY--YFGGHGVV-- 59
Query: 63 AGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
GW + LY A+ V + + S + + +K + + L L+
Sbjct: 60 -NGWVSGIAY-LYNPAKQAIIVTLSLIASLVLITGMGEKLKN---NMFVTLSLMGFASIA 114
Query: 123 GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLY 182
++ DIFNL+VF EI +I L + T EA +A ++Y+++G + ++ L+G+A L
Sbjct: 115 AIVLADDIFNLYVFFEIVSIVQAGLVFLSGTEEAYKAGLRYMIMGNVAAALMLLGIAFLL 174
Query: 183 GATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV 242
+TGTLN+ + NP++ GL L+I GLA A L P + D Y + I+
Sbjct: 175 ASTGTLNITDMKHYLLVDNPMIYG-GLLLLIVGLAYGAGLPPFHNVKADLYARSKGFISA 233
Query: 243 MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
M + + M IL L + ++S +++ + L ++F + AL Q D K+++A
Sbjct: 234 MLQTYSKFVLVGLMIIILKLFNGLDYFASAHAVLIALGVLAMVFGVVMALLQSDYKKLLA 293
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEG 362
Y +I Q G +A +LGT G+ AG+FH +NH I K+ +FLG Y+ G+ L K G
Sbjct: 294 YHAISQGGYVATGLALGTPLGIVAGIFHAINHVIYKSALFLG-AYIVSCKRGSNLHKLGG 352
Query: 363 LGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL------FAS 416
L MP A + ++ G+P FN F SK+ + A +Q AI+++ F S
Sbjct: 353 LLPLMPSVAFMVLCAKLAISGIPPFNGFQSKWMLAQAAMQVNMPEIAIIMIIVSIGTFVS 412
Query: 417 MVEAVY--YFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYP----TPAWEIVK 470
M++A Y Y + V + V L +L L + IG+YP W+ K
Sbjct: 413 MMKAFYLIYLKPVDEETLKEYQNKEVPKLAVFSLFVLTALCIIIGLYPDIVTNYLWDYAK 472
Query: 471 RAGSDIF 477
G + +
Sbjct: 473 ELGVNYY 479
>pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105141|gb|AAF83129.1|AE003884_14 (AE003884)
NADH-ubiquinone oxidoreductase, NQO14 subunit [Xylella
fastidiosa]
Length = 485
Score = 178 bits (448), Expect = 9e-44
Identities = 119/406 (29%), Positives = 217/406 (53%), Gaps = 18/406 (4%)
Query: 80 AALFVLIIAVVSFITAVFSVKAVKVEPI--DKYAMLFLLLMLGATGMIATGDIFNLFVFM 137
A + ++I +VS ++ V+ ++ + + +L L LG +++ G + +++ +
Sbjct: 80 ADVMKVVIVLVSALSLVYGWSYLRERNLFQGEIPVLVLFATLGMMVLVSAGHLLMVYLGL 139
Query: 138 EITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAEL 196
E+ A+ +YAL A N+ + + EA+MKYIVLG + S L G++L+YGATGTL++ ++++
Sbjct: 140 ELLALCSYALVAVNRDSKISTEAAMKYIVLGSLASGLLLYGMSLIYGATGTLSLPGISDM 199
Query: 197 -STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYA 255
S + G +I G+A + P + W PD YQ AP PI V+F + K +
Sbjct: 200 IHGSSEKTLLLTGTVFLIAGVAFKLGAAPFHMWLPDVYQGAPTPI-VLFISSAPKLAAFG 258
Query: 256 MARILYLLQKANGWSSVLRLVLI--MATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIA 313
MA LL+ G S ++ +A +++ L A+ Q ++KRM+AYS++ +G +
Sbjct: 259 MA--YRLLEVGVGPLSPQWHLIFGGLAAFSLVIGNLMAIVQTNLKRMLAYSTVSHVGFLM 316
Query: 314 LAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEK---FEGLGKRMPLT 370
+ S G G + +F++L++AI+ F + + ++ G+E E F+GL R P
Sbjct: 317 MGVSGGGIHGYSSAMFYVLSYAIMSTASFGAI--IALSRRGSEAENIDDFKGLSTRHPWM 374
Query: 371 ALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTM 430
A L S G+P F FW+K ++ A +Q G +W AIL + +++ A YY R++ M
Sbjct: 375 AALLLCVMASLAGLPPFLGFWTKLAVLGAAVQGGMLWLAILGVICAVIGAYYYLRVIKVM 434
Query: 431 WFS---GSGERVKEGWIVIFLLLLAVL-VVAIGIYPTPAWEIVKRA 472
+F G V + ++ +L + V ++A+GI P + ++A
Sbjct: 435 YFDEPVGEPLPVNDDRVLGVILSINVFALLALGILWNPIIDWCQKA 480
>pir||S61395 probable Na+/H+-exchanging protein system component - Bacillus sp.
(strain C-125) >gi|854655|dbj|BAA06609.1| (D31823) ORF1
[Bacillus sp.] >gi|10173935|dbj|BAB05038.1| (AP001511)
Na+/H+ antiporter [Bacillus halodurans]
Length = 804
Score = 178 bits (448), Expect = 9e-44
Identities = 144/525 (27%), Positives = 253/525 (47%), Gaps = 78/525 (14%)
Query: 12 PLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG------G 65
P + A F+P+L + +S+ + +L+ + V + + + PI G
Sbjct: 11 PFLLAIFIPILYKYTRSIHTGWFVLVLPL-------VLFGYFLSLLPITSNGGVIHETIP 63
Query: 66 WRPPVGIN--LYIGPFAALFVLIIAVVSFITAVFSVKAV--KVEPIDKYAMLFLLLMLGA 121
W P +GIN +Y+ + LF L+I + + A++S+ + K E ++ + + L+ M
Sbjct: 64 WVPSLGINFTVYVDGLSLLFALLITGIGTLVALYSIYYLSKKTEKLNNFYVYLLMFMGAM 123
Query: 122 TGMIATGDIFNLFVFMEITAITAYALTAY----NKTGEAAEASMKYIVLGGIGSSFFLIG 177
G++ + ++ L+VF E+T++ + L +Y K+ A+ SM V GG L G
Sbjct: 124 LGVVLSDNLIVLYVFWELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFA---MLGG 180
Query: 178 VALLYGATGTLNMAHLAELSTSINPIVAQV-GLALVIFGLAVEAELFPLNAWAPDAYQAA 236
+LLY TGT ++ + E + ++ + + LV+ G ++ FP + W PDA +A
Sbjct: 181 FSLLYVITGTFSIREIIEQADAVLASTLFLPAMLLVLLGAFTKSAQFPFHIWLPDAMEA- 239
Query: 237 PHPITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQR 295
P P++ + SA +VKAGLY +AR+ + W L+ +T+ + +SA+RQ+
Sbjct: 240 PTPVSAYLHSATMVKAGLYLVARLTPVFGGTPEW---FWLLAGFGIITLCWGSISAVRQK 296
Query: 296 DVKRMIAYSSIGQIGLIALAFSLGTQA---------------GVDAGVFHMLNHAIVKAM 340
D+K ++A+S+I Q+GLI F LG+ A VFH++NHA K
Sbjct: 297 DLKSILAFSTISQLGLIMCLFGLGSATLHFDPTDSMIKFYATATLAAVFHLINHATFKGS 356
Query: 341 MFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
+F+ VG + G ++ K GL MP+T IG + G+P FN F SK
Sbjct: 357 LFMTVGIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLAAMAGLPPFNGFLSKEMFFSGV 416
Query: 401 LQA-----------GFIWPAILVLFASMVEAVYYFRLVHTMWF-SGSGERVKEGW----- 443
+ A GF++P + + V +V+ F M+F + +GE KE +
Sbjct: 417 VTATTLGIFNMETWGFLFPVL-----AWVASVFTFVYCAIMFFRTFTGEFKKENYDVHVH 471
Query: 444 -----IVIFLLLLAVLVVAIGIYPT-PAWEIVKRA-----GSDIF 477
++I ++L LVV G++P + I++ A G+D+F
Sbjct: 472 EAPMGMLISPVILGSLVVIFGLFPNLLTYTIIEPAVTAILGADVF 516
>pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus abyssi (strain
Orsay) >gi|5458135|emb|CAB49624.1| (AJ248285) NADH
DEHYDROGENASE I SUBUNIT M [Pyrococcus abyssi]
Length = 618
Score = 178 bits (446), Expect = 2e-43
Identities = 134/494 (27%), Positives = 231/494 (46%), Gaps = 53/494 (10%)
Query: 1 MSQVASLLIALPLISAFFVPV--LKRIKQSL--IMPYLILITLIQTGIAGWVFYEVYTTG 56
M+++ +I PL++ F + +K I++ + I + LI LI+ Y G
Sbjct: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIK-------LYPSLGQG 53
Query: 57 KPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLL 116
I GG++ + + +F +I AVV + V K D Y LF L
Sbjct: 54 VSYTITVGGFK----LGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK----DGYEWLFAL 105
Query: 117 LML-GATGMIATGDIFNLFVFMEITAITAYALTA-YNKTGEAAEASMKYIVLGGIGSSFF 174
+ L GA G+ D+ F+F EI ++ + +N+ AS+KY +L +G+
Sbjct: 106 MSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAYAM 160
Query: 175 LIGVALLYGATGTLNMAHLAE------LSTSIN--PIVAQVGLALV----IFGLAVEAEL 222
L+ + L+Y TG+ + + ++ +ST + P +++ +AL+ + V+A +
Sbjct: 161 LVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGM 220
Query: 223 FPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQ---------KANGWSSVL 273
FPL+ WAPDAY T +FS + KAG+Y +LY+L + +
Sbjct: 221 FPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFI-LLYILMYGKLLIDLGQVRSAPAFG 279
Query: 274 RLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLN 333
++ + LT+I + A Q D++R+ AYSSI Q+G I + +GT G++A ++H ++
Sbjct: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
Query: 334 HAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSK 393
HA+ K + FL V + G TE + F GL ++MP T I +S G+P F SK
Sbjct: 340 HALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
Query: 394 FRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGW-----IVIFL 448
+ I A + +V F S + VY R + +WF +++ + I +
Sbjct: 400 WLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGM 459
Query: 449 LLLAVLVVAIGIYP 462
+L L V G+ P
Sbjct: 460 AILGTLNVVFGVAP 473
>emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conserved)
[Methanobacterium thermoautotrophicum]
Length = 498
Score = 176 bits (441), Expect = 6e-43
Identities = 133/491 (27%), Positives = 243/491 (49%), Gaps = 38/491 (7%)
Query: 1 MSQVASLLIALPLISAFFVPVLK---RIKQSLIMPYLILITLIQTGIAGWV--FYEVYTT 55
M+ + +++ LP++ A + +L R ++L + IL+ +I +AG+ ++ Y
Sbjct: 1 MNPLIPVMVVLPILCALLLNLLHGRDRTVKALAVAVAILLPIIPL-LAGYGAHYFGGYAP 59
Query: 56 GKPIIIMAGGWRPPV----------GINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVE 105
+A G V GI G +F+LI+++V+F+ + S+ V+ +
Sbjct: 60 LSENPAIASGLPDSVKSSYLYSFHPGITYLFGSAQRIFLLILSIVAFLAVLTSLNEVR-K 118
Query: 106 PIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIV 165
P YA L + T ++ T DIFNL+VF EI A+ + + + E ++KY++
Sbjct: 119 PSGVYAFLMFMGTAAVTAIVLTDDIFNLYVFFEIAALAQVGVILCSGVERSYETALKYMM 178
Query: 166 LGGIGSSFFLIGVALLYGATGTLNMAHLAELSTS--INPIVAQVGLA--LVIFGLAVEAE 221
+GG+ + L+GVA+L TG +N++ + S +NP LA L++FG
Sbjct: 179 IGGVAAPMLLLGVAILLALTGNVNISDIVFSMRSGLVNPGSPLFLLASSLILFGWLYGTG 238
Query: 222 LFPLNAWAPDAY-QAAPHPITVM--FSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLI 278
L P + Y +A PH ++ FS F A + R+ Y + ++R ++
Sbjct: 239 LPPFHTIKSAVYSKALPHGAALLQAFSVFTFTALALVILRMFYHMP-------LVRWAMV 291
Query: 279 MATLTVIFAELS-ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIV 337
+L + +S AL Q D++RMI + ++G++G I + LGT A + AG+F +N A++
Sbjct: 292 FFSLAGMVLGISMALMQTDLRRMIGFLAVGELGYIGIGLGLGTAASISAGLFQAVNEALI 351
Query: 338 KAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
A +FLG G + G ++ E+ GL P A + + GVP FNVF SK +I
Sbjct: 352 TACIFLGFGTIFYMTGRSDPERIGGLIAYKPGLAGLVMLSGFIMAGVPPFNVFQSKLMLI 411
Query: 398 VATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVK------EGWIVIFLLLL 451
A++QAGF ++++ S+V + + R ++++ E ++ V L++L
Sbjct: 412 QASIQAGFPELGVVMILLSIVTFMTFLRAFYSVYLRPEPEGMELESESVPRSTVFSLVVL 471
Query: 452 AVLVVAIGIYP 462
++ A+G+ P
Sbjct: 472 ILICTALGLAP 482
>sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|3282579|gb|AAC25005.1| (AF029365) NUON
[Rhodobacter capsulatus] >gi|1586528|prf||2204231J NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 478
Score = 175 bits (438), Expect = 1e-42
Identities = 99/331 (29%), Positives = 177/331 (52%), Gaps = 12/331 (3%)
Query: 109 KYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNK-TGEAAEASMKYIVLG 167
+Y +L +L ++G M++ GD+ +L++ +E+ ++ Y + A + + ++EA +KY VLG
Sbjct: 104 EYPILIVLAVVGMMMMVSAGDLMSLYIGLELQSLALYVVAALRRDSAVSSEAGLKYFVLG 163
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAELSTSIN-PIVAQVGLALVIFGLAVEAELFPLN 226
+ S L G +L+YG GT + + + + PI GL ++ GLA + P +
Sbjct: 164 SLSSGLLLYGASLVYGFAGTTTFSGIITVVEQGHLPIGLLFGLVFLLAGLAFKVSAVPFH 223
Query: 227 AWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY--LLQKANGWSSVLRLVLIMATLTV 284
W PD Y+ +P P+T F+ A + +AR+++ Q W +L +A ++
Sbjct: 224 MWTPDVYEGSPTPVTAFFATAPKLAAMALIARVVHDAFGQVPGEWGQILAA---LALASM 280
Query: 285 IFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLG 344
++ + QRD+KR++AYSSI +G L + GT AGV++ + +M + ++ F
Sbjct: 281 YLGAIAGIGQRDIKRLMAYSSISHMGFGLLGLAAGTAAGVESMLLYMTIYIVMNVGTFAF 340
Query: 345 VGYVGITLGG---TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
+ + + G TE+ L K P+ A AL + S GVP F++KF +I A +
Sbjct: 341 I--LSMERDGKPVTEIAALNMLSKTDPVKAFALLVLLFSLAGVPPMLGFFAKFAVIKAAI 398
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWF 432
AGF+W + + AS++ A YY R+V+ M+F
Sbjct: 399 GAGFVWVPVAAVVASVIGAFYYLRIVYFMYF 429
>emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 479
Score = 174 bits (437), Expect = 2e-42
Identities = 121/423 (28%), Positives = 206/423 (48%), Gaps = 28/423 (6%)
Query: 60 IIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK--YAMLFLLL 117
+++AG RP FA F L+ + + +T S K ++E I + Y +L L
Sbjct: 57 LMLAGEMRPAYAGMFISDRFAVFFKLVFYLATILTFFLSRKYAEIEGIGRSEYYVLLLFA 116
Query: 118 MLGATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLI 176
++G M + D+ +++V +E+ + Y LT + K + EA++KY++LG + ++ FL
Sbjct: 117 LVGMMIMASAIDLLSIYVGLELMVLCTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLY 176
Query: 177 GVALLYGATGTLNMAHLAELSTSINPIVAQVGLALV--IFGLAVEAELFPLNAWAPDAYQ 234
GV+L+YG TGT + +AE + S P+ + LA+V + GL + P + W PD Y+
Sbjct: 177 GVSLIYGLTGTTQLDRMAE-AVSGGPLDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYE 235
Query: 235 AAPHPITVMFSAFVVKAGLYAMARILY--LLQKANGWSSVLRLVLIMATLTVIFAELSAL 292
AP IT S AG + R+ L++ +N W +V +A T+ AL
Sbjct: 236 GAPTTITAFMSVAPKAAGFAVILRVFLNPLVEASNAWI----IVAAIAVATMALGSFVAL 291
Query: 293 RQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL 352
Q + KR++AYSSI G G Q G+ + + ++L + F+ +G G +
Sbjct: 292 VQDNFKRLLAYSSIAHAGFAIFGVVAGGQDGIASVMLYLLIYT------FMNLGIFGAVI 345
Query: 353 -------GGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGF 405
G +E + G K P AL + + S G+P F++KF ++VA ++ GF
Sbjct: 346 MMRNGDFSGEVIEDYAGFAKFHPGLALLMLLYLFSLAGIPPTAGFFAKFYVLVALVERGF 405
Query: 406 IWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWI--VIFLLLLAVLVVAIGIYPT 463
+ A++ + S+V A +Y R+V ++ ER E + ++ L IGI
Sbjct: 406 VALAVIAVLLSVVSAYFYIRIVMVIYMR-EPERAFEPALTPLVSATLAFTAAGTIGIGLF 464
Query: 464 PAW 466
PAW
Sbjct: 465 PAW 467
>pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii
>gi|3257875|dbj|BAA30558.1| (AP000006) 617aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 617
Score = 174 bits (436), Expect = 2e-42
Identities = 115/409 (28%), Positives = 197/409 (48%), Gaps = 38/409 (9%)
Query: 82 LFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLML-GATGMIATGDIFNLFVFMEIT 140
+F +I AVV ++AVF + + D Y LF L+ L GA G+ D+ F+F E+
Sbjct: 74 VFSMIAAVVG-LSAVFGMASTAK---DSYEWLFSLMSLTGALGIFMAQDLVTFFIFWEVM 129
Query: 141 AITAYALTA-YNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTS 199
+++ + +N+ AS+KY++L IG+ L+ + ++Y TGT A ++
Sbjct: 130 TFSSFMMVLKFNRA-----ASLKYLILSIIGAYSMLVAIGIIYAKTGTFTFADISAFFRK 184
Query: 200 INPIVAQVG---------LALV----IFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSA 246
++A +G +AL+ + V+A +FPL+ WAPDAY T +FS
Sbjct: 185 -EAMLAMLGGKSTFSRFDMALIYLLFLMAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSG 243
Query: 247 FVVKAGLYAM--------ARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
+ K G+Y ++L L + G ++ + LT+I + A Q D++
Sbjct: 244 VLSKTGVYGFILLYVLMYGKLLIDLGQFKGTPLFGYIIAFLGGLTIIIGGVLAALQEDIR 303
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELE 358
++ AYSSI Q+G I + +GT G++A ++H ++HA+ K + FL V + G TE +
Sbjct: 304 KLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLVVATIIYRTGKTEFK 363
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
F GL ++MP T I +S G+P F SK+ I A + ++ F S +
Sbjct: 364 DFGGLAEKMPFTFAMAFIAILSLAGIPPLVGFASKWLIFEAVISQKLPILGGMLFFGSAI 423
Query: 419 EAVYYFRLVHTMWFSGSGERVKEGW-----IVIFLLLLAVLVVAIGIYP 462
VY R + +WF +++ + I + +L L V G+ P
Sbjct: 424 GFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMGILGTLNVVFGVAP 472
>dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]
Length = 801
Score = 173 bits (433), Expect = 5e-42
Identities = 130/503 (25%), Positives = 249/503 (48%), Gaps = 63/503 (12%)
Query: 7 LLIALPLISAFFVPVLKRIKQSL----------IMPYLILITLIQTGIAGWVFYEVYTTG 56
+ + LPLI A +P+L R + + I+ ++ ++TLI+T ++G
Sbjct: 6 IAVILPLIFALIIPILYRFFKRIHLGWFVLSVPIVIFIYMLTLIKTTMSG---------- 55
Query: 57 KPIIIMAGGWRPPVGIN--LYIGPFAALFVLIIAVVSFITAVFSVKAV-KVEPIDKYAML 113
++ W P G+N LY+ LF L+I+ + + ++S+ + K E + +
Sbjct: 56 -NTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCY 114
Query: 114 FLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSS 172
LL M G++ + ++ L++F E+T+ +++ L ++ + +A+ + K +++ G
Sbjct: 115 LLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGL 174
Query: 173 FFLIGVALLYGATGTLNMAHLAELSTSI-NPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
L G+ LL T + ++ ++ + ++ I N + L++ G ++ FP W PD
Sbjct: 175 SLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPD 234
Query: 232 AYQAAPHPITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A +A P P++ + SA +VKAGLY +AR+ + + GW + LV +T+ +A L+
Sbjct: 235 AMEA-PTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLV---GLITLFWASLN 290
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGT-------------QAGVDAGVFHMLNHAIV 337
A +Q+D+K ++A+S++ Q+G+I +G A A +FH++NHA
Sbjct: 291 ATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATF 350
Query: 338 KAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
K +F+ G V + G +++K GL MP++ I A+S GVP FN F SK +
Sbjct: 351 KGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFL 410
Query: 398 VATLQA-----------GFIWPAILVLFASMVEAVYYFRLVHTMWF-----SGSGERVKE 441
T A G+++P I+ + S+ VY + + ++F ++ E
Sbjct: 411 ETTFTASQANLFSVDTLGYLFP-IIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHE 469
Query: 442 GWIVIFL--LLLAVLVVAIGIYP 462
I++ L +LA LV+ G++P
Sbjct: 470 VSILMLLSPAILATLVIVFGLFP 492
>pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N NMA2228
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380847|emb|CAB85439.1| (AL162758) NADH
dehydrogenase chain N [Neisseria meningitidis Z2491]
Length = 481
Score = 172 bits (431), Expect = 9e-42
Identities = 118/392 (30%), Positives = 204/392 (51%), Gaps = 20/392 (5%)
Query: 85 LIIAVVSFITAVFSVKAVKVEPIDK--YAMLFLLLMLGATGMIATGDIFNLFVFMEITAI 142
+++ ++F V++ +V I K + L L +LG M++ G ++ +E+ ++
Sbjct: 81 MVLYALTFALFVYARPYNQVRGIFKGEFYTLSLFALLGMGVMVSAGHFLTAYIGLELLSL 140
Query: 143 TAYALTAYNK-TGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHL--AELSTS 199
YAL A + +G AAEA++KY VLG + S L G++++YGATG+L A + + +
Sbjct: 141 ALYALIALRRDSGFAAEAALKYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEE 200
Query: 200 INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARI 259
N + ++GL ++ +A + P + W PD Y AP +T + A + RI
Sbjct: 201 ANEWLLKLGLVFIVVAVAFKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAVVFAFRI 260
Query: 260 LY--LLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFS 317
L L + WS + L +A +++ L+A+ Q ++KRM+AYS++ +G I LAF
Sbjct: 261 LVTGLGTVHHDWSLMFAL---LAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFM 317
Query: 318 LGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFE---GLGKRMPLTALAL 374
G G AG+++ + +A++ A F GV V ++ G E E GL + A +
Sbjct: 318 AGA-VGFAAGLYYAITYALMAAAGF-GVLMV-LSDGDNECENISDLAGLNQHRVWLAFLM 374
Query: 375 TIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ S G+P F++KF +I+A L+ G++W ++ + S++ A YY R+V M+F
Sbjct: 375 LLVMFSMAGIPPLMGFYAKFGVIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDE 434
Query: 435 SGE---RVKEGWIVIFLLLL-AVLVVAIGIYP 462
SG V FLL + A+L+V GI P
Sbjct: 435 SGRARPTVGGNNAAKFLLSVNALLLVLWGIMP 466
>pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622358|gb|AAB85735.1| (AE000891) NADH dehydrogenase
I, subunit N [Methanobacterium thermoautotrophicum]
Length = 498
Score = 171 bits (429), Expect = 2e-41
Identities = 134/492 (27%), Positives = 235/492 (47%), Gaps = 40/492 (8%)
Query: 1 MSQVASLLIALPLISAFFVPVLK---RIKQSLIMPYLILITLIQTGIAGWVFY------- 50
M+ + +++ LP++ A + +L R ++L + IL+ +I V Y
Sbjct: 1 MNPLIPVMVVLPILCALLLNLLHGRDRTVKALAVAVAILLPIIPLLAGYGVHYFGGYAPL 60
Query: 51 ---EVYTTGKPIIIMAG---GWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKV 104
G P I + + P I G +F+LI+++V+F+ + S+ V+
Sbjct: 61 SENSTIAAGLPASIKSSYLYSFHP--AITYVFGSAQRIFLLILSLVTFLAVLTSLNEVR- 117
Query: 105 EPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYI 164
P YA L + T ++ T DIFNL+VF EI A+ + + E ++KY+
Sbjct: 118 RPSGVYAFLMFMGTAAVTAIVLTDDIFNLYVFFEIAALAQVGVVLCSGVERNYETALKYM 177
Query: 165 VLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTS--INP--IVAQVGLALVIFGLAVEA 220
++GG+ L+GV +L TG +N++ + S +NP + + AL+IFG
Sbjct: 178 MIGGVAVPMLLLGVGILLALTGNVNISDIVYSMRSGLVNPGSPLFLLASALLIFGWLYGT 237
Query: 221 ELFPLNAWAPDAY-QAAPHPITVM--FSAFVVKAGLYAMARILYLLQKANGWSSVLRLVL 277
L P + Y +A PH ++ FS F A + R+ Y + ++R V+
Sbjct: 238 GLPPFHTIKSAIYSKALPHGSALLQAFSVFTFTALAIVILRMFYHVP-------LVRWVM 290
Query: 278 IMATLTVIFAELS-ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAI 336
+ +L + +S AL Q D++RMI + ++G++G I + LGT A + AG+F +N A+
Sbjct: 291 VFFSLAGMVLGISMALMQTDLRRMIGFLAVGELGYIGIGLGLGTAASISAGLFQAVNEAL 350
Query: 337 VKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRI 396
+ A +FLG G + G T+ E GL P A + + GVP FNVF SK R+
Sbjct: 351 ITACIFLGFGTIFYMTGKTDPEAMGGLLAYKPGLAGLVMLSGFIMAGVPPFNVFQSKLRL 410
Query: 397 IVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGS--GERVKEGWI----VIFLLL 450
I A +QAG IL++ S+V + + R ++++ G ++ + V +++
Sbjct: 411 IQAAIQAGVPELGILMILLSIVTFMTFMRAFYSVYLKPEPRGMELESRSVPRSTVFSMVV 470
Query: 451 LAVLVVAIGIYP 462
L ++ +GI P
Sbjct: 471 LIIICTVLGIAP 482
>pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946970|gb|AAG04445.1|AE004537_10 (AE004537)
probable NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 499
Score = 171 bits (429), Expect = 2e-41
Identities = 136/473 (28%), Positives = 229/473 (47%), Gaps = 34/473 (7%)
Query: 1 MSQVASLLIALPLI--SAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKP 58
MS L I LPL S +P+ +R ++ L + L + LI + + +G
Sbjct: 1 MSHWLILPILLPLFAGSLLLLPLAERWQRGLSL--LAALALIPLSL---LLIRTAASGDL 55
Query: 59 IIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK-YAMLFLLL 117
+ G W P GI L + AAL +L AV+ +++++ + + K + LF
Sbjct: 56 SVYALGNWAAPFGIVLMLDRLAALMLLATAVLGSAALIYALRGE--DRLGKHFHALFQFQ 113
Query: 118 MLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIG 177
+LG G TGD+FNLFVF EI I +YAL + E + + Y++L +GS+FFLI
Sbjct: 114 LLGINGAFLTGDLFNLFVFFEILLIASYALLLHGGGAERVRSGLHYVILNLVGSAFFLIA 173
Query: 178 VALLYGATGTLNMAHLAELSTSIN----PIVAQVGLALVIFGLAVEAELFPLNAWAPDAY 233
V LYG TGTLNMA +A+ + P++A GL L++ A++A L PL W P AY
Sbjct: 174 VGTLYGLTGTLNMADMAQKIAMADAERAPLLAAAGLLLLVV-FALKAALLPLYFWLPRAY 232
Query: 234 QAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLI----MATLTVIFAEL 289
A P+ +F A + K G+Y++ R+ Y L + + L +A T+ +
Sbjct: 233 ATASAPVAALF-AIMTKVGIYSILRV-YTLVFGDAAGELANLAQAWLWPLALATLGLGAI 290
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVG 349
AL R ++ ++AY + G + +LG++ + A ++++L+ + +FL V
Sbjct: 291 GALAARTLQGLLAYLVVVSAGTLLAGVALGSERALAASLYYLLHSTWIAGGLFLLADLVA 350
Query: 350 ITLGGTELEKFEGLGKRMP-LTALALTIGAVSTVGVPLFNVFWSKFRIIVATL---QAGF 405
G + +G + P L A IGA++ G+P + F+ K ++ + QA
Sbjct: 351 RQRGDKAGDLVQGPALQNPRLLGGAFFIGAIAVAGLPPLSGFFGKVMLLQSVAPGSQALA 410
Query: 406 IWPAIL------VLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIVIFLLLLA 452
+W +L ++ S + ++R HT+ GS E + G + +LLL+
Sbjct: 411 LWSVVLGSGLVALVALSRAGSTLFWRTGHTV--LGSAE-LDHGRLFACILLLS 460
>pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
Deinococcus radiodurans (strain R1)
>gi|6459249|gb|AAF11055.1|AE001993_5 (AE001993) NADH
dehydrogenase I, N subunit [Deinococcus radiodurans]
Length = 492
Score = 169 bits (425), Expect = 5e-41
Identities = 105/349 (30%), Positives = 179/349 (51%), Gaps = 14/349 (4%)
Query: 84 VLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIA---TGDIFNLFVFMEIT 140
VL+ A+++ + ++ + +V +A LLM TG + +GD+ + + +EI
Sbjct: 90 VLLGALLTLLVSLDTAYRARVS----FAEFDALLMYAVTGCLLIAFSGDLIVMLIGLEIM 145
Query: 141 AITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSI 200
++ +Y L + + EA +KY +LG +GS+ + G+A LYGATGTLN A +A+ +++
Sbjct: 146 SLASYVLATLQDSRRSQEAGLKYFLLGSVGSAILIYGLAFLYGATGTLNYAGIAQQVSAL 205
Query: 201 NPI---VAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMA 257
+P + G LV+ G V+ L P + W PD Y AP +++ S V A M
Sbjct: 206 DPQNIGILVTGTLLVLSGFGVKIALVPFHQWTPDVYSGAPTLVSLFLSTVVKVAAFAGML 265
Query: 258 RILY-LLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAF 316
R+ L GW SVL+ I+ LT++ +AL Q++ KR++AYS++ G +A+
Sbjct: 266 RVFGGALAAGPGWHSVLQ---ILVALTLVIGNAAALYQQNFKRLLAYSAVAHTGFLAMTL 322
Query: 317 SLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTI 376
T G A +++L + ++ V + T G + GL R P A+AL
Sbjct: 323 LGDTAQGGAALGYYLLVYTLMTVGALAVVAALQRTEEGLTINDMRGLYYRHPAYAVALAF 382
Query: 377 GAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFR 425
S G+P F F++K+ I QAG++ ++L + +S+ VYY R
Sbjct: 383 CLASLAGLPPFAGFFAKYLAIQVAFQAGYLLISVLAVLSSVAALVYYLR 431
>pir||T34611 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
Streptomyces coelicolor >gi|5042264|emb|CAB44518.1|
(AL078618) nuoN, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 552
Score = 169 bits (424), Expect = 6e-41
Identities = 115/371 (30%), Positives = 184/371 (48%), Gaps = 25/371 (6%)
Query: 113 LFLLLMLGATGMI---ATGDIFNLFVFMEITAITAYALTAY--NKTGEAAEASMKYIVLG 167
+F LL+ GM+ A D+ LFV +E+ ++ Y L A K + EA++KY +LG
Sbjct: 165 VFPLLLFAVAGMLVFPAANDLLTLFVALEVFSLPLYLLCALARRKRLMSQEAAVKYFLLG 224
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAEL-------------STSINPIVAQVGLALVIF 214
S+F L G+ALLYG G+++ +A++ T N + VG AL++
Sbjct: 225 AFASAFTLFGIALLYGYAGSMSYGTIAQVVDGTVQNVTPALADTMGNDALLLVGSALIVM 284
Query: 215 GLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLR 274
GL + P + W PD YQ AP P+T +A A A+ RILY++ W R
Sbjct: 285 GLLFKVGAVPFHMWTPDVYQGAPTPVTGFMAAATKVAAFGALLRILYVVLPGLRWD--WR 342
Query: 275 LVLI-MATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLN 333
V+ +A +T++ + A+ Q D+KR++AYSSI G I T G+ + +F++
Sbjct: 343 PVMWGVAIVTMLAGAIVAITQTDIKRLLAYSSIAHAGFILAGVIATTPEGISSVLFYLAA 402
Query: 334 HAIVKAMMFLGVGYVGITLG-GTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWS 392
++ V F V V G T L K+ GLG+R PL A + ++ G+PL + F
Sbjct: 403 YSFVTIGAFAVVTLVRDAGGEATHLSKWAGLGRRSPLVAAVFAVFLLAFAGIPLTSGFSG 462
Query: 393 KFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIVIFLLLLA 452
KF + A + G ++ + +S + A +Y R++ M+FS E EG V L
Sbjct: 463 KFAVFKAAAEGGAAPLVVIGVISSAIAAFFYIRVIVLMFFS---EPRPEGPTVAVPSPLT 519
Query: 453 VLVVAIGIYPT 463
+ +A+G+ T
Sbjct: 520 MTAIAVGVAVT 530
>gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG3 [Halobacterium
sp. NRC-1]
Length = 403
Score = 169 bits (423), Expect = 8e-41
Identities = 114/399 (28%), Positives = 191/399 (47%), Gaps = 27/399 (6%)
Query: 104 VEPIDKYAMLFLLLMLGATGMI---ATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EA 159
++ D A + L +L ATGM A + +F+ +E+ ++ +Y L +Y K + EA
Sbjct: 7 LDDADSVAEFYALTLLAATGMTLMAAANSLVTVFISLELASLPSYVLVSYLKRDRGSIEA 66
Query: 160 SMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIF--GLA 217
+KY ++G + S L G++L+Y ATG + + +A+ T+ V +GL +V+ G A
Sbjct: 67 GLKYFLIGALSSGVMLYGISLVYAATGVMGLPAIADTITAGTDFVGVLGLGIVMLVAGFA 126
Query: 218 VEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARIL---YLLQKANG----WS 270
+ P + WAP+AY+ AP P++ S+ AG + R+ + L G WS
Sbjct: 127 FKTASVPFHFWAPEAYEGAPAPVSAFISSASKAAGFAVLFRVFTTAFPLDVIAGTVIDWS 186
Query: 271 SVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQ-----IGLIALAFSLGTQAGV- 324
L +A +T+ +A Q +VKRM+AYSS+G IGL AL G Q +
Sbjct: 187 L---LFAALAVVTMTLGNFAAATQENVKRMLAYSSVGHAGYVLIGLAALQSGGGAQNSLV 243
Query: 325 -DAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVG 383
A + H+L + + FL V G E + GL KR P+ +A+T+ S G
Sbjct: 244 LGASMMHLLVYGFMNTGAFLFVALAEYWDVGRTFEDYNGLSKRAPVACVAMTVFMFSLAG 303
Query: 384 VPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERV---- 439
+P+ F SK+ + +Q+GF W A + S + YY R+V +W + +
Sbjct: 304 LPVGAGFLSKYVLFAGAVQSGFAWLAGIAAINSALSLFYYSRVVKALWIEDPRDDLSLSG 363
Query: 440 KEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFA 478
+ + + +L AV +A+ + P + A +FA
Sbjct: 364 QPTGLYVAVLAAAVGTIALLVAFDPVAQTATHAADVLFA 402
>gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259543|gb|AAF43844.1|AF166114_56 (AF166114) subunit
2 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 502
Score = 168 bits (420), Expect = 2e-40
Identities = 117/440 (26%), Positives = 218/440 (48%), Gaps = 27/440 (6%)
Query: 10 ALPLISAFFVPVLKRIKQ---SLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
A+ + S+ F+ ++ I Q + ++PY+ ++ LI + ++ + ++ GK + G +
Sbjct: 19 AIIICSSLFILIIDLIFQRRANAVLPYMAILGLILSMLS--LLFQ--WNGKEVTAFLGSF 74
Query: 67 RPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVK--VEPIDKYAMLFLLLMLGATGM 124
+ + F L+IA+ S + + S++ ++ + + ++ ++FL LGA +
Sbjct: 75 QTD--------SLSIAFRLLIALSSMLCVLLSIEYLENSKKTLSEFLVIFLTATLGAMLL 126
Query: 125 IATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYG 183
+ DI +F+ +E + +Y LT Y K + EAS+KY+++G SS L G +LLYG
Sbjct: 127 CGSNDILMIFLSLETLGLCSYILTGYMKKDIRSNEASIKYLLIGAASSSILLYGFSLLYG 186
Query: 184 AT-GTLNMAHLAE---LSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHP 239
+ G + + +A + N + + V LAL+I G++ + P + WAPD Y+ AP P
Sbjct: 187 LSHGHIEIHEIAANLIKDQNGNSLASLVALALIIVGISFKIAAAPFHQWAPDVYEGAPTP 246
Query: 240 ITVMFSAFVVKAGLYAMARILYLLQK--ANGWSSVLRLVLIMATLTVIFAELSALRQRDV 297
+ S AGL RI+ +L N W ++ + I+A L++ + A+ Q ++
Sbjct: 247 VVAFLSVSSKAAGLMLATRIMTILFPYIINEWHNIFQ---ILAILSMAIGNIIAISQTNI 303
Query: 298 KRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTEL 357
KRM+ YSSI Q G + + G G + + +ML + + F V + G ++
Sbjct: 304 KRMLGYSSIAQAGFLLVGLLAGNINGYSSMLVYMLIYLFMNLGAFACVILFSLKTGSDQI 363
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASM 417
+ GL + P+ AL L+I +S G+P F F+ K + A +AG + L S+
Sbjct: 364 RDYGGLYLKDPILALCLSICLLSLGGIPPFGGFFGKLYLFWAGWEAGSYLLVFVGLLTSV 423
Query: 418 VEAVYYFRLVHTMWFSGSGE 437
+ YY +++ M S E
Sbjct: 424 ISIFYYIKIIKMMIIKESPE 443
>pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225482|gb|AAF40713.1| (AE002382) NADH dehydrogenase
I, N subunit [Neisseria meningitidis MC58]
Length = 480
Score = 167 bits (418), Expect = 3e-40
Identities = 113/391 (28%), Positives = 202/391 (50%), Gaps = 19/391 (4%)
Query: 85 LIIAVVSFITAVFSVKAVKVEPIDK--YAMLFLLLMLGATGMIATGDIFNLFVFMEITAI 142
+++ ++F V++ +V I K + L L +LG + M++ G ++ +E+ ++
Sbjct: 81 MVLYALTFALFVYAKPYNQVRGIFKGEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSL 140
Query: 143 TAYALTAYNK-TGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHL--AELSTS 199
YAL A + +G AAEA++KY VLG + S L G++++YGATG+L A + + +
Sbjct: 141 ALYALIALRRDSGFAAEAALKYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEE 200
Query: 200 INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARI 259
N + ++GL ++ +A + P + W PD Y AP +T + A + RI
Sbjct: 201 ANEWLLKLGLVFIVVAVAFKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAVVFTFRI 260
Query: 260 LY--LLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFS 317
L L + WS + L +A +++ L+A+ Q ++KRM AYS++ +G I LAF
Sbjct: 261 LVTGLGTVHHDWSLMFAL---LAAASLLVGNLAAIMQTNIKRMFAYSTVSHMGFILLAFM 317
Query: 318 LGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFE---GLGKRMPLTALAL 374
G G AG+++ + +A++ A F GV V ++ G E E GL + A +
Sbjct: 318 AGA-VGFAAGLYYAITYALMAAAGF-GVLMV-LSDGDNECENISDLAGLNQHRVWLAFLM 374
Query: 375 TIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFS- 433
+ S G+P F++KF +I+A L+ G +W ++ + S++ A YY R+V ++F
Sbjct: 375 LLVMFSMAGIPPLMGFYAKFGVIMALLKQGHVWLSVFAVIMSLIGAFYYLRVVKVIYFDV 434
Query: 434 -GSGERVKEGWIVIFLLLL-AVLVVAIGIYP 462
+ V + F+L + A L++ GI P
Sbjct: 435 PDHDQPVGSNYAAKFVLTVNAFLLLLWGIMP 465
>sp|P29801|NU2C_SYNP7 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >gi|66152|pir||DNYC27
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Synechococcus sp. (strain PCC 7942)
>gi|46485|emb|CAA46161.1| (X65027) NADH dehydrogenase
[Synechococcus PCC7942]
Length = 521
Score = 167 bits (418), Expect = 3e-40
Identities = 119/411 (28%), Positives = 200/411 (47%), Gaps = 20/411 (4%)
Query: 26 KQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIGPFAALFVL 85
+QSL + + IT + IA V + T + + + GG+ G NL I +F
Sbjct: 37 RQSLRLTPALAITGLSAAIA--VLTLQWNTSQNLAFL-GGFN---GDNLSI-----VFRG 85
Query: 86 IIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATG--DIFNLFVFMEITAIT 143
I+ + + +T + S++ V+ + +LL GM +G ++ +FV +E +I+
Sbjct: 86 IVLLSAAVTILLSIRYVEQSGTSLGEFITILLTASLGGMFLSGANELVTIFVSLETLSIS 145
Query: 144 AYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGVALLYG-ATGTLNMAHLAELSTSIN 201
+Y LT Y K + EA++KY+++G S+ FL GV+LLYG A G + +AE
Sbjct: 146 SYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLYGVSLLYGLAGGETQLPAIAEKLGEAQ 205
Query: 202 PIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY 261
P+ + L VI G+A + P + W PD Y+ +P PI S AG R+L
Sbjct: 206 PLALLISLIFVIAGIAFKISAVPFHQWTPDVYEGSPTPIVAFLSVGSKAAGFALAIRLLV 265
Query: 262 LLQKA--NGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLG 319
A W V +A L+++ + AL Q +KR++AYSSI Q G + + G
Sbjct: 266 TAYPALTEQWHFVFTA---LAILSLVLGNVVALAQTSMKRLLAYSSIAQAGFVMIGLIAG 322
Query: 320 TQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAV 379
T+AG + V+++L + + F V + G ++ ++ GL ++ PL L L++ +
Sbjct: 323 TEAGYSSMVYYLLIYLFMNLGGFACVILFSLRTGTDQISEYAGLYQKDPLVTLGLSLCLL 382
Query: 380 STVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTM 430
S G+P F+ K + A QAG +L L S++ YY R++ M
Sbjct: 383 SLGGIPPLAGFFGKLYLFWAGWQAGLYGLVLLALITSVISIYYYIRVIKMM 433
>pir||F83315 NADH dehydrogenase I chain N PA2649 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948718|gb|AAG06037.1|AE004693_8 (AE004693) NADH
dehydrogenase I chain N [Pseudomonas aeruginosa]
Length = 486
Score = 167 bits (418), Expect = 3e-40
Identities = 116/413 (28%), Positives = 208/413 (50%), Gaps = 24/413 (5%)
Query: 81 ALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATG---MIATGDIFNLFVFM 137
A F + + +VS + V A L+LLL+L G +++ + +LF+ +
Sbjct: 73 ACFYMALVLVSALACVTLAHAYMESYPGNREELYLLLLLATAGGLVLVSAQHLASLFIGL 132
Query: 138 EITAITAYALTAY---NKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHL- 193
E+ ++ Y + AY NK + EA +KY VL GS+F L G+ALLY +GTL A L
Sbjct: 133 ELLSVPVYGMVAYAFFNK--RSLEAGIKYTVLSAAGSAFLLFGMALLYAESGTLGFAGLG 190
Query: 194 AELSTSI--NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKA 251
A+++ + P+V+ VG+ +++ GL + L P + W PD Y+ AP P++ F A K
Sbjct: 191 AKVAEHVLSGPLVS-VGVGMMLVGLGFKLSLVPFHLWTPDVYEGAPAPVSA-FLATASKV 248
Query: 252 GLYAMARILYLLQKANGWSSVLRLVL-IMATLTVIFAELSALRQRDVKRMIAYSSIGQIG 310
++A+ L+ + A + +L + L ++A +++F L AL Q ++KR++ YSSI +G
Sbjct: 249 AVFAVLLRLFQIAPAALDNQLLNISLSVIAVASILFGNLLALTQSNIKRLLGYSSIAHLG 308
Query: 311 LIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE---LEKFEGLGKRM 367
+ +A V+A ++ + + F + + G + L ++ GL R
Sbjct: 309 YLLVALIASKGMAVEAVGVYLATYVLTSLGAFGVITLMSTPYSGRDADALFEYRGLFWRR 368
Query: 368 PLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLV 427
P+ +T+ +S G+PL F KF +I +++ W ++ S + YY R++
Sbjct: 369 PVLTAVMTVMMLSLAGIPLTAGFIGKFYVIAVGVESHLWWLIGALVLGSAIGLYYYLRVM 428
Query: 428 HTMWFSGSGERVKE---GWIV----IFLLLLAVLVVAIGIYPTPAWEIVKRAG 473
T++ G R + W I L+ +A+L +G+YP P EI++ +G
Sbjct: 429 VTLFLVEPGIRQHDAPFNWGQRAGGIMLVAIALLAFFLGVYPQPLLEILQHSG 481
>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 933
Score = 167 bits (418), Expect = 3e-40
Identities = 136/487 (27%), Positives = 234/487 (47%), Gaps = 44/487 (9%)
Query: 4 VASLLIALPLISAFFVPVLKRIKQSL------IMPYLILITLIQTGIAGWVFYEVYTTGK 57
+ +L+IALP + A + +R ++L + P + LI L+ G G VF T
Sbjct: 2 ILALIIALPFMGALLPLLAERGGRTLCAASAGVAPLIGLILLL--GQRGTVFAGQTLTA- 58
Query: 58 PIIIMAGGWRPPVGINLYI-----GPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAM 112
+ W P +GINL + G AL +L I ++ + A + + + EP+ ++
Sbjct: 59 -----SYSWLPEIGINLSLRLDGLGFLFALLILGIGLLVILYARYYLS--EQEPMGRFFA 111
Query: 113 LFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAY--NKTGEAAEASMKYIVLGGIG 170
LL M G++ ++ + +F E+T+++++ L + +++ A M V GG G
Sbjct: 112 FLLLFMGSMLGVVLAENLLLMMLFWELTSLSSFLLIGFWGSRSDARKGARMALTVTGG-G 170
Query: 171 SSFFLIGVALLYGATGTLNMAHLAELSTSINP-IVAQVGLALVIFGLAVEAELFPLNAWA 229
L GV LL G+ + + I + + L L++ G+ ++ FP + W
Sbjct: 171 GLALLAGVLLLGHIAGSFELTEVLAAGELIRAHALYPLVLILILLGVFTKSAQFPFHFWL 230
Query: 230 PDAYQAAPHPITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAE 288
P A AAP P++ + SA +VKAG++ +AR LY W LV + +T++
Sbjct: 231 PHA-MAAPTPVSAYLHSATMVKAGVFLLAR-LYPALAGTEW--FFYLVSLSGLVTLLLGA 286
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV 348
AL Q D+K ++AYS+I +GLI L F L + A VFH++NHA KA +F+ G +
Sbjct: 287 GMALFQHDLKGLLAYSTISHLGLITLLFGLDSPLSNVAAVFHIINHATFKASLFMAAGII 346
Query: 349 GITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ----AG 404
G ++ G+ K +P TA+ + +++ GVPL N F SK TL
Sbjct: 347 DHETGSRDMRLINGMWKYLPHTAVLAIVASLAMAGVPLLNGFLSKEMFFGETLSQNLLGS 406
Query: 405 FIW--PAILVLFASMVEAVYYFRLVHTMWFSGSGERVKE-------GWIVIFLLLLAVLV 455
F W PA+ L A + Y R +H ++F+G R+ + ++ + + +L L
Sbjct: 407 FNWLVPAVATL-AGVFSVAYSLRFIHDVFFNGEPARLPKFPPHEPPRYMKVPVEILVFLC 465
Query: 456 VAIGIYP 462
+ +G+ P
Sbjct: 466 LLVGMLP 472
>sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >gi|7431989|pir||S74569
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Synechocystis sp. (strain PCC 6803)
>gi|1651794|dbj|BAA16721.1| (D90900) NADH dehydrogenase
subunit 2 [Synechocystis sp.]
Length = 521
Score = 166 bits (416), Expect = 5e-40
Identities = 117/437 (26%), Positives = 213/437 (47%), Gaps = 33/437 (7%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
++ + L+ V ++ K +L +PYL + L+ +++ +
Sbjct: 21 IVIVTLLLVLIVDLIGGRKVALALPYLAIAGLL--------------VSVGLLVTSWSMA 66
Query: 68 PPVGINLYIGPF-----AALFVLIIAVVSFITAVFSVKAVKVE--PIDKYAMLFLLLMLG 120
P+G +IG F + +F IIA+ + +T + SV+ V+ + ++ + L LG
Sbjct: 67 DPIG---FIGAFNGDNLSIIFRAIIALSTVVTILMSVRYVQQTGTSLAEFIAILLTATLG 123
Query: 121 ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGVA 179
+ A ++ +F+ +E+ +I++Y +T Y K + EA++KY+++G S+ FL G++
Sbjct: 124 GMFLSAANELVMVFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGASSSAIFLYGLS 183
Query: 180 LLYGATG-TLNMAHLAELSTSINPIVAQVGLAL----VIFGLAVEAELFPLNAWAPDAYQ 234
LLYG +G + +AE + + + +GLA+ VI G+A + P + W PD Y+
Sbjct: 184 LLYGLSGGETQLVLIAEKLVNADTVGQSLGLAIALVFVIAGIAFKISAVPFHQWTPDVYE 243
Query: 235 AAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLI-MATLTVIFAELSALR 293
+P P+ S AG R+L + G + ++ +A L+++ + AL
Sbjct: 244 GSPTPVVAFLSVGSKAAGFAVAIRLL--VTAFGGITDEWHVIFTALAVLSMVLGNVVALA 301
Query: 294 QRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG 353
Q +KRM+AYSSIGQ G + + G++ G + VF+ML + + F + + G
Sbjct: 302 QTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIYLFMNLGAFSCIILFTLRTG 361
Query: 354 GTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL 413
++ + GL + PL L L+I +S G+P F+ K I A Q+G +L L
Sbjct: 362 SDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFWAGWQSGLYGLVLLGL 421
Query: 414 FASMVEAVYYFRLVHTM 430
S+V YY R+V M
Sbjct: 422 VTSVVSIYYYIRVVKMM 438
>gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1]
Length = 489
Score = 166 bits (415), Expect = 7e-40
Identities = 113/410 (27%), Positives = 202/410 (48%), Gaps = 24/410 (5%)
Query: 44 IAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSV---K 100
+ G + +VY T + P V + L LF L+ + + + +S+ +
Sbjct: 2 VPGAIAGDVYVTTLSTFV------PGVSLALRADALGVLFALLASTLWLAASFYSIGYMR 55
Query: 101 AVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEAS 160
+ +Y F + A + ++ L++ E+ + Y L +++T A A
Sbjct: 56 GLGEHSQTRYFAAFAGSIASAIAVAFAANLVVLYLAYELLTVATYPLVVHDETDAARAAG 115
Query: 161 MKYIVLGGIGSSFFLIGVALLYGATGTLNMAH--LAELSTSINPIVAQVGLALVIFGLAV 218
KY+ G L GV L+Y ATGT A + L+T+ +P +A+ L+I G V
Sbjct: 116 RKYLAYTFGGGVAVLAGVVLVYHATGTTAFAPGGIGGLATA-DPTLARAAFGLLITGFGV 174
Query: 219 EAELFPLNAWAPDAYQAAPHPITVMFSAF-VVKAGLYAMARILYLLQKAN--GWSSVLRL 275
+A L PL++W PDA AP P++ + A VVK+G++ +AR+L + + +V
Sbjct: 175 KAALMPLHSWLPDA-MVAPTPVSGLLHAVAVVKSGVFGIARVLLDVYGIDLVAHLNVGMA 233
Query: 276 VLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQA-GVDA-------G 327
V ++A +T+I A + ALRQ ++KR +A+S++ Q+ I L ++G G DA G
Sbjct: 234 VAVVAAITLIVASVIALRQDNLKRRLAFSTVSQLSYIVLGLAVGAATPGADATKWALIGG 293
Query: 328 VFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLF 387
+ H+ HA +K +F G + + ++ G+GKRMPLT A + A G+PL
Sbjct: 294 LLHIPAHAFMKLTLFFCAGALHVETHTDDISDMAGIGKRMPLTMTAFAVAAAGMAGIPLV 353
Query: 388 NVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGE 437
F SK+ +++ T+ G + +L + ++ Y++ +V+T +F G+
Sbjct: 354 AGFVSKYFLLIGTVTGGHLVFTAALLVSGVLNIAYFWPVVYTAFFESQGD 403
>sp|P29926|NQOE_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NADH DEHYDROGENASE 1,
CHAIN 14) (NDH-1, CHAIN 14) >gi|477061|pir||A47751 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Paracoccus denitrificans >gi|150616|gb|AAA25600.1|
(L02354) NADH dehydrogenase [Paracoccus denitrificans]
Length = 499
Score = 165 bits (414), Expect = 9e-40
Identities = 99/365 (27%), Positives = 186/365 (50%), Gaps = 17/365 (4%)
Query: 109 KYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLG 167
++ ++ L +LG M++ GD+ L++ +E+ ++ Y + A + ++EA +KY VLG
Sbjct: 105 EFPIIVALAVLGMMFMVSAGDLLTLYMGLELQSLALYVVAAMRRDSVRSSEAGLKYFVLG 164
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHL-AELSTSINPIVAQVGLALVIFGLAVEAELFPLN 226
+ S L G +L+YG GT + + + + GL ++ GL+ + P +
Sbjct: 165 SLSSGLLLYGASLVYGFAGTTGFEGIISTIEAGHLSLGVLFGLVFMLVGLSFKVSAVPFH 224
Query: 227 AWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY--LLQKANGWSSVLRLVLIMATLTV 284
W PD Y+ +P P+T F+ A + +AR+++ WS + V +A +++
Sbjct: 225 MWTPDVYEGSPTPVTAFFATAPKVAAMALIARLVFDAFGHVIGDWSQI---VAALAVMSM 281
Query: 285 IFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMF-- 342
++ + Q ++KR++AYSSI +G + + GT GV + +M +A++ F
Sbjct: 282 FLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAF 341
Query: 343 -LGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
L + G+ + T+L P+ ALA+ + S GVP F++KF ++ A +
Sbjct: 342 ILSMERDGVPV--TDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAV 399
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKE-----GWIVIFLLLLAVLVV 456
AG W A+L + AS++ A YY R+V+ M+F G E + ++ + + LA+LV
Sbjct: 400 DAGMGWLAVLGVIASVIGAFYYLRIVYYMYFGGESEGMTSRMGAVQYLALMVPALAMLVG 459
Query: 457 AIGIY 461
AI ++
Sbjct: 460 AISMF 464
>gb|AAF03177.1|AF110138_9 (AF110138) NADH dehydrogenase subunit 2 [Nephroselmis olivacea]
Length = 496
Score = 165 bits (413), Expect = 1e-39
Identities = 107/387 (27%), Positives = 195/387 (49%), Gaps = 26/387 (6%)
Query: 73 NLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPID--KYAMLFLLLMLGATGMIATGDI 130
+L I PFA+ +I + S + S+ +K + +Y +L L M++ D
Sbjct: 78 SLLIDPFASFLKGLIILCSICAILMSLDYLKQKSFHAFEYVILILFSTCSMLIMVSAYDF 137
Query: 131 FNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
++++ +E+ ++ Y L A ++ E + EA +KY +L S L G +++YG TG N
Sbjct: 138 LSMYLAIELQSLCFYVLAASKRSSEFSTEAGLKYFILSAFASGIILFGCSMIYGLTGITN 197
Query: 190 MAHLAELSTSINPIVAQV------GLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVM 243
L T I + G+ + GL + P + WAPD Y+ +P P+T
Sbjct: 198 FGELVIFFTGNAAIPFHLSSGILLGILFISVGLLFKLTAAPFHMWAPDVYEGSPTPVTAF 257
Query: 244 FSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATL-TVIFAELSALRQRDVKRMIA 302
F A V K + + I +LL +V + ++I +L +++ L+AL Q+ +KRM+A
Sbjct: 258 F-AIVPKLAILGLF-IRFLLFSCYDLMNVCQSIIIFCSLASMMIGALAALSQKRIKRMLA 315
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE-----L 357
+SSIG IG I + F+ GT G+ + + +M ++ + M +G V ++L +
Sbjct: 316 FSSIGHIGYILMGFACGTIDGMQSLLLYM----VIYSFMTIGAFAVVLSLQHQSPSMKYI 371
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASM 417
E F LGK P+ A+ +++ S G+P F++K+ I +A +++G+ W A + + S+
Sbjct: 372 EDFTMLGKMNPIIAVTMSMILFSMAGIPPLAGFFAKYYIFLAAIESGWYWLATIGVLTSV 431
Query: 418 VEAVYYFRLVHTMWFSGSGERVKEGWI 444
+ YY R++ M+F ++GWI
Sbjct: 432 ISCFYYIRIMKIMYF-----EKRKGWI 453
>gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH regulation related protein A
[Bacillus firmus]
Length = 805
Score = 165 bits (413), Expect = 1e-39
Identities = 133/498 (26%), Positives = 240/498 (47%), Gaps = 63/498 (12%)
Query: 11 LPLISAFFVPVLKRIKQS---LIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
LP++ F +RI L++P ++ I IQ + + +TG ++ W
Sbjct: 14 LPILIPFLYKYARRIHTGWFVLVLPLVLFIYFIQ-------YLSITSTGG-VVEHTIPWV 65
Query: 68 PPVGIN--LYIGPFAALFVLIIAVVSFITAVFSV--KAVKVEPIDKYAMLFLLLMLGATG 123
P +GIN +++ + LF L+I + + ++S+ + K E ++ + + L+ M G
Sbjct: 66 PSLGINFTVFVDGLSLLFALLITGIGTLVILYSIFYLSKKTESLNNFYVYLLMFMGAMLG 125
Query: 124 MIATGDIFNLFVFMEITAITAYALTAY----NKTGEAAEASMKYIVLGGIGSSFFLIGVA 179
++ + ++ L+VF E+T++ + L +Y K+ A+ SM V GG L G +
Sbjct: 126 VVLSDNLIVLYVFWELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFA---MLGGFS 182
Query: 180 LLYGATGTLNMAHLAE---LSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAA 236
LLY TGT ++ + E L TS + + LV+ G ++ FP + W PDA +A
Sbjct: 183 LLYVMTGTFSIRGIIENVDLVTSSELFLP--AMILVLLGAFTKSAQFPFHIWLPDAMEA- 239
Query: 237 PHPITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQR 295
P P++ + SA +VKAG+Y +AR+ + + W L+ +T+++ SA+RQ+
Sbjct: 240 PTPVSAYLHSATMVKAGIYLVARLTPVFAGSAEW---FWLLTGFGVVTLLWGSTSAVRQK 296
Query: 296 DVKRMIAYSSIGQIGLIALAFSLGTQA--------------GVDAGVFHMLNHAIVKAMM 341
D+K ++A+S++ Q+GLI LG+ A + A +FH++NHA K +
Sbjct: 297 DLKGILAFSTVSQLGLIMTLLGLGSAAIYFGESVDPAFYSFAIMAAIFHLINHATFKGSL 356
Query: 342 FLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
F+ + G ++ K GL MP+T IG S G+P FN F SK A L
Sbjct: 357 FMTACIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLASMAGLPPFNGFLSKEMFFTALL 416
Query: 402 QA------GFIWPAILVLFASMVEAVYYFRLVHTMWF-SGSGERVKEGW----------I 444
+A I+++ + + +V+ F M+F + +G+ E + +
Sbjct: 417 RATEMNAFNMETFGIIIVVLAWIASVFTFLYCLIMFFKTFTGKFKPENYDVKVHEAPIGM 476
Query: 445 VIFLLLLAVLVVAIGIYP 462
+I ++L LV+ G +P
Sbjct: 477 LISPVILGSLVIVFGFFP 494
>emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti]
Length = 725
Score = 164 bits (410), Expect = 3e-39
Identities = 104/379 (27%), Positives = 187/379 (48%), Gaps = 17/379 (4%)
Query: 66 WRPPVGIN--LYIGPFAALFVLIIAVVSFITAVFS-VKAVKVEPIDKYAMLFLLLMLGAT 122
W P +G+N L + FA LF +I + + +++ + +P+ ++ LFL M
Sbjct: 91 WVPELGLNFTLRMDGFAWLFSALITAIGVLVVLYARYYMAEEDPVPRFFALFLAFMGSML 150
Query: 123 GMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLIGVALL 181
G++ +G++ L VF E+T+I ++ L Y + A +A+ + + G G +G+ ++
Sbjct: 151 GVVLSGNLILLAVFWELTSIVSFLLIGYWHHNAHARDAARMALTITGTGGLAMFVGLIII 210
Query: 182 YGATGTLNMAHLAELSTSI--NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHP 239
G+ + + +I +P+ V L LV+ G ++ FP + W P A AAP P
Sbjct: 211 GKIVGSYELDAVLASGDAIRNHPLYGTV-LVLVLLGALTKSAQFPFHFWLPHA-MAAPTP 268
Query: 240 ITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
++ + SA +VKAG++ + R ++ W ++ L T++ A+ Q+D+K
Sbjct: 269 VSAYLHSATMVKAGVFLLVRFWPVMAGTEAWFWIVGLA---GLTTLLLGAYFAIFQQDLK 325
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELE 358
++AYS+I +GLI + SLG+ A VFH++NHA KA +F+ G + G ++
Sbjct: 326 GLLAYSTISHLGLITVLLSLGSPLAAVAAVFHIVNHATFKASLFMAAGIIDHESGTRDIR 385
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWP-----AILVL 413
+ GL MP+TA + + + GVPL N F SK ++ + P +
Sbjct: 386 RLGGLFHFMPITATLAMVASAAMAGVPLLNGFLSKEMFFAEAIETHLVNPLDTVTPYVAT 445
Query: 414 FASMVEAVYYFRLVHTMWF 432
A M Y R +H ++F
Sbjct: 446 IAGMFAVTYSLRFIHGVFF 464
>pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Synechocystis sp. (PCC 6803) >gi|217097|dbj|BAA14330.1|
(D90288) ORF for 55kD protein [Synechocystis sp.]
Length = 521
Score = 163 bits (408), Expect = 5e-39
Identities = 116/437 (26%), Positives = 212/437 (47%), Gaps = 33/437 (7%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
++ + L+ V ++ K +L +PYL + L+ +++ +
Sbjct: 21 IVIVTLLLVLIVDLIGGRKVALALPYLAIAGLL--------------VSVGLLVTSWSMA 66
Query: 68 PPVGINLYIGPF-----AALFVLIIAVVSFITAVFSVKAVKVE--PIDKYAMLFLLLMLG 120
P+G +IG F + +F IIA+ + +T + SV+ V+ + ++ + L LG
Sbjct: 67 DPIG---FIGAFNGDNLSIIFRAIIALSTVVTILMSVRYVQQTGTSLAEFIAILLTATLG 123
Query: 121 ATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGVA 179
+ A ++ +F+ +E+ +I++Y +T Y K + EA++KY+++G S+ FL G++
Sbjct: 124 GMFLSAANELVMVFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGASSSAIFLYGLS 183
Query: 180 LLYGATG-TLNMAHLAELSTSINPIVAQVGLAL----VIFGLAVEAELFPLNAWAPDAYQ 234
LLYG +G + +AE + + + +GLA+ VI G+A + P + W PD Y+
Sbjct: 184 LLYGLSGGETQLVLIAEKLVNADTVGQSLGLAIALVFVIAGIAFKISAVPFHQWTPDVYE 243
Query: 235 AAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLI-MATLTVIFAELSALR 293
+P P+ S AG R+L + G + ++ +A L+++ + AL
Sbjct: 244 GSPTPVVAFLSVGSKAAGFAVAIRLL--VTAFGGITDEWHVIFTALAVLSMVLGNVVALA 301
Query: 294 QRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG 353
Q +KRM+AYSSIGQ G + + G++ G + VF+ML + + F + + G
Sbjct: 302 QTSMKRMLAYSSIGQAGFVMIGLVAGSEDGYASMVFYMLIYLFMNLGAFSCIILFTLRTG 361
Query: 354 GTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL 413
++ + GL + PL L L+I +S G+P F+ K I A Q+ +L L
Sbjct: 362 SDQISDYAGLYHKDPLLTLGLSICLLSLGGIPPLAGFFGKIYIFWAGWQSRLYGLVLLGL 421
Query: 414 FASMVEAVYYFRLVHTM 430
S+V YY R+V M
Sbjct: 422 VTSVVSIYYYIRVVKMM 438
>pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyrococcus abyssi
(strain Orsay) >gi|5458893|emb|CAB50380.1| (AJ248287)
HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 647
Score = 162 bits (405), Expect = 1e-38
Identities = 112/411 (27%), Positives = 207/411 (50%), Gaps = 24/411 (5%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK--YAMLFLLLMLGATGMIAT 127
+G+ +YI F+ +F+LI+ ++ F +++S+ ++ P + YA+ + +L ++ T
Sbjct: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
Query: 128 GDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFL-IGVALLYGATG 186
++ F E+ ++++ L +++ + + +KY + I ++F L I + + Y G
Sbjct: 115 SNLVWFVFFWELMTLSSFILITWDE--KDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
Query: 187 TLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSA 246
+L+ L S+ + A + ++ + P + W P Y+ AP I+ + +
Sbjct: 173 SLDAMTYPNLK-SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAG 231
Query: 247 FVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSI 306
+ K ++ + RI+Y S+ LV ++ +T+ L ALR+ D K+++AY SI
Sbjct: 232 AMEKIAVFGLIRIMYTALPTP--KSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
Query: 307 GQIGLIALAFSLGTQA-------GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEK 359
GQ+G I L +G G+ AG+FH LNH++ K +FL G V G T L+
Sbjct: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDN 349
Query: 360 FEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAG---FIWPAILVLFAS 416
GL +RM T LA + +++ GVP FN F SK+ I A +G + A+L +F S
Sbjct: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
Query: 417 MVEAVYYFRLVHTMWFSGSGERVKEG-----WIVIFLLLLAVLVVAIGIYP 462
V + + +T F G ER ++ +V+ L+L+ L + IGI+P
Sbjct: 410 AVTLASFIKF-YTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
>pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1b -
Synechocystis sp. (strain PCC 6803)
>gi|1001321|dbj|BAA10808.1| (D64006) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 507
Score = 161 bits (403), Expect = 2e-38
Identities = 112/410 (27%), Positives = 204/410 (49%), Gaps = 20/410 (4%)
Query: 66 WRPPVGINLYIGPFA-ALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGM 124
W P +G+N ++G +L +L++ + A+FS P YA+L LLL G G
Sbjct: 65 WLPSLGLNYHLGVDGLSLPLLLLNSALVVIAIFSTNTEIERPRFYYALL-LLLSGGVAGA 123
Query: 125 IATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGA 184
D+ F+F E+ I Y L A A+MK+++ + L+ +
Sbjct: 124 FLAQDLLLFFLFFELEIIPLYFLIAIWGGQRRGYAAMKFLLYTALSGFLVLVSFLGWFWL 183
Query: 185 TGTLNMAHLAELSTSINPIVAQVGLAL-VIFGLAVEAELFPLNAWAPDAYQAAPHPITVM 243
T N + L+ ++ P+ Q+ L L ++ GL ++ +FP + W PDA+ A P++V+
Sbjct: 184 TKAPNFDYNPSLADAL-PVKTQMLLLLPLLLGLGIKIPIFPFHTWLPDAHVEASTPVSVL 242
Query: 244 FSAFVVKAGLYAMARI---LYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
+ ++K G Y + R LYL W + +A ++ ++ A+ Q+D+K++
Sbjct: 243 LAGVLLKLGTYGLLRFGLGLYL----EAWVEFAPYLATLAAISALYGASCAIAQKDMKKV 298
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKF 360
+AYSSI +G I LA + T+ V A M++H I+ A++FL VG V G +++K
Sbjct: 299 VAYSSIAHMGYILLAAAAATRLSVTAASAQMVSHGIISALLFLLVGVVYKKTGSRDVDKL 358
Query: 361 EGL---GKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASM 417
+GL + +P+T + +G +++ G+P F ++F + + F +L L S
Sbjct: 359 QGLLTPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPI-FPTQTLLCLIGSG 417
Query: 418 VEAVYYFRLVHTMWFSGSGERV----KEGW-IVIFLLLLAVLVVAIGIYP 462
+ AVY+ +++ ++F + K W I + LAV+++A+GI P
Sbjct: 418 LTAVYFLLMINRVFFGRLTMELSHLPKVRWQEQIPAIALAVVIIALGIQP 467
>sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|7432362|pir||C71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain M RP793 - Rickettsia
prowazekii >gi|3861320|emb|CAA15219.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii]
Length = 491
Score = 161 bits (403), Expect = 2e-38
Identities = 116/472 (24%), Positives = 229/472 (47%), Gaps = 17/472 (3%)
Query: 4 VASLLIALPLISAFFVPVL--KRIKQSLIMPYLILITLIQTGIAG-WVFYEVYTTGKPI- 59
+ S+ I LPLIS ++ + + K + Y+ +++ + T I+ ++ E +
Sbjct: 6 IISITIFLPLISVLYILLFFNQNKKADKLSIYVAMLSSVLTFISTIYILIEFDVSNNTYQ 65
Query: 60 IIMAGGWRPPVGINLYIGP--FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
+ W +G+ ++G A FV++ + ++ I + S+ +K + I +Y + FLL+
Sbjct: 66 FVERYTWLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIK-KYIKEYLVCFLLM 124
Query: 118 MLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIG 177
G + ++ ++F E + Y + A++K+ + GS FFL+
Sbjct: 125 ESLCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLLA 184
Query: 178 VALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIF-GLAVEAELFPLNAWAPDAYQAA 236
+ +Y + ++ ++ EL +I P+ AQ L IF A++ + P + W PDA+ A
Sbjct: 185 LIYIYSKIHSFDLTNILELIGNI-PLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQA 243
Query: 237 PHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRD 296
P +V+ + ++K G Y R+L L N V+ ++ + +I+A L AL Q+D
Sbjct: 244 PTTGSVILAGILLKLGGYGFLRVLLPLFP-NASQEFAIYVIYLSVIAIIYASLVALAQKD 302
Query: 297 VKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE 356
+K+MIAYSSI +G + + T+ G+ +F ML+H I+ + +FL VG + L E
Sbjct: 303 IKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKE 362
Query: 357 LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFAS 416
+ K+ G+ +MP+ A I +S++G+P + F +F ++ + + A +
Sbjct: 363 IAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVV-TAFIAALGI 421
Query: 417 MVEAVYYFRLV-HTMWFSGSGERVKE-----GWIVIFLLLLAVLVVAIGIYP 462
++ AVY +L M + +K + +I + L +L++ G+ P
Sbjct: 422 ILGAVYMLKLYKEVMLGEITNTEIKHFRDLYKYEIISIAPLILLIIYFGLMP 473
>emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related protein
[Thermoplasma acidophilum]
Length = 635
Score = 160 bits (400), Expect = 4e-38
Identities = 119/447 (26%), Positives = 229/447 (50%), Gaps = 32/447 (7%)
Query: 53 YTTGKPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK-YA 111
+T K I + W + +YI A + ++++ VS + +F++ +K +P Y
Sbjct: 52 FTVIKHPIYNSYTWFYNIDFGIYIDNLAIVMAMMVSFVSLMIHLFAIYYMKDDPNKHVYF 111
Query: 112 MLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIG 170
L G G++ + ++ LF+F E+ + +Y L + A A+ K ++ +G
Sbjct: 112 AETALFTAGMLGLVISSNLVLLFLFWELVGLCSYLLIGFWFFKPNATAAAKKAFIVTRVG 171
Query: 171 SSFFLIGVALLYGAT-----GTLNMAHLAELSTSINPIVAQVGLALV---IFGLAV-EAE 221
F+IG+++LY + L++ +L ++SI + +V L ++ I G A+ ++
Sbjct: 172 DLSFIIGMSILYYSLINVTKDPLSIPYLISNASSIAVAIGKVRLGIIAIFILGAAIGKSA 231
Query: 222 LFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMAT 281
FPL+ W PDA + ++ +A +V AG+Y +AR+ + A ++ + V I+ +
Sbjct: 232 QFPLHVWIPDAMEGPTTVSALIHAATMVTAGVYLVARLFQVFLYAAPFA--MYAVAIVGS 289
Query: 282 LTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAG---VDAGVFHMLNHAIVK 338
T ++A + L DVKR++AYS+I Q+G + A L G V G+FH+++HAI K
Sbjct: 290 FTALYAGIVGLVVNDVKRILAYSTISQLGYMLAAIGLAPIIGGVAVSLGMFHLISHAIFK 349
Query: 339 AMMFLGVG-YVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
A++F+ G ++ + + ++ GL KRMP+T IG+++ V P + ++SK II
Sbjct: 350 ALLFMSAGAFLVAMMDLRDAKQMGGLWKRMPVTTTLFFIGSLALVAFPGTSGYFSKDPII 409
Query: 398 VATLQ--------AGFIWPAILVLFASMVEAVYYFRLVHTMWF----SGSGERVKEGWIV 445
A+ AGF+ P + ++ S++ +Y FR+ + S ER ++ IV
Sbjct: 410 FASYNYFTKSLSVAGFL-PLLFLMTGSLLTTLYTFRMFFLVAVGKPRSTLAERARDPPIV 468
Query: 446 IF--LLLLAVLVVAIGIYPTPAWEIVK 470
L++L++ + +G++ P + VK
Sbjct: 469 ALLPLMVLSIFALILGVWQVPFYSFVK 495
>gi|11466553 NADH dehydrogenase, subunit 2 [Reclinomonas americana]
>gi|7431986|pir||S78184 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - Reclinomonas americana (ATCC
50394) mitochondrion >gi|2258383|gb|AAD11917.1|
(AF007261) NADH dehydrogenase, subunit 2 [Reclinomonas
americana]
Length = 498
Score = 159 bits (399), Expect = 5e-38
Identities = 126/477 (26%), Positives = 225/477 (46%), Gaps = 46/477 (9%)
Query: 29 LIMPYLIL-ITLIQTGIAGWVFYEVYTTGKPIIIMAGGW--------------RPPVGIN 73
++ P L L I+++ + G V+ PIII A GW P+
Sbjct: 13 VLFPELFLTISILALLMYGVVYSTSSHHDNPIIIRATGWLSIQILFLTILLLINNPIHNQ 72
Query: 74 LYIGP------FAALFVLIIAVVSFITAVFSVKAVKVEPID--KYAMLFLLLMLGATGMI 125
+++ F + +++ + S I + S +K E I+ +Y +L LL LG +I
Sbjct: 73 VFMNNLLVADYFGLITKIVLLISSSIAIIISFDYIKKERINSFEYMVLVLLGTLGMLLII 132
Query: 126 ATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGA 184
++ D+ ++++ +E ++ Y L A+ + + EA +KY VLG S L G+++LYG
Sbjct: 133 SSYDLMSMYLAIEFQSLCLYVLAAFKRNSLFSVEAGLKYFVLGAFSSGIMLFGISILYGF 192
Query: 185 TGTLNMAHLAEL--STSINPIVAQVGLAL-VIF---GLAVEAELFPLNAWAPDAYQAAPH 238
TG L +L +S +++ G+ L ++F GL + P + W PD YQ +P
Sbjct: 193 TGVTGFEDLGKLLIFSSNESLLSSSGIILGIVFISVGLLFKIYAVPFHVWVPDVYQGSPT 252
Query: 239 PITVMFSAFVVKAGLYAMARILY---LLQKANGWSSVLRLVLIMATLTVIFAELSALRQR 295
+T F A V + + LY L W V + + +++ L AL QR
Sbjct: 253 IVTAFF-AIVPSISVLTLLTRLYSSVLHDLIQYWQPVF---IFCSIASMLIGSLGALSQR 308
Query: 296 DVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGT 355
+KR++AYS+IG +G + +A S GT G+ + +++ + I+ A F + + T
Sbjct: 309 RIKRLLAYSAIGHVGYVLIALSTGTPEGIRGLLVYIVIYIIMSACFFTILLSLRKRENNT 368
Query: 356 E---LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILV 412
+ +++ L K P+ +L L I S G+P F+SK + + + G ++
Sbjct: 369 QIVMIDELRALYKSNPILSLTLAIVLFSMAGIPPLAGFFSKLYVFLPAIHEGLFLLVVVG 428
Query: 413 LFASMVEAVYYFRLVHTMWFSG-----SGERVKEGWIVIFLLLLAVLVVAIGIYPTP 464
+ AS++ AVYY L+ M+F S E+V + ++ L L L++ IYP+P
Sbjct: 429 IIASVISAVYYLGLIKIMYFDKLDTWVSFEQVDKQKAIV-LGLTTFLILFFFIYPSP 484
>gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei]
Length = 495
Score = 159 bits (398), Expect = 7e-38
Identities = 126/496 (25%), Positives = 242/496 (48%), Gaps = 22/496 (4%)
Query: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEV-YTTGKPI 59
M VASLLI +PLI A V + KQ L + L +L G+ + + +T
Sbjct: 1 MLPVASLLILVPLIFAV-VTFFTKTKQ-LAAGFGFLGSLATLGLTLYAYLNFDSSTAAMQ 58
Query: 60 IIMAGGWRPPVGINLYIGPFAALFVLII--AVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
+ W P +G+N +G LI+ A+V +F+ K ++E +++ L L +
Sbjct: 59 FYESVSWIPFLGVNYSVGIDGVSMPLILLNAIVIPFMILFTWKE-EMESPNRFYGLILTM 117
Query: 118 MLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIG 177
G+ D ++F E+T + + + A AS K+ + + S L+G
Sbjct: 118 QAAVIGVFVALDFVVFYIFWELTLVPLFFIVNLWGGANRAHASYKFFIYTHVASLVMLLG 177
Query: 178 V-ALLYGA---TG--TLNMAHLAELSTSINPIVAQVGLAL-VIFGLAVEAELFPLNAWAP 230
+ L Y A TG T ++ L P + + G+ L ++FG + FP ++W P
Sbjct: 178 IFGLFYTALNQTGVPTFDIRELIAQFQFFEPGLMKDGIFLAILFGFLAKLPAFPFHSWLP 237
Query: 231 DAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVL-IMATLTVIFAEL 289
DAY AP +++F ++K G Y + RI + G ++ ++L ++ ++++++ L
Sbjct: 238 DAYSEAPTAGSILF--ILLKIGGYGLFRISLPMLPNTGSPQLMIMILGLLGSVSILYGAL 295
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVG 349
ALRQ+D+KRMIAYSS+ +G + L + V +F +H ++ ++MF+ G +
Sbjct: 296 LALRQKDLKRMIAYSSLSHMGYVILGSAGLVTLSVSGAMFQQFSHGLIMSIMFMSAGAIQ 355
Query: 350 ITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPA 409
G + + GL K+MP+ +A+ +G ++++G+P F ++F ++ T ++
Sbjct: 356 TAAGTRIINELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLTFTFTNLPVF-V 414
Query: 410 ILVLFASMVEAVYYFRLVHTMWFSGSGERVKE----GWIVIF-LLLLAVLVVAIGIYPTP 464
++ L A +V A Y+ + F E++ + I +F + ++A+LV+ G+ P+P
Sbjct: 415 VIALLAIVVTAGYHLWAMQRAMFGVYNEKLGDVRDINSIQVFSMAVIALLVLYFGLNPSP 474
Query: 465 AWEIVKRAGSDIFAVA 480
+++ I ++A
Sbjct: 475 VLDMMINNSEAIVSLA 490
>pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN2 -
Aquifex aeolicus >gi|2983796|gb|AAC07354.1| (AE000737)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 488
Score = 157 bits (394), Expect = 2e-37
Identities = 114/417 (27%), Positives = 210/417 (50%), Gaps = 19/417 (4%)
Query: 69 PVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATG 128
P+ + + I FA L L A++ F ++ FS K ++ + +LG + +T
Sbjct: 81 PLAVTVKI--FAVLITL--AILPFASSYFSAKK---SFYGEFYYILAFTLLGVFVLASTY 133
Query: 129 DIFNLFVFMEITAITAYALTAYNK-TGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGT 187
++ L+V +E+ ++ Y LTA + + EA E + KY++LGG+ + G A +Y +G+
Sbjct: 134 NLIILYVALELVSVGFYILTALLRGSTEAKEGAFKYLILGGLSIALASYGAAFMYIYSGS 193
Query: 188 LNMAH-LAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSA 246
L++ L I+ +V +GL + GLAV+ P + W PDAYQ AP P+T + ++
Sbjct: 194 LDLREILTYQGKDIHYLV--LGLVFFLIGLAVKIGAVPFHYWVPDAYQGAPTPVTALMAS 251
Query: 247 FVVKAGLYAMARILYLLQKANGWSSVLRLVL-IMATLTVIFAELSALRQRDVKRMIAYSS 305
A + R++ L+Q+ +S V + + ++A LT+++ L AL Q+DVKR++AYSS
Sbjct: 252 VGKLAFFIPLVRVMPLVQEK--FSLVWTITVGVIAALTMLYGNLVALVQKDVKRLLAYSS 309
Query: 306 IGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE-LEKFEGLG 364
I G I ++ G+ A ++ ++ +A++ A FL + + +E F GL
Sbjct: 310 IAHSGYIMAGAAVAKVIGMKAVIYFLVAYAVMSAGAFLVLALMEKNPEWQNYMENFYGLR 369
Query: 365 KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYF 424
P A A + V+ +GVP F K + +A W A +++ ++ + YY
Sbjct: 370 FNAPYIAFAFFVYMVALLGVPPTVGFVGKALVFMALSFDKLWWLAFIMILSAAISTGYYI 429
Query: 425 RLVHTMWFSGSGERVKEG----WIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIF 477
RLV M+ + ++ L L + V +G+ P+ W ++K++ ++F
Sbjct: 430 RLVVVMYMHEREKEIRSAPSHLGEKFSLFALTLASVLLGVLPSLVWFLIKQSAENLF 486
>pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Sarcophyton
glaucum mitochondrion >gi|4091913|gb|AAC99647.1|
(AF064823) NADH dehydrogenase subunit 2 [Sarcophyton
glaucum]
Length = 457
Score = 157 bits (393), Expect = 3e-37
Identities = 95/323 (29%), Positives = 170/323 (52%), Gaps = 16/323 (4%)
Query: 111 AMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGI 169
++L LL++LG +I ++ ++++ +E+ + + L AYNK +AEA +KY VLG +
Sbjct: 84 SLLILLVILGNLLLIGATNLISIYLALEMQTLCMFILVAYNKNSLLSAEAGLKYFVLGAL 143
Query: 170 GSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWA 229
S FL G AL+YG+TG L + + + S + G L+ L + P + WA
Sbjct: 144 SSGLFLFGCALIYGSTGELELQFIRMCTVSYGTLA---GKCLITISLLFKVSAAPFHMWA 200
Query: 230 PDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
PD Y+ AP +T + S V K G+ A+ + L +LI +++I +
Sbjct: 201 PDVYEGAPTWVTALLS-IVPKLGVLAIIVQIGLNDMG---------LLIAGLISLIVGAI 250
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVG 349
AL Q +KR++AYS I +G + L ++G+ + A + ++ + I + +++ V +
Sbjct: 251 GALNQTRIKRLLAYSGISHMGFVLLGIAIGSIESLQASLMYIGAYVITQILLWSVV--LI 308
Query: 350 ITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPA 409
I+ + +F G+ + P+ ALAL G +ST G+P F +K+ +I+ + G+ A
Sbjct: 309 ISPKRDMIIEFSGVSRLNPMLALALAAGLLSTAGIPPLIGFLTKWYVILVAVGQGYYISA 368
Query: 410 ILVLFASMVEAVYYFRLVHTMWF 432
+ L S++ VYY RLV M++
Sbjct: 369 LTALICSVIAGVYYLRLVKIMFY 391
>pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (strain MSB8)
>gi|4981765|gb|AAD36287.1|AE001778_8 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 626
Score = 157 bits (393), Expect = 3e-37
Identities = 106/411 (25%), Positives = 203/411 (48%), Gaps = 21/411 (5%)
Query: 83 FVLIIAVVSFITAVFSVKAVKVEPID-KYAMLFLLLMLGATGMIATGDIFNLFVFMEITA 141
FV ++ +VS + +FS K ++ + Y M L++ G+ G+ D+ L+VF EI
Sbjct: 74 FVSLLVIVSVM--LFSTKWLETQKYRASYNMFLLMVTAGSLGVFMAADLITLYVFWEIAV 131
Query: 142 ITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSIN 201
+++ + K EA +A + Y V+ +G+ FL G L Y GTLN+ +A+ +
Sbjct: 132 LSSLLIVPMEKK-EARKAVVVYAVMSAVGTYAFLYGTFLAYQRYGTLNIHGIAQGMLNDT 190
Query: 202 PIVAQVGLALVIFGLAV-EAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARIL 260
I ++ + L++ + ++ +FPL+ W + + AP+ + + S +K G Y +L
Sbjct: 191 SIGFKMAVFLLLSAAGIAKSGIFPLHIWLRETHGLAPNAFSSVLSGQFIKLGNYIFLLVL 250
Query: 261 YLLQKANGWSSVL---------RLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGL 311
++ +S V +++ + ++++ L A++Q D+K ++AYSS+ G
Sbjct: 251 SVIPSLKVFSEVTVYSGIPLPNYILIALGNVSIVIGTLMAIKQDDMKMLMAYSSVANGGY 310
Query: 312 IALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTA 371
I + G + G+FH+ NHA+ A++F+ V ++ + GL +MP+T
Sbjct: 311 ILIGIGTMDPLGFEGGMFHIFNHAVASAVIFMAFAAVIYRTKTQKISEMGGLIHKMPVTF 370
Query: 372 LALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMW 431
L +S G+P + F SK+ I A ++ G A L F S+ +Y FR + +
Sbjct: 371 LVYLFSIISLAGIPPMSGFISKWMIYQALVRKGMFITAFLAFFGSIGSFLYVFRPLAGV- 429
Query: 432 FSGSGER----VKEGWIVIF--LLLLAVLVVAIGIYPTPAWEIVKRAGSDI 476
F G R VKE V+ ++LL ++ +G++P P + +++ D+
Sbjct: 430 FLGQLPRKYRDVKEAPAVMLTPMVLLVLISFFLGVWPFPILQAIEKIRVDL 480
>sp|Q56227|NQOC_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NADH DEHYDROGENASE 1,
CHAIN 12) (NDH-1, CHAIN 12) >gi|7432503|pir||T11909 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 NQO12
[similarity] - Thermus aquaticus thermophilus
>gi|1279872|gb|AAA97949.1| (U52917) NADH dehydrogenase
I, subunit NQO12 [Thermus thermophilus]
Length = 606
Score = 157 bits (392), Expect = 4e-37
Identities = 117/389 (30%), Positives = 200/389 (51%), Gaps = 32/389 (8%)
Query: 60 IIMAGG------WRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDK 109
++++GG W P + +L + + +LI+ V F+ V+++ + +P
Sbjct: 47 LLLSGGARFQAEWLPGIPFSLLLDNLSGFMLLIVTGVGFLIHVYAIGYMGGDPGYSRFFA 106
Query: 110 YAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGG 168
Y LF+ +ML ++ +F+ E + ++ L + K + A+++ K ++
Sbjct: 107 YFNLFIAMMLT---LVLADSYPVMFIGWEGVGLASFLLIGFWYKNPQYADSARKAFIVNR 163
Query: 169 IGSSFFLIGVALLYGATGTLNMAHLAELSTSI--NP-IVAQVGLALVIFGLAVEAELFPL 225
IG F++G+A+L+ GTL+++ L E NP ++A GL L + + A++ PL
Sbjct: 164 IGDLGFMLGMAILWALYGTLSISELKEAMEGPLKNPDLLALAGLLLFLGAVGKSAQI-PL 222
Query: 226 NAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTV 284
W PDA A P P++ + +A +V AG+Y +AR +L V + ++ LT
Sbjct: 223 MVWLPDA-MAGPTPVSALIHAATMVTAGVYLIARSSFLYSVL---PDVSYAIAVVGLLTA 278
Query: 285 IFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLG 344
+ LSA Q D+K+++AYS+I Q+G + LA +G +FH+ HA KA++FL
Sbjct: 279 AYGALSAFGQTDIKKIVAYSTISQLGYMFLAAGVGAYW---VALFHVFTHAFFKALLFLA 335
Query: 345 VGYVGITLGGTE-LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ- 402
G V LGG + + K GL K +P T IGA++ G+PL + FWSK I+ ATL
Sbjct: 336 SGSVIHALGGEQDVRKMGGLWKHLPQTRWHALIGALALGGLPLLSGFWSKDAILAATLTY 395
Query: 403 ----AGFIWPAILVLFASMVEAVYYFRLV 427
GF A+LV + + A+ +F LV
Sbjct: 396 PFGGVGFYVGALLVAVLTAMYAMRWFVLV 424
>sp|P33608|NUON_ECOLI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
14) (NUO14) >gi|7431990|pir||B64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain N - Escherichia coli
>gi|1788612|gb|AAC75336.1| (AE000317) NADH dehydrogenase
I chain N [Escherichia coli K12]
>gi|1799634|dbj|BAA16103.1| (D90858) NADH DEHYDROGENASE
I CHAIN N (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 14) (NUO14). [Escherichia coli]
>gi|1799636|dbj|BAA16104.1| (D90859) NADH DEHYDROGENASE
I CHAIN N (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 14) (NUO14). [Escherichia coli]
Length = 425
Score = 156 bits (391), Expect = 5e-37
Identities = 117/419 (27%), Positives = 199/419 (46%), Gaps = 34/419 (8%)
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKV--EPIDKYAMLFLLLMLGATGMIATGDIFNLFVF 136
FA L+ ++ + S T F+ ++ + D++ +L L+ LG + + +LF+
Sbjct: 12 FAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLG 71
Query: 137 MEITAITAYALTAYN-KTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAE 195
+E+ ++ + L Y + + EAS+KY +L SSF L G+AL+Y +G L+ L +
Sbjct: 72 IELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGK 131
Query: 196 L--STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGL 253
+N + G L+I GL + L P + W PD YQ AP P++ F A K +
Sbjct: 132 NLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST-FLATASKIAI 190
Query: 254 YAMARILYLLQKANGWSSVLRLVL-IMATLTVIFAELSALRQRDVKRMIAYSSIGQIG-- 310
+ + L+L G S +R+VL I+A ++IF L AL Q ++KR++ YSSI +G
Sbjct: 191 FGVVMRLFLYAPV-GDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYL 249
Query: 311 LIAL-AFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL---------GGTELEKF 360
L+AL A G + GV+ + +F +G G+ L +
Sbjct: 250 LVALIALQTGEMSMEAVGVY-------LAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSY 302
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
GL P+ A +T+ +S G+P+ F KF ++ +QA W V+ S +
Sbjct: 303 RGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGL 362
Query: 421 VYYFRLVHTMWFSG---SGERVKEGWIV----IFLLLLAVLVVAIGIYPTPAWEIVKRA 472
YY R+ +++ G W I +L+ A+LV+ +G++P P IV+ A
Sbjct: 363 YYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLA 421
>gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus solfataricus]
Length = 440
Score = 156 bits (390), Expect = 6e-37
Identities = 105/391 (26%), Positives = 196/391 (49%), Gaps = 17/391 (4%)
Query: 75 YIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFN-- 132
+I F F+L+IA + ++ ++S+ +K I + ++LL A+ M+ T + N
Sbjct: 55 FITKFTTFFLLVIASIYLLSTLYSMNYIKPSKIVSERLYYILLNSFASSMLFTVIMNNYG 114
Query: 133 -LFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
++V +E+T +T+ L + + EA+ +YI++ G + L + +Y TL +
Sbjct: 115 LMWVGVELTTVTSALLIIAEASETSLEATWRYIIIVSAGVTLALFSIIFIYYNYHTLTVT 174
Query: 192 HLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKA 251
+ L+ N I+ ++ +AL + G +A +FP+ W PDA+ AP PI+ +FS ++ A
Sbjct: 175 EI--LTKPENNIITKLAVALALIGFGTKAGVFPMYTWLPDAHSEAPSPISALFSGVLLPA 232
Query: 252 GLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGL 311
Y ++Y++ + N +++ +I TL++I A + Q +KRM AYS+I + L
Sbjct: 233 ATY----VVYMVYQVNPLTNIF---VIFTTLSIITASIILTYQWHIKRMFAYSTIENMNL 285
Query: 312 IALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTA 371
L ++G G + +L HA KA F G V LG +E GL ++ LT+
Sbjct: 286 ALLGLTIGQPLG---AIILLLAHAFGKAGAFYSSGIVLKVLGEKRIENIGGLHTKLKLTS 342
Query: 372 LALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMW 431
++L + +++ G P F F +F I+ +Q G+I IL++ + + V M
Sbjct: 343 VSLLLSSLAVTGTPPFATFIGEFFILQTLIQKGYIIEFILIVISLATAFISINYNVTKMI 402
Query: 432 FSGSGERVKE--GWIVIFLLLLAVLVVAIGI 460
F+ V E I L+ +++ + +GI
Sbjct: 403 FTQRELTVSEEPKLITFISLVSSIIPLVLGI 433
>sp|Q56229|NQOE_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 14 (NADH DEHYDROGENASE 1,
CHAIN 14) (NDH-1, CHAIN 14) >gi|7431998|pir||T11911 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO14 -
Thermus aquaticus thermophilus
>gi|1279874|gb|AAA97951.1| (U52917) NADH dehydrogenase
I, subunit NQO14 [Thermus thermophilus]
Length = 431
Score = 155 bits (389), Expect = 8e-37
Identities = 110/351 (31%), Positives = 179/351 (50%), Gaps = 24/351 (6%)
Query: 77 GPFAALFVL-IIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFV 135
GP+A V + +++ + A+++V V+ + Y +L L LG + +T + + V
Sbjct: 51 GPYAVDGVSQVFTLLALLGALWTVGLVRSGGFEFY-LLVLYAALGMHLLASTRHLLLMLV 109
Query: 136 FMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAE 195
+E ++ YAL + + G+ EA++KY +LG + ++FFL G AL YG TG+L + E
Sbjct: 110 ALEALSLPLYALATWRR-GQGLEAALKYFLLGALAAAFFLYGAALFYGDTGSLVLGAPGE 168
Query: 196 LSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYA 255
P+ A + L L++ GL +A L P + W PD YQ +P P+ V+F A VKA +A
Sbjct: 169 -----GPLYA-LALGLLLVGLGFKAALAPFHFWTPDVYQGSPTPV-VLFMATSVKAAAFA 221
Query: 256 MARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALA 315
LL+ A + V ++ L+V+ L+AL Q++ KR++AYSSI G +ALA
Sbjct: 222 A-----LLRVA----APPEAVALLVALSVVVGNLAALAQKEAKRLLAYSSIAHAGYMALA 272
Query: 316 FSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALT 375
G + F++L + + + F + I+ LE GL ++ PL LA
Sbjct: 273 LYTGNAQALG---FYLLTYVLATGLAFAVLSQ--ISPDRVPLEALRGLYRKDPLLGLAFL 327
Query: 376 IGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRL 426
+ +S +G+P FW K+ +AG +L L S V A YY L
Sbjct: 328 VAMLSLLGLPPLAGFWGKYLAFAEAARAGAWGVLVLALVTSAVSAYYYLGL 378
>gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880797|gb|AAD54890.1|AF137379_113
(AF137379) subunit 5 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 648
Score = 153 bits (383), Expect = 4e-36
Identities = 125/427 (29%), Positives = 209/427 (48%), Gaps = 42/427 (9%)
Query: 72 INLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATG 128
I ++ P + ++++ V+ + ++S + + V+ + Y F+ L + T G++ +
Sbjct: 85 IGYWVDPLTSTMLVVVTSVALLVMIYSDEYMHVD--EGYVRFFVYLSIFTTSMLGLVLSP 142
Query: 129 DIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGT 187
++ ++ F E+ + +Y L + T AAEAS K + +G L+G+ LY TG+
Sbjct: 143 NLVQVYGFWELVGMCSYLLVGFWFTRPTAAEASQKAFITNRVGDFGLLLGILALYWMTGS 202
Query: 188 LNMAHLAE----LSTSINPI--VAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
A +A+ L +I + +A + LV G ++ FPL+ W PDA + P PI+
Sbjct: 203 FEFASIADRLGDLLIAIPSLRTIACIACILVFMGPIAKSAQFPLHVWLPDAMEG-PTPIS 261
Query: 242 VMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
+ +A +V AG++ +AR+ + + V+ L+ TLT AL Q D+K+
Sbjct: 262 ALIHAATMVAAGVFLVARMFPVFDQL---PLVMELIAWTGTLTAFLGATMALTQSDIKKG 318
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--------YVGIT- 351
+AYS++ Q+G + +A LGT A +A +FH+ HA KA++FL G VG +
Sbjct: 319 LAYSTMSQLGYMIMA--LGTGAYSEA-LFHLTTHAYSKALLFLAAGSVIHGMEPVVGFSP 375
Query: 352 LGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAIL 411
+ + + GL K MPLTA+ +G S G+P FWSK I+ I
Sbjct: 376 MQNQNMHRMGGLRKYMPLTAMTFLLGTCSICGIPPLACFWSKDAILAEVFATHPTCWLIA 435
Query: 412 VLFASMVEAVYYFRLVHTMWFSGS------GERVKEGWI--VIFLLLLAVLVVAIGIYPT 463
L A M Y FR ++ + F GS + KE + V L++LA+ VAIG T
Sbjct: 436 WLTAGMT-GFYMFR-IYFLTFEGSFRSDLGRAKPKESHLGMVAPLIILAIPTVAIGSLGT 493
Query: 464 ---PAWE 467
P WE
Sbjct: 494 PFAPVWE 500
>pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechococcus sp. (strain PCC 7002)
>gi|2232047|gb|AAB62185.1| (U97516) NADH dehydrogenase
subunit 4 [Synechococcus PCC7002]
Length = 498
Score = 153 bits (383), Expect = 4e-36
Identities = 126/506 (24%), Positives = 237/506 (45%), Gaps = 42/506 (8%)
Query: 6 SLLIALPLISAFFVPVLKRIKQSLIMPYLILITL-IQTGI--------AGWVFYEVYTTG 56
S L+ LPL+ + + R ++ ++TL I +G+ AG + E +
Sbjct: 3 SFLLFLPLVGIGAIALFPRPLTRIVATVFTVVTLAISSGLLINLNLQDAGMQYTEFHN-- 60
Query: 57 KPIIIMAGGWRPPVGINLYIGPFA-ALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFL 115
W +G+N +G +L ++++ + + A++S+ P Y L L
Sbjct: 61 ---------WLSILGLNYNLGVDGLSLPLIVLNSLLTLVAIYSIGESNHRP-KLYYSLIL 110
Query: 116 LLMLGATGMIATGDIFNLFVFMEITAITAYALTAY---NKTGEAAEASMKYIVLGGIGSS 172
L+ G TG + ++ F+F EI I Y L A K G A+ + Y + G+
Sbjct: 111 LINSGITGALIANNLLLFFLFYEIELIPFYLLIAIWGGEKKGYASTKFLIYTAISGLCVL 170
Query: 173 FFLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
+G+ L + + +L + N V + L +++ G ++ L PL+ W PDA
Sbjct: 171 AAFLGIVWL-SQSSNFDFENLTLENLEFNTKV--ILLTILLIGFGIKIPLVPLHTWLPDA 227
Query: 233 YQAAPHPITVMFSAFVVKAGLYAMARI-LYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
Y A +TV+ K G Y + R L L WS+V + ++ T++V++ L+A
Sbjct: 228 YVEANPAVTVLLGGVFAKLGTYGLVRFGLQLFPDV--WSTVSPALAVIGTVSVMYGSLAA 285
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
+ QRD+KRM+AYSSIG +G I ++ + GT+ + V M++H+++ A++F VG +
Sbjct: 286 IAQRDLKRMVAYSSIGHMGYILVSTAAGTELSLLGAVAQMISHSLILALLFHLVGIIERK 345
Query: 352 LGGTELEKFEGL---GKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWP 408
+G +L+ GL + +PLT+ L + +++ G+P F ++F + + + F P
Sbjct: 346 VGTRDLDVLNGLMNPVRGLPLTSSLLILAGMASAGIPGLVGFVAEFLVFQGSF-SRFPIP 404
Query: 409 AILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIVIF------LLLLAVLVVAIGIYP 462
+ + AS + AVY+ L++ F G + + +F + L V+++ +G+ P
Sbjct: 405 TLFCIIASGLTAVYFVILLNRTCF-GRLDSHTAYYPKVFASEKIPAIALTVIILFLGLQP 463
Query: 463 TPAWEIVKRAGSDIFAVANYVKNVPL 488
++ S A V+ + L
Sbjct: 464 AWLTRWIEPTTSQFIAAIPTVQTIAL 489
>emb|CAC08259.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 664
Score = 153 bits (383), Expect = 4e-36
Identities = 107/340 (31%), Positives = 184/340 (53%), Gaps = 19/340 (5%)
Query: 69 PVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGM---I 125
PV + L+I FAAL +++ V+ ++S ++ +P +YA L+ L + M +
Sbjct: 73 PVELALHIDGFAALVAVLVGTVATCVQIYSTGYLRDDP--RYASYAALVSLFTSAMFLVV 130
Query: 126 ATGDIFNLFVFMEITAITAYALTA-YNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGA 184
+GD+ L V E+ I +Y L Y +T EA AS+K ++ +G FLIG+ L
Sbjct: 131 YSGDLMVLLVGWEVMGICSYFLVGHYWETPEARAASLKAFLVTKLGDVPFLIGLLALVTE 190
Query: 185 TGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF 244
G+ + + S + + L++ G+A ++ FPL+ W PDA A P P++ +
Sbjct: 191 AGSFRITKILGAVASGSLDHPTLIALLLLAGVAGKSAQFPLHTWLPDA-MAGPTPVSALI 249
Query: 245 -SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAY 303
+A +V AG+Y +AR+L L + + VL +MA +T++ + L+AL Q D+KR++AY
Sbjct: 250 HAATMVAAGVYFVARLLPLFEASRAAMVVLA---VMAAVTMVGSALAALAQDDIKRVLAY 306
Query: 304 SSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE----LEK 359
S+IGQ+G + A + G + A VFH+L+H KA++FL G + I GT + +
Sbjct: 307 STIGQLGYMTGALATGDRG---AAVFHLLSHGAFKALLFLAAGVI-IHAAGTNSLAAMSR 362
Query: 360 FEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
GL R+P +T+ ++ +P F+ F+SK ++ A
Sbjct: 363 MRGLRDRVPDAYWTMTVALLALAAIPPFSGFFSKESVLGA 402
>emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related protein
[Thermoplasma acidophilum]
Length = 469
Score = 153 bits (382), Expect = 5e-36
Identities = 100/393 (25%), Positives = 190/393 (47%), Gaps = 27/393 (6%)
Query: 88 AVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNL---FVFMEITAITA 144
A+V I+A+F V + + + L+ A GMI + +NL FV E +I
Sbjct: 69 AIVLLISALFISLPVAKYLGKRSEIFYSALIFSALGMIFVAETWNLIIAFVAFESVSIMT 128
Query: 145 YALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIV 204
Y ++AY EA++KY G I ++F ++G+A + + GT ++ + ++ P +
Sbjct: 129 YIMSAYGGKQRNLEATVKYFFTGTIATTFIILGIAFYFFSVGTFTLSTSTTMVSADKPTM 188
Query: 205 AQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQ 264
+ L ++ G + +FP++ WA DAY + ++ S G MA ++ L
Sbjct: 189 L-LALLFLLIGFGFKLAIFPMHQWAIDAYDGTENDVSAFLST-----GTKIMAFVIVLKI 242
Query: 265 KANGWSS----VLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGT 320
G+SS V +I++ LT+ +A ++AL Q +VKR++AYSS+ Q G + L ++ +
Sbjct: 243 FLVGFSSYTAPVYFFFVILSVLTMTYANVAALSQNNVKRLLAYSSVAQAGYLILVLAVVS 302
Query: 321 QAGVD-----------AGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPL 369
G+ +G+F+ L + +K FL + V + GLGK+ P
Sbjct: 303 YVGIGNKPSVVDLAIASGMFYSLVYIFMKGGSFLAMNMV--KQENVTFDAISGLGKKSPY 360
Query: 370 TALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLV-H 428
A + +I +S G+PL F +K+ + ++ + G W A++ + S + YY +++ +
Sbjct: 361 VAASFSILLLSLAGIPLTGGFLAKYFLFLSVIDGGLWWLAVIAILNSAISVFYYMKVMRY 420
Query: 429 TMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIY 461
W E + +++ A +VV +G++
Sbjct: 421 LFWEDPKSEFSTDNGNKAMVIISAAIVVFLGVF 453
>gb|AAF08189.1| (AF130233) NADH dehydrogenase subunit F [Aquilegia bicolor]
Length = 729
Score = 152 bits (381), Expect = 7e-36
Identities = 116/437 (26%), Positives = 209/437 (47%), Gaps = 39/437 (8%)
Query: 23 KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIG----P 78
K+I++ P ++L++++ ++ G PI W +L G P
Sbjct: 25 KKIRRIWAFPSVLLLSIVMLFSVDLSIQQI--NGSPIYQYVRSWTINNDFSLDFGYLIDP 82
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLM----LGATGMIATGDIFNLF 134
++ +++I V + ++S + D+ + F M G++ ++ ++
Sbjct: 83 LTSIMLILITTVGTMVLIYSDNYMSH---DRGYLRFFAYMGFFNASMLGLVTCSNLIQIY 139
Query: 135 VFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHL 193
+F E+ + +Y L + T AA A K V +G +G+ LY TG+ L
Sbjct: 140 IFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDFGLFLGILGLYWVTGSFEFRDL 199
Query: 194 AELSTSI------NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SA 246
E+ ++ N + + +L+ G ++ FPL+ W PDA + P PI+ + +A
Sbjct: 200 FEIVNNLIDNNGANSLFLTLCASLLFVGAIAKSAQFPLHVWLPDAMEG-PTPISALIHAA 258
Query: 247 FVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSI 306
+V AG + +AR+L L S++ ++ ++ +T++ AL QRD+KR +AYS++
Sbjct: 259 TMVAAGFFLVARLLPLFTAI---PSIMNIISLVGIITILLGATLALAQRDIKRSLAYSTM 315
Query: 307 GQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEKFE-- 361
Q+G I LA +G+ A +FH++ HA KA++FLG G + TL G +K +
Sbjct: 316 SQLGYIMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHSMETLVGYSPDKSQNM 372
Query: 362 ----GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASM 417
GL K +P+T A +G +S G+P FWSK II + I+ AI+ F +
Sbjct: 373 ALMGGLTKYVPITKTAFLLGTLSLCGIPPLACFWSKDEIINDSWVYSPIF-AIIACFTAG 431
Query: 418 VEAVYYFRLVHTMWFSG 434
+ A Y FR ++ + F G
Sbjct: 432 LTAFYMFR-IYLLTFEG 447
>pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1a -
Synechocystis sp. (strain PCC 6803)
>gi|1652513|dbj|BAA17434.1| (D90906) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 502
Score = 152 bits (379), Expect = 1e-35
Identities = 120/443 (27%), Positives = 216/443 (48%), Gaps = 29/443 (6%)
Query: 6 SLLIALPLISAFFVPVL------KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPI 59
SLL+ LP+I A + K+++Q I ++TL+ + + V ++ T
Sbjct: 3 SLLLILPVIGALIIGFFPGNIPAKQLRQ--ITEVFAVLTLVWSLL---VLFKFDVTDPQF 57
Query: 60 IIMAG-GWRPPVGINLYIGPFAALFVLIIAVVSFIT--AVFSVKAVKVEPIDKYAMLFLL 116
W P +G+N Y L + ++ + + +T A++S+ V Y L LL
Sbjct: 58 QFQEYLPWIPQLGLN-YSLAIDGLSLPLVILNNLLTGVAIYSI-GPNVNRSRLYYGLILL 115
Query: 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFL- 175
+ G +G + ++ VF E+ I Y + A + ASMK+++ L
Sbjct: 116 INAGISGALLAQNLLLFIVFYELELIPFYLMIAIWGGEKRGYASMKFLLYTAFSGLLVLA 175
Query: 176 --IGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAY 233
+G++LL +G+ + + E++ + + L L++ G ++ L PL+ W PDAY
Sbjct: 176 AFLGMSLL---SGSHSFDYNPEITQTFTESAQTILLILILLGFGIKIPLVPLHTWLPDAY 232
Query: 234 QAAPHPITVMFSAFVVKAGLYAMARI-LYLLQKANGWSSVLRLVLIMATLTVIFAELSAL 292
A ++ + K G Y + R L L + W+ ++ I+ T+TV++ LSA+
Sbjct: 233 TEASPATAILLGGILAKLGTYGIIRFGLQLFPQT--WAQFAPVLAIIGTVTVLYGALSAI 290
Query: 293 RQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL 352
Q+D+KRM+AYSSIG +G I +A + GT+ V V M++H ++ A++F VG V
Sbjct: 291 AQKDIKRMVAYSSIGHMGYILVAAAAGTELSVLGAVAQMVSHGLILALLFHLVGIVERKA 350
Query: 353 GGTELEKFEGLG---KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPA 409
G +L+ GL + +PLT+ L G +++ G+P F ++F + + F P
Sbjct: 351 GTRDLDVLNGLMNPIRGLPLTSALLITGGMASAGIPGLVGFAAEFIVFQGSFPT-FPIPT 409
Query: 410 ILVLFASMVEAVYYFRLVHTMWF 432
+L + AS + AVY+ L++ F
Sbjct: 410 LLCILASGLTAVYFVILLNRTCF 432
>pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN1 -
Aquifex aeolicus >gi|2983744|gb|AAC07305.1| (AE000734)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 464
Score = 151 bits (378), Expect = 2e-35
Identities = 120/474 (25%), Positives = 223/474 (46%), Gaps = 31/474 (6%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
++A+ +++ F + + K + L I ++ +G Y ++ P + G+
Sbjct: 11 ILAIGILTVFILELFLERKHYKFLSVLAFIFVVLSG------YSIFFVNYPAKLFFDGFS 64
Query: 68 PPVGINLYIGPFAALFVLIIAVVSFIT-AVFSVKAVKVEPIDKYAMLFLLLMLGATGMIA 126
+NL LF+L AV F+ + + + K + L+L+ LG MI+
Sbjct: 65 VDA-LNL----IGKLFIL--AVTGFVLLSSYDYFSKKNSQYGELPYLYLIATLGLMVMIS 117
Query: 127 TGDIFNLFVFMEITAITAYALTA-YNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGAT 185
+ ++ +F +E+ +IT Y L + + + E + KY+V+G G+S + +G AL+Y ++
Sbjct: 118 SDNLAIIFTGLELASITMYILVGLFRREYLSKEGAFKYLVIGTTGTSMYALGSALVYASS 177
Query: 186 GTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFS 245
G++ ++ + E +T + +G+ L+I LA++ P + W PDAY+ AP P T S
Sbjct: 178 GSMVLSPVKEENT-----LFALGVILIISALALKVSAVPFHFWTPDAYEGAPTPTTAYLS 232
Query: 246 AFVVKAGLYAM--ARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAY 303
V K G+Y + +YL W V V+++A L++ + + A Q+ VKR++AY
Sbjct: 233 T-VPKIGMYFLFVKLTMYLFSAFPDWKYV---VMLLAVLSMFYGNIVAYAQKSVKRLLAY 288
Query: 304 SSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGT-ELEKFEG 362
SSI G A + + A +F++ +A+ F + + G T F+G
Sbjct: 289 SSIAHAGYFLTALTAVDKHLFSALLFYVFVYALATVGAFTVLAILEKKEGWTHHFLDFKG 348
Query: 363 LGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVY 422
L + P+ A L + + +G+P VF K I ++ IL AS++ A Y
Sbjct: 349 LKEENPVLASMLALFLFALIGIPPAAVFLGKLGIFFGLVKTDMFALGILFAIASLISAGY 408
Query: 423 YFR-LVHTMWFSGS---GERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRA 472
Y + +V+ +SG G+ +L A LV+ G++P + + RA
Sbjct: 409 YLKVIVYMFLYSGEVRHGQTTVSAGEAFTVLGTAFLVIFFGLFPHVVLDFILRA 462
>gb|AAD52915.1|AF152244_2 (AF152244) NADH dehydrogenase subunit 2 [Acropora tenuis]
Length = 365
Score = 151 bits (378), Expect = 2e-35
Identities = 94/362 (25%), Positives = 184/362 (49%), Gaps = 37/362 (10%)
Query: 116 LLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNK-TGEAAEASMKYIVLGGIGSSFF 174
++ LG ++++ + ++++ +E++ ++ + L A +G++AEA +KY VLG + S F
Sbjct: 1 MVALGGLCLVSSSNWLSVYLAIELSTLSLFILVAQKGGSGQSAEAGLKYFVLGALSSGLF 60
Query: 175 LIGVALLYGATGTLNMAHLAELSTSINP------IVAQVGLALVIFGLAVEAELFPLNAW 228
L G ALL G TG H++ ++ +NP + +G L++ L + P + W
Sbjct: 61 LFGCALLCGFTGG---THISYINLVLNPGLGFSELRIPIGSLLIVVSLLFKLSAAPFHMW 117
Query: 229 APDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAE 288
APD Y AP T + A V K G +++ + S + ++L+ A +++
Sbjct: 118 APDVYDGAPTTTTALL-ATVPKVGYFSILVSI---------GSAVNILLVGALFSMVVGA 167
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV 348
+ AL Q VKR++AYS +G +G + +G+ + A + +++ + ++ +F +
Sbjct: 168 IGALNQTKVKRLLAYSGVGHMGFVLWGIEVGSFESIQASLIYVVLYVVMSICVFAII--- 224
Query: 349 GITLGGTE--LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFI 406
+TLG + + +F GL +R+ + AL L + +S G+P FW K+ ++++ + +
Sbjct: 225 -LTLGAAKNLIVEFSGLSRRLSVLALTLALTFLSIAGIPPLVGFWGKWLVLLSGVVYQYY 283
Query: 407 WPAILVLFASMVEAVYYFRLVHTMWFSGSGERV-------KEGWIVIFLLLLAVLVVAIG 459
+L + S+V VYY R+V ++F S + KE WI L L++ G
Sbjct: 284 LVFLLAVMCSVVAGVYYVRIVKIIYFQASFSLLISSKVLRKENWI----NLRKALLIGAG 339
Query: 460 IY 461
+Y
Sbjct: 340 LY 341
>pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657546|gb|AAF96070.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 891
Score = 151 bits (378), Expect = 2e-35
Identities = 115/419 (27%), Positives = 209/419 (49%), Gaps = 22/419 (5%)
Query: 30 IMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLY--IGPFAALFVLII 87
++P+ +L L+ GWVFY T G + W P + +NL + + LF +I
Sbjct: 20 LLPFAVLPILL----FGWVFYWHQTGGNAWQVT---WVPGLDLNLSFRLDGLSFLFASLI 72
Query: 88 AVVSFITAVFSVKAVKVEPIDKYAMLFL-LLMLGATGMIATGDIFNLFVFMEITAITAYA 146
+ + ++++ +K + L+L L ML G++ + +I LF+F E+T IT+Y
Sbjct: 73 TGIGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNILLLFIFWELTTITSYL 132
Query: 147 LTAYNKTGEAAEAS-MKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSI--NPI 203
L +N + + ++ +++ G G L G+ LL + ++ + E + I +P
Sbjct: 133 LIGFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSYQISVIIEHADHIAQHPW 192
Query: 204 VAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV-MFSAFVVKAGLYAMARILYL 262
L LV+ G ++ FP + W P+A AAP P++ + SA +VKAG+Y +AR+ +
Sbjct: 193 FMP-SLILVLLGAFTKSAQFPFHFWLPNA-MAAPTPVSAYLHSATMVKAGIYLLARLSPI 250
Query: 263 LQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQA 322
++ W L +V +T ++ L A +Q D+K M+AYS+ +G + L LGT+
Sbjct: 251 YASSDFWFYCLTIV---GAVTALWCALLAFKQTDLKLMLAYSTNVALGKLTLLLGLGTEV 307
Query: 323 GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTV 382
+ A V + H+ KA +F+ VG + G E EK L + L+ +A I A+S
Sbjct: 308 ALTAAVLFIFAHSFYKAALFMVVGNIDKATGTREREKLGNLKSVLLLSLIAAVIAALSKS 367
Query: 383 GVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKE 441
GV F SK + +++++G W ++++L + + L++ +F G+ KE
Sbjct: 368 GVAPMLGFLSKEYMYKSSVESGIAWISLVLLLINALMVALAIALLYKPFF---GQATKE 423
>pir||S38323 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N -
Escherichia coli (strain AN387)
Length = 476
Score = 151 bits (377), Expect = 2e-35
Identities = 126/483 (26%), Positives = 220/483 (45%), Gaps = 45/483 (9%)
Query: 20 PVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKP-----IIIMAGGWRPPVGINL 74
P+++ +++ L+L+ + T + + E Y K ++I A G P GI++
Sbjct: 5 PLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGIPRFGISI 64
Query: 75 Y--IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIF- 131
+ I + L V++ ++ + + S K I+KY F L ++ ++A I+
Sbjct: 65 HLAIDGLSLLMVVLTGLLGVLAVLCSWKE-----IEKYQGFFHLNLMWI--LLANATIWR 117
Query: 132 NLFVFMEITAITAYALTAYN-KTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNM 190
+LF+ +E+ ++ + L Y + + EAS+KY +L SSF L G+AL+Y +G L+
Sbjct: 118 SLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSF 177
Query: 191 AHLAEL--STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFV 248
L + +N + G L+I GL + L P + W PD YQ AP P++ F A
Sbjct: 178 VALGKNLGDGMLNDALLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST-FLATA 236
Query: 249 VKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQ 308
K ++ + L+L V R ++IF L AL Q ++KR++ YSSI
Sbjct: 237 SKIAIFGVVMRLFLYAPVGDSEQVRRGAGDYRFASIIFGNLMALSQTNIKRLLGYSSISH 296
Query: 309 IG--LIAL-AFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL---------GGTE 356
+G L+AL A G + GV+ + +F +G G+
Sbjct: 297 LGYLLVALIALQTGEMSMEAVGVY-------LAGYLFSSLGAFGVVSLMSSPYRGPDADS 349
Query: 357 LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFAS 416
L + GL P+ A +T+ +S G+P+ F KF ++ +QA W V+ S
Sbjct: 350 LFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGS 409
Query: 417 MVEAVYYFRLVHTMWFSG---SGERVKEGWIV----IFLLLLAVLVVAIGIYPTPAWEIV 469
+ YY R+ +++ G W I +L+ A+LV+ +G++P P IV
Sbjct: 410 AIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIV 469
Query: 470 KRA 472
+ A
Sbjct: 470 RLA 472
>pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - wheat
mitochondrion >gi|2326762|emb|CAA74779.1| (Y14435) NADH
dehydrogenase subunit 2 [Triticum aestivum]
Length = 488
Score = 150 bits (376), Expect = 3e-35
Identities = 97/387 (25%), Positives = 187/387 (48%), Gaps = 30/387 (7%)
Query: 109 KYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLG 167
++ +L LL MI+ D+ +++ +E+ ++ Y + A + E + EA +KY++LG
Sbjct: 113 EFIVLILLSTCSMLLMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILG 172
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVAQ-----VGLALVIFGLAVEAEL 222
S L G +++YG+TG + LA++ T A+ +G+ + G +
Sbjct: 173 AFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFKITA 232
Query: 223 FPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATL 282
P + WAPD Y+ +P P+T F + K ++A ++++ G ++ ++ +
Sbjct: 233 VPFHMWAPDIYEGSPTPVTA-FLSIAPKISIFANMLRVFIVASYGG--TLQQIFFFCSIA 289
Query: 283 TVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMF 342
++I L+A+ Q VKR++AYSSIG +G I + FS GT G+ + +L + A+M
Sbjct: 290 SMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEGIQS----LLIGIFIYALMT 345
Query: 343 LGVGYVGITLGGTELEKFEGLG---KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
+ + + L T ++ LG K P+ A+ +I S G+P F SKF + A
Sbjct: 346 IDAFAIVLALRQTRVKYIADLGALAKTNPILAMTFSITMFSYAGIPPLAGFCSKFYLFFA 405
Query: 400 TLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIV---------IFLLL 450
L G + A++ + S++ YY RLV M+F WI+ + L +
Sbjct: 406 ALGCGAYFLALVGVVTSVIGCFYYIRLVKRMFFDR-----PRTWILYEPMDRDKSLLLAM 460
Query: 451 LAVLVVAIGIYPTPAWEIVKRAGSDIF 477
+ ++ +YP+ +++ + ++
Sbjct: 461 TSSFIILFFLYPSSLFDLTHQMALSLY 487
>gb|AAF78990.1| (L75865) NADH dehydrogenase F [Guzmania monostachya]
Length = 691
Score = 150 bits (375), Expect = 3e-35
Identities = 105/379 (27%), Positives = 192/379 (49%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 195
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
HL E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 HLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ L+ ++ +T++ AL QRD+K+ +AYS
Sbjct: 255 AATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGVITLLLGATLALAQRDIKKSLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 312 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 368
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 369 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 427
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 428 AGLTAFYMFR-VYLLTFDG 445
>sp|P93401|NU2M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2
Length = 488
Score = 150 bits (375), Expect = 3e-35
Identities = 98/387 (25%), Positives = 182/387 (46%), Gaps = 30/387 (7%)
Query: 109 KYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLG 167
++ +L LL MI+ D+ +++ +E+ ++ Y L A + E + EA +KY++LG
Sbjct: 113 EFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVLAASKRKSEFSTEAGLKYLILG 172
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVAQ-----VGLALVIFGLAVEAEL 222
S L G +++YG+TG + LA++ T A+ +G+ + G +
Sbjct: 173 AFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFKITA 232
Query: 223 FPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATL 282
P + WAPD Y+ +P P+T S + + A IL + + +++ ++ +
Sbjct: 233 VPFHMWAPDIYEGSPTPVTAFLS---IAPKISIFANILRVFIYGSYGATLQQIFFFCSIA 289
Query: 283 TVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMF 342
++I L+A+ Q VKR++AYSSIG +G I + FS GT G+ + + + +A+ F
Sbjct: 290 SMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEGIQSLLIGLFIYALTTINAF 349
Query: 343 LGVGYVGITLGGTELEKFEGLG---KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
+ + L T ++ LG K P+ A+ +I S G+P F SKF + A
Sbjct: 350 A----IVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFA 405
Query: 400 TLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIV---------IFLLL 450
L G + A + + S++ YY RLV M+F WI+ + L +
Sbjct: 406 ALGCGAYFLASVGVVTSVIGCFYYIRLVKRMFFD-----TPRTWILYEPMDRNKSLLLAM 460
Query: 451 LAVLVVAIGIYPTPAWEIVKRAGSDIF 477
+ + +YP+P + + + ++
Sbjct: 461 TSSFITLFFLYPSPLFSVTHQMALSLY 487
>pir||H75060 hydrogenase (EC 1.-.-.-) 4 component D PAB1391 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5458894|emb|CAB50381.1| (AJ248287) HYDROGENASE-4
COMPONENT D (EC 1.-.-.-). [Pyrococcus abyssi]
Length = 486
Score = 150 bits (374), Expect = 5e-35
Identities = 114/421 (27%), Positives = 211/421 (50%), Gaps = 33/421 (7%)
Query: 74 LYIGPFAALFVLIIAVVSFITAVFSVKAVK----VEPIDKYAMLF---LLLMLGAT-GMI 125
+ + P + L ++A+ F+ ++S+ + P+ K F +L+ LG+T G I
Sbjct: 75 IIVDPMSVLIGFVVALAGFLFLLYSIDYMSPRNSTHPVHKDKGRFYAWMLIFLGSTLGFI 134
Query: 126 ATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGAT 185
+ + L VF E+ ++ + + +Y T A A+ K ++ G+ V LY A
Sbjct: 135 YSSTLLQLLVFFELMSLACWGVVSYYGTESAVRAAYKAFIIPNFGA------VVGLYTAL 188
Query: 186 GTLNMAHLAELST-SINPIVAQVGLAL---VIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
++++ L +LS S+ + A + L L V+ ++ FP +W PDA +A
Sbjct: 189 -SISITKLHDLSLYSLQGLDAHLKLVLFLGVMIAAFTKSAQFPFYSWLPDAMEAPTPASA 247
Query: 242 VMFSAFVVKAGLYAMARILYLLQKA--NGWSSVLRLVLIMATLTVIFAELSALRQRDVKR 299
+ A +++ G+Y +ARI+ + + +L L+ I L +I+ L QRD KR
Sbjct: 248 FLHGAAMIEMGVYLLARIIQFMSPIPQEAFYVMLTLLAITQVLAIIYYPL----QRDAKR 303
Query: 300 MIAYSSIGQIGL--IALAFSL-GTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE 356
++AYS+I + G+ + L ++L G G+ A +F + NHA VK + FL G + G +
Sbjct: 304 LLAYSTISEAGIMYVGLLYALLGNAEGIQASMFQLFNHAFVKGLAFLSAGTFAYSFGTLD 363
Query: 357 LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQA--GFI-W-PAILV 412
+EK G+ MP+ A+ + + G P F +F+SK I++++ A GFI W P +LV
Sbjct: 364 MEKIRGIRWSMPVVAVGWFLALLGLAGAPPFGIFFSKAYIVMSSKLASQGFIAWIPVLLV 423
Query: 413 LFASMVEAVYYFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRA 472
L + V + + TM F E+ +E ++ +LLA++++++ + P ++ V
Sbjct: 424 LIDATVFFIVSVLWLKTMLFGEPTEKREEITPLMKAVLLALIILSV-VAPLISYRFVTGI 482
Query: 473 G 473
G
Sbjct: 483 G 483
>emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti]
Length = 547
Score = 150 bits (374), Expect = 5e-35
Identities = 135/530 (25%), Positives = 236/530 (44%), Gaps = 60/530 (11%)
Query: 7 LLIALPL-ISAFFVPVLKRIKQ--------SLIMPYLILITLIQTGIAGWVFYEVYTTGK 57
L I LPL ++A +P+ +R + S ++ +++ + L++ AG TG
Sbjct: 19 LPILLPLAVAAVLIPINERDRTLKGAIGFASTLVVFILSMILMRLAAAG--------TGS 70
Query: 58 ---PIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLF 114
+ G W P GI L + +AL + + + ++ +S+ + LF
Sbjct: 71 LPGSGVYQLGNWPAPFGIVLVLDRLSALMLCLTSGLALAAQAYSMARWHTAG-HHFHSLF 129
Query: 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFF 174
LL+ G G TGD+FNLFVF E+ +Y L + +A + YI + S+ F
Sbjct: 130 QLLVAGLNGAFLTGDLFNLFVFFEMMLAASYGLLLHGSGPLRVKAGLHYIAVNLAASALF 189
Query: 175 LIGVALLYGATGTLNMAHLAELSTSINP---IVAQVGLALVIFGLAVEAELFPLNAWAPD 231
LIGV+L+YGA GTLNMA LA ++ P + ++G A++ V+A ++PL+ W P
Sbjct: 190 LIGVSLIYGAAGTLNMADLATKLAALEPRSRTLVEMGSAILGVAFLVKAGMWPLSFWLPT 249
Query: 232 AYQAAPHPITVMFSAFVVKAGLYAMARI-LYLLQKANGWSSVL--RLVLIMATLTVIFAE 288
AY AA P+ +F A + K G+Y + R+ L + A G SS ++ LT+ F
Sbjct: 250 AYAAATPPVAGVF-AVLTKVGIYVIIRLHLLVFGTAAGASSGFGQEWLVTGGMLTIAFGG 308
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFL----- 343
+ L + + R+ YS + G + A LG + +F++++ + FL
Sbjct: 309 IGVLASQAMGRLAGYSVLVSSGTLLAAVGLGHDGMLAGALFYLVSSTLTIGAFFLLIELV 368
Query: 344 ------GVGYVGITLGG----TELEKFEGLGKRMPLT----ALALTIGAVSTVGVPLFNV 389
G + +T+ E E+ E +G +P T L + A+ G+P +
Sbjct: 369 ERGRDAGADVLAVTMEAYGDFDEDEEEEEVGAAIPGTMAVLGLCFCLCALLLAGLPPLSG 428
Query: 390 FWSKFRII----------VATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERV 439
F +KF +I +AT + W + +L S + A+ + F S E
Sbjct: 429 FIAKFALISGLFDMPAAELATAMSAADWTYVTLLILSGLAAMIAMNRIGIRTFWASIEGT 488
Query: 440 KEGWIVIFLLLLAVLV---VAIGIYPTPAWEIVKRAGSDIFAVANYVKNV 486
+VI + + VL+ + + + PA ++ D+ A + + V
Sbjct: 489 IPRVVVIEITPVVVLLGACIFLSLQAGPAMRYMQATADDLLAPLTHSERV 538
>pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM1 -
Aquifex aeolicus >gi|2983743|gb|AAC07304.1| (AE000734)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 491
Score = 149 bits (373), Expect = 6e-35
Identities = 121/495 (24%), Positives = 225/495 (45%), Gaps = 24/495 (4%)
Query: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPII 60
M + ++ I LPL+ A V V++ + + LI + + +V ++ G
Sbjct: 1 METLLNVAIFLPLVGALLVAVIRNEIFAKVASILIGAVVALISLVLFVNFDFSKKGFQFE 60
Query: 61 IMAGGWRPPVGINLYIGPFA-ALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLML 119
W +GI ++G A+ ++++ + F+ A ++ P Y LFL L
Sbjct: 61 TYVP-WIKTLGIGYHVGVDGMAISLILMTSILFLAAYIWSWKIEDRP-SLYFALFLALET 118
Query: 120 GATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVA 179
G+ A D+F ++F E I Y + + A+ K+ + GS F L+G+A
Sbjct: 119 ACIGVFAALDLFLFYLFWEGMLIPMYFIIGFWGHDRKVYAANKFFLYTFFGSLFLLLGIA 178
Query: 180 --LLYG--ATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQA 235
L+YG TG ++ + L + + L G AV+ ++P + W PDA+
Sbjct: 179 SILVYGYFETGKISFDYFFHLGLDYPLWLELIAFLLFGIGFAVKIPMWPFHTWLPDAHVE 238
Query: 236 APHPITVMFSAFVVKAGLYAMARI-LYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQ 294
AP +V+ + ++K G Y R L +A+ + + L+ ++ + VI+A + A+ Q
Sbjct: 239 APTAGSVILAGVLLKMGTYGFVRFSLPFFPEASKY--YIPLIFTLSVVAVIYAAMMAIAQ 296
Query: 295 RDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGG 354
+KR+IAYSSI +GL+ L ++ ++ M+ H + A +FLG G++ +
Sbjct: 297 THMKRLIAYSSISHMGLVTLGTFAMNSDALNGAIYLMIAHGLSSAALFLGAGFIYDRIHS 356
Query: 355 TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAI--LV 412
++ GL + +P A + ++ + P F F S+F I++ + +W + +
Sbjct: 357 YHMDDLGGLARYIPYFTFAFFLAVLAGIAFPGFASFVSEFLILLGIFEKFPVWAFVAGIG 416
Query: 413 LFASMVEAVYYFRLVHTMWFSGSGERVKEGW----------IVIFLLLLAVLVVAIGIYP 462
+ ++Y FR V S ERV E W + F L++ + +V +GIYP
Sbjct: 417 MVLGAAYSLYMFRKVMLEEESIPEERV-EKWKKLKDLELHHAIPFALIIGMALV-MGIYP 474
Query: 463 TPAWEIVKRAGSDIF 477
P +IV+ +F
Sbjct: 475 YPFVKIVEHTSKLVF 489
>gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea]
>gi|7432119|pir||T11228 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - red alga (Porphyra purpurea)
mitochondrion >gi|4106940|gb|AAD03107.1| (AF114794) NADH
dehydrogenase subunit 2 [Porphyra purpurea]
Length = 495
Score = 149 bits (372), Expect = 8e-35
Identities = 107/397 (26%), Positives = 186/397 (45%), Gaps = 23/397 (5%)
Query: 85 LIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITA 144
L++ + +I VFS + +Y ++ +L ++ + ++ D L++ +E +I
Sbjct: 90 LLVTALFWILIVFSYNKAEKVNFYEYWIIAMLAIVAMLLISSSFDFLVLYLAIEFQSIAF 149
Query: 145 YALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPI 203
Y L ++ +T E + EA +KY VLG S+ L+G++LLYG TG N L++ I+
Sbjct: 150 YILASFKRTSEFSTEAGLKYFVLGAFSSALLLLGISLLYGTTGLTNFGDLSKFFLGISAT 209
Query: 204 VAQV------GLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMA 257
A + + L+ L + P + W+PD Y+ AP +T F A + M
Sbjct: 210 KASIVNTTILSIVLIEVSLLFKVSAAPFHMWSPDVYEGAPTNVTSFFGILPKLALVGIMF 269
Query: 258 RILYLLQKANGWSSVLRLVLIMATLT-VIFAELSALRQRDVKRMIAYSSIGQIGLIALAF 316
RI +L + +L L++ L+ ++ AL Q KR IAYS+I +G I F
Sbjct: 270 RIFFLC--CEEIAQMLNFTLVVCALSSMVVGTFGALEQVKWKRFIAYSTISHVGFIIAGF 327
Query: 317 SLGTQAGVDAGVFHMLNHAIVKAMMF---LGVGYVGITLG--GTELEKFEGLGKRMPLTA 371
S AG +F++L + + +F L + + L+ GL K P+ +
Sbjct: 328 STTEFAGAFGAIFYILIYTLTSLAIFSIVLSLRSISYPTAYQSRYLKDIAGLVKLNPMLS 387
Query: 372 LALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMW 431
+ L S G+P F F++K +++A LQ AI+ + S + YY RL+ TM+
Sbjct: 388 ICLVGILFSMAGIPPFPGFFAKAFVLLALLQKKLSGLAIVAIILSCISCFYYIRLIQTMY 447
Query: 432 FSGSG--------ERVKEGWIVIFLLLLAVLVVAIGI 460
F+ + E+ K I + +LLL V + I +
Sbjct: 448 FTDTKVLGVFYPIEKEKSIVISLSMLLLVVSFIKIDL 484
>sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432381|pir||S75795
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1001283|dbj|BAA10530.1| (D64003) NADH dehydrogenase
subunit 5 [Synechocystis sp.]
Length = 681
Score = 149 bits (372), Expect = 8e-35
Identities = 126/483 (26%), Positives = 224/483 (46%), Gaps = 47/483 (9%)
Query: 3 QVASLLIALPLISAFFVPV-----------LKRIKQSLIMPYLILITLIQTGIAGWVFYE 51
Q+A L+ LPL A V + L++I I+ L L+ +G W +
Sbjct: 6 QLAWLIPVLPLFGATVVGIGLISFNQATNKLRQINAVFIISCLGA-ALVMSGALLWDQIQ 64
Query: 52 VYTTGKPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYA 111
+ + +I A + + I +AL ++I+ V+ + +++ + +P Y
Sbjct: 65 GHASYAQMIEWASAGSFHLEMGYVIDHLSALMLVIVTSVALLVMIYTDGYMAHDP--GYV 122
Query: 112 MLFLLLMLGAT---GMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLG 167
+ L L A+ G++ + ++ +++F E+ + +Y L + AA+A K V
Sbjct: 123 RFYAYLSLFASSMLGLVISPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTN 182
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAE 221
+G L+G+ LY ATG+ + + E S ++ +A + LV G ++
Sbjct: 183 RVGDFGLLLGILGLYWATGSFDFGTIGERLEGLVSSGVLSGAIAAILAILVFLGPVAKSA 242
Query: 222 LFPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMA 280
FPL+ W PDA + P PI+ + +A +V AG++ +AR+ + + V+ +
Sbjct: 243 QFPLHVWLPDAMEG-PTPISALIHAATMVAAGVFLVARMYPVFEPI---PVVMNTIAFTG 298
Query: 281 TLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAM 340
T AL Q D+K+ +AYS+I Q+G + +A +G + AG+FH++ HA KAM
Sbjct: 299 CFTAFLGATIALTQNDIKKGLAYSTISQLGYMVMAMGIGAYS---AGLFHLMTHAYFKAM 355
Query: 341 MFLGVGYVGITLGGT---------ELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFW 391
+FL G V + G ++ GL K MP+TA IG ++ G+P F FW
Sbjct: 356 LFLCSGSVIHGMEGVVGHDPILAQDMRIMGGLRKYMPITATCFLIGTLAICGIPPFAGFW 415
Query: 392 SKFRIIVATLQAG-FIWPAILVLFASMVEAVYYFRLVHTMW---FSGSGERVKEGWIVIF 447
SK I+ QA +W + + + A Y FR+ + F G+ + K+G + +
Sbjct: 416 SKDEILGLAFQANPLLW--FVGWATAGMTAFYMFRMYFMTFEGGFRGNDQEAKDGVLQFY 473
Query: 448 LLL 450
LL
Sbjct: 474 GLL 476
>gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroideus]
>gi|7110466|gb|AAF36938.1|AF222718_12 (AF222718) NADH
dehydrogenase subunit 5 [Chrysodidymus synuroideus]
Length = 657
Score = 149 bits (372), Expect = 8e-35
Identities = 128/480 (26%), Positives = 222/480 (45%), Gaps = 59/480 (12%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
+ +L + S+FF+ IK L T + + W+F + T
Sbjct: 30 ITSLTVFSSFFISFYFFIK------LLFSGTFYKVTLFPWIFSDFLT------------- 70
Query: 68 PPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLMLGATG 123
+ N Y +++I +S + ++S++ +K +P Y LF ML
Sbjct: 71 --INWNFYFDSLTLGMLIVITFISTLVHIYSIEYMKEDPHLNRFMSYLSLFTFFMLV--- 125
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLY 182
++ + + LFV E +++Y L + T +A ++S+K +VL IG FFLI + LY
Sbjct: 126 LVTSNNFLQLFVGWEGVGLSSYLLINFWFTRIQANKSSIKAMVLNRIGDFFFLIAIFSLY 185
Query: 183 GATGTLNMAHLAELSTSINPIVAQVGLA----------LVIFGLAVEAELFPLNAWAPDA 232
T +L+ + L T I Q+G+A + G ++ L++W PDA
Sbjct: 186 LITNSLDFDVIFSLVTLIKEYYIQIGIAKFCVLDLICLCLFLGATGKSAQLGLHSWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P P++ + +A +V AG++ + R +L + + +L L++I+ ++T +FA +
Sbjct: 246 MEG-PTPVSALIHAATMVTAGVFLIIRCSFLFEYS---PLILNLIIIIGSITALFAATTG 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q D+KR+IAYS+ Q+G + A L + D G FH+ NHA KA++FLG G V
Sbjct: 302 LLQNDIKRVIAYSTCSQLGYMFFACGL---SSYDVGFFHLYNHAFFKALLFLGAGSVIHA 358
Query: 352 LGG-TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSK---FRIIVATLQAGFIW 407
L ++ K GL +P + + IG++S +G P + F+SK I A +
Sbjct: 359 LANEQDMRKMGGLRIILPFSYSIMLIGSLSLIGFPFLSGFYSKDVILEIAYAKYNTFGHF 418
Query: 408 PAILVLFASMVEAVYYFR------LVHTMWFSGSGERVKEG--WIVIFLLLLAVLVVAIG 459
L + A+ A Y R L++T F + EG + V+ L L +L + G
Sbjct: 419 AYYLGVLAAFCTAFYSTRVLILVFLINTNGFRTNILNAHEGSYFFVLPLFFLTILSIISG 478
>pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
microphylla chloroplast (fragment)
>gi|2444418|gb|AAB71603.1| (AF020485) NADH
dehydrogenase-like protein [Gleditsia microphylla]
Length = 699
Score = 148 bits (371), Expect = 1e-34
Identities = 116/452 (25%), Positives = 219/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ +++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 METIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>gi|11467101 nad2 [Marchantia polymorpha] >gi|462764|sp|P26846|NU2M_MARPO
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2
>gi|282789|pir||S25943 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
mitochondrion >gi|786186|gb|AAC09399.1| (M68929) nad2
[Marchantia polymorpha]
Length = 489
Score = 148 bits (370), Expect = 1e-34
Identities = 112/414 (27%), Positives = 190/414 (45%), Gaps = 34/414 (8%)
Query: 73 NLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATG--MIATGDI 130
NL I F + + + + T V + K E ++ + + L+L+ + MI+ D+
Sbjct: 74 NLIIDNFTYFCQIFLLLSTASTMVMCLDYFKQESLNAFESIVLILLSTCSMLFMISAYDL 133
Query: 131 FNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
+++ +E+ ++ Y + A + E + EA +KY +LG S L G +++YG TG N
Sbjct: 134 IAMYLAIELQSLCFYVIAASKRDSEFSTEAGLKYFILGAFSSGILLFGCSMIYGFTGVTN 193
Query: 190 MAHLAELSTS--INPIVAQ-----VGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV 242
LA++ T I AQ +G+ + G + P + WAPD Y+ +P +T
Sbjct: 194 FEELAKIFTGYEITLFGAQSSGIFMGILFIAVGFLFKITAVPFHMWAPDVYEGSPTIVTA 253
Query: 243 MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
FS + L M R+ W +L + ++I L+A+ Q VKR++A
Sbjct: 254 FFSIAPKISILANMLRVFIYSFYDPTWQ---QLFFFCSIASMILGALAAMAQNKVKRLLA 310
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEG 362
YSSIG +G + + FS GT G+ + +L + +M + V + + L +
Sbjct: 311 YSSIGHVGYLLIGFSCGTIEGIQS----LLIGIFIYVLMTVNVFAIVLALRQNRFKYIAD 366
Query: 363 LG---KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVE 419
LG K P+ A+ L+I S G+P F SKF + A L G A++ + S++
Sbjct: 367 LGALAKTNPILAITLSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYLLALIGVVTSVIS 426
Query: 420 AVYYFRLVHTMWFSGSGERVKEGWIVI------FLLLLAVLVVAIG---IYPTP 464
YY R V M+F + W++ LLLA+ V I +YP+P
Sbjct: 427 CFYYIRFVKIMYFD-----TPKTWVLYKPMDREKSLLLAITVFFITFFFLYPSP 475
>sp|P05510|NU5M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|101886|pir||S10843 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Neurospora crassa mitochondrion
Length = 715
Score = 148 bits (370), Expect = 1e-34
Identities = 115/428 (26%), Positives = 216/428 (49%), Gaps = 25/428 (5%)
Query: 8 LIALPLISAFFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+I LPL+ + +++ S L +I TG+A F+EV P+ I W
Sbjct: 5 IIILPLLGSIVAGFFGRKVGVSGAQLITCLSVIITTGLAILAFFEVGFNNIPVTINLFRW 64
Query: 67 RPPVGINLYIG-PFAALFVLI---IAVVSFITAVFSVKAVKVEPIDK----YAMLFLLLM 118
N+ G F +L V + + ++S + ++S+ + +P ++ Y LF +M
Sbjct: 65 IDSEWYNILWGFQFDSLTVAMLIPVLIISSLVHIYSISYMSHDPHNQRFFSYLSLFTFMM 124
Query: 119 LGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIG 177
+ ++ + +FV E + +Y L ++ T AA ++SM + +G F IG
Sbjct: 125 II---LVTANNYLLMFVGWEGVGVCSYLLVSFWFTRIAANQSSMSAFLTNRVGDCFLTIG 181
Query: 178 VALLYGATGTLNMAHLAELSTSINPIVAQV-GLALVIFGLAVEAELFPLNAWAPDAYQAA 236
+ ++ G L+ A + L+ IN +A + G+ L+I +A +++ L+ W P A +
Sbjct: 182 MFVVLWTLGNLDYATVFSLAPYINSDIATIIGICLLIGAMAKSSQV-GLHVWLPMAMEG- 239
Query: 237 PHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQR 295
P P++ + +A +V AG+Y + R L++ + S+VL L L + +T +F+ L L Q+
Sbjct: 240 PTPVSALIHAATMVTAGVYLLMRSSPLIEYS---STVLLLCLWLGAITTVFSSLIGLFQQ 296
Query: 296 DVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG-YVGITLGG 354
D+K++IAYS++ Q+G++ +A L + + +FH++NHA KA++FLG G +
Sbjct: 297 DIKKVIAYSTMSQLGMMVIAIGL---SSYNVALFHLINHAFYKALLFLGAGSVIHAVADN 353
Query: 355 TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLF 414
+ KF GL +PLT + I ++S V P F+SK I+ + F + + V
Sbjct: 354 QDFRKFGGLKNYLPLTYSVMLIASLSLVAFPYMTGFYSK-DFILESAYGQFSFSGVAVYI 412
Query: 415 ASMVEAVY 422
+ + A++
Sbjct: 413 IATIGAIF 420
>pir||S37071 NADH dehydrogenase I chain nuoN - Escherichia coli
>gi|416009|emb|CAA48373.1| (X68301) NADH dehydrogenase
I, subunit nuoN [Escherichia coli]
Length = 425
Score = 148 bits (370), Expect = 1e-34
Identities = 114/419 (27%), Positives = 194/419 (46%), Gaps = 34/419 (8%)
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKV--EPIDKYAMLFLLLMLGATGMIATGDIF-NLFV 135
FA L+ ++ + S T F+ ++ + D++ +L L+ LG ++A I+ +LF+
Sbjct: 12 FAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGI-LLANATIWRSLFL 70
Query: 136 FMEITAITAYALTAYN-KTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLA 194
+E+ ++ + L Y + + EAS+KY +L SSF L G+AL+Y +G L+ L
Sbjct: 71 GIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALG 130
Query: 195 EL--STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAG 252
+ +N + G L+I GL + L P + W PD YQ AP P++ F A K
Sbjct: 131 KNLGDGMLNDALLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST-FLATASKIA 189
Query: 253 LYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIG-- 310
++ + L+L V R ++IF L AL Q ++KR++ YSSI +G
Sbjct: 190 IFGVVMRLFLYAPVGDSEQVRRGAGDYRFASIIFGNLMALSQTNIKRLLGYSSISHLGYL 249
Query: 311 LIAL-AFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL---------GGTELEKF 360
L+AL A G + GV+ + +F +G G+ L +
Sbjct: 250 LVALIALQTGEMSMEAVGVY-------LAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSY 302
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
GL P+ A +T+ +S G+P+ F KF ++ +QA W V+ S +
Sbjct: 303 RGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGL 362
Query: 421 VYYFRLVHTMWFSG---SGERVKEGWIV----IFLLLLAVLVVAIGIYPTPAWEIVKRA 472
YY R+ +++ G W I +L+ A+LV+ +G++P P IV+ A
Sbjct: 363 YYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLA 421
>sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||A65024 hypothetical
protein b2482 (bcp 3' region) - Escherichia coli (strain
K-12) >gi|1788827|gb|AAC75535.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1799910|dbj|BAA16360.1| (D90876) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|1805541|dbj|BAA16370.1| (D90877) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|2668496|gb|AAB88564.1| (M63654) HyfB [Escherichia
coli]
Length = 672
Score = 148 bits (370), Expect = 1e-34
Identities = 123/466 (26%), Positives = 224/466 (47%), Gaps = 51/466 (10%)
Query: 60 IIMAGGWRPP---VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVK-VEPIDKYAMLFL 115
+ + + PP + L + +A VL+I+++ + +++S+ ++ E AM F
Sbjct: 58 VTLVARFAPPFEFADLTLRMDSLSAFMVLVISLLVVVCSLYSLTYMREYEGKGAAAMGFF 117
Query: 116 LLMLGAT--GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSF 173
+ + A+ ++ + F V E+ +++++ L + + A M Y + GS
Sbjct: 118 MNIFIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVL 177
Query: 174 FLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAY 233
+I L+ +G+L+ A LS S P +A L FG +A + PL++W P A+
Sbjct: 178 IMIAFLLMGRESGSLDFASFRTLSLS--PGLASAVFLLAFFGFGAKAGMMPLHSWLPRAH 235
Query: 234 QAAPHPITVMFSAFVVKAGLYAMARILYLLQKANG---WSSVLRLVLIMATLTVIFAELS 290
AAP + + S +VK G++ + ++ L G W +L V+ + ++ + L
Sbjct: 236 PAAPSHASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWGIL--VMAIGAISALLGVLY 293
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLG-----------TQAGVDAGVFHMLNHAIVKA 339
AL ++D+KR++A+S++ +G+I LA + T G+ +FH+LNHA+ K
Sbjct: 294 ALAEQDIKRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKG 353
Query: 340 MMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKF----- 394
++FLG G + L ++EK L KRMP TA A IG ++ +P N F S++
Sbjct: 354 LLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQS 413
Query: 395 -----RIIVATLQ-AGFIWPAILVLFASMVEAVYYFRLVHTMWFSGS-----GERVKE-- 441
R+ LQ AG I A+++L + AV F ++ + F G+ E +E
Sbjct: 414 LFSLSRVEAVALQLAGPI--AMVMLAVTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVP 471
Query: 442 GWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFAVANYVKNVP 487
+++ +LLLA L V I + + +W K I +A+ N P
Sbjct: 472 NTMIVAMLLLAALCVLIAL--SASWLAPK-----IMHIAHAFTNTP 510
>gi|9653248 NADH dehydrogenase subunit 2 [Chondrus crispus]
>gi|1352546|sp|P48903|NU2M_CHOCR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2 >gi|7432023|pir||S59103 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - red
alga (Chondrus crispus) mitochondrion
>gi|1334497|emb|CAA87619.1| (Z47547) NADH dehydrogenase
(ubiquinone), subunit 2 [Chondrus crispus]
Length = 497
Score = 148 bits (370), Expect = 1e-34
Identities = 103/387 (26%), Positives = 186/387 (47%), Gaps = 30/387 (7%)
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKVEPID--KYAMLFLLLMLGATGMIATGDIFNLFVF 136
F ++ + + +I FS + E I+ +Y +L LL ++ +I + D+ +++
Sbjct: 83 FKTKCLIFLMCLGWILITFSY--INYERINSFEYWILILLAIVAILFIIQSYDLLTMYLS 140
Query: 137 MEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAE 195
+E ++ Y L ++ +T E + EA +KY VLG S L G +L+YG TG N LA+
Sbjct: 141 IEFQSLIFYILASFKRTSEFSTEAGLKYFVLGAFSSGLLLFGSSLIYGLTGLTNFLDLAK 200
Query: 196 LSTSI------NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVV 249
T + + I G L++ L + P + WAPD Y+ +P IT+ FS
Sbjct: 201 FFTGMPMLELSSWIGLTTGFTLILVSLLFKLSAAPFHMWAPDVYEGSPTSITLFFSIMPK 260
Query: 250 KAGLYAMARILYLLQKANGWSSVLRLVLIMATL-TVIFAELSALRQRDVKRMIAYSSIGQ 308
A L + ++L L + + + R+++++ + +++ LSA Q KR IAYSSI
Sbjct: 261 LAILSLLLKLLIL--SFHDFITFWRIIILICIIFSIMIGTLSAFSQIKWKRFIAYSSISH 318
Query: 309 IGLIALAFSLGTQAGVDAGVFHMLNHAI--------VKAMMFLGVGYVGITLGGTELEKF 360
+G LA G G+ + +F+++ + I + + F Y T L+
Sbjct: 319 VGFFLLAILSGNLEGISSSIFYVIIYVITMLGIFSFILTLRFYNYSYHYQT---RYLQDL 375
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEA 420
L + P A++LT+ S G+P F++K ++++ LQ +I V+ S +
Sbjct: 376 ISLSRFNPALAISLTLFLFSMAGIPPLGGFFAKLFVLLSVLQTKSFGISIFVVLMSCISC 435
Query: 421 VYYFRLVHTMWFSGSGERVKEGWIVIF 447
YY +L+ +M+FS E W V++
Sbjct: 436 FYYIKLIKSMYFSSINE-----WKVLY 457
>gb|AAF08181.1| (AF130225) NADH dehydrogenase subunit F [Rhamnus davurica]
Length = 706
Score = 148 bits (370), Expect = 1e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
LL+ + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 11 LLVGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMLFSAHIFIQQINNSS--IYLYVWSW 66
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ VL+I V + ++S + + Y F + +T
Sbjct: 67 IINNDFSLEFGYLIDPLTSIMVLLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 124
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 125 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 184
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 185 LGFYWITGSLEFRDLFEIFNNVVYNNEVNFLFVTLCAFLLFAGAIAKSAQFPLHVWLPDA 244
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ ++ ++ +T+ A
Sbjct: 245 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNIIALIGIITLFLGATFA 300
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 301 LVQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 357
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 358 METIVGYSPNKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILNDSWL 417
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + + A Y FR ++ + F G
Sbjct: 418 YSPIF-AIIACYTAGLTAFYMFR-IYLLTFEG 447
>gb|AAF08156.1| (AF130200) NADH dehydrogenase subunit F [Osmorhiza claytonii]
Length = 735
Score = 148 bits (370), Expect = 1e-34
Identities = 104/379 (27%), Positives = 188/379 (49%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I + + ++S + + Y F + +T G++ + ++
Sbjct: 80 IDPLTSIMSILITTIGILVLIYSDNYMSYD--QGYLRFFAYMSFFSTSMLGLVTSSNLIQ 137
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ +++Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 138 IYIFWELVGMSSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFR 197
Query: 192 HLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L ++ + +N + + L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 198 DLFKILNNLIYNNEVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 256
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ + ++ +T++F AL Q+D+KR +AYS
Sbjct: 257 AATMVAAGIFLVARLLPLFIVI---PHIMNFISLVGVITILFGATFALAQKDIKRGLAYS 313
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEKFE 361
++ Q+G + LA +G+ + +FH++ HA KA++FLG G V TL G K +
Sbjct: 314 TMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHSMETLVGYSPNKSQ 370
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL K +PLT A +G +S G+P FWSK I+ T I+ AI+ F
Sbjct: 371 NMVFMGGLTKHVPLTKTAFLLGTLSLCGIPPLACFWSKDEILNDTWLYSPIF-AIIAWFT 429
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F G
Sbjct: 430 AGLTAFYMFR-IYVLTFEG 447
>pir||F70749 probable hycQ protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1405756|emb|CAA98922.1| (Z74410) hycQ [Mycobacterium
tuberculosis]
Length = 488
Score = 148 bits (369), Expect = 2e-34
Identities = 100/373 (26%), Positives = 180/373 (47%), Gaps = 19/373 (5%)
Query: 62 MAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVE----PIDK-----YAM 112
M G + +G L + +++I +V + S+ + E ID Y +
Sbjct: 50 MGSGAQFGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGV 109
Query: 113 LFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSS 172
L + + +I ++V +E T + L + +T A EA+ KY+V+ +G +
Sbjct: 110 LTPAFLCAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIA 169
Query: 173 FFLIGVALLY--------GATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFP 224
+G LLY A G LN+ LAE + ++P VA++ L++ G +A LFP
Sbjct: 170 VAFLGTVLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFP 229
Query: 225 LNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTV 284
+ W DA+ AP P++ + S ++ + R+ +L +G + + +L++ T+
Sbjct: 230 FHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATL 289
Query: 285 IFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLG 344
+ A L DVKRM+AYSS+ +GLIA+A + GT + A + H+L H I K ++FL
Sbjct: 290 LVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLA 349
Query: 345 VGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII--VATLQ 402
G + T + G+ +R L ++ +G + +G+P F +F S+ I +A +
Sbjct: 350 GGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANER 409
Query: 403 AGFIWPAILVLFA 415
++ A L+L A
Sbjct: 410 LAWVLGAALLLIA 422
>pir||T12624 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Aristida
longiseta chloroplast (fragment)
>gi|755825|gb|AAA64771.1| (U21966) NADH dehydrogenase F
[Aristida longiseta]
Length = 702
Score = 148 bits (369), Expect = 2e-34
Identities = 117/457 (25%), Positives = 217/457 (46%), Gaps = 44/457 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + + G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFFLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFA 287
W PDA + P PI+ + A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHATMVAAGIFLLARLLPLFISL---PFIMSFISLVGTITLFLG 296
Query: 288 ELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGY 347
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 ATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGS 353
Query: 348 VGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV 398
V + L G +K + GL K +P+T G +S G+P FWSK II
Sbjct: 354 VIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIIS 413
Query: 399 -ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F+ I+ F++ + A Y FR ++ + F G
Sbjct: 414 NSWLYSPFL--GIIASFSAGLTAFYMFR-IYLLTFDG 447
>pir||T13696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - smut grass
chloroplast (fragment) >gi|755855|gb|AAA64701.1|
(U21983) NADH dehydrogenase F [Sporobolus indicus]
Length = 703
Score = 148 bits (369), Expect = 2e-34
Identities = 104/379 (27%), Positives = 189/379 (49%), Gaps = 32/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ +++I V + ++S + + + Y F+ + T G++ + ++
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYISFFNTSMLGLVTSSNLIQ 138
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
++ F E+ + +Y L + T AA A K V +G L+G+ + TG+L
Sbjct: 139 IYFFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFR 198
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFS 245
L +++ + IN ++ + L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 199 DLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 257
Query: 246 AFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSS 305
A +V AG++ +AR+L L + ++ + ++ T+T+ AL QRD+KR +AYS+
Sbjct: 258 ATMVAAGIFLIARLLPLFRSL---PFIMSFISLVGTITLFLGATLALAQRDIKRSLAYST 314
Query: 306 IGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT---LGGTELEKFE- 361
+ Q+G + LA +G+ A +FH++ HA KA++FLG G V + L G +K +
Sbjct: 315 MSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQN 371
Query: 362 -----GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV-ATLQAGFIWPAILVLFA 415
GL K +P+T G +S G+P FWSK I+ + L + F I+ F
Sbjct: 372 MVLMGGLKKYVPITKTTFLCGTLSLCGIPPLACFWSKDEILSNSWLYSPFF--GIIASFT 429
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F G
Sbjct: 430 AGLTAFYMFR-IYLLTFDG 447
>gb|AAA64705.1| (U21987) NADH dehydrogenase F [Zeugites pittieri]
Length = 701
Score = 148 bits (369), Expect = 2e-34
Identities = 117/457 (25%), Positives = 216/457 (46%), Gaps = 44/457 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELS------TSINPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ T IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNTGINSLLTTLFAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFA 287
W PDA + P PI+ + A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHATMVAAGIFLVARLLPLFISL---PLIMSFISLVGTVTLFLG 296
Query: 288 ELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGY 347
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 ATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGS 353
Query: 348 VGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV 398
+ + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 IIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILS 413
Query: 399 -ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 NSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 447
>gb|AAF79015.1| (L75935) NADH dehydrogenase F [Guzmania sanguinea]
Length = 691
Score = 148 bits (369), Expect = 2e-34
Identities = 104/379 (27%), Positives = 192/379 (50%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 195
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ L+ ++ +T++ AL QRD+K+ +AYS
Sbjct: 255 AATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGVITLLLGATLALAQRDIKKSLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 312 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 368
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 369 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 427
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 428 AGLTAFYMFR-VYLLTFDG 445
>pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - chloroplast
Avena sativa (fragment) >gi|726164|gb|AAA64204.1|
(U22000) NADH dehydrogenase F [Avena sativa]
Length = 702
Score = 147 bits (368), Expect = 2e-34
Identities = 119/458 (25%), Positives = 220/458 (47%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + FF+P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFFIPTATKNLRRIWAFPSVLLLSIAMVFSVQLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTVNNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSLISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
+ + L G +K + GL K +P+T A G +S G+P FWSK I+
Sbjct: 354 SIIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRSAFLWGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAA64703.1| (U21985) NADH dehydrogenase F [Zea mays]
Length = 701
Score = 147 bits (368), Expect = 2e-34
Identities = 117/457 (25%), Positives = 216/457 (46%), Gaps = 44/457 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFA 287
W PDA + P PI+ + A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAAMVAAGIFLLARLLPLFISL---PLIMSFISLIGTITLFLG 296
Query: 288 ELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGY 347
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 ATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGS 353
Query: 348 VGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV 398
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 VIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILS 413
Query: 399 -ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 NSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 447
>gb|AAF79012.1| (L75879) NADH dehydrogenase F [Tillandsia dodsonii]
Length = 693
Score = 147 bits (368), Expect = 2e-34
Identities = 104/379 (27%), Positives = 190/379 (49%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TGTL
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGTLEFR 195
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
A +V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS
Sbjct: 255 XATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 312 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 368
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 369 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 427
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 428 AGLTAFYMFR-VYLLTFDG 445
>gb|AAF79018.1| (L75932) NADH dehydrogenase F [Guzmania nicaraguensis]
Length = 691
Score = 147 bits (368), Expect = 2e-34
Identities = 104/379 (27%), Positives = 192/379 (50%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 195
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHIWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ L+ ++ +T++ AL QRD+K+ +AYS
Sbjct: 255 AATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGVITLLLGATLALAQRDIKKSLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 312 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 368
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 369 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 427
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 428 AGLTAFYMFR-VYLLTFDG 445
>pir||T12170 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
australis chloroplast (fragment)
>gi|2444412|gb|AAB71600.1| (AF020482) NADH
dehydrogenase-like protein [Gleditsia australis]
Length = 699
Score = 147 bits (367), Expect = 3e-34
Identities = 115/452 (25%), Positives = 219/452 (48%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ +++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12171 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
australis chloroplast (fragment)
>gi|2444414|gb|AAB71601.1| (AF020483) NADH
dehydrogenase-like protein [Gleditsia australis]
Length = 699
Score = 147 bits (367), Expect = 3e-34
Identities = 115/452 (25%), Positives = 219/452 (48%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ +++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12172 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
fera chloroplast (fragment) >gi|2444416|gb|AAB71602.1|
(AF020484) NADH dehydrogenase-like protein [Gleditsia
fera]
Length = 699
Score = 147 bits (367), Expect = 3e-34
Identities = 115/452 (25%), Positives = 219/452 (48%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ +++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEILNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12559 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Arrabidaea
pubescens chloroplast (fragment)
>gi|3851727|gb|AAC72416.1| (AF102625) NADH dehydrogenase
subunit [Arrabidaea pubescens]
Length = 698
Score = 147 bits (367), Expect = 3e-34
Identities = 114/452 (25%), Positives = 217/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ ++ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWTFPSILLLSIVMIFATNLSIQQINSSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
G +L G P ++ +++I V + ++S + + + Y F + +T
Sbjct: 68 TLDNGFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--EGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLLQIYIFWELVGMCSYLLIGFWSTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLISNNEVNCPFVTLCAALLFVGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKASFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocleista grandiflora]
Length = 732
Score = 147 bits (367), Expect = 3e-34
Identities = 104/382 (27%), Positives = 188/382 (48%), Gaps = 37/382 (9%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ +++I V +S + + Y F + +T G++ + ++
Sbjct: 89 IDPLTSIMLILITTVGITVLFYSDNYMAHD--QSYLKFFTYMSFFSTSMLGLVTSANLIQ 146
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ +++Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 147 IYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFE 206
Query: 192 HLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L E+ + +NP+ + L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 207 DLFEIVNNLISNNEVNPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDAMEG-PTPISALIH 265
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L S++ L+ ++A +TV+ AL Q+D+KR +AYS
Sbjct: 266 AATMVAAGIFLVARLLPLFIVI---PSIMNLISLIAIITVLLGATLALAQKDIKRGLAYS 322
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--------YVGIT-LGGT 355
++ Q+G + LA +G+ +FH++ HA KA++FLG G VG +
Sbjct: 323 TMSQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSIIHSMERLVGYSPYKSQ 379
Query: 356 ELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWP---AILV 412
+ GLGK +P+T + +G +S G+P FWSK I L +++ A++
Sbjct: 380 NMVLMGGLGKHIPITKTSFFLGTLSLSGIPPLACFWSKDEI----LNDSWLYSPTFALIA 435
Query: 413 LFASMVEAVYYFRLVHTMWFSG 434
F + + A Y FR ++ + F G
Sbjct: 436 WFTAGLTAFYMFR-IYFLTFEG 456
>sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN N 2)
Length = 344
Score = 147 bits (367), Expect = 3e-34
Identities = 101/344 (29%), Positives = 168/344 (48%), Gaps = 26/344 (7%)
Query: 137 MEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAE 195
+E+ + Y LT + K + EA++KY++LG + ++ FL GV+L+YG TGT + +AE
Sbjct: 1 LELMVLCTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLYGVSLIYGLTGTTQLDRMAE 60
Query: 196 LSTSINPIVAQVGLALV--IFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGL 253
+ S P+ + LA+V + GL + P + W PD Y+ AP IT S AG
Sbjct: 61 -AVSGGPLDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMSVAPKAAGF 119
Query: 254 YAMARILY--LLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGL 311
+ R+ L++ +N W +V +A T+ AL Q + KR++AYSSI G
Sbjct: 120 AVILRVFLNPLVEASNAWI----IVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGF 175
Query: 312 IALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITL-------GGTELEKFEGLG 364
G Q G+ + + ++L + F+ +G G + G +E + G
Sbjct: 176 AIFGVVAGGQDGIASVMLYLLIYT------FMNLGIFGAVIMMRNGDFSGEVIEDYAGFA 229
Query: 365 KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYF 424
K P AL + + S G+P F++KF ++VA ++ GF+ A++ + S+V A +Y
Sbjct: 230 KFHPGLALLMLLYLFSLAGIPPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYI 289
Query: 425 RLVHTMWFSGSGERVKEGWI--VIFLLLLAVLVVAIGIYPTPAW 466
R+V ++ ER E + ++ L IGI PAW
Sbjct: 290 RIVMVIYMR-EPERAFEPALTPLVSATLAFTAAGTIGIGLFPAW 332
>gb|AAF79002.1| (L75909) NADH dehydrogenase F [Vriesea triligulata]
Length = 691
Score = 147 bits (367), Expect = 3e-34
Identities = 103/379 (27%), Positives = 191/379 (50%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 195
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS
Sbjct: 255 AATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 312 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 368
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 369 NMVLMGGLARYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 427
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 428 AGLTAFYMFR-VYLLTFDG 445
>gb|AAA68607.1| (U27296) NADH dehydrogenase F [Chasmanthium laxum var.
sessiliflorum]
Length = 701
Score = 147 bits (367), Expect = 3e-34
Identities = 115/457 (25%), Positives = 218/457 (47%), Gaps = 44/457 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + +N +++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGMNSLLSTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFA 287
W PDA + P PI+ + A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFLG 296
Query: 288 ELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGY 347
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 ATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGS 353
Query: 348 VGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV 398
+ + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 IIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITKTTFLCGTLSLCGIPPLACFWSKDEILS 413
Query: 399 -ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F+ I+ F + + A Y FR ++ + F G
Sbjct: 414 NSWLYSPFL--GIIASFTAGLTAFYMFR-IYLLTFDG 447
>emb|CAC17760.1| (AJ400890) NADH dehydrogenase subunit F [Grubbia tomentosa]
Length = 703
Score = 147 bits (367), Expect = 3e-34
Identities = 107/379 (28%), Positives = 185/379 (48%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
+ P ++ ++I V + ++S + + Y F + +T G++ + ++
Sbjct: 87 VDPLTSIMSILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFFSTSMLGLVTSSNLIQ 144
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K G L+G+ LY TG+
Sbjct: 145 IYIFWELVGMCSYLLIGFWFTRPVAAXACQKAFXTNRXGDFGLLLGILGLYWITGSFEFR 204
Query: 192 HLAELSTSI------NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L E+ ++ NP+ A V AL+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 205 DLFEIXNNLIHNNEXNPVFATVCAALLFXGAXAKSAQFPLHXWLPDAME-GPTPISALIH 263
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L ++ L+ + +TV+ AL QRD+KR +AYS
Sbjct: 264 AATMVAAGIFLVARLLPXFIVI---PYIMNLISSIGXITVLLGATLALAQRDIKRSLAYS 320
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEKFE 361
++ Q+G + LA +G+ +FH++ HA KA++FLG G V T+ G +K +
Sbjct: 321 TMSQLGYMMLALGMGS---YQTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQ 377
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL K +P+T A +G +S G+P FWSK I+ + I+ I L A
Sbjct: 378 NMVLMGGLTKHVPITKTAFFLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACLTA 437
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ A Y FR ++ + F G
Sbjct: 438 GLT-AFYMFR-IYLLTFEG 454
>pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Streptomyces coelicolor >gi|5042265|emb|CAB44519.1|
(AL078618) nuoM, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 523
Score = 146 bits (366), Expect = 4e-34
Identities = 126/500 (25%), Positives = 222/500 (44%), Gaps = 45/500 (9%)
Query: 10 ALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPI-IIMAGGWRP 68
ALP + A + K++ +L++L G+A V G + + W
Sbjct: 11 ALPAVGAIATAAVPAAKRTAAKWLALLVSLATLGLAIAVLVRFDPDGDRYQLTESHSWIA 70
Query: 69 PVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPID------KYAMLFLLLMLGAT 122
G+ +G LI I + +P++ + F L+L
Sbjct: 71 DFGVRYELGVDGIAVALIALTALLIPFIILAGWHDADPLETGSSRWRPTQGFFALILAVE 130
Query: 123 GMIATG----DIFNLFVFMEITAITAYALTAY---------NKTG--EAAEASMKYIVLG 167
M+ D+F ++F E I Y L KT + + A++K+++
Sbjct: 131 AMVIISFEATDVFLFYIFFEAMLIPLYFLIGGFGDRAHEHGEKTAATQRSYAAVKFLLYN 190
Query: 168 GIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVA---QVGLAL-VIFGLAVEAELF 223
G L V LY G ++ +AE + + +A + L L F AV+A LF
Sbjct: 191 LAGGLIMLAAVIGLYVVAGNFSLTEIAEARANGSLDMATSTERWLFLGFFFAFAVKAPLF 250
Query: 224 PLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARI-LYLLQKANGWSSVLRLVLIMATL 282
PL+ W P+A + P+ V+ +A V K G +AM R L L +A+ W++ + +L++A +
Sbjct: 251 PLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWATPV--ILVLAVI 308
Query: 283 TVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMF 342
++I+ L A+ QRD+KR+IAY+SI G I + T G +M+NH I A++
Sbjct: 309 SIIYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAMTSQGQSGATLYMVNHGISTAVLM 368
Query: 343 LGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
L G++ G + F G+ K P+ A IG ++T+ +P F S+F ++V T
Sbjct: 369 LIAGFLISRRGSRLIADFGGVQKVAPILAGTFLIGGLATLSLPGLAPFVSEFLVLVGTFT 428
Query: 403 AGFIWPAI-LVLFASMVEAVYYFRLVHTMWFSGSGE---------RVKEGWIVIFLLLLA 452
+P I ++ +V A Y +++ +G + RV+E ++ + L
Sbjct: 429 R---YPVIGIIATLGIVLAALYTLVLYQRTMTGPVKAEVNGMPDLRVRE---LVVVAPLV 482
Query: 453 VLVVAIGIYPTPAWEIVKRA 472
L++ +G++P P +IV A
Sbjct: 483 ALLIFLGVFPKPVTDIVNPA 502
>emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocleista grandiflora]
Length = 691
Score = 146 bits (366), Expect = 4e-34
Identities = 104/382 (27%), Positives = 188/382 (48%), Gaps = 37/382 (9%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ +++I V +S + + Y F + +T G++ + ++
Sbjct: 78 IDPLTSIMLILITTVGITVLFYSDNYMAHD--QSYLKFFTYMSFFSTSMLGLVTSANLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ +++Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 136 IYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFE 195
Query: 192 HLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L E+ + +NP+ + L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 DLFEIVNNLISNNEVNPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L S++ L+ ++A +TV+ AL Q+D+KR +AYS
Sbjct: 255 AATMVAAGIFLVARLLPLFIVI---PSIMNLISLIAIITVLLGATLALAQKDIKRGLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--------YVGIT-LGGT 355
++ Q+G + LA +G+ +FH++ HA KA++FLG G VG +
Sbjct: 312 TMXQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSIIHSMERLVGYSPYKSQ 368
Query: 356 ELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWP---AILV 412
+ GLGK +P+T + +G +S G+P FWSK I L +++ A++
Sbjct: 369 NMVLMGGLGKHIPITKTSFFLGTLSLSGIPPLACFWSKDEI----LNDSWLYSPTFALIA 424
Query: 413 LFASMVEAVYYFRLVHTMWFSG 434
F + + A Y FR ++ + F G
Sbjct: 425 WFTAGLTAFYMFR-IYFLTFEG 445
>gb|AAG26154.1| (AF123806) NADH dehydrogenase subunit F [Drimys winteri]
Length = 412
Score = 146 bits (366), Expect = 4e-34
Identities = 97/342 (28%), Positives = 174/342 (50%), Gaps = 29/342 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 71 IDPLTSIMSILITTVGIMVLIYSDKYMSHD--QGYLRFFAYMSFSNTSMLGLVTSSNLIQ 128
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K +V +G L+G+ LY TG+
Sbjct: 129 IYIFWELVGMCSYLLIGFWFTRPIAANACQKALVTNRVGDFGLLLGILGLYWITGSFEFR 188
Query: 192 HLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L E+ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 189 DLFEIFNNLIHNNGVNSLFATLCASLLFAGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 247
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ L+ ++ +TV+ AL QRD+KR +AYS
Sbjct: 248 AATMVAAGIFLVARLLPLFTVI---PYIMNLISLIGVITVLLGATLALAQRDIKRSLAYS 304
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 305 TMSQLGYIMLAPGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 361
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
GL K +P+T + +G +S G+P FWSK I+
Sbjct: 362 NMVLMGGLRKYVPITKMTFLLGTLSLCGIPPLACFWSKDEIL 403
>gi|11466747 ndh5 [Marchantia polymorpha] >gi|128768|sp|P06264|NU5C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|66191|pir||DELVN5 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - liverwort (Marchantia polymorpha)
chloroplast >gi|11718|emb|CAA28129.1| (X04465) ndh5
[Marchantia polymorpha]
Length = 692
Score = 146 bits (365), Expect = 5e-34
Identities = 122/457 (26%), Positives = 222/457 (47%), Gaps = 43/457 (9%)
Query: 4 VASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMA 63
+AS+L+ + L FF +K+ ++ + ++ ++ L + + F+ TG PI
Sbjct: 17 LASILLGIGLF--FFPNSIKKFRR--LSSFISIMFLNIAMLLSFHFFWQQITGSPIHRYL 72
Query: 64 GGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLML 119
W L IG P ++ ++++ V+ + ++S + + + Y F L L
Sbjct: 73 WSWVLYKNFVLEIGYLLDPLTSIMLVLVTTVAVMVMIYSDSYMFYD--EGYIKFFCYLSL 130
Query: 120 ---GATGMIATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFL 175
G++ + ++ +++F E+ + +Y L + T AA A K V IG L
Sbjct: 131 FTASMLGLVLSPNLIQVYIFWELVGMCSYLLIGFWFTRPSAANACQKAFVTNRIGDFGLL 190
Query: 176 IGVALLYGATGTLNMAHLAE-----LS-TSINPIVAQVGLALVIFGLAVEAELFPLNAWA 229
+G+ Y TG+ + L++ LS IN + A + + G ++ FPL+ W
Sbjct: 191 LGILGFYWITGSFDFQQLSKRFFELLSYNQINLVFATLCALFLFLGPVAKSAQFPLHIWL 250
Query: 230 PDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAE 288
PDA + P PI+ + +A +V AG++ +AR+ L Q V+ ++ +T +
Sbjct: 251 PDAMEG-PTPISALIHAATMVAAGIFLVARMFPLFQML---PFVMSIISWTGAITALLGA 306
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV 348
AL Q+D+K+ +AYS++ Q+G + LA +G+ AG+FH++ HA KA++FLG G V
Sbjct: 307 TIALAQKDLKKGLAYSTMSQLGYMMLALGIGSYK---AGLFHLITHAYSKALLFLGSGSV 363
Query: 349 GITLG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
++ G K + GL + MP+TA+ G +S G+P F FWSK I+V
Sbjct: 364 IHSMEPIVGYHPNKSQNMIFMGGLRQYMPITAITFLFGTLSLCGIPPFACFWSKDEILV- 422
Query: 400 TLQAGFIWPAI--LVLFASMVEAVYYFRLVHTMWFSG 434
+ +P + + F + + A Y FR ++ + F G
Sbjct: 423 --NSWLHFPILGSIAFFTAGLTAFYMFR-IYFLTFEG 456
>pir||T12665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
cuneatus chloroplast (fragment)
>gi|1773311|gb|AAB41639.1| (U78900) NADH dehydrogenase
[Ceanothus cuneatus]
Length = 707
Score = 146 bits (365), Expect = 5e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIFNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFLGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDAILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAFSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12751 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
prostratus chloroplast (fragment)
>gi|1773313|gb|AAB41640.1| (U78901) NADH dehydrogenase
[Ceanothus prostratus]
Length = 707
Score = 146 bits (365), Expect = 5e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIFNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFLGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDAILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAFSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12752 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
pumilus chloroplast (fragment)
>gi|1773315|gb|AAB41641.1| (U78902) NADH dehydrogenase
[Ceanothus pumilus]
Length = 707
Score = 146 bits (365), Expect = 5e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIFNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFLGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDAILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAFSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12161 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Kentucky
coffee tree chloroplast (fragment)
>gi|2444386|gb|AAB71587.1| (AF020469) NADH
dehydrogenase-like protein [Gymnocladus dioica]
Length = 698
Score = 146 bits (365), Expect = 5e-34
Identities = 116/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWTFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFKNLIDNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK II +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGILSLCGIPPFACFWSKDEIINDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12167 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
delavayi chloroplast (fragment)
>gi|2444402|gb|AAB71595.1| (AF020477) NADH
dehydrogenase-like protein [Gleditsia delavayi]
>gi|2444404|gb|AAB71596.1| (AF020478) NADH
dehydrogenase-like protein [Gleditsia caspica]
Length = 699
Score = 146 bits (365), Expect = 5e-34
Identities = 116/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TVI A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVILGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12168 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
rolfei chloroplast (fragment) >gi|2444406|gb|AAB71597.1|
(AF020479) NADH dehydrogenase-like protein [Gleditsia
rolfei]
Length = 699
Score = 146 bits (365), Expect = 5e-34
Identities = 116/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++L+ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSLVMIFSMDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12586 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Oroxylum
indicum chloroplast (fragment)
>gi|3851747|gb|AAC72426.1| (AF102635) NADH dehydrogenase
subunit [Oroxylum indicum]
Length = 698
Score = 146 bits (365), Expect = 5e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ +++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMVFATNLSIHQINTSS--IYQYIWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + +T
Sbjct: 68 TLNNDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K + +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFITNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TGT L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGTFEFRDLFEIFNNLISNNEVNSPFVTLCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHDATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ T
Sbjct: 359 METIVGYSPDKSQNMVFMGGLTKYVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDTWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF08128.1| (AF130166) NADH dehydrogenase subunit F [Matelea biflora]
Length = 720
Score = 146 bits (365), Expect = 5e-34
Identities = 103/380 (27%), Positives = 186/380 (48%), Gaps = 33/380 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLMLGATGMIATGDIF 131
I P ++ ++I V ++S + + Y F MLG ++ + ++
Sbjct: 89 IDPLTSIMSMLITTVGIFVLIYSDNYMAHDQGYLRFFAYMSFFSASMLG---LVTSSNLV 145
Query: 132 NLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNM 190
+++F E+ + +Y L + T +AA A K V +G +G+ Y TG+
Sbjct: 146 QIYLFWELVGMCSYLLIGFWFTRPQAANACQKAFVTNRVGDFGLFVGILGFYWITGSFEF 205
Query: 191 AHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF 244
L E+ + +N + + L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 206 QDLFEIVNDLICNNQVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEG-PTPISALI 264
Query: 245 -SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAY 303
+A +V AG++ +AR+L L S++ L+ ++A +TV+ AL Q+D+KR +AY
Sbjct: 265 HAATMVAAGIFLVARLLPLFVVI---PSIMNLISLIAIITVLLGATLALAQKDIKRGLAY 321
Query: 304 SSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGG--------- 354
S++ Q+G + LA +G+ + +FH++ HA KA++FLG G V ++ G
Sbjct: 322 STMSQLGYMMLALGMGS---YQSALFHLITHAYSKALLFLGSGSVIHSMEGIVGYSPYKS 378
Query: 355 TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLF 414
+ GL K +P+T + +G +S G+P FWSK I+ T I+ AI+
Sbjct: 379 QNMSLMGGLRKHLPITKMIFLLGTLSLCGIPPLACFWSKDEILNDTWLYSTIF-AIIAWV 437
Query: 415 ASMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F+G
Sbjct: 438 TAGLTAFYMFR-IYLLTFAG 456
>pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Deinococcus
radiodurans (strain R1)
>gi|6458595|gb|AAF10453.1|AE001941_6 (AE001941)
NADH-ubiquinone/plastoquinone subunit, putative
[Deinococcus radiodurans]
Length = 814
Score = 146 bits (365), Expect = 5e-34
Identities = 108/378 (28%), Positives = 190/378 (49%), Gaps = 15/378 (3%)
Query: 66 WRPPVGINLYI--GPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLF-LLLMLGAT 122
W P +G+NL F+ LF +I V+ + ++SV + +K+ + LL G +
Sbjct: 59 WVPELGLNLVFRGDGFSLLFAALIGVIGTLATLYSVAYLSAG--EKFGRFYPYLLCFGGS 116
Query: 123 --GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGVA 179
G++ + ++ LF F E+T++T++ L T AA + ++K ++ +G L A
Sbjct: 117 MLGLVLSDNLVALFGFWEMTSVTSFLLIGLWHTRSAARDGAVKAFLISALGGLGLLAAAA 176
Query: 180 LLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHP 239
+L A G+ N++ L + +P+ L ++ A+L P + W P A +A P P
Sbjct: 177 MLSIAGGSPNLSQLDLGAVRASPLFVPALLCTLLAAFTKSAQL-PFHIWLPTAMEA-PTP 234
Query: 240 ITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
I+ + SA +VKAG+ +A+ + + WS + + + LT+++ ALRQ D+K
Sbjct: 235 ISAFLHSATMVKAGVVLVAKFGLIFGTSALWSGI---TVPLGLLTMVWGSWLALRQTDLK 291
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELE 358
++AYS++ Q+GL+ + L G A H+LNHA KA +F VG + G ++
Sbjct: 292 ALLAYSTVSQLGLLMSLYGLADAGGRFAATAHLLNHAAFKAALFFVVGIIDHETGTRQIP 351
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
+ L ++MP+T + + A+S G+P F SK L+AG + A+ VL S +
Sbjct: 352 YLQNLRRQMPVTFVIALLAALSMAGLPPLGGFVSKELFYENMLRAGPGFIAVAVL-GSAL 410
Query: 419 EAVYYFRLVHTMWFSGSG 436
Y RL+ + SG
Sbjct: 411 TLAYSARLLSIFFAPRSG 428
>gb|AAF78998.1| (L75913) NADH dehydrogenase F [Vriesea gladioliflora]
Length = 693
Score = 146 bits (365), Expect = 5e-34
Identities = 103/379 (27%), Positives = 191/379 (50%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 80 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 137
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 138 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 197
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 198 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 256
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS
Sbjct: 257 AATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYS 313
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 314 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 370
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 371 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 429
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 430 AGLTAFYMFR-VYLLTFDG 447
>gb|AAA64779.1| (U21974) NADH dehydrogenase F [Leersia virginica]
Length = 697
Score = 146 bits (365), Expect = 5e-34
Identities = 115/446 (25%), Positives = 211/446 (46%), Gaps = 39/446 (8%)
Query: 14 ISAFFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGI 72
+ F +P K +++ P ++L+++ ++ TG I W
Sbjct: 18 LGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--TGSSIYQYLWSWTVNNDF 75
Query: 73 NLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMI 125
+L G P ++ +++I V + ++S + + + Y F+ + T G++
Sbjct: 76 SLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHD--EGYLRFFVYISFFNTSMLGLV 133
Query: 126 ATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGA 184
+ ++ ++ F E+ + +Y L + T AA A K V +G L+G+ +
Sbjct: 134 TSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFFWI 193
Query: 185 TGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPH 238
TG+L L +++ + IN ++ + L+ G ++ FPL+ W PDA + P
Sbjct: 194 TGSLEFRDLFKIANNWIPNNGINSLLTILCAFLLFLGAVAKSAQFPLHVWLPDAMEG-PT 252
Query: 239 PITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
PI+ + A +V AG++ +AR+L L ++ + ++ T+T+ AL QRD+K
Sbjct: 253 PISALIHATMVAAGIFLIARLLPLFISL---PLIMSFISLIGTITLFLGATLALAQRDIK 309
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT---LGGT 355
R +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G V + L G
Sbjct: 310 RSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGY 366
Query: 356 ELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV-ATLQAGFIWP 408
+K + GL K +P+T G +S G+P FWSK I+ + L + F
Sbjct: 367 SPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIPPLACFWSKDEILSNSWLYSPFF-- 424
Query: 409 AILVLFASMVEAVYYFRLVHTMWFSG 434
I+ F + + A Y FR V+ + F G
Sbjct: 425 GIIASFTAGLTAFYMFR-VYLLTFDG 449
>gb|AAF78999.1| (L75912) NADH dehydrogenase F [Vriesea espinosae]
Length = 693
Score = 146 bits (365), Expect = 5e-34
Identities = 103/379 (27%), Positives = 191/379 (50%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 80 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 137
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 138 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 197
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 198 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 256
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS
Sbjct: 257 AATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYS 313
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 314 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 370
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 371 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 429
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 430 AGLTAFYMFR-VYLLTFDG 447
>gb|AAF79007.1| (L75937) NADH dehydrogenase F [Tillandsia secunda]
Length = 655
Score = 146 bits (365), Expect = 5e-34
Identities = 103/379 (27%), Positives = 191/379 (50%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 42 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAXMSFFNTSMLGLVTSSNLIQ 99
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 100 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 159
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 160 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 218
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS
Sbjct: 219 AATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYS 275
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 276 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 332
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 333 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 391
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 392 AGLTAFYMFR-VYLLTFDG 409
>pir||T12166 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
japonica chloroplast (fragment)
>gi|2444400|gb|AAB71594.1| (AF020476) NADH
dehydrogenase-like protein [Gleditsia japonica]
>gi|2444408|gb|AAB71598.1| (AF020480) NADH
dehydrogenase-like protein [Gleditsia sinensis]
Length = 699
Score = 146 bits (364), Expect = 7e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12169 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
amorphoides chloroplast (fragment)
>gi|2444410|gb|AAB71599.1| (AF020481) NADH
dehydrogenase-like protein [Gleditsia amorphoides]
Length = 699
Score = 146 bits (364), Expect = 7e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T03469 probable hydrogenase - Rhodobacter capsulatus
>gi|3128270|gb|AAC16122.1| (AF010496) potential
poly(3-hydroxyalkanoate) polymerase PhaD subunit
[Rhodobacter capsulatus]
Length = 539
Score = 146 bits (364), Expect = 7e-34
Identities = 113/386 (29%), Positives = 186/386 (47%), Gaps = 34/386 (8%)
Query: 64 GGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATG 123
G W P GI L +AL +++ +++ V++ + + LF L++G G
Sbjct: 71 GDWVAPWGIVLVNDRLSALMLVLTGLLALPALVYAAAGWHRQG-PHFHSLFQFLLMGLNG 129
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYG 183
TGD+FNLFVF E+ +Y L + A + YI + GS+ FLIGV+L+YG
Sbjct: 130 AFLTGDLFNLFVFFELLLAASYGLLLHGGGQLRVRAGLHYIAVNLTGSALFLIGVSLIYG 189
Query: 184 ATGTLNMAHLAELSTSI---NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPI 240
A+GTLNMA LA L + + Q G AL+ ++A ++PL+ W P AY A+ P+
Sbjct: 190 ASGTLNMAQLAGLVPDLPEGRRALFQAGAALMGLAFLIKAGIWPLSFWLPTAYMASAAPV 249
Query: 241 TVMFSAFVVKAGLYAMARILYLLQKANGWSSV---LRLVLIMATLTVIFAELSALRQRDV 297
+F A + K G+Y + R+ +LL A +S +++ T++F + L + +
Sbjct: 250 AAIF-AIMTKVGVYVILRLSFLLFGAGAGASAGFGAPVLIAGGMATILFGVIGILAAQGL 308
Query: 298 KRMIAYSSIGQIGLIALAFSLGTQAGVD-----AGVFHMLNHAIVKAMMFLGV------- 345
R+ A+ + G I A + AG D A +F++LN + + +FL +
Sbjct: 309 GRIAAHLVLVSSGTILTAAGV-VLAGADGAILAAALFYLLNSTLATSALFLLIEPMSREE 367
Query: 346 ----GYVGIT-----LGGTELEKFEGLGKRMP--LTALALTIG--AVSTVGVPLFNVFWS 392
G + +T L E E G G +P LT L L+ G A++ G+P F
Sbjct: 368 GGIAGLLALTADAYGLDEREEEAAPGAGLAIPGTLTVLGLSFGACALALAGLPPLAGFLG 427
Query: 393 KFRIIVATLQAGFIWPAILVLFASMV 418
K ++ L AG A+ +FA+++
Sbjct: 428 KLGMLQGLLAAGPASAALHWIFAALL 453
>gb|AAF08190.1| (AF130234) NADH dehydrogenase subunit F [Lamprocapnos spectabilis]
Length = 697
Score = 146 bits (364), Expect = 7e-34
Identities = 111/436 (25%), Positives = 209/436 (47%), Gaps = 37/436 (8%)
Query: 23 KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIG----P 78
K +++ P ++L++++ A ++ G I W +L G P
Sbjct: 25 KNLRRMWAFPSVLLLSIVMLFSADLAIQQI--NGSSIYQYIWSWTINHNFSLEFGYLIDP 82
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFNLFV 135
++ ++I V I ++S + + +Y + F + G++ + ++ +++
Sbjct: 83 LTSIMSILITTVGIIVLIYSDNYMFHD--QRYLIFFAYMSFSNASMLGLVTSSNLIQIYI 140
Query: 136 FMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLA 194
F E+ + +Y L + T AA A K V +G L+G LY TG+ L
Sbjct: 141 FWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGTLGLYWITGSFEFRDLF 200
Query: 195 ELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SAF 247
++ + +N + + AL+ G ++ FPL+ W P+A + P PI+ + +A
Sbjct: 201 KIVNNLIDNHGVNFLFLTLSAALLFLGAIAKSAQFPLHVWLPEAMEG-PTPISALIHAAT 259
Query: 248 VVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIG 307
+V AG++ +AR+L L V+ L+ ++ T+T++ AL Q D+KR +AYS++
Sbjct: 260 MVAAGIFLVARLLPLFAVI---PYVMNLISLIGTITLLLGATLALAQIDIKRSLAYSTMS 316
Query: 308 QIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--------YVGITLGGTE-LE 358
Q+G I LA +G+ A +FH++ HA KA++FLG G VG + ++ +
Sbjct: 317 QLGYIMLALGMGS---YHAALFHLITHAYSKALLFLGSGSIIHSMERIVGYSPDKSQNMA 373
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
GL K +P+T +++ +G +S G+P FWSK I+ + I+ AI+ F + +
Sbjct: 374 LMGGLTKYVPITKISVFLGTLSLCGIPPLACFWSKDEILNDSWLYSPIF-AIIACFTAGL 432
Query: 419 EAVYYFRLVHTMWFSG 434
Y FR ++ + F G
Sbjct: 433 TGFYMFR-IYLLTFEG 447
>emb|CAB64928.1| (AJ236252) NADH dehydrogenase subunit F [Decumaria barbara]
Length = 712
Score = 146 bits (364), Expect = 7e-34
Identities = 106/379 (27%), Positives = 187/379 (48%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S + + Y F + +T G++ + ++
Sbjct: 89 IDPLTSIMSILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFFSTSMFGLVTSSNLIQ 146
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 147 IYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFR 206
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L E+ T+ +N + V L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 207 DLFEIVTNLIYKNEVNLLFLTVCAVLLFAGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 265
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L +L L+ ++ +TV+ AL Q+D+KR +AYS
Sbjct: 266 AATMVAAGIFLVARLLPLFIVI---PYILNLISLIGIITVLLGATLALAQKDIKRSLAYS 322
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEKFE 361
++ Q+G + LA +G+ +FH++ HA KA++FLG G V T+ G +K +
Sbjct: 323 TMSQLGYMXLALGMGSYR---TALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQ 379
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL K +P+T + +G +S G+P FWSK I+ T I+ AI+
Sbjct: 380 NMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDTWLYSPIF-AIIACST 438
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F G
Sbjct: 439 AGLTAFYMFR-IYLLTFEG 456
>pir||T12165 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
japonica chloroplast (fragment)
>gi|2444396|gb|AAB71592.1| (AF020474) NADH
dehydrogenase-like protein [Gleditsia japonica]
>gi|2444398|gb|AAB71593.1| (AF020475) NADH
dehydrogenase-like protein [Gleditsia japonica]
Length = 699
Score = 146 bits (364), Expect = 7e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>gb|AAF79016.1| (L75934) NADH dehydrogenase F [Guzmania rhonhofiana]
Length = 691
Score = 146 bits (364), Expect = 7e-34
Identities = 103/379 (27%), Positives = 190/379 (49%), Gaps = 31/379 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S K + + Y F + T G++ + ++
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T AA A K V +G L+G+ Y TG+L
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFR 195
Query: 192 HLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
+L E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 196 YLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 254
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
A +V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS
Sbjct: 255 XATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYS 311
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE 361
++ Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 312 TMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQ 368
Query: 362 ------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F
Sbjct: 369 NMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSWLYSPIF-AVIAYFT 427
Query: 416 SMVEAVYYFRLVHTMWFSG 434
+ + A Y FR V+ + F G
Sbjct: 428 AGLTAFYMFR-VYLLTFDG 445
>pir||T12668 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
fendleri chloroplast (fragment)
>gi|1773301|gb|AAB41634.1| (U78895) NADH dehydrogenase
[Ceanothus fendleri]
Length = 707
Score = 146 bits (364), Expect = 7e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12671 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
integerrimus chloroplast (fragment)
>gi|1773303|gb|AAB41635.1| (U78896) NADH dehydrogenase
[Ceanothus integerrimus]
Length = 707
Score = 146 bits (364), Expect = 7e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||T13032 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
thyrsiflorus chloroplast (fragment)
>gi|1773307|gb|AAB41637.1| (U78898) NADH dehydrogenase
[Ceanothus thyrsiflorus]
Length = 707
Score = 146 bits (364), Expect = 7e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12163 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - honey locust
chloroplast (fragment) >gi|2444390|gb|AAB71589.1|
(AF020471) NADH dehydrogenase-like protein [Gleditsia
triacanthos] >gi|2444392|gb|AAB71590.1| (AF020472) NADH
dehydrogenase-like protein [Gleditsia aquatica]
Length = 699
Score = 146 bits (364), Expect = 7e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||T12164 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
japonica chloroplast (fragment)
>gi|2444394|gb|AAB71591.1| (AF020473) NADH
dehydrogenase-like protein [Gleditsia japonica]
Length = 699
Score = 146 bits (364), Expect = 7e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINNSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - maize
chloroplast
Length = 510
Score = 145 bits (363), Expect = 9e-34
Identities = 104/386 (26%), Positives = 178/386 (45%), Gaps = 31/386 (8%)
Query: 57 KPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP--IDKYAMLF 114
+PII +G N F +F +I + S + SV+ ++ I ++ +
Sbjct: 82 EPIISFSG--------NFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFV 133
Query: 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSF 173
L LG + D+ +FV +E ++ +Y L+ Y K + EA+MKY+++GG SS
Sbjct: 134 LTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSI 193
Query: 174 FLIGVALLYGATGTLNMAHLAELSTSINPIV---------AQVGLALVIFGLAVEAELFP 224
+ G + LYG +G EL +N ++ + L + GL + L P
Sbjct: 194 LVYGFSWLYGLSGGE-----IELQEIVNGLINTQMYNSPGISIALIFITVGLGFKLSLAP 248
Query: 225 LNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYL--LQKANGWSSVLRLVLIMATL 282
+ W PD Y+ +P P+ S A L RIL + +N W +L I+A L
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLSVTSKVAALALATRILDIPFYFSSNEWHLLLE---ILAIL 305
Query: 283 TVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLG-TQAGVDAGVFHMLNHAIVKAMM 341
++I L A+ Q +KRM+AYSSIGQIG + + +G + G + + +ML + +
Sbjct: 306 SMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 342 FLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
F + G+ G + + GL + P AL+L + +S G+P F+ K +
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGW 425
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLV 427
QAG + + L S++ YY +++
Sbjct: 426 QAGLYFLVSIGLLTSVLSIYYYLKII 451
>pir||T13036 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
velutinus chloroplast (fragment)
>gi|1773309|gb|AAB41638.1| (U78899) NADH dehydrogenase
[Ceanothus velutinus]
Length = 707
Score = 145 bits (363), Expect = 9e-34
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHISIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12162 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gymnocladus
chinensis chloroplast (fragment)
>gi|2444388|gb|AAB71588.1| (AF020470) NADH
dehydrogenase-like protein [Gymnocladus chinensis]
Length = 700
Score = 145 bits (363), Expect = 9e-34
Identities = 115/452 (25%), Positives = 218/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ +++ + I W
Sbjct: 8 MLIGVGLL--LFPTATKNIRRMWAFPSVLLLSIVMIFSVDLSIHQINKSS--IYQYVWSW 63
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
++L G ++ ++I V + ++S + + + Y F + T
Sbjct: 64 TINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDNYMSHD--EGYLRFFAYMSFFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+L +L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 182 LGLYWITGSLEFRNLFEIFKNLIDNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ + ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNGIALIGIITVVLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 298 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P F FWSK I+ +
Sbjct: 355 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILNDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIACSTAGLTAFYMFR-IYLLVFEG 444
>gb|AAD52740.1|AF123682_1 (AF123682) NADH dehydrogenase [Hemimeris sabulosa]
Length = 703
Score = 145 bits (363), Expect = 9e-34
Identities = 114/452 (25%), Positives = 217/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ +P ++L++++ ++ ++ I W
Sbjct: 12 MLIGVGLL--LFPTATKNIRRMWALPSILLLSIVMIFSTNLSILQINSSS--IYQYIWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLMDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFSYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPTAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFQDLFEIFNNLISNNEVNSLFVTLCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T ++ +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVFMGGLTKHVPITKISFLVGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF03771.1| (AF147712) NADH dehydrogenase subunit [Hydrostachys multifida]
Length = 704
Score = 145 bits (363), Expect = 9e-34
Identities = 107/377 (28%), Positives = 179/377 (47%), Gaps = 34/377 (9%)
Query: 72 INLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATG 128
+ I P ++ +++I V + ++S K + + Y F + L +T G++ +
Sbjct: 77 LGFLIDPLTSIMLILITTVGILVLIYSDKYMSHD--QGYLRFFSYMSLFSTSMLGLVTSS 134
Query: 129 DIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGT 187
++ ++VF E+ + +Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 135 NLLQIYVFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDFGLLLGILGFYWLTGS 194
Query: 188 LNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
L E+ T IN + + LV G ++ FPL+ W PDA + P PI+
Sbjct: 195 FEFRSLVEIITKLISQNEINLLFLTICAVLVFAGSVAKSAQFPLHVWLPDAMEG-PTPIS 253
Query: 242 VMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
+ +A +V AG++ +AR+ L +L+L+ LTV AL Q+D+KR
Sbjct: 254 ALIHAATMVAAGIFLVARLFPLFIII---PHILKLIAFTGILTVFLGATLALAQKDIKRG 310
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLG-----------VGYVG 349
+AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG VGY
Sbjct: 311 LAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSVIHSMEPIVGYAP 367
Query: 350 ITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPA 409
T + GL K +T + IG +S G+P FWSK I+ + I+ A
Sbjct: 368 ST--SQNMAFMGGLKKHSKITKIVFLIGTLSLCGIPPLACFWSKDEILNDSWLYSPIF-A 424
Query: 410 ILVLFASMVEAVYYFRL 426
I+ F + + A Y F +
Sbjct: 425 IIASFTAGLTAFYMFXI 441
>gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit FpoL [Methanosarcina mazei]
Length = 672
Score = 145 bits (363), Expect = 9e-34
Identities = 127/496 (25%), Positives = 232/496 (46%), Gaps = 56/496 (11%)
Query: 16 AFFVPVLKRIKQSLI------MPYLILITLIQTGIAGWVFYEVYTTG-----KPIIIMAG 64
AF +P+L + ++ MP I I A +V T G + +I +
Sbjct: 10 AFLIPLLPALAFAITFFFGRKMPSGGAIVPILAIAASFVISFAITLGLLANPEEVISQSY 69
Query: 65 GWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPID-KYAMLFLLLMLGATG 123
W + I + I P AA+ + +++ VS + +++V + + +Y L
Sbjct: 70 SWFAVLNIGILIDPLAAVMLSMVSFVSLLIHIYAVSYMSHDAGKARYFAETALFTAAMLS 129
Query: 124 MIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLIGVALLY 182
++ + +I LFV E+ + +Y L + + AA A+ K + IG FL G+ +L
Sbjct: 130 LVLSDNILQLFVSWELVGLCSYLLIGFWFEKPSAAAAAKKAFLTTRIGDVMFLTGIIVLT 189
Query: 183 GATGTLN---------------MAHLAELST-SINPIVAQVG----LALVIFGLAV-EAE 221
++ +++ EL+ IN + ++ + L+ FG AV ++
Sbjct: 190 SDLLKVSGGFQDGVYLLRFDEIFSYIPELAALQINILGFEISHLTIITLLFFGGAVGKSG 249
Query: 222 LFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMAT 281
FPL+ W PDA + ++ +A +V AG+Y +AR + A L +V
Sbjct: 250 QFPLHVWLPDAMEGPTTVSALIHAATMVTAGVYLVARTFPMFIAA---PDSLMVVAYFGG 306
Query: 282 LTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDA---GVFHMLNHAIVK 338
T +FA + D+KR++A+S+I Q+G + L LGT G++A +FH++NHA K
Sbjct: 307 FTALFAGTMGIVMNDLKRVLAFSTISQLGYMMLGLGLGTAIGLEAVGISLFHLINHAFFK 366
Query: 339 AMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTV--GVPLFNVFWSKFRI 396
A++FL G V +G ++ + G+GK MP+TA +TI A++ G+P ++ S F
Sbjct: 367 ALLFLCAGSVIHAVGTQDMRELGGVGKVMPITAATMTIAALALAGFGIPGTSIGTSGFMS 426
Query: 397 IVATLQAGFIW--------PAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGW----- 443
++A +++ P + + A+++ ++Y FRL+ M F+G G
Sbjct: 427 KDPIIEAAYLFGEHSSNWIPYVFSILAALLTSIYIFRLIF-MTFTGKPRSNYHGHESPAI 485
Query: 444 IVIFLLLLAVLVVAIG 459
+ I L +LA+ +A G
Sbjct: 486 MTIPLSILAIFALAFG 501
>sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432483|pir||T14202 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Rhizopus stolonifer mitochondrion
>gi|604924|gb|AAA99062.1| (U17011) NADH dehydrogenase,
subunit 5 [Rhizopus stolonifer]
Length = 654
Score = 145 bits (362), Expect = 1e-33
Identities = 123/469 (26%), Positives = 228/469 (48%), Gaps = 24/469 (5%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWV-FYEVYTTGKPIIIMAGGW 66
++ LPL+SA L R + +L+ T + V FYEV G P+ I W
Sbjct: 5 ILTLPLLSATVAGFLGRKIGKTGSHLITCSSLVLTALLALVAFYEVGLCGSPVSIKLMSW 64
Query: 67 RPP----VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
V +L + +VS + ++S + +P ++ +L +
Sbjct: 65 IDSEFLLVSWGFIYDSLTVSMLLPVLIVSALVHIYSTNYMSEDPHNQRFFAYLSMFTFFM 124
Query: 123 GMIATGDIFN-LFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVAL 180
M+ TGD + +F+ E I++Y L + T +A +A++K +V+ +G F IG+
Sbjct: 125 LMLVTGDNYLVMFIGWEGVGISSYLLINFWFTRLQANKAAIKALVMNRVGDWGFSIGLWA 184
Query: 181 LYGATGTLNMAHLAELSTSINP-IVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHP 239
++ G L+ + L+ IN ++ + + L++ + A++ L+ W PDA + P P
Sbjct: 185 IFWTFGNLDFTTVFSLAPFINEELITIISICLLVAAMGKSAQI-GLHTWLPDAMEG-PTP 242
Query: 240 ITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
++ + +A +V AG+Y + R +L+ S+ L L+ + LT FA + L Q D+K
Sbjct: 243 VSALIHAATMVTAGVYLLLRSSPILEFG---STALILITWVGALTAFFAATTGLLQNDLK 299
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGG-TEL 357
R+IAYS+ Q+GL+ L L + + +FH++NHA KA++FL G V + +L
Sbjct: 300 RVIAYSTCSQLGLLFLVCGL---SQYNVALFHLVNHAWFKALLFLSAGSVIHAMNDEQDL 356
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASM 417
KF GL + +P T + IG++S + +P F+SK +I+ + + LV + +
Sbjct: 357 RKFGGLSRLLPFTYSMMVIGSLSLMALPFLTGFYSK-DLIIELAYGHYSFSGNLVYWLAS 415
Query: 418 VEAV----YYFRLVHTMWFS-GSGERVKEGWIVIFLLLLAVLVVAIGIY 461
V AV Y R ++ + +G ++ I L++A+ +V + ++
Sbjct: 416 VAAVFTAMYSIRSLYLTFLGYPNGPKINYNNIHEAPLIMAIPLVVLAVF 464
>gb|AAF78989.1| (L75906) NADH dehydrogenase F [Hohenbergia disjuncta]
Length = 691
Score = 145 bits (362), Expect = 1e-33
Identities = 112/436 (25%), Positives = 208/436 (47%), Gaps = 37/436 (8%)
Query: 23 KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIG----P 78
K I++ P ++L+++ A ++ G I W +L G P
Sbjct: 23 KNIRRMWAFPSVLLLSIAMAFSANLSIQQI--NGNLIYQYLWSWTINNDFSLEFGYLIDP 80
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFNLFV 135
++ ++I V + ++S K + + Y F + T G++ + ++ +++
Sbjct: 81 LTSIMSILITTVGIMVLIYSDKYMYHD--QGYLRFFAYMSFFNTSMLGLVTSSNLIQIYI 138
Query: 136 FMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLA 194
F E+ + +Y L + T AA A K V +G L+G+ Y TG+L L
Sbjct: 139 FWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSLEFRDLL 198
Query: 195 ELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SAF 247
E++ + +N + A + +L+ G ++ FPL+ W PDA + P PI+ + +A
Sbjct: 199 EITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAMEG-PTPISALIHAAT 257
Query: 248 VVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIG 307
+V AG++ +AR+L L ++ + ++ +T++ AL QRD+K+ +AYS++
Sbjct: 258 MVAAGIFLVARLLPLFIVI---PYIMNFISLIGVITLLLGATLALAQRDIKKSLAYSTMS 314
Query: 308 QIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLG---GTELEKFE--- 361
Q+G I LA +G+ A +FH++ HA KA++FLG G + ++ G +K +
Sbjct: 315 QLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPDKSQNMV 371
Query: 362 ---GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMV 418
GL + +P+T +G +S G+P FWSK I+ + I+ A++ F +
Sbjct: 372 LMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIF-AVIASFTAGF 430
Query: 419 EAVYYFRLVHTMWFSG 434
A Y FR V+ + F G
Sbjct: 431 TAFYMFR-VYLLTFDG 445
>pir||T12658 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
americanus chloroplast (fragment)
>gi|1773297|gb|AAB41632.1| (U78893) NADH dehydrogenase
[Ceanothus americanus]
Length = 707
Score = 145 bits (361), Expect = 2e-33
Identities = 113/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+K+ +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKKGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12664 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
cordulatus chloroplast (fragment)
>gi|1773299|gb|AAB41633.1| (U78894) NADH dehydrogenase
[Ceanothus cordulatus]
Length = 707
Score = 145 bits (361), Expect = 2e-33
Identities = 114/452 (25%), Positives = 214/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPAKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||T12759 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
sanguineus chloroplast (fragment)
>gi|1773305|gb|AAB41636.1| (U78897) NADH dehydrogenase
[Ceanothus sanguineus]
Length = 707
Score = 145 bits (361), Expect = 2e-33
Identities = 113/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F +K +++ + P ++L++++ A ++ + I + W
Sbjct: 12 MLIGVGLL--LFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSS--IYLSVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P +L +++I V + ++S + + Y F + T
Sbjct: 68 TINNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFSNT 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ ++ F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+L L E+ + ++ + + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSLEFRDLFEIVNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +T+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PFIMNLIAFIGIITLFLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+K+ +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKKGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T A +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILSDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 448
>pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - barley
chloroplast
Length = 510
Score = 145 bits (361), Expect = 2e-33
Identities = 103/386 (26%), Positives = 178/386 (45%), Gaps = 31/386 (8%)
Query: 57 KPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP--IDKYAMLF 114
+PII +G N F +F +I + S + SV+ ++ I ++ +
Sbjct: 82 EPIISFSG--------NFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFV 133
Query: 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSF 173
L LG + D+ +FV +E ++ +Y L+ Y K + EA+MKY+++GG SS
Sbjct: 134 LTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSI 193
Query: 174 FLIGVALLYGATGTLNMAHLAELSTSINPIV---------AQVGLALVIFGLAVEAELFP 224
+ G + LYG +G EL +N ++ + L + GL + L P
Sbjct: 194 LVYGFSWLYGLSGGE-----IELQEIVNGLINTQMYNSPGISIALIFITVGLGFKLSLAP 248
Query: 225 LNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYL--LQKANGWSSVLRLVLIMATL 282
+ W PD Y+ +P P+ S A + RIL + +N W +L I+A L
Sbjct: 249 FHQWTPDVYEGSPTPVVAFLSVTSKVAAIALATRILDIPFYFSSNEWHLLLE---ILAIL 305
Query: 283 TVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLG-TQAGVDAGVFHMLNHAIVKAMM 341
++I L A+ Q +KRM+AYSSIGQIG + + +G + G + + +ML + +
Sbjct: 306 SMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGT 365
Query: 342 FLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
F + G+ G + + GL + P AL+L + +S G+P F+ K +
Sbjct: 366 FACIVLFGLRTGTDNIRDYAGLYMKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGW 425
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLV 427
QAG + + L S++ YY +++
Sbjct: 426 QAGLYFLVSIGLLTSVLSIYYYLKII 451
>gb|AAD26214.1| (AF117397) NADH dehydrogenase [Chionachne koenigii]
Length = 698
Score = 145 bits (361), Expect = 2e-33
Identities = 118/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + FF+P K +++ P ++L+++ ++ G I
Sbjct: 1 LLPLPVIMSMGFGLFFIPTATKNLRRIWAFPSILLLSIAMVFSLYLSIQQI--NGSSIYQ 58
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 59 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 116
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 117 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 176
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN + + L+ G ++ FPL+
Sbjct: 177 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLFTTLCAFLLFLGAVAKSAQFPLHV 236
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 237 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 292
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 293 GATLALAQRDIKRSLAYSTMSQLGYMMLAIGIGS---YQAALFHLITHAYSKALLFLGSG 349
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 350 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 409
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 410 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 444
>gb|AAF08115.1| (AF130153) NADH dehydrogenase subunit F [Phyla incisa]
Length = 746
Score = 145 bits (361), Expect = 2e-33
Identities = 116/453 (25%), Positives = 214/453 (46%), Gaps = 39/453 (8%)
Query: 6 SLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGG 65
S+LI + L+ F K I++ P +++++++ ++ ++ I
Sbjct: 19 SMLIGVGLL--LFPTATKNIRRMWAFPSILVLSMVMIFSTNLSILQINSSS--IYQYVWS 74
Query: 66 WRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGA 121
W +L G P ++ +++I V + ++S + + Y F L
Sbjct: 75 WTLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYLSFFT 132
Query: 122 T---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIG 177
T G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G
Sbjct: 133 TSMFGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLG 192
Query: 178 VALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
+ Y TG+ L E+ + +N + AL+ G ++ FPL+ W PD
Sbjct: 193 ILGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAALLFAGAIAKSAQFPLHIWLPD 252
Query: 232 AYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A + P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+
Sbjct: 253 AMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGIITVLLGATL 308
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV-- 348
AL Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 309 ALAQKDIKRALAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIH 365
Query: 349 -GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
TL G +K + GL K +P+T + +G +S G+P FWSK I+ T
Sbjct: 366 SMETLVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDTW 425
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 426 LYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 456
>gb|AAF22411.1|AF047804_1 (AF047804) NADH dehydrogenase [Romanzoffia californica]
Length = 696
Score = 145 bits (361), Expect = 2e-33
Identities = 103/383 (26%), Positives = 187/383 (47%), Gaps = 31/383 (8%)
Query: 72 INLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATG 128
+ +I P + ++I V + ++S + + +Y F + +T G++ +
Sbjct: 77 LGYFIDPLTCIMSILITTVGILVLIYSDNYMSHD--QEYLRFFAYMSFFSTSMLGLVTSS 134
Query: 129 DIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGT 187
++ +++F E+ + +Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 135 NLIQIYIFWELVGMCSYLLIGFWFTRSVAANACQKAFVTNRVGDFGLLLGILGFYWITGS 194
Query: 188 LNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
L E+ + +N + A + L+ G ++ FPL+ W PDA + P PI+
Sbjct: 195 FEFRDLLEVFNNLISTNEVNFLFATLCAVLLFAGAVAKSAQFPLHVWLPDAMEG-PTPIS 253
Query: 242 VMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRM 300
+ +A +V AG++ +AR+L L ++ + ++ +TV AL Q+D+KR
Sbjct: 254 ALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFIALIGIITVFLGATLALAQKDIKRG 310
Query: 301 IAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTEL 357
+AYS++ Q+G + LA +G+ +FH++ HA KA++FLG G V T+ G
Sbjct: 311 LAYSTMSQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSVIHSMETVVGYSP 367
Query: 358 EKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAIL 411
+K + GL K +P+T A +G +S G+P FWSK I+ + I+ AI+
Sbjct: 368 DKSQNMVFMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILNDSWLYSLIF-AII 426
Query: 412 VLFASMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F G
Sbjct: 427 AWATAGLTAFYMFR-IYLLTFEG 448
>sp|Q32880|NU5C_POAPR NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|7520422|pir||T13655 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Kentucky bluegrass chloroplast
(fragment) >gi|755849|gb|AAA64698.1| (U21980) NADH
dehydrogenase F [Poa pratensis]
Length = 702
Score = 144 bits (360), Expect = 2e-33
Identities = 119/463 (25%), Positives = 220/463 (46%), Gaps = 55/463 (11%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTT-----G 56
L+ LP+I + FF+P K +++ P ++ +++ + Y V+ + G
Sbjct: 5 LLPLPVIMSMGFGLFFIPTATKNLRRIWAFPSVLFLSIA-------IVYSVHLSIQQING 57
Query: 57 KPIIIMAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAM 112
I W +L G P ++ +++I V + ++S + + + Y
Sbjct: 58 SSIYQYLWSWTVNNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHD--EGYLR 115
Query: 113 LFLLLMLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGG 168
F+ + T G++ + ++ ++ F E+ + +Y L + T AA A K V
Sbjct: 116 FFVYISFFTTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNR 175
Query: 169 IGSSFFLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAEL 222
+G L+G+ + TG+L L +++ + IN ++ + L+ G ++
Sbjct: 176 VGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQ 235
Query: 223 FPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMAT 281
FPL+ W PDA + P PI+ + +A +V AG++ +AR+ L ++ L+ ++ T
Sbjct: 236 FPLHVWLPDAMEG-PTPISALIHAATMVAAGIFLLARLFPLFISI---PLIMTLISLVGT 291
Query: 282 LTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMM 341
+T+ AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++
Sbjct: 292 ITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALL 348
Query: 342 FLGVGYVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWS 392
FLG G V + L G +K + GL K +P+T G +S G+P FWS
Sbjct: 349 FLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPLACFWS 408
Query: 393 KFRIIV-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
K I+ + L + F I+ F + + A Y FR ++ + F G
Sbjct: 409 KDEILSNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLSFDG 448
>gb|AAG26157.1| (AF123809) NADH dehydrogenase subunit F [Lactoris fernandeziana]
Length = 443
Score = 144 bits (360), Expect = 2e-33
Identities = 112/418 (26%), Positives = 201/418 (47%), Gaps = 41/418 (9%)
Query: 6 SLLIALPLISAFFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG 64
++LI L L+ VP+ K +++ ++L++++ A V ++ G I
Sbjct: 23 TMLIGLGLL---LVPITTKNLRRMWAFSSVLLLSIVMLFSANLVIQQI--NGSSIYQYLW 77
Query: 65 GWRPPVGINLYIGPFA----ALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLL 116
W +L G F ++ +++I V + ++S + + Y F
Sbjct: 78 SWTINNDFSLEFGYFVDSLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFSYMSFFNA 137
Query: 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFL 175
MLG ++ + ++ +++F E+ + +Y L + T AA A K V +G L
Sbjct: 138 SMLG---LVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRLGDFGLL 194
Query: 176 IGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWA 229
+G+ LY TG+ L E+S + +N + A V +L+ G ++ FPL+ W
Sbjct: 195 LGILGLYWITGSFEFRDLFEISNNLIHNNGVNSLFATVCASLLFLGAVAKSAQFPLHVWL 254
Query: 230 PDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAE 288
PDA + P PI+ + +A +V AG++ +AR+ L ++ L+ ++ +TV
Sbjct: 255 PDAMEG-PTPISALIHAATMVAAGIFLVARLFPLFTVI---PYIMNLISLIGIITVFLGA 310
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV 348
AL Q+D+KR +AYS++ Q+G I LA +G+ A +FH++ HA KA++FLG G +
Sbjct: 311 TLALAQKDIKRSLAYSTMSQLGYIMLAPGIGSYR---AALFHLITHAYSKALLFLGSGSI 367
Query: 349 GITLG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
++ G EK + GL K +P+T +G +S G+P FWSK I+
Sbjct: 368 IHSMEPIVGYSPEKSQNMVFMGGLTKYVPITKKTFLLGTLSLCGIPPLACFWSKDEIL 425
>gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU2C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
>gi|66151|pir||DELVN2 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
chloroplast >gi|453589|emb|CAA28058.1| (X04465) ndh2
[Marchantia polymorpha]
Length = 501
Score = 144 bits (359), Expect = 3e-33
Identities = 111/414 (26%), Positives = 182/414 (43%), Gaps = 29/414 (7%)
Query: 26 KQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIGPFAALFVL 85
K+ I Y I +T + I +F Y T PII G ++ F +F
Sbjct: 37 KKDTIWLYFISLTSLLISIIILLFQ--YKTD-PIISFLGSFQTD--------SFNRIFQS 85
Query: 86 IIAVVSFITAVFSVKAVKVEP--IDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAIT 143
I S + S++ +K I ++ + L +G + D+ +FV +E ++
Sbjct: 86 FIVFCSILCIPLSIEYIKCAKMAIPEFLIFILTATVGGMFLCGANDLVTIFVSLECLSLC 145
Query: 144 AYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGATG-------TLNMAHLAE 195
+Y L Y K + EA++KY+++GG SS G + LYG +G N AE
Sbjct: 146 SYLLCGYTKRDIRSNEAAIKYLLIGGTSSSILAYGFSWLYGLSGGETNIQKITNGLLNAE 205
Query: 196 LSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYA 255
S +A + ++ GLA + L P + W PD Y+ +P P+ S AGL
Sbjct: 206 TYNSSGTFIAFI---CILVGLAFKLSLVPFHQWTPDIYEGSPTPVVAFLSVTSKIAGLAL 262
Query: 256 MARILYLLQK--ANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIA 313
RIL +L N W L I+A L++I L A+ Q +KRM+AYSSI QIG I
Sbjct: 263 ATRILNILFSFSPNEWKIFLE---ILAILSMILGNLVAITQTSMKRMLAYSSISQIGYIL 319
Query: 314 LAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALA 373
+ G G + ++ + + F + + G + + GL + PL + +
Sbjct: 320 IGLITGDLKGYTSMTIYVFFYIFMNLGTFACIILYSLRTGTDNIRDYAGLYIKDPLLSFS 379
Query: 374 LTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLV 427
LT+ +S G+P F+ K + Q+GF + L S++ YY +++
Sbjct: 380 LTLCLLSLGGLPPLTGFFGKLYLFWCGWQSGFYLLVFIALITSVISLYYYLKII 433
>gi|11467252 NADH dehydrogenase ND5 [Zea mays] >gi|1171820|sp|P46620|NU5C_MAIZE
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|1363571|pir||S58612 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - maize chloroplast
>gi|902281|emb|CAA60346.1| (X86563) NADH dehydrogenase
ND5 [Zea mays]
Length = 738
Score = 144 bits (359), Expect = 3e-33
Identities = 118/458 (25%), Positives = 218/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 13 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 70
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 71 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 128
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 129 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 188
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 189 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 248
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L W ++ + ++ T+T+
Sbjct: 249 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISLP-W--IMSFISLIGTITLFL 304
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 305 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 361
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 362 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 421
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 422 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 456
>pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis
>gi|1934817|emb|CAB07942.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635656|emb|CAB15149.1| (Z99120) similar
to NADH dehydrogenase [Bacillus subtilis]
Length = 774
Score = 144 bits (359), Expect = 3e-33
Identities = 109/398 (27%), Positives = 187/398 (46%), Gaps = 48/398 (12%)
Query: 66 WRPPVGIN--LYIGPFAALFVLIIAVVSFITAVFSVKAVKVE-----PIDKYAMLFLLLM 118
W P +GIN +YI LF L+I + + ++S+ + E P Y ++F+ M
Sbjct: 37 WIPSLGINFTVYIDGLGLLFALLITGIGSLVTLYSIFYLSKEKEQLGPFYVYLLMFMGAM 96
Query: 119 LGATGMIATGDIFNLFVFMEITAITAYALTAY----NKTGEAAEASMKYIVLGGIGSSFF 174
LG ++ ++ L++F E+T+++++ L Y K+ A S+ V GG+
Sbjct: 97 LG---VVLVDNVMVLYMFWELTSLSSFLLIGYWYKREKSRYGAAKSLLITVSGGL---CM 150
Query: 175 LIGVALLYGATGTLN---MAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
L G LLY T + + M H +L + + L++ G ++ FP W PD
Sbjct: 151 LGGFILLYLITDSFSIREMVHQVQLIAGHELFIP--AMILILLGAFTKSAQFPFYIWLPD 208
Query: 232 AYQAAPHPITV-MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A +A P P++ + SA +VKAG+Y +AR + + W ++ LV T+++
Sbjct: 209 AMEA-PTPVSAYLHSATMVKAGIYVIARFSPIFAFSAQWFWIVSLV---GLFTMVWGSFH 264
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQA-----------GVDAGVFHMLNHAIVKA 339
A++Q D+K ++A+S++ Q+G+I + A A +FH++NHA K
Sbjct: 265 AVKQTDLKSILAFSTVSQLGMIISMLGVSAAALHYGHTEYYTVAAMAAIFHLINHATFKG 324
Query: 340 MMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVA 399
+F+ VG + G ++ K GL MP+T IG S G+P FN F SK +
Sbjct: 325 SLFMAVGIIDHETGTRDIRKLGGLMAIMPITFTISLIGTFSMAGLPPFNGFLSKEMFFTS 384
Query: 400 TLQAGFI-------WPAILVLFA---SMVEAVYYFRLV 427
L+ W + LFA S+ +Y +L+
Sbjct: 385 MLRVTHFDLFNVQTWGVLFPLFAWIGSVFTFIYSMKLL 422
>gb|AAF08114.1| (AF130152) NADH dehydrogenase subunit F [Lantana horrida]
Length = 737
Score = 144 bits (359), Expect = 3e-33
Identities = 115/453 (25%), Positives = 215/453 (47%), Gaps = 39/453 (8%)
Query: 6 SLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGG 65
S+LI + L+ F K +++ P +++++++ ++ ++ I
Sbjct: 10 SMLIGVGLL--LFPTATKNLRRMWAFPSILVLSMVMIFSTNLSILQINSSS--IYQYVWS 65
Query: 66 WRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGA 121
W +L G P ++ +++I V + ++S + + Y F L +
Sbjct: 66 WTLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMVHD--QGYLRFFAYLSFFS 123
Query: 122 T---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIG 177
T G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G
Sbjct: 124 TSMFGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLG 183
Query: 178 VALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
+ Y TG+ L E+ + +N + AL+ G ++ FPL+ W PD
Sbjct: 184 ILGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAALLFAGAIAKSAQFPLHIWLPD 243
Query: 232 AYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A + P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+
Sbjct: 244 AMEG-PTPISALIHTATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGIITVLLGATL 299
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV-- 348
AL Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 300 ALAQKDIKRALAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIH 356
Query: 349 -GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
TL G +K + GL K +P+T + +G +S G+P FWSK I+ T
Sbjct: 357 SMETLVGYSPDKSQNMVLMGGLRKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDTW 416
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 417 LYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 447
>emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related protein
[Thermoplasma acidophilum]
Length = 503
Score = 144 bits (359), Expect = 3e-33
Identities = 104/405 (25%), Positives = 195/405 (47%), Gaps = 44/405 (10%)
Query: 109 KYAMLF----LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYI 164
KY +F +L+ +G G++ + D ++F E+ + Y + S+K+
Sbjct: 107 KYGSVFFGLEMLVEVGLIGLLISRDFLFFYIFWELVLVPVYFMIGRYGRDNKDSISLKFF 166
Query: 165 VLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIVA--------QVGLALV--IF 214
V IGS F L+ + LY + + ++L + I P+++ ++G L +F
Sbjct: 167 VYTHIGSVFILLSIFTLY----SYSFSYLGYYTFEIGPLMSIVHSLPVFELGFVLFGFLF 222
Query: 215 GLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANG-WSSVL 273
G V+ FP+++W PD+Y +AP+P TV+ + + G Y + IL A W VL
Sbjct: 223 GFLVKMPSFPIHSWLPDSYYSAPYPATVILAGAISMMGGYGLFGILMEAYSAIPLW--VL 280
Query: 274 RLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAF--SLGTQAGVD------ 325
++ + +++I+ L+A+ QR++K+M+A++S +G + L+F S+ +GVD
Sbjct: 281 YILEALGIMSIIYFALTAMFQRNIKKMMAFASASAMGFVTLSFAASIIESSGVDYSVKYI 340
Query: 326 ---AGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTV 382
G+F ++ H ++ A++F + Y+ + G+ + P+ A IG ++++
Sbjct: 341 EAAGGMFQIVAHGLIMALVFSALYYINRNTKTDSVYGLGGIYREAPMLASFSLIGFLASL 400
Query: 383 GVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGE----- 437
G+P F F +F I+V QA W V+F ++ A Y+ + E
Sbjct: 401 GLPGFAGFIGEFSIVVGVFQA-ISWYIFFVIFGMIITASYHIWTAQRSLYGPYNENLGFI 459
Query: 438 ---RVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIVKRAGSDIFAV 479
RV E I++FL+L+ L G+YP + + S+IF V
Sbjct: 460 RDVRVSEFLILVFLVLVIFL---FGVYPNLIFHNLVNYTSNIFGV 501
>sp|Q33066|NU5C_SORBI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|755851|gb|AAA64699.1| (U21981) NADH dehydrogenase F
[Sorghum bicolor] >gi|4588864|gb|AAD26241.1| (AF117424)
NADH dehydrogenase [Sorghum halepense]
Length = 702
Score = 143 bits (358), Expect = 3e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escherichia coli]
Length = 608
Score = 143 bits (358), Expect = 3e-33
Identities = 113/458 (24%), Positives = 210/458 (45%), Gaps = 41/458 (8%)
Query: 34 LILITLIQTGIAGWV------FYEVYTTGKPIIIMAG-----GWRPPVGINLYIGPFAAL 82
L + Q ++GW+ +YT ++ G G V ++ I P A+
Sbjct: 20 LAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAI 79
Query: 83 FVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAI 142
+++ + + +++++ + + + +LM A + ++ V EI A+
Sbjct: 80 WLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMAEIMAL 139
Query: 143 TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINP 202
A LT+ +K G+ + LG +G+ I LL+ GTL++ L ++ P
Sbjct: 140 CAVFLTSNSKEGKL------WFALGRLGTLLLAIACWLLWQRYGTLDL-RLLDMRMQQLP 192
Query: 203 IVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYL 262
+ + + L L + G + A + PL+ W P A+ A P +FS V+K GL + + L
Sbjct: 193 LGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLL 251
Query: 263 LQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQA 322
A W + LVL M +T L AL + +++R++AY ++ IG+I L G
Sbjct: 252 GGNAXLWWGIALLVLGM--ITAFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTG 309
Query: 323 -----------GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTA 371
G+ G++H+LNH++ K+++FLG G V G ++EK G+GK+MP+ +
Sbjct: 310 IALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 369
Query: 372 LALTIGAVSTVGVPLFNVFWSKFRIIVATLQ--------AGFIWPAILV-LFASMVEAVY 422
+A+ +G ++ +P N F ++ I + + A + P + V L + AV
Sbjct: 370 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVM 429
Query: 423 YFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGI 460
V+ + F G+ + LL++V VVA+ I
Sbjct: 430 CMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAI 467
>gb|AAD26215.1| (AF117398) NADH dehydrogenase [Chrysopogon fulvus]
Length = 702
Score = 143 bits (358), Expect = 3e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAD26216.1| (AF117399) NADH dehydrogenase [Chrysopogon gryllus]
Length = 702
Score = 143 bits (358), Expect = 3e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAD26234.1| (AF117417) NADH dehydrogenase [Miscanthus japonicus]
Length = 702
Score = 143 bits (358), Expect = 3e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGXMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAD26248.1| (AF117431) NADH dehydrogenase [Sorghum timorense]
Length = 702
Score = 143 bits (358), Expect = 3e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli
>gi|41682|emb|CAA35548.1| (X17506) hycC [Escherichia
coli] >gi|1093496|prf||2104213C hycC gene [Escherichia
coli]
Length = 608
Score = 143 bits (357), Expect = 4e-33
Identities = 113/458 (24%), Positives = 210/458 (45%), Gaps = 41/458 (8%)
Query: 34 LILITLIQTGIAGWV------FYEVYTTGKPIIIMAG-----GWRPPVGINLYIGPFAAL 82
L + Q ++GW+ +YT ++ G G V ++ I P A+
Sbjct: 20 LAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAI 79
Query: 83 FVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAI 142
+++ + + +++++ + + + +LM A + ++ V EI A+
Sbjct: 80 WLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMAEIMAL 139
Query: 143 TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINP 202
A LT+ +K G+ + LG +G+ I LL+ GTL++ L ++ P
Sbjct: 140 CAVFLTSNSKEGKL------WFALGRLGTLLLAIACWLLWQRYGTLDL-RLLDMRMQQLP 192
Query: 203 IVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYL 262
+ + + L L + G + A + PL+ W P A+ A P +FS V+K GL + + L
Sbjct: 193 LGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASTPAAALFSTVVMKIGLLGILTLSLL 251
Query: 263 LQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQA 322
A W + LVL M +T L AL + +++R++AY ++ IG+I L G
Sbjct: 252 GGNAPLWWGIALLVLGM--ITAFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTG 309
Query: 323 -----------GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTA 371
G+ G++H+LNH++ K+++FLG G V G ++EK G+GK+MP+ +
Sbjct: 310 IALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 369
Query: 372 LALTIGAVSTVGVPLFNVFWSKFRIIVATLQ--------AGFIWPAILV-LFASMVEAVY 422
+A+ +G ++ +P N F ++ I + + A + P + V L + AV
Sbjct: 370 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVM 429
Query: 423 YFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGI 460
V+ + F G+ + LL++V VVA+ I
Sbjct: 430 CMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAI 467
>sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|538864|pir||A40588
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechococcus sp. (PCC 7002) >gi|154516|gb|AAA27311.1|
(M99378) NADH dehydrogenase subunit 5 [Synechococcus
PCC7002]
Length = 664
Score = 143 bits (357), Expect = 4e-33
Identities = 127/475 (26%), Positives = 224/475 (46%), Gaps = 49/475 (10%)
Query: 3 QVASLLIALPLISAFFVPV----LKRIKQSLIMPYLILI-TLIQTGIA---GWVFYEVYT 54
Q A L+ LPL+ A + + L + L Y + + +LI T +A G ++ ++
Sbjct: 6 QYAWLIPVLPLLGAMVIGIGLISLNKFTNKLRQLYAVFVLSLIGTSMALSFGLLWSQIQ- 64
Query: 55 TGKPIIIMAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEP---- 106
G W +L +G +AL +I+ V+ + +++ + +P
Sbjct: 65 -GHEAFTYTLEWAAAGDFHLQMGYTVDHLSALMSVIVTTVALLVMIYTDGYMAHDPGYVR 123
Query: 107 IDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIV 165
Y +F MLG ++ + ++ +++F E+ + +Y L + AA+A K V
Sbjct: 124 FYAYLSIFSSSMLG---LVFSPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFV 180
Query: 166 LGGIGSSFFLIGVALLYGATGTLNMAHLAE-----LSTS-INPIVAQVGLALVIFGLAVE 219
+G L+G+ LY ATG+ + + +ST I+ ++A V LV G +
Sbjct: 181 TNRVGDFGLLLGMLGLYWATGSFEFDLMGDRLMDLVSTGQISSLLAIVFAVLVFLGPVAK 240
Query: 220 AELFPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLI 278
+ FPL+ W PDA + P PI+ + +A +V AG++ +AR+ + + + ++
Sbjct: 241 SAQFPLHVWLPDAMEG-PTPISALIHAATMVAAGVFLVARMYPVFEPI---PEAMNVIAW 296
Query: 279 MATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVK 338
T AL Q D+K+ +AYS++ Q+G + +A +G G AG+FH++ HA K
Sbjct: 297 TGATTAFLGATIALTQNDIKKGLAYSTMSQLGYMVMAMGIG---GYTAGLFHLMTHAYFK 353
Query: 339 AMMFLGVGYV--GI-------TLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNV 389
AM+FLG G V G+ + ++ GL K MP+TA IG ++ G+P F
Sbjct: 354 AMLFLGSGSVIHGMEEVVGHNAVLAQDMRLMGGLRKYMPITATTFLIGTLAICGIPPFAG 413
Query: 390 FWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMW---FSGSGERVKE 441
FWSK I+ +A + I A M A Y FR+ + F G+ ++++E
Sbjct: 414 FWSKDEILGLAFEANPVLWFIGWATAGMT-AFYMFRMYFLTFEGEFRGTDQQLQE 467
>pir||T13661 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Paulownia
tomentosa chloroplast (fragment)
>gi|703252|gb|AAA84571.1| (L36406) NADH dehydrogenase
subunit [Paulownia tomentosa]
Length = 700
Score = 143 bits (357), Expect = 4e-33
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI L L+ F K +++ P ++L++++ ++ + I W
Sbjct: 12 MLIGLGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSIQQINRSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + +T
Sbjct: 68 TLENDFSLEFGYLIDPLTSIMLMLITTVGIMVIIYSDNYMTHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEILNNLIHNNEVNSLFVTLCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V G++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAEGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG---YV 348
L Q+D+KR +AYS+ Q+G + LA +G+ + +FH++ HA KA++FLG G Y
Sbjct: 302 LAQKDIKRGLAYSTXSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIYS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE-3
COMPONENT C) >gi|7446809|pir||G65052 hydrogenase (EC
1.18.99.1) 3 chain 3 - Escherichia coli
>gi|2367154|gb|AAC75765.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12]
Length = 608
Score = 143 bits (357), Expect = 4e-33
Identities = 113/458 (24%), Positives = 210/458 (45%), Gaps = 41/458 (8%)
Query: 34 LILITLIQTGIAGWV------FYEVYTTGKPIIIMAG-----GWRPPVGINLYIGPFAAL 82
L + Q ++GW+ +YT ++ G G V ++ I P A+
Sbjct: 20 LAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAI 79
Query: 83 FVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAI 142
+++ + + +++++ + + + +LM A + ++ V EI A+
Sbjct: 80 WLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMAEIMAL 139
Query: 143 TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINP 202
A LT+ +K G+ + LG +G+ I LL+ GTL++ L ++ P
Sbjct: 140 CAVFLTSNSKEGKL------WFALGRLGTLLLAIACWLLWQRYGTLDL-RLLDMRMQQLP 192
Query: 203 IVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYL 262
+ + + L L + G + A + PL+ W P A+ A P +FS V+K GL + + L
Sbjct: 193 LGSDIWL-LGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLL 251
Query: 263 LQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQA 322
A W + LVL M +T L AL + +++R++AY ++ IG+I L G
Sbjct: 252 GGNAPLWWGIALLVLGM--ITAFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTG 309
Query: 323 -----------GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTA 371
G+ G++H+LNH++ K+++FLG G V G ++EK G+GK+MP+ +
Sbjct: 310 IALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 369
Query: 372 LALTIGAVSTVGVPLFNVFWSKFRIIVATLQ--------AGFIWPAILV-LFASMVEAVY 422
+A+ +G ++ +P N F ++ I + + A + P + V L + AV
Sbjct: 370 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVM 429
Query: 423 YFRLVHTMWFSGSGERVKEGWIVIFLLLLAVLVVAIGI 460
V+ + F G+ + LL++V VVA+ I
Sbjct: 430 CMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAI 467
>gb|AAF08116.1| (AF130154) NADH dehydrogenase subunit F [Aloysia gratissima]
Length = 746
Score = 143 bits (357), Expect = 4e-33
Identities = 114/453 (25%), Positives = 215/453 (47%), Gaps = 39/453 (8%)
Query: 6 SLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGG 65
S+LI + L+ F +K ++ P +++++++ ++ ++ I
Sbjct: 19 SMLIGVGLL--LFPTAIKNFRRMWAFPSILVLSMVMLFSTNLSILQINSSS--IYQYVWS 74
Query: 66 WRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGA 121
W +L G P ++ +++I V + ++S + + Y F L +
Sbjct: 75 WTLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYLSFFS 132
Query: 122 T---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIG 177
T G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G
Sbjct: 133 TSMFGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLG 192
Query: 178 VALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
+ Y TG+ L E+ + +N + AL+ G ++ FPL+ W PD
Sbjct: 193 ILGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAALLFAGAIAKSAQFPLHIWLPD 252
Query: 232 AYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A + P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+
Sbjct: 253 AMEG-PTPISALILAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGIITVLLGATL 308
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV-- 348
AL Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 309 ALAQKDIKRALAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIH 365
Query: 349 -GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
TL G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 366 SMETLVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSW 425
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 426 LYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 456
>emb|CAB65450.1| (AJ236271) NADH dehydrogenase subunit F [Sarracenia purpurea]
Length = 702
Score = 143 bits (357), Expect = 4e-33
Identities = 115/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ A ++ + I W
Sbjct: 15 VLIGVGLL--LFPTATKNLRRMWAFPSVLLLSIVMIFSADLSIQQINSNS--IYQYVWSW 70
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + T
Sbjct: 71 TINNDFSLEFGHLIDPLTSIMLILITTVGIMVLIYSDNYMSHD--QGYLRFFAYMSFFNT 128
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG +G+
Sbjct: 129 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLFLGI 188
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
LY TG+ L E+ + +N + + L+ G ++ FPL+ W PDA
Sbjct: 189 LGLYWITGSFEFRDLFEIFNNLSYNNELNLLFVTLCAFLLFSGAVAKSAQFPLHVWLPDA 248
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ +++ +TV+ A
Sbjct: 249 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLISIITVLLGATLA 304
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G + +
Sbjct: 305 LAQKDIKRSLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 361
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G +K + GL K +P+T A +G +S G+P FWSK I+ T
Sbjct: 362 MEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPPLACFWSKDEILNDTWL 421
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 422 YSPIF-AIIACSTAGLTAFYMFR-IYLLTFEG 451
>sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >gi|282215|pir||S28891
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechocystis sp. (strain PCC 6803)
>gi|47602|emb|CAA46289.1| (X65170) NADH dehydrogenase
subunit D [Synechocystis PCC6803]
>gi|1001415|dbj|BAA10037.1| (D63999) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 525
Score = 143 bits (356), Expect = 6e-33
Identities = 113/475 (23%), Positives = 224/475 (46%), Gaps = 25/475 (5%)
Query: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKP--IIIMAGG 65
+I LP+++A F+P++ + Y + + L+ + + FY + +P ++ +
Sbjct: 10 IILLPIVAALFIPIIPDKDGKTVRWYSLAVGLVDFALIVYAFYSGFDLSEPGLQLVESYT 69
Query: 66 WRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT-GM 124
W P + + +G LII + FIT + ++ A V K +LLM G +
Sbjct: 70 WLPQIDLKWSVGADGLSMPLII-LTGFITTLATMAAWPVTLKPKLFYFLMLLMYGGQIAV 128
Query: 125 IATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLI-GVAL-LY 182
A DI F+ E+ + Y + + + A+ K+I+ GS F L+ G+ L Y
Sbjct: 129 FAVQDILLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSLFILLAGLTLAFY 188
Query: 183 GATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV 242
G T +M+ +A +N + L+ +G V+ +FPL+ W PDA+ A P +
Sbjct: 189 GDVNTFDMSAIAAKDIPVNLQLLLYAGFLIAYG--VKLPIFPLHTWLPDAHGEATAPAHM 246
Query: 243 MFSAFVVKAGLYAMARI-LYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
+ + ++K G YA+ R+ + +L A+ + +++I+ + +I+A ++ QR++KR I
Sbjct: 247 LLAGILLKMGGYALLRMNVGMLPDAH--AVFAPVLVILGVVNIIYAAFTSFAQRNLKRKI 304
Query: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFE 361
AYSSI +G + + + T G+ + M++H ++ A +F VG L++
Sbjct: 305 AYSSISHMGFVLIGLASFTDLGMSGAMLQMISHGLIGASLFFMVGATYDRTHTLMLDEMG 364
Query: 362 GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIV--ATLQA-GFIWPAILVLFAS-- 416
G+G++M T +++++ +P + F ++ + V AT A ++ I+V+
Sbjct: 365 GIGQKMKKGFAMWTACSLASLALPGMSGFVAELMVFVGFATSDAYNLVFRTIVVVLMGVG 424
Query: 417 -MVEAVYYFRLVHTMWFSGSGERV--------KEGWIVIFLLLLAVLVVAIGIYP 462
++ +Y ++ M + E + E V + L V ++ IG YP
Sbjct: 425 VILTPIYLLSMLREMLYGPENEELVNHTNLVDVEPREVFIIGCLLVPIIGIGFYP 479
>gb|AAA64199.1| (U21995) NADH dehydrogenase F [Molinia caerulea]
Length = 702
Score = 143 bits (356), Expect = 6e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAA64201.1| (U21997) NADH dehydrogenase F [Phragmites australis]
Length = 706
Score = 143 bits (356), Expect = 6e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 7 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 64
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 65 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 122
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 123 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 182
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 183 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 242
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 243 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 298
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 299 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 355
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 356 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEIL 415
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 416 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 450
>gb|AAD26217.1| (AF117400) NADH dehydrogenase [Cleistachne sorghoides]
Length = 699
Score = 143 bits (356), Expect = 6e-33
Identities = 116/458 (25%), Positives = 216/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 1 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 58
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 59 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 116
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 117 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDXG 176
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 177 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 236
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 237 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 292
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR + YS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 293 GATLALAQRDIKRSLXYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 349
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 350 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 409
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 410 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 444
>gb|AAD26238.1| (AF117421) NADH dehydrogenase [Sorghastrum nutans]
Length = 702
Score = 143 bits (356), Expect = 6e-33
Identities = 117/458 (25%), Positives = 216/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ L+ G ++ FPL+
Sbjct: 181 LLLGILGFFXITGSLEFRDLFKIANNWIPNNGINSLLTTSCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>gb|AAF08110.1| (AF130148) NADH dehydrogenase subunit F [Callicarpa japonica]
Length = 748
Score = 143 bits (356), Expect = 6e-33
Identities = 113/441 (25%), Positives = 207/441 (46%), Gaps = 37/441 (8%)
Query: 18 FVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIG 77
F K I++ P ++L++++ ++ ++ I W +L G
Sbjct: 29 FPTATKNIRRMWAFPSILLLSIVMIFSTNLAIQQINSSS--IYQYVWSWTLDNDFSLEFG 86
Query: 78 ----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDI 130
P ++ ++I V + ++S + + Y F + T G++ + ++
Sbjct: 87 YLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFTTSMLGLVTSSNL 144
Query: 131 FNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
+++F E+ + +Y L + T AA A K V +G FL+G+ Y TG+
Sbjct: 145 IQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGFLLGILGFYWITGSFE 204
Query: 190 MAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVM 243
L E+ + ++ + AL+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 205 FRDLFEILKNLIYNNEVSFPFVTLCAALLFAGAVAKSAQFPLHVWLPDAMEG-PTPISAL 263
Query: 244 F-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
+A +V AG++ +AR+L L ++ L+ ++ +TV+ AL Q+D+KR +A
Sbjct: 264 IHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIMTVLLGATLALAQKDIKRGLA 320
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEK 359
YS++ Q+G + LA +G+ +FH++ HA KA++FLG G V T+ G +K
Sbjct: 321 YSTMSQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDK 377
Query: 360 FE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL 413
+ GL K +P+T +G +S G+P FWSK II + I+ AI+ L
Sbjct: 378 SQNMVLMGGLTKHVPITKTTFLLGTLSLCGIPPLACFWSKDEIINDSWLYSPIF-AIIAL 436
Query: 414 FASMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F G
Sbjct: 437 ATAGLTAFYMFR-IYLLTFEG 456
>gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia olyriformis]
Length = 705
Score = 143 bits (356), Expect = 6e-33
Identities = 116/458 (25%), Positives = 216/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ + P ++ +++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWVFPSVLFLSIAMVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 M---LGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
+ G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNISMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN + + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLFTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PFIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVFMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR V+ + F G
Sbjct: 414 SNSRLYSPFF--GIIASFTAGLTAFYMFR-VYLLTFDG 448
>gb|AAF27243.1|AF111764_1 (AF111764) NADH dehydrogenase [Corchorus olitorius]
Length = 711
Score = 143 bits (356), Expect = 6e-33
Identities = 114/452 (25%), Positives = 214/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K +++ P ++L++++ ++ + I W
Sbjct: 20 ILIGMGLL--FFPTATKNLRRMWTFPNILLLSIVMIFSVDLAIQQINRSS--IYQYVWSW 75
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ +++I V + ++S + + Y F + L T
Sbjct: 76 TINNDFSFEFGYFIDSLTSIMLILITTVGILVLIYSDNYMSHD--QGYLRFFAYMSLFNT 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + + +L+ G ++ FP + W PDA
Sbjct: 194 IGFYWITGSFEFQDLFEIFNNLIYNNEVNFLFVTLCASLLFAGAVAKSAQFPFHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLLGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG----- 346
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 366
Query: 347 ---YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 367 MEAIVGYSPXKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 YSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 456
>gb|AAF27249.1|AF111771_1 (AF111771) NADH dehydrogenase [Pseudocorchorus sp. Randrianasolo
519]
Length = 702
Score = 143 bits (356), Expect = 6e-33
Identities = 114/452 (25%), Positives = 214/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K +++ P ++L++++ ++ + I W
Sbjct: 20 ILIGMGLL--FFPTATKNLRRMWTFPNILLLSIVMIFSVDLAIQQINRSS--IYQYVWSW 75
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ +++I V + ++S + + Y F + L T
Sbjct: 76 TINNDFSFEFGYFIDSLTSIMLILITTVGILVLIYSDNYMSHD--QGYLRFFAYMSLFNT 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + + +L+ G ++ FP + W PDA
Sbjct: 194 IGFYWITGSFEFQDLFEIFNNLIYNNEVNFLFVTLCASLLFAGAVAKSAQFPFHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLLGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG----- 346
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 366
Query: 347 ---YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 367 MEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 YSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 456
>gb|AAF73308.1| (AF188850) NADH dehydrogenase subunit B [Zamia furfuracea]
Length = 470
Score = 143 bits (356), Expect = 6e-33
Identities = 109/418 (26%), Positives = 187/418 (44%), Gaps = 27/418 (6%)
Query: 29 LIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGI----NLYIGPFAALFV 84
LI+ +I +T Q F + + I ++ WR I N F +F
Sbjct: 24 LILLLMIDLTSDQKDTPWLYFISLTSLVMSITVLLFRWREEPTISFLGNFQTSNFNKIFR 83
Query: 85 LIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATG--DIFNLFVFMEITAI 142
+I + S + SV+ +K + L LL GM+ G D+ +FV +E ++
Sbjct: 84 FLILLCSTLCIPLSVEYIKCAEMAITEFLLFLLTAALGGMVLCGANDLVTIFVALECFSL 143
Query: 143 TAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSIN 201
+Y L+ Y K + EA+MKY+++GG SS + G + LYG +G EL +N
Sbjct: 144 CSYLLSGYTKRDVXSNEATMKYLLMGGASSSILVYGFSWLYGLSGGE-----IELQEVVN 198
Query: 202 PIVAQ---------VGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAG 252
++ + L + G+ + L P + W PD Y+ +P P+ S A
Sbjct: 199 GLINTQMYNSPGILIALISITVGIGFKLSLVPFHQWTPDVYEGSPTPVVAFLSVTSKVAA 258
Query: 253 LYAMARILYLLQ--KANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIG 310
RI ++ +N W +L I+A L++I L A+ Q +KRM+AYSS+GQIG
Sbjct: 259 SALATRIFDIIFYFSSNEWHLLLE---ILAILSMILGNLIAITQTSMKRMLAYSSMGQIG 315
Query: 311 LIALAFSLG-TQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPL 369
I + G ++ G + + +ML + + F + G+ G + + GL + P
Sbjct: 316 YIIIGIIAGDSKNGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPF 375
Query: 370 TALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLV 427
+A +L + +S G+P F+ K + QAG + F S++ YY +++
Sbjct: 376 SAFSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYLLVSIGPFMSVISIYYYLKII 433
>gb|AAF90041.2| (AF238055) NADH dehydrogenase subunit F [Hydrastis canadensis]
Length = 410
Score = 143 bits (356), Expect = 6e-33
Identities = 104/400 (26%), Positives = 190/400 (47%), Gaps = 37/400 (9%)
Query: 23 KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIG----P 78
K +++ P ++L++++ A ++ G PI W +L G P
Sbjct: 5 KNLRRIWAFPSVLLLSIVMLFSADLSIQQI--NGSPIYQYVWSWTINNDFSLDFGYLIDP 62
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLMLGATGMIATGDIFNLF 134
++ ++I V + ++S + + Y F MLG ++ + ++ ++
Sbjct: 63 LTSIMSILITTVGIMVLIYSDNYMSHDQGYLQFFAYMSFFNASMLG---LVTSSNLIQIY 119
Query: 135 VFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHL 193
+F E+ + +Y L + T AA A K V +G +G+ LY TG+ L
Sbjct: 120 IFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLFLGILGLYWITGSFEFRDL 179
Query: 194 AELSTSI------NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SA 246
E+ + N + + +L+ G ++ FPL+ W PDA + P PI+ + +A
Sbjct: 180 FEIVNDLIDNNGANSLFLTLCASLLFVGAIAKSAQFPLHVWLPDAMEG-PTPISALIHAA 238
Query: 247 FVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSI 306
+V AG++ +AR+L L ++ ++ ++ +T++ AL QRD+KR +AYS++
Sbjct: 239 TMVAAGIFLVARLLPLFTTI---PYIMYIISLVGIITILLGATLALAQRDIKRSLAYSTM 295
Query: 307 GQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEKFE-- 361
Q+G I LA +G+ A +FH++ HA KA++FLG G + T+ G +K +
Sbjct: 296 SQLGYIMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPDKSQNM 352
Query: 362 ----GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
GL K +P+T A +G +S G+P FWSK I+
Sbjct: 353 ALMGGLTKYVPITKTAFLLGTLSLCGIPPLACFWSKDEIL 392
>emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 568
Score = 143 bits (356), Expect = 6e-33
Identities = 108/411 (26%), Positives = 200/411 (48%), Gaps = 21/411 (5%)
Query: 68 PPVGINLYIGPFAALFVLIIAVVSFITAVFSV---KAVKVEPIDKYAMLFLLLMLGATGM 124
P + + L +F + +++ + AV+S+ + + ++ F + A G
Sbjct: 67 PGIDVALRADALGMVFATVSSLLWIVAAVYSIGYMRHLHEHAQTRFFACFATSLAAAVGG 126
Query: 125 IATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIV-LGGIGSSFFLIGVALLYG 183
++F L +F E+ ++ Y L +++ E S KY+V L G S L +AL Y
Sbjct: 127 AFAANLFTLVIFYEVLSLVTYPLVYHHEDEEGWRGSRKYLVYLMGASKSVLLAALALTYH 186
Query: 184 ATGTLNMAHLAELS-TSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV 242
G+L+ L+ + + + V +FG A +A + P++AW P A AP P++
Sbjct: 187 IAGSLDFVRGGLLTGANASATLLTVVYFCYLFGFA-KAAVMPMHAWLPAA-MVAPTPVSA 244
Query: 243 MFSAF-VVKAGLYAMARILYLLQKANGWSSVLRLVLIMAT-----LTVIFAELSALRQRD 296
+ A VVK G++ + R+++ G S+V L L AT T++ A + AL + D
Sbjct: 245 LLHAVAVVKMGVFCVLRVIF---HVFGVSTVGELGLGAATAYLVSFTILMASVYALTRDD 301
Query: 297 VKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE 356
+K +AYS++ Q+ I L L + + G+ H+ HA K +F G + G
Sbjct: 302 LKARLAYSTVSQLSYIVLGAVLLSPLAMVGGIIHIAAHAFSKITLFFCAGSIYCASGKRN 361
Query: 357 LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFAS 416
+ G+G+R+P T A + ++S +G+P F SK+ + +++AG + ++L +S
Sbjct: 362 ISDMAGIGRRLPWTMGAFFVASLSMIGIPPTAGFVSKWYLAEGSVEAGQMAFLAVLLASS 421
Query: 417 MVEAVYYFRLVHTMWFSG----SGERVKE-GWIVIFLLLLAVLVVAIGIYP 462
++ A Y+ + +T +F S V+E + I L+ A+L V +GI+P
Sbjct: 422 VLNAAYFLPVSYTAFFEAETKESRAPVREIPLVAIPLVATAILSVLMGIFP 472
>gi|11466844 NADH dehydrogenase ND5 [Oryza sativa]
>gi|128769|sp|P12129|NU5C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|66190|pir||DERZN5 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - rice chloroplast
>gi|12047|emb|CAA33950.1| (X15901) NADH dehydrogenase
ND5 [Oryza sativa] >gi|226667|prf||1603356CU NADH
dehydrogenase ND5 [Oryza sativa]
Length = 734
Score = 142 bits (355), Expect = 8e-33
Identities = 119/458 (25%), Positives = 216/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F VP K +++ P ++L+++ ++ G I
Sbjct: 13 LLPLPVIMSMGFGLFLVPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 70
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 71 YLWSWTVNNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 128
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 129 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 188
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 189 LLLGILGFFWITGSLEFRDLFKIANNWIPNNEINSLLTILCAFLLFLGAVAKSAQFPLHV 248
Query: 228 WAPDAYQAAPHPITVMFSAF-VVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + A +V AG++ +AR+L L ++ + ++ TLT+
Sbjct: 249 WLPDAMEG-PTPISALIHATTMVAAGIFLIARLLPLFISL---PLIMSFISLIGTLTLFL 304
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 305 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 361
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 362 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIPPLACFWSKDEIL 421
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 422 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 456
>gb|AAA64202.1| (U21998) NADH dehydrogenase F [Arundo donax]
Length = 703
Score = 142 bits (355), Expect = 8e-33
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGLGLFLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLSFDG 448
>pir||T12298 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N -
Pseudomonas syringae >gi|2920664|gb|AAC04582.1|
(AF048756) NADH dehydrogenase I chain N [Pseudomonas
syringae]
Length = 489
Score = 142 bits (355), Expect = 8e-33
Identities = 107/423 (25%), Positives = 201/423 (47%), Gaps = 28/423 (6%)
Query: 74 LYIGPFAALFVLIIAVVSFI------TAVFSVKAVKVEPIDK-YAMLFLLLMLGATGMIA 126
L+I FA L++ II + T ++ + I K + +L LL G +++
Sbjct: 67 LHIDNFACLYMAIILASTLACVTMGGTPIWVTARPGIRAIAKSFTLLILLAAAGGLVLVS 126
Query: 127 TGDIFNLFVFMEITAITAYALTAY---NKTGEAAEASMKYIVLGGIGSSFFLIGVALLYG 183
+ LF+ +E+ ++ Y L AY NK + E +KY+VL GS+F L G+ALLY
Sbjct: 127 AQHLAGLFIGLELLSVPVYGLVAYAFFNK--RSLEGGIKYMVLSAAGSAFLLFGMALLYA 184
Query: 184 ATGTLNMAHLAEL--STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
G+L+ + + +T + +A +GL +++ GLA + L P + W PD Y+ AP P+
Sbjct: 185 EAGSLSFDGIGKAIAATGMPSPIASLGLGMMVVGLAFKLSLVPFHLWTPDVYEGAPAPVA 244
Query: 242 VMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
F A K ++A+ L+ + A + ++ ++A +++ L AL Q ++KR++
Sbjct: 245 A-FLATASKVAVFAVLVRLFQISPAASSGVLHDVMAVIAVASILVGNLLALTQTNLKRLL 303
Query: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELE--- 358
YSSI + +A V+A ++ + + F + + + G + +
Sbjct: 304 GYSSIAHFCYLMIALVASKGMAVEAIGVYLATYVLTSLGSFGVITMMCLPYSGRDADAMF 363
Query: 359 KFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAI-LVLFASM 417
++ GL R P +T+ +S G+PL S + T+ +W I ++ S
Sbjct: 364 EYRGLFWRRPYLTAVMTLMMLSLAGIPL--TAGSSASLYDRTVSIRKLWWLIGALVIGSA 421
Query: 418 VEAVYYFRLVHTMWFSGS---GERVKEGWI---VIFLLL-LAVLVVAIGIYPTPAWEIVK 470
+ Y R++ TM+ + W+ V+++LL +A+L +G+ P P +++V
Sbjct: 422 IGVFYNLRVMVTMYLVDNKLLRHDAAINWVSAQVVWMLLPVAILTFVLGVNPQPLFDLVV 481
Query: 471 RAG 473
AG
Sbjct: 482 NAG 484
>gb|AAA64702.1| (U21984) NADH dehydrogenase F [Thysanolaena maxima]
Length = 710
Score = 142 bits (354), Expect = 1e-32
Identities = 117/458 (25%), Positives = 217/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSIGFGLFLIPTATKNLRRIWAFPSVLLLSIAMVYSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKITNNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PFIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRNLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSG 353
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLSFDG 448
>gb|AAA64704.1| (U21986) NADH dehydrogenase F [Panicum virgatum]
Length = 702
Score = 142 bits (354), Expect = 1e-32
Identities = 116/458 (25%), Positives = 216/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 5 LLPLPVIMSMGFGLFLIPTATKNLRRIWAFPSILLLSIALVFSVHLSIQQI--NGSSIYQ 62
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 63 YLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 120
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 121 SFFNTAMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 228 WAPDAYQAAPHPITVMFSAF-VVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + A +V AG++ +AR+ L ++ + ++ T+T+
Sbjct: 241 WLPDAMEG-PTPISALIHATTMVAAGIFLLARLFPLFISL---PLIMSFISLVGTITLFL 296
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR +AYS++ Q+G + LA +G+ +A +FH++ HA KA++FLG G
Sbjct: 297 GATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YEAALFHLITHAYSKALLFLGSG 353
Query: 347 YV---GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V +L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 354 SVIHSMESLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 413
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 414 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 448
>pir||T12226 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - common olive
chloroplast (fragment) >gi|2605769|gb|AAB84416.1|
(AF027288) NADH dehydrogenase [Olea europaea]
Length = 731
Score = 142 bits (354), Expect = 1e-32
Identities = 113/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F V K +++ P ++L++++ ++ ++ I W
Sbjct: 20 MLIGVGLL--LFPTVTKNLRRMWAFPSILLLSIVMIFSMNLSIQQINSSC--IYQYVWSW 75
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 76 TINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 194 LGFYWITGSFEFRDLFEILNNLIYNNKVNSSFVTLCAALLFTGAVAKSAQFPLHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISFIGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G +
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSIIHS 366
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T ++ +G +S G+P FWSK I+ +
Sbjct: 367 METIVGYSPDKSQNMALMGGLTKHVPITRISFLLGTISLCGIPPLACFWSKDEILNDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 YSPIF-AIIAWTTAGLTAFYMFR-IYLLTFEG 456
>pir||T12296 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Smithiantha
cinnabarina chloroplast (fragment)
>gi|2791794|gb|AAB96932.1| (AF040152) NADH dehydrogenase
[Smithiantha cinnabarina]
Length = 701
Score = 142 bits (354), Expect = 1e-32
Identities = 112/454 (24%), Positives = 212/454 (46%), Gaps = 43/454 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LIA+ L+ F K ++ +P ++L++++ + ++ I W
Sbjct: 12 MLIAVGLL--LFPTATKDFRRMWALPSILLLSIVMVFSTNLSIQLINSSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TXDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAYD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F+E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMFGLVTSSNLIQIYIFLELVGMCSYILIGFWFTRPVAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PD
Sbjct: 186 LGFYWITGSFEFQDLFEILNDLIYNNEVNFPFVTLCAALLFAGAVAKSAQFPLHVWLPDG 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIAI---PYIMNLISVIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K E GL K +P+T ++ G +S G+P FWSK I L
Sbjct: 359 METIVGYSPDKSENMVLMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEI----LN 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRL--VHTMWFSG 434
+++ I + AS + F + ++ + F G
Sbjct: 415 DSWLYSPIFAIIASATAGLTAFDMFRIYLLTFEG 448
>pir||T12562 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crescentia
portoricensis chloroplast (fragment)
>gi|3851731|gb|AAC72418.1| (AF102627) NADH dehydrogenase
subunit [Crescentia portoricensis]
Length = 698
Score = 142 bits (354), Expect = 1e-32
Identities = 113/452 (25%), Positives = 214/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFATNLSIQQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPFAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIVNNLISNNEVNSPFVILCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +T++ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGLITILLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>pir||T12563 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Cybistax
donnell-smithii chloroplast (fragment)
>gi|3851733|gb|AAC72419.1| (AF102628) NADH dehydrogenase
subunit [Cybistax donnell-smithii]
Length = 698
Score = 142 bits (354), Expect = 1e-32
Identities = 114/452 (25%), Positives = 214/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFATNLSIQQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TINNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLISNNEVNSPFVILCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF08111.1| (AF130149) NADH dehydrogenase subunit F [Vitex agnus-castus]
Length = 748
Score = 142 bits (354), Expect = 1e-32
Identities = 112/441 (25%), Positives = 208/441 (46%), Gaps = 37/441 (8%)
Query: 18 FVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWRPPVGINLYIG 77
F K I++ P ++L++++ ++ ++ I W +L G
Sbjct: 29 FPTATKNIRRMWAFPSILLLSIVMIFSTNLAIQQINSSS--IYQYVWSWTLDNDFSLEFG 86
Query: 78 ----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDI 130
P ++ ++I V + ++S + + Y F + +T G++ + ++
Sbjct: 87 YLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFSTSMLGLVTSSNL 144
Query: 131 FNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
+++F E+ + +Y L + T AA A K V +G FL+G+ Y TG+
Sbjct: 145 IQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGFLLGILGFYWITGSFE 204
Query: 190 MAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVM 243
L E+ + ++ + AL+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 205 FRDLFEILKNLIYNNEVSFPFVTLCAALLFAGAVAKSAQFPLHVWLPDAMEG-PTPISAL 263
Query: 244 F-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
+A +V AG++ +AR+L L ++ L+ ++ +T++ AL Q+D+KR +A
Sbjct: 264 IHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITLLLGATLALAQKDIKRGLA 320
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEK 359
YS++ Q+G + LA +G+ +FH++ HA KA++FLG G V T+ G +K
Sbjct: 321 YSTMSQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDK 377
Query: 360 FE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL 413
+ GL K +P+T +G +S G+P FWSK II + I+ AI+ L
Sbjct: 378 SQNMVLMGGLTKHVPITKTTFLLGTLSLCGIPPLACFWSKDEIINDSWLYSPIF-AIIAL 436
Query: 414 FASMVEAVYYFRLVHTMWFSG 434
+ + A Y FR ++ + F G
Sbjct: 437 ATAGLTAFYMFR-IYLLTFEG 456
>gb|AAF08125.1| (AF130163) NADH dehydrogenase subunit F [Olea europaea]
Length = 738
Score = 142 bits (354), Expect = 1e-32
Identities = 113/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F V K +++ P ++L++++ ++ ++ I W
Sbjct: 20 MLIGVGLL--LFPTVTKNLRRMWAFPSILLLSIVMIFSMNLSIQQINSSC--IYQYVWSW 75
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 76 TINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 194 LGFYWITGSFEFRDLFEILNNLIYNNKVNSSFVTLCAALLFTGAVAKSAQFPLHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISFIGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G +
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSIIHS 366
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T ++ +G +S G+P FWSK I+ +
Sbjct: 367 METIVGYSPDKSQNMALMGGLTKHVPITRISFLLGTISLCGIPPLACFWSKDEILNDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 YSPIF-AIIAWTTAGLTAFYMFR-IYLLTFEG 456
>pir||T13668 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Rhaphithamnus spinosus chloroplast (fragment)
>gi|703267|gb|AAA91089.1| (L36409) NADH dehydrogenase
subunit [Rhaphithamnus spinosus]
Length = 700
Score = 142 bits (354), Expect = 1e-32
Identities = 115/454 (25%), Positives = 214/454 (46%), Gaps = 41/454 (9%)
Query: 6 SLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGG 65
S+LI + L+ F K +++ P ++L++++ ++ ++ I
Sbjct: 11 SMLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSILQINSSS--IYQYGWS 66
Query: 66 WRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLL 117
W +L G P ++ ++I V + ++S + + Y F+
Sbjct: 67 WTLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHDQGYLRFFAYLSFFITS 126
Query: 118 MLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLI 176
MLG ++ + ++ +++F E+ + +Y L + T AA A K V +G L+
Sbjct: 127 MLG---LVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFALLL 183
Query: 177 GVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
G+ Y TG+ L E+ + +N + AL+ G ++ FPL+ W P
Sbjct: 184 GILGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAALLFAGAVAKSAQFPLHVWLP 243
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+
Sbjct: 244 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGIITVLLGAT 299
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV- 348
AL Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 300 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVI 356
Query: 349 --GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
T+ G K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 357 HSMETIVGYSPYKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDS 416
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ A+ + A Y FR ++ + F G
Sbjct: 417 WLYSPIF-AIIAWAAAGLTAFYMFR-IYLLTFEG 448
>gb|AAF27246.1|AF111768_1 (AF111768) NADH dehydrogenase [Triumfetta semitriloba]
Length = 725
Score = 142 bits (354), Expect = 1e-32
Identities = 113/445 (25%), Positives = 209/445 (46%), Gaps = 40/445 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K +++ P ++L++++ ++ + I W
Sbjct: 13 ILIGMGLL--FFPTATKNLRRMWTFPNILLLSIVMIFSVDLAIQQINXSS--IYQYVWSW 68
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ +++I V + ++S + + Y F + L T
Sbjct: 69 TINNDFSFEFGYFIDSLTSIMLILITTVGILVLIYSDNYMAHD--QGYLRFFAYMSLFNT 126
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 127 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGI 186
Query: 179 ALLYGATGTLNMAHLAEL--------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
Y TG+ L E+ + +N + + +L+ G ++ FP + W P
Sbjct: 187 MGFYWITGSFEFQDLFEIFNNLIYNKNNEVNLLFVALCASLLFAGAVAKSAQFPFHVWLP 246
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ LTV+
Sbjct: 247 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIXI---PYIMNLISLLGILTVLLGAT 302
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--- 346
AL Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 303 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSII 359
Query: 347 -----YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 360 HSMEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKNEILSDS 419
Query: 401 LQAGFIWPAILVLFASMVEAVYYFR 425
I+ AI+ + + A Y FR
Sbjct: 420 WLYSPIF-AIIAWCTAGLTAFYMFR 443
>pir||T12564 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Cydista
aequinoctialis chloroplast (fragment)
>gi|3851735|gb|AAC72420.1| (AF102629) NADH dehydrogenase
subunit [Cydista aequinoctialis]
Length = 698
Score = 141 bits (353), Expect = 1e-32
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K +++ P ++L++++ ++ T+ I W
Sbjct: 12 MLIGVGLL--FFPTATKNLRRMWAFPSILLLSIVMIFATNLSIQQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLVQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + L+ G A ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLISNNEVNCPFVTLCAVLLFAGAAAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V G++ +AR+L L ++ + ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAXGIFLVARLLPLFIVI---PYIMNFISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SAXFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLRKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>pir||T14241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
dermatophytic fungus (Trichophyton rubrum) mitochondrion
>gi|3947739|emb|CAA77185.1| (Y18476) NADH dehydrogenase
subunit 5 [Trichophyton rubrum]
Length = 653
Score = 141 bits (353), Expect = 1e-32
Identities = 115/432 (26%), Positives = 220/432 (50%), Gaps = 31/432 (7%)
Query: 7 LLIALPL----ISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIM 62
++I LPL IS FF + LI I+IT T +A + F+EV P+ I
Sbjct: 4 VIIFLPLLGSIISGFFGRKIGVQGAQLITSSFIIIT---TMLAIFNFFEVGYNNIPLEIN 60
Query: 63 AGGWRPPVGINL----YIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK----YAMLF 114
W IN+ Y ++ + +VS + ++S+ + +P ++ Y LF
Sbjct: 61 LFRWIDSESINILWGFYFDSLTVSMLIPVLIVSSLVHIYSIGYMSHDPHNQRFFSYLSLF 120
Query: 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSF 173
+M+ ++ + +F+ +E + +Y L + T AA ++S+ + +G F
Sbjct: 121 TFMMII---LVTANNYLLMFLGVEGVGVCSYLLVNFWFTRIAANQSSISAFLTNRVGDCF 177
Query: 174 FLIGVALLYGATGTLNMAHLAELSTSINP-IVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
IG+ ++ + G L+ + + L+ N + +G+ L+I +A +++ L+ W P A
Sbjct: 178 LTIGMFIIIWSFGNLDYSTVFSLAPYFNQEFITLIGICLLIGAMAKSSQI-GLHVWLPQA 236
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P P++ + +A +V AG+Y + R L++ + S+VL L L + +T IF+ +
Sbjct: 237 MEG-PTPVSALIHAATMVTAGVYLLMRSSPLIEYS---STVLILCLWLGAITTIFSSIIG 292
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+K++IAYS++ Q+G++ +A L + + +FH++NHA KA++FLG G V +
Sbjct: 293 LFQQDIKKVIAYSTMSQLGMMVIAIGL---SSYNLALFHLVNHAFYKALLFLGAGAVIHS 349
Query: 352 LG-GTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAI 410
+ + K+ GL +PL + I ++S V +P + F+SK I+ + F +
Sbjct: 350 VSDNQDFRKYGGLKPFLPLAYSIMLIASLSLVAIPFMSGFYSK-DFILESAYGQFYISST 408
Query: 411 LVLFASMVEAVY 422
LV F + + A++
Sbjct: 409 LVYFIATIGAMF 420
>gb|AAD26212.1| (AF117395) NADH dehydrogenase [Bothriochloa bladhii]
Length = 700
Score = 141 bits (353), Expect = 1e-32
Identities = 116/458 (25%), Positives = 214/458 (46%), Gaps = 45/458 (9%)
Query: 8 LIALPLISA-----FFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIII 61
L+ LP+I + F +P K +++ P ++L+++ ++ G I
Sbjct: 4 LLPLPVIMSXGFGLFLIPTATKNLRRIWAFPSILLLSIAMVFSLHLAIQQI--NGSSIYQ 61
Query: 62 MAGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLL 117
W +L G P ++ +++I V + ++S + + + Y F+ +
Sbjct: 62 YLWSWTINNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHD--EGYLRFFVYI 119
Query: 118 MLGAT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSF 173
T G++ + ++ ++ F E+ + +Y L + T AA A K V +G
Sbjct: 120 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 179
Query: 174 FLIGVALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNA 227
L+G+ + TG+L L +++ + IN ++ + L+ G ++ FPL+
Sbjct: 180 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 239
Query: 228 WAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIF 286
W PDA + P PI+ + +A +V AG++ +AR+L L ++ + ++ T+T+
Sbjct: 240 WLPDAMEG-PTPISALIHAATMVAAGIFLLARLLPLFISL---PLIMSFISLVGTITLFL 295
Query: 287 AELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG 346
AL QRD+KR + YS+ Q+G LA +G+ A +FH++ HA KA++FLG G
Sbjct: 296 GATLALAQRDIKRSLXYSTXSQLGXXXLALGIGS---YQAALFHLITHAYSKALLFLGSG 352
Query: 347 YVGIT---LGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
V + L G +K + GL K +P+T G +S G+P FWSK I+
Sbjct: 353 SVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIL 412
Query: 398 V-ATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+ L + F I+ F + + A Y FR ++ + F G
Sbjct: 413 SNSWLYSPFF--GIIASFTAGLTAFYMFR-IYLLTFDG 447
>pir||T13702 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Schlegelia
parviflora chloroplast (fragment)
>gi|703414|gb|AAA84616.1| (L36410) NADH dehydrogenase
subunit [Schlegelia parviflora]
Length = 700
Score = 141 bits (352), Expect = 2e-32
Identities = 113/452 (25%), Positives = 214/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ ++ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKEEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>pir||T12565 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Eccremocarpus scaber chloroplast (fragment)
>gi|3851737|gb|AAC72421.1| (AF102630) NADH dehydrogenase
subunit [Eccremocarpus scaber]
Length = 698
Score = 141 bits (352), Expect = 2e-32
Identities = 112/452 (24%), Positives = 213/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ +++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFATNLSIHQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLISNNEVNSPFVTLCATLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>sp|P57264|NUON_BUCAI NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|10038849|dbj|BAB12884.1| (AP001118) NADH
dehydrogenase I chain N [Buchnera sp. APS]
Length = 469
Score = 141 bits (352), Expect = 2e-32
Identities = 104/428 (24%), Positives = 206/428 (47%), Gaps = 34/428 (7%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK--YAMLFLLLMLGATGMIAT 127
V I + A L++ +I + S T +FS + P +K + +L ++ LGA + +
Sbjct: 46 VSILFHFNSNAILYIGMILISSICTCIFSYPWLLKYPFNKEEFYLLVIISTLGAISLTIS 105
Query: 128 GDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATG 186
+ + F+ +E+ ++ + L AY++ + + E+S+KYI+L G+ SSF L G+A +Y +G
Sbjct: 106 HHMASFFINIELISLPMFGLIAYSRYQKYSLESSLKYIILSGVSSSFLLFGIAWVYSISG 165
Query: 187 TLNMAHLAE---LSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVM 243
L+ + + ++ +V G+++++ L + + P + W PD YQ +P +
Sbjct: 166 GLDFLSIHKSFNFASEKEILVVLFGISMILLSLFFKLSIVPFHLWTPDIYQGSPTSVLSF 225
Query: 244 FSAFVVKAGLYAMARIL--YLLQKANGWSSVLRLVL-IMATLTVIFAELSALRQRDVKRM 300
FS AG ++ +L +L +N + V+ +L ++ L+++ L AL Q+D+KR
Sbjct: 226 FST----AGKISVFSVLLNFLSYFSNSDNKVIYFILSLIIILSILVGNLMALFQKDIKRF 281
Query: 301 IAYSSIGQIGLIAL---------AFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
+ Y+SI QIG + + +FSL A G + N A + + + + I
Sbjct: 282 LGYTSISQIGYLLIVLLVSHKNYSFSLEASAIYLCG-YLFSNIACLGIVNLISTSH--IN 338
Query: 352 LGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAIL 411
+ + + GL PL + LT+ +S+ G+P+ F KF I+ +
Sbjct: 339 NNASSINSYRGLFWSHPLLSSVLTLVLISSAGIPMTLGFIGKFYILSIVMIEHLWLIGFA 398
Query: 412 VLFASMVEAVYYFRLVHTMWFSGS-----GERVKEGWIV----IFLLLLAVLVVAIGIYP 462
L S++ Y R++ ++ S + W+ I + + ++++A+GIYP
Sbjct: 399 FLIGSLLGLYCYLRIILNLYLHPSKLFKRDLNIPLNWVYTPSGIVICISGIILLALGIYP 458
Query: 463 TPAWEIVK 470
P ++K
Sbjct: 459 NPLIGLIK 466
>gb|AAG26149.1| (AF123801) NADH dehydrogenase subunit F [Cabomba caroliniana]
Length = 414
Score = 141 bits (352), Expect = 2e-32
Identities = 109/418 (26%), Positives = 195/418 (46%), Gaps = 40/418 (9%)
Query: 6 SLLIALPLISAFFVPVL-KRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG 64
++LI L L+ +P K +++ P ++L+T + ++ G I
Sbjct: 2 TMLIGLGLL---LIPTATKNLRRIWAFPAVLLLTTVMVFSTKLAIQQI--NGSSIYEYLW 56
Query: 65 GWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
W +L G P ++ +++I V + ++S + + Y F +
Sbjct: 57 SWTITSDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDR--GYLRFFAYMTFF 114
Query: 121 AT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLI 176
T G++ + ++ +++F E+ + +Y L + T AA A K V +G L+
Sbjct: 115 TTSMLGLVTSPNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLL 174
Query: 177 GVALLYGATGTLNMAHLAEL-------STSINPIVAQVGLALVIFGLAVEAELFPLNAWA 229
G+ Y TG+ L E+ + IN A + L+ G ++ FPL+ W
Sbjct: 175 GILGFYLLTGSFEFQDLFEIFNNLIINNNEINSSFATLCAFLLFLGAVAKSAQFPLHVWL 234
Query: 230 PDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAE 288
PDA + P PI+ + +A +V AG++ +AR+L L ++ ++ ++ +TV+
Sbjct: 235 PDAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNIIALIGIITVLLGA 290
Query: 289 LSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG-- 346
AL QRD+KR +AYS++ Q+G I LA +G+ A +FH++ HA KA++FLG G
Sbjct: 291 TLALAQRDIKRSLAYSTMSQLGYIMLALGIGSYR---AALFHLITHAYSKALLFLGSGSI 347
Query: 347 ------YVGITLGGTE-LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
VG + ++ + GL K MP+T +G +S G+P FWSK I+
Sbjct: 348 IHSMEPIVGYSPAKSQNMALMGGLTKYMPITKTTFFLGTLSLCGIPPLACFWSKDEIL 405
>gb|AAG19145.1| (AE005012) F420H2:quinone oxidoreductase chain L; NuoL
[Halobacterium sp. NRC-1]
Length = 692
Score = 141 bits (351), Expect = 2e-32
Identities = 138/513 (26%), Positives = 235/513 (44%), Gaps = 73/513 (14%)
Query: 5 ASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG 64
AS L+AL ++ +F P K + + +P ++ T ++ W F V + G+ I
Sbjct: 17 ASFLVAL--LAGYFAP--KLLPKGGAIPGIVA-TAGSLVVSVWAFVTV-SQGEYIAESIY 70
Query: 65 GW-RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEP---IDKYAMLFLL 116
W P +L+ G P AA+ ++I+++V+F+ VFS+ + E + +Y L
Sbjct: 71 TWVAAPNAFSLHFGVLVDPLAAMMLVIVSLVAFLVHVFSLGYMNDEGEGGLHRYYAGLGL 130
Query: 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFL 175
+ ++ F+F E+ + +Y L ++ + A+ K ++ G FFL
Sbjct: 131 FTFSMLAFVVADNLLMAFMFFELVGLCSYLLIGFHFRQQGPPSAAKKAFLVTRFGDYFFL 190
Query: 176 IGVALLYGATGTLNMA----------HLAE----------------------LSTSINPI 203
IGV ++ GT H+AE + S
Sbjct: 191 IGVVAVFATFGTARFVATGEGAHAFPHMAEQALAAVGGEGTMPAHVAHFLDVVGMSAQQW 250
Query: 204 VAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARI--L 260
+ VGL LV+ G+ ++ FPL+ W PDA + P P++ + +A +V AG+Y +AR+
Sbjct: 251 FSVVGL-LVLGGVIGKSAQFPLHTWLPDAME-GPTPVSALIHAATMVAAGVYLVARMYGF 308
Query: 261 YLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGT 320
Y L +VL ++ ++ T +FA + + ++K+++AYS+I Q G + L G
Sbjct: 309 YAL-----LPTVLAIIALVGGFTALFAATMGVVKDELKQVLAYSTISQYGYMMLGLGTG- 362
Query: 321 QAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE-LEKFEGLGKRMPLTALALTIGAV 379
G A FH+L HA KA++FLG G V I + E + GL K+MP+T G++
Sbjct: 363 --GYIAASFHLLTHAFFKALLFLGAGSVIIAMHHNENMWDMGGLRKKMPVTYYTFLSGSL 420
Query: 380 STVGVPLFNVFWSKFRIIVATLQAGF-IWPAILVLFASMVEAVYY-----FRLVHTMWFS 433
+ G+ F FWSK I+ L G P +L +A + AV++ FR+V +
Sbjct: 421 ALAGIVPFAGFWSKDEILYEALIYGAGDSPILLAAYAMGLLAVFFTGFYTFRMVVLTFHG 480
Query: 434 GSGERVKEG-----WIVIF-LLLLAVLVVAIGI 460
E W V F L++L VL +G+
Sbjct: 481 EPRSDTAEDPHGVRWNVKFPLVVLGVLAATVGL 513
>pir||T13470 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Martinella
martinii chloroplast (fragment)
>gi|703129|gb|AAA84365.1| (L36402) NADH dehydrogenase
subunit [Martinella martinii]
Length = 700
Score = 141 bits (351), Expect = 2e-32
Identities = 114/453 (25%), Positives = 213/453 (46%), Gaps = 41/453 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ + I W
Sbjct: 12 MLIGVGLL--LFPTATKNVRRMWAFPSILLLSIVMIFATNLSIQQINISS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLM 118
+L G P ++ +++I V + ++S + + Y F M
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDQGYLRFXAYMSFFSTSM 127
Query: 119 LGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIG 177
LG ++ + ++ +++F E+ + +Y L + T AA A K V +G L+G
Sbjct: 128 LG---LVTSSNLVQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLG 184
Query: 178 VALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
+ Y TG+ L E+ + +N + AL+ G ++ FPL+ W PD
Sbjct: 185 ILGFYWITGSFEFRDLFEIFNNLISNNEVNCPFVTLCAALLFTGAVAKSAQFPLHVWLPD 244
Query: 232 AYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+
Sbjct: 245 AMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGLITVLLGATL 300
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV-- 348
AL Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 301 ALSQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIH 357
Query: 349 -GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 358 SMETIVGYSPDKSQNMVLMGGLRKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSW 417
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 418 LYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>pir||T13567 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Petitia
domingensis chloroplast (fragment)
>gi|1695973|gb|AAB37154.1| (U78697) NADH dehydrogenase
[Petitia domingensis]
Length = 691
Score = 141 bits (351), Expect = 2e-32
Identities = 114/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K+I++ P ++L++++ ++ ++ I W
Sbjct: 1 MLIGVGLL--LFPTATKKIRRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVWSW 56
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++IA V + ++S + + Y F + +T
Sbjct: 57 TLDNDFSLEFGYLIDPLTSIMSMLIATVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 114
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 115 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 174
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + ++ + AL+ G ++ FPL+ W PDA
Sbjct: 175 LGFYWITGSFEFRDLFEILKNLIYNNEVSFPFVTLCAALLFSGAVAKSAQFPLHVWLPDA 234
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +T++ A
Sbjct: 235 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGIITLLLGATLA 290
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ +FH++ HA KA++FLG G V
Sbjct: 291 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSVIHS 347
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK II +
Sbjct: 348 METVVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEIINDSWV 407
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ L + + A Y FR ++ + F G
Sbjct: 408 YSPIF-AIIALATAGLTAFYMFR-IYLLTFEG 437
>pir||T12556 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Amphitecna
apiculata chloroplast (fragment)
>gi|3851725|gb|AAC72415.1| (AF102624) NADH dehydrogenase
subunit [Amphitecna apiculata]
Length = 698
Score = 141 bits (351), Expect = 2e-32
Identities = 112/452 (24%), Positives = 213/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFATNLSIQQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPFAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIVNNLISNNEVNSPFVILCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +T++ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGLITILLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMXLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>pir||T12560 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Campsis
radicans chloroplast (fragment)
>gi|3851729|gb|AAC72417.1| (AF102626) NADH dehydrogenase
subunit [Campsis radicans]
Length = 698
Score = 141 bits (351), Expect = 2e-32
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFATNLSIQQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLISNNEVNYPFVTLCAALLFSGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNLVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF08106.1| (AF130144) NADH dehydrogenase subunit F [Campsis radicans]
Length = 751
Score = 141 bits (351), Expect = 2e-32
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ T+ I W
Sbjct: 20 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFATNLSIQQINTSS--IYQYVWSW 75
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 76 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 194 LGFYWITGSFEFRDLFEIFNNLISNNEVNYPFVTLCAALLFSGAVAKSAQFPLHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGLITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 366
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 367 METIVGYSPDKSQNLVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 456
>emb|CAC03500.1| (AJ250387) NADH dehydrogenase subunit [Maurandella antirrhiniflora]
Length = 705
Score = 141 bits (351), Expect = 2e-32
Identities = 114/453 (25%), Positives = 213/453 (46%), Gaps = 41/453 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ T I W
Sbjct: 20 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMVFSIHLSIQQINTNS--IYQYVWSW 75
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLM 118
+L G P A++ ++I V + ++S + + Y F + M
Sbjct: 76 TLDNDFSLEFGYLIDPLASIMSMLITTVGIMVLIYSDNYMAHDRGYLRFFSYMSFFSISM 135
Query: 119 LGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIG 177
LG ++ + ++ +++F E+ + +Y L + T AA A K V +G L+
Sbjct: 136 LG---LVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLX 192
Query: 178 VALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPD 231
+ Y TG+ L E+ + +N + + AL+ G ++ FPL+ W PD
Sbjct: 193 ILGFYWITGSFEFRDLFEIFNNLIHNNEVNSPLVTLCAALLFAGAVAKSAQFPLHVWLPD 252
Query: 232 AYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELS 290
A + P PI+ + +A +V AG++ +AR+L L ++ L+ + +T++
Sbjct: 253 AMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISFIGIITILLGATL 308
Query: 291 ALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV-- 348
AL Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 309 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIH 365
Query: 349 -GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATL 401
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 366 SMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSW 425
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 426 LYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 456
>pir||T12294 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Heppiella
ulmifolia chloroplast (fragment)
>gi|2791787|gb|AAB96930.1| (AF040147) NADH dehydrogenase
[Heppiella ulmifolia]
Length = 682
Score = 140 bits (350), Expect = 3e-32
Identities = 115/452 (25%), Positives = 213/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LIA+ L+ F K +++ P ++L++++ + +T I W
Sbjct: 11 MLIAVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSINLSIQLINSTS--IYQYVWSW 66
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 67 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAYD--QGYLRFFAYMSFFST 124
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 125 SMFGLVTSSNLIQIYIFWELVGMCSYILIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 184
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 185 LGFYWITGSFEFRDLFEILNDLIYNNEVNFPFVTLCAALLFAGAVAKSAKFPLHVWLPDA 244
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V G++ +AR+L L ++ L ++ T+TV+ A
Sbjct: 245 MEG-PTPISALIHAATMVARGIFLVARLLPLFIVI---PYIMNLNSVIGTITVLLGATLA 300
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 301 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 357
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T ++ G +S G+P FWSK I+ +
Sbjct: 358 METIVGYSPDKSQNIGLMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEILNDSWL 417
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 418 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 447
>pir||T12567 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Jacaranda
sparrei chloroplast (fragment)
>gi|3851739|gb|AAC72422.1| (AF102631) NADH dehydrogenase
subunit [Jacaranda sparrei]
Length = 698
Score = 140 bits (350), Expect = 3e-32
Identities = 113/452 (25%), Positives = 215/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ ++ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVXSW 67
Query: 67 RPPVGINL----YIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L I P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFXYLIDPLTSIMSMLITTVGXMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ + L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFELRDLFEIFNNLIYNNEVNSPFVILCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFVVI---PYIMNLISLIGIITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGS---YQSALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDGILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF27222.1|AF111742_1 (AF111742) NADH dehydrogenase [Craigia sp. Kubitzki and Appel 4]
Length = 700
Score = 140 bits (350), Expect = 3e-32
Identities = 112/444 (25%), Positives = 209/444 (46%), Gaps = 38/444 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ G ++ + I W
Sbjct: 20 ILIGIGLL--LFPTATKNLRRMWAFPNILLLSIVMIFSVGLSIQQINRSS--IYQYVWSW 75
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V ++S + + Y F + L T
Sbjct: 76 TINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSYD--QGYLRFFAYMSLFNT 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W PDA
Sbjct: 194 LGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG----- 346
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 366
Query: 347 ---YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 367 MEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRL 426
I+ AI+ + + A Y FR+
Sbjct: 427 YSPIF-AIIAWSTAGLTAFYMFRI 449
>gb|AAB37134.1| (U78683) NADH dehydrogenase [Clerodendrum chinense]
Length = 696
Score = 140 bits (349), Expect = 4e-32
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K + + P ++L++++ ++ ++ I W
Sbjct: 10 MLIGVGLL--FFPTATKNLHRIWAFPSVLLLSIVMLFSTNLSIQQINSSS--IYQYVWSW 65
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 66 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 123
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 124 SMVGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPTAANACQKAFVTNRLGDFGLLLGI 183
Query: 179 ALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ T+ +N + AL+ G ++ FPL+ W PDA
Sbjct: 184 LGFYWITGSFEFRDLFEILTNLIDNNEVNFPFVTLCAALLFAGAVAKSAQFPLHVWLPDA 243
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+ L ++ L+ ++ +T+ A
Sbjct: 244 MEG-PTPISALIHAATMVAAGIFLVARLFPLFIVL---PYIMNLIALIGVITLFLGATLA 299
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 300 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 356
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 357 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSKDEILTDSRL 416
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 417 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 446
>gb|AAF27199.1|AF111719_1 (AF111719) NADH dehydrogenase [Pavonia multiflora]
Length = 698
Score = 140 bits (349), Expect = 4e-32
Identities = 114/452 (25%), Positives = 211/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ G I W
Sbjct: 20 ILIGIGLL--LFPTATKNLRRMWAFPNILLLSIVMIFSVDLSIQQI--NGSSIYQYVWSW 75
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V ++S + + Y F + L T
Sbjct: 76 TINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLFNT 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W PDA
Sbjct: 194 LGFYWITGSFEFQDLFEIFNNLIYNNGVHLLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ +FH++ HA KA++FLG G + +
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---TALFHLITHAYSKALLFLGSGSIIHS 366
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G EK + GL K P+T +A IG +S G+P FWSK I+ +
Sbjct: 367 MEAVVGYSPEKSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWL 426
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 YSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 456
>gb|AAF44116.1| (AF230257) NADH dehydrogenase [Kostermansia malayana]
Length = 707
Score = 140 bits (349), Expect = 4e-32
Identities = 113/454 (24%), Positives = 213/454 (46%), Gaps = 43/454 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
++I + L+ F K I++ P ++L++++ ++ + I GW
Sbjct: 20 IIIGMGLL--LFPTATKNIRRMWAFPNILLLSIVMIFSVDLSIQQINRSS----IYQYGW 73
Query: 67 RPPVG------INLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
+ +I ++ + I V ++S + + Y F + L
Sbjct: 74 SWTINNDFSFEFGYFIDSLTSIMSIXITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLF 131
Query: 121 AT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLI 176
T G++ + ++ +++F E+ + +Y L + T AA A K V IG L+
Sbjct: 132 NTSMLGLVTSSNLIXIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLL 191
Query: 177 GVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
G+ Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W P
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLP 251
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L S++ L+ ++ +TV+
Sbjct: 252 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNLISLIGIITVLLGAT 307
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--- 346
AL Q+D+KR +AYS++ Q+G + +A +G+ A +FH++ HA KA++FLG G
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMVALGMGSYR---AALFHLITHAYSKALLFLGSGSII 364
Query: 347 -----YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 365 HSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEILSDS 424
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 425 WLYSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 456
>pir||T12663 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Clerodendrum
chinense chloroplast (fragment)
Length = 696
Score = 140 bits (349), Expect = 4e-32
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K + + P ++L++++ ++ ++ I W
Sbjct: 10 MLIGVGLL--FFPTATKNLHRIWAFPSVLLLSIVMLFSTNLSIQQINSSS--IYQYVWSW 65
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 66 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 123
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 124 SMVGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPTAANACQKAFVTNRLGDFGLLLGI 183
Query: 179 ALLYGATGTLNMAHLAELSTS------INPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ T+ +N + AL+ G ++ FPL+ W PDA
Sbjct: 184 LGFYWITGSFEFRDLFEILTNLIDNNEVNFPFVTLCAALLFAGAVAKSAQFPLHVWLPDA 243
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+ L ++ L+ ++ +T+ A
Sbjct: 244 MEG-PTPISALIHAATMVAAGIFLVARLFPLFIVL---PYIMNLIALIGVITLFLGATLA 299
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 300 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 356
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 357 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSKDEILTDSRL 416
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 417 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 446
>gb|AAA84101.1| (L36395) NADH dehydrogenase subunit [Callicarpa dichotoma]
Length = 665
Score = 139 bits (348), Expect = 5e-32
Identities = 112/452 (24%), Positives = 214/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ ++ I W
Sbjct: 11 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVWSW 66
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + +T
Sbjct: 67 TLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 124
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 125 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 184
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 185 LGFYWITGSFEFRDLFEILNNLIYNNEVNFPFVTLCAALLFAGAVAKSAQFPLHVWLPDA 244
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +T++ A
Sbjct: 245 MEG-PTPISALILAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITLLLGATLA 300
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ +FH++ HA KA++FLG G V
Sbjct: 301 LTQKDIKRGLAYSTMSQLGYMMLALGMGSYRN---ALFHLITHAYSKALLFLGSGSVIHS 357
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 358 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 417
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 418 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 447
>pir||T13763 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Tabebuia
heterophylla chloroplast (fragment)
>gi|703445|gb|AAA84659.1| (L36416) NADH dehydrogenase
subunit [Tabebuia heterophylla]
Length = 700
Score = 139 bits (348), Expect = 5e-32
Identities = 113/452 (25%), Positives = 212/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P + L++++ ++ T+ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSIFLLSIVMIFATNLSIQQINTSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 FGFYWITGSFEFRDLFEIFNNLISNNEVNSPFVILCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNFISLIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF27241.1|AF111762_1 (AF111762) NADH dehydrogenase [Apeiba tibourbou]
Length = 714
Score = 139 bits (348), Expect = 5e-32
Identities = 113/452 (25%), Positives = 212/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K +++ P ++L++++ ++ + I W
Sbjct: 23 ILIGMGLL--FFPTATKNLRRMWAFPNILLLSIVMIFSVDLSIQQINRSS--IYQYVWSW 78
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V + ++S + + Y F + L T
Sbjct: 79 TINNDFSFEFGYFIDSLTSIMSILITTVGILVLIYSDNYMSHD--QGYLRFFAYMSLFNT 136
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 137 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGI 196
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + + +L+ G ++ FP + W PDA
Sbjct: 197 IGFYWITGSFEFQDLFEIFNNLIYNNEVNFLFVTLCASLLFAGAVAKSAQFPFHVWLPDA 256
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ + ++ +TV+ A
Sbjct: 257 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNXISLIGIITVLLGATLA 312
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG----- 346
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 313 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 369
Query: 347 ---YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 370 MEAIVGYSPDKSQNMVFMGGLRKHVPITKIAFLVGTLSLCGIPPLACFWSKDEILXDSWL 429
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 430 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 459
>gb|AAC03341.1| (AF012845) NADH dehydrogenase [Streptocarpus johannis]
Length = 687
Score = 139 bits (347), Expect = 7e-32
Identities = 101/384 (26%), Positives = 185/384 (47%), Gaps = 37/384 (9%)
Query: 75 YIGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLMLGATGMIATGDI 130
+I P ++ ++I V + ++S + + Y F + MLG ++ + ++
Sbjct: 79 FIDPLTSIMSMLITTVGIMVLIYSDNYMAYDQGYLRFFAYMSFFSISMLG---LVTSSNL 135
Query: 131 FNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
+++F+E+ + +Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 136 IQIYLFLELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFE 195
Query: 190 MAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV- 242
L E+ + +N + AL+ G ++ FPL+ W PDA + P PI+
Sbjct: 196 FRDLFEIFNNLIYNNEVNSPFVTLCAALLFSGAVAKSAQFPLHVWLPDAMEG-PTPISAH 254
Query: 243 MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
+ +A +V AG++ +AR+L L ++ L+ ++ +TV A Q+D+KR +A
Sbjct: 255 IHAATMVAAGIFLVARLLPLFIVI---PYIMNLISVVGIITVFLGATLAFAQKDIKRGLA 311
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEK 359
YS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V TL G +K
Sbjct: 312 YSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHSMETLVGYSPDK 368
Query: 360 FE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL 413
+ GL K +P+T ++ G +S G+P FWSK I L +++ I +
Sbjct: 369 SQNMVIMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAI 424
Query: 414 FASMVEAV--YYFRLVHTMWFSGS 435
A + +Y ++ + F G+
Sbjct: 425 IAWATAGLTSFYMFPIYLLTFEGT 448
>gb|AAF23620.1| (AF188185) NADH dehydrogenase [Halleria lucida]
Length = 700
Score = 139 bits (347), Expect = 7e-32
Identities = 113/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ ++ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFXYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCAALLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ + TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLKGINTVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>gb|AAF27211.1|AF111731_1 (AF111731) NADH dehydrogenase [Ceiba rosea]
Length = 702
Score = 139 bits (347), Expect = 7e-32
Identities = 107/415 (25%), Positives = 195/415 (46%), Gaps = 37/415 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ G I W
Sbjct: 20 ILIGMGLL--LFPMATKNLRRMWAFPNILLLSIVMIFSVDLSIQQI--NGSSIYQYVWSW 75
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V ++S + + Y F + L T
Sbjct: 76 TINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLFNT 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ S + + + +L+ G ++ FPL+ W PDA
Sbjct: 194 LGFYWITGSFEFQDLFEIFNNLIYSNEVPFLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 253
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L S++ L+ ++ +TV+ A
Sbjct: 254 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PSIMNLISLIGIITVLLGATLA 309
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG----- 346
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 310 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSIIHS 366
Query: 347 ---YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRII 397
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+
Sbjct: 367 MEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEIL 421
>gb|AAF44114.1| (AF230255) NADH dehydrogenase [Durio oxleyanus]
Length = 707
Score = 139 bits (347), Expect = 7e-32
Identities = 112/454 (24%), Positives = 213/454 (46%), Gaps = 43/454 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ + I GW
Sbjct: 20 ILIGMGLL--LFPTATKNLRRMWAFPNILLLSIVMIFSVDLSIQQINRSS----IYQYGW 73
Query: 67 RPPVG------INLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
+ +I ++ ++I V ++S + + Y F + L
Sbjct: 74 SWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLF 131
Query: 121 AT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLI 176
T G++ + ++ +++F E+ + +Y L + T AA A K V IG L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGLLL 191
Query: 177 GVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
G+ Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W P
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNVIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLP 251
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+
Sbjct: 252 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGAT 307
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--- 346
AL Q+D+KR +AYS++ Q+G + +A +G+ A +FH++ HA KA++FLG G
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMVALGMGSYR---AALFHLITHAYSKALLFLGSGSII 364
Query: 347 -----YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 365 HSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEILSDS 424
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 425 WLYSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 456
>pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M NMA2229
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380848|emb|CAB85440.1| (AL162758) NADH
dehydrogenase chain M [Neisseria meningitidis Z2491]
Length = 498
Score = 139 bits (347), Expect = 7e-32
Identities = 106/427 (24%), Positives = 198/427 (45%), Gaps = 19/427 (4%)
Query: 66 WRPPVGINLYIGP--FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATG 123
W P + IN +G + LF+++ A ++ + + + ++ P +Y FL++ G
Sbjct: 70 WIPLLKINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPA-QYMAAFLIMSGLING 128
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYG 183
A D +VF E I Y + AS+K + +GS L+ + LY
Sbjct: 129 AFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY 188
Query: 184 ATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVM 243
TG+ ++ + I V Q+ A AV+ +FP++ W PDA+ AP +++
Sbjct: 189 QTGSFSIVDFQNIK-QIPLGVQQLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMV 247
Query: 244 FSAFVVKAGLYAMAR-ILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
+A +K G Y R IL ++ A + + ++++++ + VI+ + AL Q D+K+++A
Sbjct: 248 LAAITLKLGAYGFLRFILPIMPDAARYFA--PVIIVLSLIAVIYIGMVALVQTDMKKLVA 305
Query: 303 YSSIGQIGLIALAFSLGTQA-----GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTEL 357
YSSI +G + L L + + M++H V A MF+ +G + L +
Sbjct: 306 YSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNI 365
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASM 417
+ G+ MP A + + ++ G+P + F +F +I+ ++ F W L +
Sbjct: 366 ADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNF-WVGALAAMTLI 424
Query: 418 VEAVY----YFRLVHTMWFSGSGERVKEGWIVIFLLL--LAVLVVAIGIYPTPAWEIVKR 471
A Y Y R++ + +K+ F +L LAV V+ +G+YP E+V +
Sbjct: 425 YGASYTLWMYKRVIFGAIHNSHVAEMKDINCREFAILAVLAVAVLGMGLYPNAFIEVVHQ 484
Query: 472 AGSDIFA 478
A +D+ A
Sbjct: 485 AANDLIA 491
>pir||T12125 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Streptocarpus johannis chloroplast (fragment)
Length = 686
Score = 139 bits (347), Expect = 7e-32
Identities = 101/384 (26%), Positives = 185/384 (47%), Gaps = 37/384 (9%)
Query: 75 YIGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLFLLLMLGATGMIATGDI 130
+I P ++ ++I V + ++S + + Y F + MLG ++ + ++
Sbjct: 79 FIDPLTSIMSMLITTVGIMVLIYSDNYMAYDQGYLRFFAYMSFFSISMLG---LVTSSNL 135
Query: 131 FNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
+++F+E+ + +Y L + T AA A K V +G L+G+ Y TG+
Sbjct: 136 IQIYLFLELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFE 195
Query: 190 MAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV- 242
L E+ + +N + AL+ G ++ FPL+ W PDA + P PI+
Sbjct: 196 FRDLFEIFNNLIYNNEVNSPFVTLCAALLFSGAVAKSAQFPLHVWLPDAMEG-PTPISAH 254
Query: 243 MFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIA 302
+ +A +V AG++ +AR+L L ++ L+ ++ +TV A Q+D+KR +A
Sbjct: 255 IHAATMVAAGIFLVARLLPLFIVI---PYIMNLISVVGIITVFLGATLAFAQKDIKRGLA 311
Query: 303 YSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV---GITLGGTELEK 359
YS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V TL G +K
Sbjct: 312 YSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHSMETLVGYSPDK 368
Query: 360 FE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVL 413
+ GL K +P+T ++ G +S G+P FWSK I L +++ I +
Sbjct: 369 SQNMVIMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAI 424
Query: 414 FASMVEAV--YYFRLVHTMWFSGS 435
A + +Y ++ + F G+
Sbjct: 425 IAWATAGLTSFYMFPIYLLTFEGT 448
>pir||T13242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypioides
kirkii chloroplast (fragment) >gi|1654250|gb|AAB17748.1|
(U55329) Gossypioides kirkii NADH dehydrogenase
Length = 688
Score = 139 bits (346), Expect = 9e-32
Identities = 113/452 (25%), Positives = 212/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ G I W
Sbjct: 8 ILIGVXLL--LFPTATKNLRRMWAFPNILLLSIVMIFSVDLSIQQI--NGSSIYQYVWSW 63
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V ++S + + Y F + L T
Sbjct: 64 TINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W PDA
Sbjct: 182 LGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FL G + +
Sbjct: 298 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLASGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G EK + GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 355 MEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 444
>pir||T13373 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Kokia
drynarioides chloroplast (fragment)
>gi|1654266|gb|AAB17756.1| (U55330) Kokia drynarioides
NADH dehydrogenase
Length = 688
Score = 139 bits (346), Expect = 9e-32
Identities = 113/452 (25%), Positives = 212/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ G I W
Sbjct: 8 ILIGVXLL--LFPTATKNLRRMWAFPNILLLSIVMIFSVDLSIQQI--NGSSIYQYVWSW 63
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V ++S + + Y F + L T
Sbjct: 64 TINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLFNT 121
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V IG L+G+
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 181
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W PDA
Sbjct: 182 LGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 241
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 242 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 297
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGIT 351
L Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FL G + +
Sbjct: 298 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLASGSIIHS 354
Query: 352 LG---GTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
+ G EK + GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 355 MEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEILSDSWL 414
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 YSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 444
>pir||T12295 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Pearcea
hypocyrtiflora chloroplast (fragment)
>gi|2791791|gb|AAB96931.1| (AF040150) NADH dehydrogenase
[Pearcea hypocyrtiflora]
Length = 683
Score = 139 bits (346), Expect = 9e-32
Identities = 110/452 (24%), Positives = 210/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LIA+ L+ F K +++ +P ++L++++ + ++ I W
Sbjct: 12 MLIAVGLL--LFPTATKSLRRMWALPSILLLSIVMIFSTNLSIQLINSSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ ++I V + V+S + + Y F + +T
Sbjct: 68 NLDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLVYSDNYMAYD--QGYLRFFAYISFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++ E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMFGLVTSSNLIQIYISWELVGMCSYLLIGFWFTRSLAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ +N + AL+ G ++ FP + W PDA
Sbjct: 186 LGFYWITGSFEFQDLFEILNDLIYDNQVNLPFVTLCAALLFAGAVAKSAQFPFHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIAI---PYIMNLISVIGLITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G +
Sbjct: 302 LAQKDIKRGLAYSAMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSIIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T ++ G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMGLMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ I + A + E +Y ++ + F G
Sbjct: 419 YSPIFAIIALATAGLTE--FYMIRIYLLTFEG 448
>pir||T12589 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Radermachera
frondosa chloroplast (fragment)
>gi|3851753|gb|AAC72429.1| (AF102638) NADH dehydrogenase
subunit [Radermachera frondosa]
Length = 700
Score = 139 bits (346), Expect = 9e-32
Identities = 114/454 (25%), Positives = 211/454 (46%), Gaps = 41/454 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K I++ P ++L++++ ++ + I W
Sbjct: 12 MLIGVGLL--LFPTATKNIRRMWAFPSILLLSIVMIFATNLSIQQINNSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ + +I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMLRLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMXFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL--------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
Y TG+ L E+ + +N + AL+ G ++ FPL+ W P
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLISNNNNEVNSPFVTLCAALLFAGAVAKSAQFPLHVWLP 245
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+
Sbjct: 246 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGLITVLLGAT 301
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV- 348
AL Q+D+KR +AYS++ Q+G + LA G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LALAQKDIKRGLAYSTMSQLGYMMLALGXGSYR---SALFHLITHAYSKALLFLGSGSVI 358
Query: 349 --GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
T+ G K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 HSMETIVGYSPHKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDS 418
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 WLYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 450
>gb|AAF27245.1|AF111767_1 (AF111767) NADH dehydrogenase [Glyphaea brevis]
Length = 713
Score = 139 bits (346), Expect = 9e-32
Identities = 114/454 (25%), Positives = 213/454 (46%), Gaps = 41/454 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ FF K +++ P ++L++++ ++ + I W
Sbjct: 20 VLIGMGLL--FFPTATKNLRRMWTFPNILLLSIVMIFSVDLSIQQINRSS--IYQYVWSW 75
Query: 67 RPPVGINLYIGPF----AALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G F ++ ++I V + ++S + + Y F + L T
Sbjct: 76 TINNDFSFEFGYFIDSLTSIMSILITTVGILVLIYSDNYMSHD--QGYLRFFAYMSLFNT 133
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ I +Y L + T AA A K V IG L+G+
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGICSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGI 193
Query: 179 ALLYGATGTLNMAHLAEL--------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
Y TG+ L E+ + ++ + + +L+ G ++ FP + W P
Sbjct: 194 IGFYWITGSFEFQDLFEIFNNLIYNNNNEVHFLFVTLCASLLFAGAVAKSAQFPFHVWLP 253
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+
Sbjct: 254 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLLGIITVLLGAT 309
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--- 346
AL Q+D+KR +AYS++ Q+G + LA +G+ A +FH++ HA KA++FLG G
Sbjct: 310 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---AALFHLITHAYSKALLFLGSGSII 366
Query: 347 -----YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 367 HSMEAIVGYSPDKSQNMVFMGGLRKYVPITKIAFLVGTLSLCGIPPLACFWSKDEILSDS 426
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 427 WLYSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 458
>pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225481|gb|AAF40712.1| (AE002382) NADH dehydrogenase
I, M subunit [Neisseria meningitidis MC58]
Length = 498
Score = 139 bits (346), Expect = 9e-32
Identities = 106/428 (24%), Positives = 197/428 (45%), Gaps = 21/428 (4%)
Query: 66 WRPPVGINLYIGP--FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATG 123
W P + IN +G + LF+++ A ++ + + + ++ P +Y FL++ G
Sbjct: 70 WIPLLKINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPA-QYMAAFLIMSGLING 128
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYG 183
A D +VF E I Y + AS+K + +GS L+ + LY
Sbjct: 129 AFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYY 188
Query: 184 ATGTLNMAHLAELSTSINPIVAQVGLALVIF-GLAVEAELFPLNAWAPDAYQAAPHPITV 242
TG+ ++ + P+ Q L + F AV+ +FP++ W PDA+ AP ++
Sbjct: 189 QTGSFSIVDFQNIEQI--PLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSM 246
Query: 243 MFSAFVVKAGLYAMAR-ILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
+ +A +K G Y R IL ++ A + + + +++++ + VI+ + AL Q D+K+++
Sbjct: 247 VLAAITLKLGAYGFLRFILPIMPDAARYFAPV--IIVLSLIAVIYIGMVALVQTDMKKLV 304
Query: 302 AYSSIGQIGLIALAFSLGTQAGVD-----AGVFHMLNHAIVKAMMFLGVGYVGITLGGTE 356
AYSSI +G + L L +D + M++H V A MF+ +G + L
Sbjct: 305 AYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRN 364
Query: 357 LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFAS 416
+ + G+ MP A + + ++ G+P + F +F +I+ ++ F W L
Sbjct: 365 IADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNF-WVGALAAMTL 423
Query: 417 MVEAVYYFRLVHTMWFSG-SGERVKEGWIV-----IFLLLLAVLVVAIGIYPTPAWEIVK 470
+ A Y + + F V E + L +LAV V+ +G+YP E+V
Sbjct: 424 IYGASYTLWMYKRVIFGAIHNPHVAEMQDINCREFAILAILAVAVLGMGLYPNAFIEVVH 483
Query: 471 RAGSDIFA 478
+A +D+ A
Sbjct: 484 QAANDLIA 491
>gb|AAF44113.1| (AF230254) NADH dehydrogenase [Cullenia ceylanica]
Length = 707
Score = 139 bits (346), Expect = 9e-32
Identities = 112/454 (24%), Positives = 212/454 (46%), Gaps = 43/454 (9%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L+ ++ ++ + I GW
Sbjct: 20 ILIGMGLL--LFPTATKNLRRMWAFPNILLLNIVMIFSVDLSIQQINRSS----IYQYGW 73
Query: 67 RPPVG------INLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
+ +I ++ ++I V ++S + + Y F + L
Sbjct: 74 SWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHD--QGYLRFFAYMSLF 131
Query: 121 AT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLI 176
T G++ + ++ +++F E+ + +Y L + T AA A K V IG L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLL 191
Query: 177 GVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
G+ Y TG+ L E+ + ++ + + +L+ G ++ FPL+ W P
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLP 251
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+
Sbjct: 252 DAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGAT 307
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--- 346
AL Q+D+KR +AYS++ Q+G + +A +G+ A +FH++ HA KA++FLG G
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMVALGMGSYR---AALFHLITHAYSKALLFLGSGSII 364
Query: 347 -----YVGITLGGTELEKF-EGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
VG + ++ F GL K +P+T +A +G +S G+P FWSK I+ +
Sbjct: 365 HSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEILSDS 424
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 425 WLYSPIF-AIIAWSTAGLTAFYMFR-IYLLTFEG 456
>sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|3282578|gb|AAC25004.1| (AF029365) NUOM
[Rhodobacter capsulatus] >gi|1586527|prf||2204231H NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 512
Score = 138 bits (345), Expect = 1e-31
Identities = 113/493 (22%), Positives = 211/493 (41%), Gaps = 30/493 (6%)
Query: 1 MSQVASLLIALPLISAFFVPVLKRIKQSLI---MPYLILITLIQTGIAGWVFYEVYTTGK 57
M + S++ LPL +A + V+ R ++ L + T + + +
Sbjct: 1 MQNLLSIITFLPLAAAAVLAVVSRGSGPAADRNAKWVALTATVVTFLVSLLLLAGFDPAN 60
Query: 58 PIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKYAMLFLL 116
P + +G++ +G + +L + + +F+ + A VE + +Y + FL+
Sbjct: 61 PGMQFVEDRAWIMGLHYKLG-VDGISILFVMLTTFLMPLTIASAWHVETRVKEYMIAFLV 119
Query: 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLI 176
L G+ D+ ++F E I + + E A+ K+ + +GS L+
Sbjct: 120 LEALMIGVFVALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYAAFKFFLYTFLGSVLMLV 179
Query: 177 GVALLYGATGTLNMAHLAELSTSINPIV----------AQVGLALVIFG-LAVEAELFPL 225
+ +Y GT ++ L + Q L L F AV+ ++P+
Sbjct: 180 AMVAMYMMAGTTDIVTLMSFDFPHADLPFLGWWTLTGGVQTLLFLAFFASFAVKMPMWPV 239
Query: 226 NAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVI 285
+ W PDA+ AP +V+ +A ++K G Y R + G ++ V I++ + ++
Sbjct: 240 HTWLPDAHVQAPTAGSVVLAAVLLKMGGYGFLRFSLPMFPV-GAETMTTFVFILSAVAIV 298
Query: 286 FAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGV 345
+ L AL Q D+K++IAYSS+ +G + + Q GVD +F ML+H + +FL V
Sbjct: 299 YTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALFLCV 358
Query: 346 GYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGF 405
G + + E+ + GL RMP AL ++ VG+P + F +F ++ Q
Sbjct: 359 GVIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLLGIFQVN- 417
Query: 406 IWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGWIVI---------FLLLLAVLVV 456
W A+ ++ A Y L + F GE VKE I L + +
Sbjct: 418 TWVALFATSGVILSAAYALWLYRRVVF---GELVKESLKTISDMTTREKAIFAPLVAMTL 474
Query: 457 AIGIYPTPAWEIV 469
+G+YP+ +++
Sbjct: 475 LLGVYPSLVTDLI 487
>gb|AAB37167.1| (U78709) NADH dehydrogenase [Tinnea zambesiaca]
Length = 698
Score = 138 bits (345), Expect = 1e-31
Identities = 112/454 (24%), Positives = 214/454 (46%), Gaps = 39/454 (8%)
Query: 5 ASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG 64
A +LI + L+ F K + + P ++L++++ ++ ++ I
Sbjct: 8 APMLIGVGLL--LFPTATKNLHRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVW 63
Query: 65 GWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
W +L G P ++ +++I V + ++S + + Y F +
Sbjct: 64 SWTLDNDFSLEFGCLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFF 121
Query: 121 AT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLI 176
+T G++ + ++ +++F E+ + +Y L + T AA A K V +G L+
Sbjct: 122 STSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLL 181
Query: 177 GVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
G+ Y TG+ L E+ + ++N + AL+ G ++ FPL+ W P
Sbjct: 182 GILGFYWITGSFEFQDLFEILNNLIYNNAVNFPFVNLCAALLFAGAVAKSAQFPLHVWLP 241
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V G++ +AR+L L ++ L+ ++ +T++
Sbjct: 242 DAMEG-PTPISALIHAATMVXXGIFLVARLLPLFIVI---PYIMNLISLIGIITLLLGAT 297
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV- 348
AL Q+D+KR +AYS++ Q+G + A +G+ + +FH++ HA KA++FLG G V
Sbjct: 298 LALAQKDIKRGLAYSTMSQLGYMMFALGMGSSR---SALFHLITHAYSKALLFLGSGSVI 354
Query: 349 --GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
TL G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 355 HSMETLVGYSPDKSQNMGLTGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSKDEILNDS 414
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 WLYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 446
>gb|AAD52733.1|AF123675_1 (AF123675) NADH dehydrogenase [Angelonia pubescens]
Length = 700
Score = 138 bits (345), Expect = 1e-31
Identities = 111/452 (24%), Positives = 211/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F V K +++ P ++L++++ ++ + I W
Sbjct: 12 MLIGVGLL--LFPTVTKNLRRMWAFPSILLLSIVMIFSTNLSIQQINSNS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+ G P ++ ++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSFEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHD--QGYLRFFSYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGXXXXXXGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + + AL+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAALLFVGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ +AR+L L ++ L+ ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVARLLPLFIVI---PYIMNLISLIGIITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ A++ + A Y FR ++ + F G
Sbjct: 419 YSPIF-AVIAWSTAGFTAFYMFR-IYLLTFEG 448
>gb|AAF37194.1| (AF190906) NADH dehydrogenase [Martynia annua]
Length = 699
Score = 138 bits (345), Expect = 1e-31
Identities = 110/452 (24%), Positives = 212/452 (46%), Gaps = 39/452 (8%)
Query: 7 LLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGW 66
+LI + L+ F K +++ P ++L++++ ++ ++ I W
Sbjct: 12 MLIGVGLL--LFPTATKNLRRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVWSW 67
Query: 67 RPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT 122
+L G P ++ +++I V + ++S + + Y F + +T
Sbjct: 68 TLDNDFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFFST 125
Query: 123 ---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGV 178
G++ + ++ +++F E+ + +Y L + T AA A K V +G L+G+
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 179 ALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDA 232
Y TG+ L E+ + +N + L+ G ++ FPL+ W PDA
Sbjct: 186 LGFYWITGSFEFRDLFEIFNNLIYNNEVNSTFVSLCALLLFAGAVAKSAQFPLHVWLPDA 245
Query: 233 YQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSA 291
+ P PI+ + +A +V AG++ + R+L L ++ + ++ +TV+ A
Sbjct: 246 MEG-PTPISALIHAATMVAAGIFLVVRLLPLFIVI---PYIMNFISLIGIITVLLGATLA 301
Query: 292 LRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV--- 348
L Q+D+KR +AYS++ Q+G + LA +G+ + +FH++ HA KA++FLG G V
Sbjct: 302 LAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---SALFHLITHAYSKALLFLGSGSVIHS 358
Query: 349 GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
T+ G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 359 METIVGYSPDKSQNMALMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILNDSWL 418
Query: 403 AGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 419 YSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 448
>pir||T13769 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Tinnea
zambesiaca chloroplast (fragment)
Length = 698
Score = 138 bits (345), Expect = 1e-31
Identities = 112/454 (24%), Positives = 214/454 (46%), Gaps = 39/454 (8%)
Query: 5 ASLLIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG 64
A +LI + L+ F K + + P ++L++++ ++ ++ I
Sbjct: 8 APMLIGVGLL--LFPTATKNLHRMWAFPSILLLSIVMIFSTNLSIQQINSSS--IYQYVW 63
Query: 65 GWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLG 120
W +L G P ++ +++I V + ++S + + Y F +
Sbjct: 64 SWTLDNDFSLEFGCLIDPLTSIMLMLITTVGIMVLIYSDNYMAHD--QGYLRFFAYMSFF 121
Query: 121 AT---GMIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLI 176
+T G++ + ++ +++F E+ + +Y L + T AA A K V +G L+
Sbjct: 122 STSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLL 181
Query: 177 GVALLYGATGTLNMAHLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAP 230
G+ Y TG+ L E+ + ++N + AL+ G ++ FPL+ W P
Sbjct: 182 GILGFYWITGSFEFQDLFEILNNLIYNNAVNFPFVNLCAALLFAGAVAKSAQFPLHVWLP 241
Query: 231 DAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAEL 289
DA + P PI+ + +A +V G++ +AR+L L ++ L+ ++ +T++
Sbjct: 242 DAMEG-PTPISALIHAATMVXXGIFLVARLLPLFIVI---PYIMNLISLIGIITLLLGAT 297
Query: 290 SALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYV- 348
AL Q+D+KR +AYS++ Q+G + A +G+ + +FH++ HA KA++FLG G V
Sbjct: 298 LALAQKDIKRGLAYSTMSQLGYMMFALGMGSSR---SALFHLITHAYSKALLFLGSGSVI 354
Query: 349 --GITLGGTELEKFE------GLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
TL G +K + GL K +P+T + +G +S G+P FWSK I+ +
Sbjct: 355 HSMETLVGYSPDKSQNMGLTGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSKDEILNDS 414
Query: 401 LQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
I+ AI+ + + A Y FR ++ + F G
Sbjct: 415 WLYSPIF-AIIAWATAGLTAFYMFR-IYLLTFEG 446
>pir||S71136 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Arabidopsis
thaliana mitochondrion >gi|1536885|emb|CAA65381.1|
(X96535) NADH-ubiquinone oxidoreductase [Arabidopsis
thaliana] >gi|6851016|emb|CAA69771.3| (Y08501) NADH
dehydrogenase subunit 2 [Arabidopsis thaliana]
Length = 499
Score = 138 bits (344), Expect = 1e-31
Identities = 102/408 (25%), Positives = 188/408 (46%), Gaps = 31/408 (7%)
Query: 79 FAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFME 138
F +F L+++ I+ F + ++ +L L G MI+ D+ +++ +E
Sbjct: 95 FCQIF-LLLSTAGTISMCFDSSDQERFDAFEFIVLIPLPTRGMLFMISAHDLIAMYLAIE 153
Query: 139 ITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELS 197
++ Y + A + E + EA KY++LG S L G +++YG+TG + LA++
Sbjct: 154 PQSLCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKIL 213
Query: 198 TSINPIVAQ-----VGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAG 252
T A+ +G+ + G + P + WAPD Y+ +P P+T S +
Sbjct: 214 TGYEITGARSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYEGSPTPVTAFLS---IAPK 270
Query: 253 LYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLI 312
+ A IL + + +++ ++ + ++I L+A+ Q VKR +A+SSIG +G I
Sbjct: 271 ISISANILRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYI 330
Query: 313 ALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLG---KRMPL 369
FS GT G+ + +L + A+M + + L T ++ LG K P+
Sbjct: 331 RTGFSCGTIEGIQS----LLIGIFIYALMTMDAFAIVSALRQTRVKYIADLGALAKTNPI 386
Query: 370 TALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHT 429
+A+ +I S G+P F SKF + A L G + A + + S++ YY RLV
Sbjct: 387 SAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRFYYIRLVKR 446
Query: 430 MWFSGSGERVKEGWIV---------IFLLLLAVLVVAIGIYPTPAWEI 468
M+F WI+ + L + + + + +YP+P + +
Sbjct: 447 MFFD-----TPRTWILYEPMDRNKSLLLAMTSFFITSSLLYPSPLFSV 489
>sp|Q9ZD13|NUON_RICPR NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|7432122|pir||H71657 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain N RP537 - Rickettsia
prowazekii >gi|3861086|emb|CAA14986.1| (AJ235272) NADH
DEHYDROGENASE I CHAIN N (nuoN1) [Rickettsia prowazekii]
Length = 458
Score = 138 bits (344), Expect = 1e-31
Identities = 101/385 (26%), Positives = 187/385 (48%), Gaps = 19/385 (4%)
Query: 84 VLIIAVVSFIT----AVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEI 139
+L+ +VS I ++ + +K E + L LL ++G I++ + LF ME+
Sbjct: 72 ILLFTIVSLIIYRDYSILVGETLKFE----FITLMLLSIVGIFVAISSRNFLLLFCGMEL 127
Query: 140 TAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGATGTL---NMAHLAE 195
TA+T+YAL + +++E ++KY +LG + S L G++ +YG G++ ++ H
Sbjct: 128 TALTSYALAGFKLNDIKSSEGALKYFILGSLVSCLSLFGISFIYGFGGSIQFDDILHQLN 187
Query: 196 LSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYA 255
+ I P + +G+ L + + + PL+ W PD Y+ +P F+A K G+
Sbjct: 188 NDSEIKPGLI-IGIVLFLSSIFFKLASSPLHFWIPDVYEGSPISSVTYFTA-ASKIGMVI 245
Query: 256 MARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALA 315
+ + L N + L+ I+A L+++F A+RQ +KR++AYS+I IG + +
Sbjct: 246 VLLNISKLIIGNYYPINYNLIKIIAILSMLFGAFGAIRQTSLKRLMAYSTILNIGYVLIG 305
Query: 316 FSLGTQAGVDAGVFHMLNHAIVKAMMFLG-VGYVGITLGGTELEKFEGLGKRMPLTALAL 374
L Q G A + ++L +A+V F + G + + EG+ + A +
Sbjct: 306 VLLHNQEGYKAALLYILIYAVVSIGFFTCLIMLFGKDVDNASFKTIEGIAETHKTIAALI 365
Query: 375 TIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
+I S +G+P F+ K+ + + A +F S+V A YY ++V M+FS
Sbjct: 366 SIVMFSMIGIPPLTGFFGKYYLFYQAINKKEFTLAYCGIFTSVVAAFYYLKVVKAMYFSK 425
Query: 435 SGERVK----EGWIVIFLLLLAVLV 455
+K G ++I L+L L+
Sbjct: 426 KIAIIKLPMQYGLLLINYLVLGFLL 450
>sp|P57262|NUOL_BUCAI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|10038847|dbj|BAB12882.1| (AP001118) NADH
dehydrogenase I chain L [Buchnera sp. APS]
Length = 614
Score = 138 bits (343), Expect = 2e-31
Identities = 114/411 (27%), Positives = 203/411 (48%), Gaps = 28/411 (6%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGD 129
+ ++ + + +I V + +FS ++ + + L + + ++ D
Sbjct: 75 IDFGFFLDGLSLSMLFVITGVGLLIHIFSSWYMRYKEGQSRFFAYTNLFIASMSVLVLAD 134
Query: 130 IFNLFVFM--EITAITAYALTAYNKTGEAAE-ASMKYIVLGGIGSSFFLIGVALLYGATG 186
F LF+++ E ++ +Y L + T + K +L + F +IG+ L+Y
Sbjct: 135 NF-LFMYLGWEGVSVCSYLLIGFYYTELKNNLCAFKAFILTRVSDVFLMIGMFLIYREFN 193
Query: 187 TLNMAHLAELSTSINP----IVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITV 242
+ N + LS+ +N + + L L++ + A+L PL W DA P P++
Sbjct: 194 SFNFQEIKFLSSFLNVENFYYLDYITLFLLLGVIGKSAQL-PLQTWLSDA-MVGPTPVSA 251
Query: 243 MF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
+ +A +V AG+Y +AR +L G +L LV ++ TLT++ + +SAL Q+D+KR++
Sbjct: 252 LIHAATMVTAGVYLIARTHFLFLLTPG---ILYLVGLIGTLTILVSSISALVQKDIKRIL 308
Query: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG-YVGITLGGTELEKF 360
AYS++ QIG + LA LG +A A + H++ HAI KA++FL G + + K
Sbjct: 309 AYSTMSQIGYMFLA--LGVKAW-SAAITHLIMHAIFKALLFLSAGSLIKSCKNEKNIFKM 365
Query: 361 EGLGKRMPLTALALTIGAVSTVGVPLFNV-FWSKFRIIVATLQAGFIWPAILVLFASMVE 419
GL K++P ++ +G S V PL F+SK I+ + L++G I I+ LF S +
Sbjct: 366 GGLRKQLPFLYISFIVGGASLVSFPLITAGFYSKGNILFSVLKSGCIDFFIIGLFCSFLT 425
Query: 420 AVYYFRLVHTMWFSGSGERVKEGW------IVIFLLLLAVLVVAIGIYPTP 464
A+Y FR++ + F G + I +F+LLL L G Y +P
Sbjct: 426 AIYTFRMIFVI-FHGKNIHTADSSTNLQHNIPLFVLLL--LSTVFGSYISP 473
>emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 586
Score = 138 bits (343), Expect = 2e-31
Identities = 102/407 (25%), Positives = 187/407 (45%), Gaps = 29/407 (7%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGD 129
+G ++ + L ++ V + + + +V A+ + ++ F+ + A ++ GD
Sbjct: 55 LGQDILVAKADKLSIVFATVFTIMALIGTVYALHLSGAGQHMAAFVYVG-SALAVVFAGD 113
Query: 130 IFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLN 189
L++F E A + L +A A+ +Y+++ G L G+ L A G+L
Sbjct: 114 YLTLYLFWEGMAFASAYLVFAQGGRQAIRAAFRYLMVHVTGGVVLLGGILLHGAAAGSLL 173
Query: 190 MAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVV 249
+ P+ A G L++ G + A + PLNAW DAY A V SAF
Sbjct: 174 FGPVE------GPLGA--GAYLILAGFLLNAAVPPLNAWLTDAYPEATVTGAVFMSAFTT 225
Query: 250 KAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQI 309
K +Y +AR + L++ + T+ ++ + A+ + D +R++AY + Q+
Sbjct: 226 KTAVYVLARAF----------PGIELLVWLGTVMALYGVIYAVLENDCRRLLAYHIVSQV 275
Query: 310 GLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPL 369
G + +GT+ V+ H H + K ++F+G G V G +L + GL K MPL
Sbjct: 276 GYMVAGIGIGTELAVNGATSHAFAHILYKGLLFMGAGAVIYVTGRRKLTELGGLYKAMPL 335
Query: 370 TALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYY----FR 425
T IGA + P F+ F SK ++ A AG A+++L +M + + +
Sbjct: 336 TVALYMIGAFAISAFPFFSGFVSKSMVVAA---AGQDHRALVMLALTMASSGTFLHTGLK 392
Query: 426 LVHTMWFS---GSGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEIV 469
L + M+F G R G ++ + + A L +AIG++P P + ++
Sbjct: 393 LPYYMFFGTDRGLQAREPPGNMLAAMGMAAALCIAIGVFPGPLYALL 439
>pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM2 -
Aquifex aeolicus >gi|2983795|gb|AAC07353.1| (AE000737)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 501
Score = 137 bits (342), Expect = 3e-31
Identities = 117/440 (26%), Positives = 198/440 (44%), Gaps = 52/440 (11%)
Query: 49 FYEVYTTGKPIIIMAGGWRPPVGINLYIGP--FAALFVLIIAVVSFITAVFSVKAVKVEP 106
FYE YT K + G+ L +G + L + +VS I ++S+ K++
Sbjct: 65 FYEEYTILKEL-----------GVKLSLGMDGLSLLMYFLTTLVSLIAVIWSIGDEKIKH 113
Query: 107 -IDKYAMLFLLLMLGATGMIATGDIFNLFVFMEIT--------AITAYALTAYNKTGEAA 157
+ +Y + FLL G+ T ++ +VF E+T I Y L Y+
Sbjct: 114 RLKEYYIAFLLTESFVIGVFTTFNLIVFYVFYELTLLPMLFVIGIWGYKLRLYS------ 167
Query: 158 EASMKYIVLGGIGSSFFLIGVALL----YGATGTLNMAHLAELSTSINPIVAQVGLALVI 213
+ K+ V I S F L+G+A + Y G+ +L L+ +I P ++ L L+
Sbjct: 168 --AYKFFVYIFISSLFLLLGIASISTYHYKMNGSFTFEYLELLNLNI-PNGFEIFLFLLF 224
Query: 214 F-GLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQKANGWSSV 272
F AV+ + P + W PDA+ AP +V+ +A ++K G YA+ R L +
Sbjct: 225 FIAFAVKTPIVPFHTWLPDAHGEAPTAGSVVLAAILLKMGTYALVRFNIGLFP----DAA 280
Query: 273 LRL---VLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVF 329
L L ++ + ++I A + Q ++KR +AYSS+ +G + A L G+ A +
Sbjct: 281 LELSPYLVALGIYSIIMASWMTISQTNIKRFVAYSSVSHMGFVVTAAFLLNMEGLRASII 340
Query: 330 HMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNV 389
M H + A +F+ GY+ L G K MPL A A + +G+P +
Sbjct: 341 EMFAHGLTSAGLFMVAGYIYNKLHTFNFASLRGAIKFMPLFATITAATAFAAMGLPGGSS 400
Query: 390 FWSKFRIIVATLQAGFIWP-AILVLFASMVEAVYYFRLVHTMWFSGSGERV------KEG 442
FW KF I+A + + P A LV+FA+ A Y + T++ E V G
Sbjct: 401 FWGKFLTILAARE--YSTPLAFLVVFAAFFSAAYVLYFLKTLYLDVREESVLIHFKDVSG 458
Query: 443 WIVIFLLLLAVLVVAIGIYP 462
+ ++ L++ + V+ +G P
Sbjct: 459 YPLVAFLMIVIPVLLVGFVP 478
>gi|9838450 NADH dehydrogenase subunit 2 [Beta vulgaris]
>gi|9087312|dbj|BAA99456.1| (AP000397) NADH
dehydrogenase subunit 2 [Beta vulgaris]
Length = 488
Score = 137 bits (342), Expect = 3e-31
Identities = 94/372 (25%), Positives = 173/372 (46%), Gaps = 30/372 (8%)
Query: 124 MIATGDIFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLY 182
MI+ D+ +++ +E ++ Y + A + E + EA KY++LG S L G +++Y
Sbjct: 128 MISAHDLIAMYLAIEPQSLCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIY 187
Query: 183 GATGTLNMAHLAELSTSINPIVAQ-----VGLALVIFGLAVEAELFPLNAWAPDAYQAAP 237
G+TG + LA++ T + +G+ + G + P + WAPD Y+ +P
Sbjct: 188 GSTGATHFDQLAKILTGYEITGVRSSGIFMGILFIAVGSLFKITAVPFHMWAPDIYEGSP 247
Query: 238 HPITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDV 297
P+T FS + + A IL + + +++ ++ + ++I L+A+ Q V
Sbjct: 248 TPVTAFFS---IAPKISISANILRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKV 304
Query: 298 KRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTEL 357
KR++A+SSIG +G I FS GT G+ + +L + A M + + L T +
Sbjct: 305 KRLLAHSSIGHVGYIRTGFSCGTIEGIQS----LLIGLFIYASMTIDAFAIVSALRQTRV 360
Query: 358 EKFEGLG---KRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLF 414
+ LG K P++A+ +I S G+P F SKF + A L G + A + +
Sbjct: 361 KYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVV 420
Query: 415 ASMVEAVYYFRLVHTMWFSGSGERVKEGWIV---------IFLLLLAVLVVAIGIYPTPA 465
S++ YY RLV M+F WI+ + L + + + + YP+P
Sbjct: 421 TSVIGCFYYIRLVKRMFFD-----TPRTWILYEPMDRDKSLLLAMTSSFITSSFPYPSPL 475
Query: 466 WEIVKRAGSDIF 477
+ + + ++
Sbjct: 476 FSVTHQMALSLY 487
>pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Sarcophyton
glaucum mitochondrion >gi|4091914|gb|AAC99648.1|
(AF064823) NADH dehydrogenase subunit 5 [Sarcophyton
glaucum]
Length = 605
Score = 137 bits (341), Expect = 3e-31
Identities = 125/478 (26%), Positives = 234/478 (48%), Gaps = 41/478 (8%)
Query: 7 LLIALPLISAFFVPV----LKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIM 62
L+I +PL+SA + L R SL+ +L++ + + I +FYE+ G + I
Sbjct: 4 LVILIPLLSAVGSGLGGRYLGRKGASLLSSLWVLVSSLLSFI---LFYEILINGSTVYIE 60
Query: 63 AGGWRPP----VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLF 114
G W L A+ ++++ +S + V+S ++ +P Y LF
Sbjct: 61 LGRWIESDLLITNFGLQFDEVTAVMLIVVTTISGLVHVYSTSYMRDDPHLPRFMSYLSLF 120
Query: 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSF 173
ML +I + + LF+ E + +Y L + T +A +A++K +++ IG
Sbjct: 121 TFFMLV---LITSNNYLQLFIGWEGVGLCSYLLINFWFTRIQANKAAIKAMLINRIGDIG 177
Query: 174 FLIGVALLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAY 233
++ + L++ G L+ + T+ + + + L+I + A+L L+ W PDA
Sbjct: 178 LMLAIILIWKEFGVLDYCSIFSALTA-SSACTWICILLIIGAVGKSAQL-GLHTWLPDAM 235
Query: 234 QAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSAL 292
+ P P++ + +A +V AG++ + R + + + ++ LV +LT FA L
Sbjct: 236 EG-PTPVSALIHAATMVTAGVFLIIRSAPIFDYSPTATIIVGLV---GSLTAFFAATVGL 291
Query: 293 RQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG-YVGIT 351
Q D+K++IAYS+ Q+G + +A GT + + ++H+L HA KA++FLG G +
Sbjct: 292 VQSDIKKVIAYSTCSQLGYMVVA--CGTSSSF-SSLYHLLTHAFFKALLFLGAGSIIHAL 348
Query: 352 LGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAI- 410
L +L K G+ + +PLT + + IG++S G P + F+SK I+ T G+ I
Sbjct: 349 LDEQDLRKMGGIVRGLPLTYVLMLIGSLSLAGFPYLSGFYSKDLILELTYN-GYCLITIY 407
Query: 411 -LVLFASMVEAVYYFRLVHTMWFSG------SGERVKEG-WIVIF-LLLLAVLVVAIG 459
L + + A Y FRL++ + S S + ++E W ++ LL+LA+ + +G
Sbjct: 408 WLASITAFLTAFYSFRLIYLSFLSRPNLTHLSAQHLQEADWNLLGPLLVLAIGSILVG 465
>gi|11467787 subunit 2 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880716|gb|AAD54809.1|AF137379_32
(AF137379) subunit 2 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 506
Score = 137 bits (341), Expect = 3e-31
Identities = 102/394 (25%), Positives = 173/394 (43%), Gaps = 24/394 (6%)
Query: 82 LFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATG--DIFNLFVFMEI 139
+F IIA+ + + S+ V+ L L+ GM+ G D+ +FV +E
Sbjct: 87 VFRAIIAMSCVLCILLSIDYVESTGTAPSEFLVLIATASLGGMLVAGSNDLLMMFVSLET 146
Query: 140 TAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGATG---TLN-MAHLA 194
+ +Y LT Y K + EAS+KY+++G S FL G++ +YG +G LN +AH
Sbjct: 147 LGLASYLLTGYMKRDVRSNEASLKYLLVGAASSGLFLYGISWMYGISGGHMELNSIAHAI 206
Query: 195 ELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLY 254
+ L L+ G+ + P + W PD YQ +P P+ S AG
Sbjct: 207 VSLDETKTTTCALALVLMTVGVGFKVAAAPFHQWTPDVYQGSPTPVVAFLSVGSKAAGFI 266
Query: 255 AMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIAL 314
R+ L + L + I++ L++I A+ Q +KRM+ YSS+GQ G++ +
Sbjct: 267 LAVRMCTTLFPSFNTEWHL-IFTILSILSMIVGNFIAVTQTSLKRMLGYSSVGQAGVMMI 325
Query: 315 AFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALAL 374
+ G + + ++L + + F V G+ G +++ + GL R P AL L
Sbjct: 326 GMLTDSPDGYASLIVYLLIYLFMNLGAFACVILFGLRTGTDQIQDYSGLLARDPFLALCL 385
Query: 375 TIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSG 434
++ +S G+P F+ K + +A AG + L S+V YY +V M
Sbjct: 386 SLCLLSLGGIPPLAGFFGKMYLFLAAWDAGQYSLVWVGLITSVVSIYYYLSVVKIMLVPA 445
Query: 435 SGERVKEGWIVIFLLLLAVLVVAIGIYPTPAWEI 468
+ E + +A+ YP AW +
Sbjct: 446 TQE----------------MSLAVREYPRRAWSL 463
>gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1]
Length = 594
Score = 137 bits (341), Expect = 3e-31
Identities = 123/476 (25%), Positives = 204/476 (42%), Gaps = 65/476 (13%)
Query: 13 LISAFFVPVLKR--------IKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAG 64
L++A VP L R + + ++PY+ L+ TG + +
Sbjct: 13 LVAALLVPFLSRRTGHALGAVASAAVVPYVWLVA----------------TGAHLPVKLF 56
Query: 65 GWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGM 124
G+ I L + PF+ L LI ++ V+S + +A+ ++ LGA
Sbjct: 57 GFH---AILLNVDPFSTLMGLIFGLIGAAGVVYSYASDAENIQTAFALGYVGTSLGA--- 110
Query: 125 IATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGA 184
+ GD L F E+ A T+ L ++ G+A A +Y + GIG + L + +
Sbjct: 111 VFAGDWLTLIFFWELMAATS-TLLVWHYGGKAVRAGFRYALAHGIGGTLLLAAIIWQFAE 169
Query: 185 TGTLNMAHL------AELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPH 238
TGT + A L+ SI P++A +G+ V L+AW PD Y
Sbjct: 170 TGTFLFGSVPGGPETAGLAGSIAPVLAALGIG-------VNVGFVGLHAWLPDTYPRPHI 222
Query: 239 PITVMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
+V F K G+Y + R+ + N V M +F + AL Q D++
Sbjct: 223 AASVFLCVFTTKTGVYGLYRVFP--EHGN------MAVAYMGGAMAVFGAMMALFQNDMR 274
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVF-HMLNHAIVKAMMFLGVGYVGITLGGTEL 357
R+++Y Q+G + +G+ A AG F H+ NH + K ++F+ G + G L
Sbjct: 275 RLLSYHIQSQVGYMVAGVGIGS-ALAQAGAFAHVFNHILYKGLLFMTAGVIVYRTGEERL 333
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT--------LQAGFIWPA 409
K GL + MP+TA A T+ A+S G P FN F SK II A+ F
Sbjct: 334 PKLGGLAREMPITAGAFTVAALSISGFPGFNGFVSKGIIISASHYMHAPLVTVGEFTGLQ 393
Query: 410 ILVLFASMVEAVYYFRLVHTMWFSGSGE-RVKEG--WIVIFLLLLAVLVVAIGIYP 462
+L+L + + + + + +F GS + VK+ ++ +A L + G+YP
Sbjct: 394 VLLLLGGVGTFMSFIKFGYYAFFHGSYDGTVKDANRGQAAAMVAIAALCLGYGLYP 449
>gb|AAF08167.1| (AF130211) NADH dehydrogenase subunit F [Phlox drummondii]
Length = 774
Score = 136 bits (340), Expect = 4e-31
Identities = 98/383 (25%), Positives = 185/383 (47%), Gaps = 31/383 (8%)
Query: 76 IGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGAT---GMIATGDIFN 132
I P ++ ++I V + ++S + + Y F + +T G++ + ++
Sbjct: 89 IDPLTSIMSILITCVGIMVLIYSDNYMSYD--QGYLRFFAYMSFFSTSMLGLVTSSNLIQ 146
Query: 133 LFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMA 191
+++F E+ + +Y L + T +A A K + +G L+G+ Y TG+
Sbjct: 147 IYIFWELVGMCSYLLIGFWFTRTLSANACQKAFITNRVGDFGLLLGILGFYWITGSFEFR 206
Query: 192 HLAEL------STSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF- 244
L E+ + +N + + L+ G ++ FPL+ W PDA + P PI+ +
Sbjct: 207 DLFEIFNNLIYNNEVNTLFVFLCALLLFAGAVAKSAQFPLHVWLPDAMEG-PTPISALIH 265
Query: 245 SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYS 304
+A +V AG++ +AR+L L ++ + ++ +TV AL Q+D+K+ +AYS
Sbjct: 266 AATMVAAGIFLVARLLPLFIVI---PYIMHFISLIGIITVFLGATLALAQKDIKKGLAYS 322
Query: 305 SIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVG--------YVGITLGGTE 356
++ Q+G + LA +G+ +FH++ HA KA++FLG G VG + ++
Sbjct: 323 TMSQLGYMMLALGMGSYR---TALFHLITHAYSKALLFLGSGSLIHSMETVVGYSPNKSQ 379
Query: 357 -LEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPAILVLFA 415
+ GL K +P+T ++ +G +S G+P FWSK I+ T I+ AI+
Sbjct: 380 NMVLMGGLTKYVPITKMSFLVGTLSLCGIPPLACFWSKDEILNDTWLYSSIF-AIIAWST 438
Query: 416 SMVEAVYYFRLVHTMWFSGSGER 438
+ + A Y FR ++ + F G R
Sbjct: 439 AGLTAFYMFR-IYLLTFEGHFNR 460
>pir||D81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain N Cj1566c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968983|emb|CAB73554.1| (AL139079) NADH
dehydrogenase I chain N [Campylobacter jejuni]
Length = 462
Score = 136 bits (340), Expect = 4e-31
Identities = 95/375 (25%), Positives = 177/375 (46%), Gaps = 12/375 (3%)
Query: 85 LIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITA 144
L+I SF+ + K E ++ LFL ++ M+++ ++ +F+ +E +++
Sbjct: 87 LVILCFSFLYLLMQ----KEENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLAL 142
Query: 145 YALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALLYGATGTLNMAHLAELSTSINPIV 204
Y L A + A +++KY + +G+ FF++ VA +Y TGTL+++ L
Sbjct: 143 YTLIAMRGSDNAISSAIKYFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDP 202
Query: 205 AQVGLALVIFGL-AVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLL 263
+G ++IF L A++ L P + W D Y AA H V F + V K + + L+
Sbjct: 203 MLLGAGVMIFVLCAIKLSLAPFHFWLKDVYYAA-HTNLVAFISVVPKVAMLVVVIRLFDF 261
Query: 264 QKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALA-FSLGTQA 322
G+ + ++++A +++ +AL Q ++K+M AYSS+ L+ +A L +
Sbjct: 262 LNNTGFEYI---IIVLAIFSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQ 318
Query: 323 GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTV 382
D + + + + A V + E GL + PL A L+I +S
Sbjct: 319 NFDGILLAIFGYWTLFAFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLA 378
Query: 383 GVPLFNVFWSKFRIIVATLQAGFIWPAILVLFASMVEAVYYFR-LVHTMWFSGSG-ERVK 440
G+P F VFW KF I+ + G+ + A+ V +S++ Y + L+H ++ +K
Sbjct: 379 GIPPFGVFWGKFMILNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVHNIK 438
Query: 441 EGWIVIFLLLLAVLV 455
+I F+L V V
Sbjct: 439 FSFIQNFILAFCVCV 453
>gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Prototheca wickerhamii]
>gi|7432521|pir||T11917 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Prototheca wickerhamii
mitochondrion >gi|467849|gb|AAD12636.1| (U02970) NADH
deydrogenase (ubiquinone), subunit 5 [Prototheca
wickerhamii]
Length = 689
Score = 136 bits (339), Expect = 6e-31
Identities = 127/486 (26%), Positives = 226/486 (46%), Gaps = 48/486 (9%)
Query: 7 LLIALPLISAFFVPVLKRIK----QSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIM 62
L++ LPL+++ F + R +L+ + ++ + + +A FYEV +G I
Sbjct: 17 LVLLLPLLASIFAGLFGRYLGFRGATLLTTSSVFLSFVISCVA---FYEVALSGVTCSIE 73
Query: 63 AGGW----RPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP----IDKYAMLF 114
W Y + +L+I +S + ++S+ ++ +P Y +F
Sbjct: 74 FMPWFLSEMFDASWGFYFDSLTVIMLLVITSISTLVHLYSISYMEADPHLPRFMSYLSIF 133
Query: 115 LLLMLGATGMIATGDIF-NLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSS 172
ML M+ T D F +F E + +Y L + T +A++AS+K +++ +G
Sbjct: 134 TFFML----MLVTSDNFLQMFFGWEGVGLASYLLINFWFTRLQASKASIKAMLVNRVGDF 189
Query: 173 FFLIGVALLYGATGTLNM-------AHLAE---LSTSINPIVAQVGLALVIFGLAVEAEL 222
+GV + T++ AH +E + ++ V L+ G ++
Sbjct: 190 GLALGVMATFSVFKTVDFYTVFALAAHQSEAVLVFCNVEFHALTVICILLFVGAVGKSAQ 249
Query: 223 FPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMAT 281
L+ W PDA + P P++ + +A +V AG++ +AR L + A L +V I+
Sbjct: 250 LGLHTWLPDAMEG-PTPVSALIHAATMVTAGVFMIARCSPLFEYA---PKALVVVAIVGA 305
Query: 282 LTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMM 341
+T FA + + Q D+KR+IAYS+ Q+G + A + GVFH++NHA KA++
Sbjct: 306 MTCFFAATTGVVQNDLKRVIAYSTASQLGYMIFACGISQYT---VGVFHLMNHAFFKALL 362
Query: 342 FLGVGYVGITLGG-TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT 400
FL G V +L ++ K G+ K +P T ++IG+ S +G P F+SK +I+
Sbjct: 363 FLSAGSVIHSLADQQDMRKMGGMAKLLPFTFAMMSIGSFSLIGFPFLTGFYSK-DVILEV 421
Query: 401 LQAGFIWPA-ILVLFASMVEA---VYYFRLVHTMWFSGSG---ERVKEGWIVIFLLLLAV 453
A + W A LF S+ A Y FRL+ + + + VK FLL L +
Sbjct: 422 AFARYTWDANFAYLFGSVCVAFTSYYSFRLLFLTFIAPTNAYKSTVKIAHDAPFLLALPL 481
Query: 454 LVVAIG 459
+++IG
Sbjct: 482 FLLSIG 487
>sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
12) (NUO12) >gi|7432511|pir||D64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain L - Escherichia coli
>gi|1788614|gb|AAC75338.1| (AE000317) NADH dehydrogenase
I chain L [Escherichia coli K12]
>gi|1799638|dbj|BAA16106.1| (D90859) NADH dehydrogenase
I chain nuoL [Escherichia coli]
Length = 613
Score = 136 bits (339), Expect = 6e-31
Identities = 115/412 (27%), Positives = 204/412 (48%), Gaps = 31/412 (7%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIA--- 126
+G NL + + + ++ V F+ +++ ++ E + Y+ F L M+
Sbjct: 75 IGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGE--EGYSRFFAYTNLFIASMVVLVL 132
Query: 127 TGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGAT 185
++ +++ E + +Y L + T + A+MK V+ +G F + +LY
Sbjct: 133 ADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNEL 192
Query: 186 GTLNMAHLAELSTSI----NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
GTLN + EL+ + N ++ L L+ + A+L PL W DA A P P++
Sbjct: 193 GTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQL-PLQTWLADA-MAGPTPVS 250
Query: 242 VMF-SAFVVKAGLYAMARI--LYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
+ +A +V AG+Y +AR L+L+ VL LV I+ +T++ A +AL Q D+K
Sbjct: 251 ALIHAATMVTAGVYLIARTHGLFLMTP-----EVLHLVGIVGAVTLLLAGFAALVQTDIK 305
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE-L 357
R++AYS++ QIG + LA LG QA DA +FH++ HA KA++FL G V + + +
Sbjct: 306 RVLAYSTMSQIGYMFLA--LGVQAW-DAAIFHLMTHAFFKALLFLASGSVILACHHEQNI 362
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNV-FWSKFRIIVATLQAGFIWPAILVLFAS 416
K GL K +PL L +G + +PL F+SK I+ + G I + L +
Sbjct: 363 FKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLVGA 422
Query: 417 MVEAVYYFRLVHTMW------FSGSGERVKEGWIVIFLLLLAVLVVAIGIYP 462
+ ++Y FR++ ++ + + + V +I LL+L+ V A+ + P
Sbjct: 423 FMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPP 474
>gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea]
>gi|7432547|pir||T11231 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - red alga (Porphyra purpurea)
mitochondrion >gi|4106943|gb|AAD03110.1| (AF114794) NADH
dehydrogenase subunit 5 [Porphyra purpurea]
Length = 677
Score = 136 bits (339), Expect = 6e-31
Identities = 127/493 (25%), Positives = 236/493 (47%), Gaps = 52/493 (10%)
Query: 7 LLIALPLISAFFVPV----LKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIM 62
L+IALPL+ + L R ++ +++ L + ++ FYEV G P I
Sbjct: 4 LIIALPLLGTLITGLGGRWLGREGSNIFSTTCVILCLFLSLVS---FYEVGLCGVPCYIS 60
Query: 63 AGGWRPPVGINLYIG----PFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLM 118
W +N+ G +++I +S + ++S++ ++ +P M FL +
Sbjct: 61 ISPWISSGALNISWGFLFDSLTTTMLVVITSISSLVHIYSIQYMEYDPHCPRFMSFLEIF 120
Query: 119 LGATGMIATGDIF-NLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLI 176
++ T D F +F+ E + +Y L + T A +A++K +++ +G +
Sbjct: 121 TFFMLLLVTADNFVQMFLGWEGVGLASYLLINFWYTRLCANQAAVKALIVNRVGDFGLSL 180
Query: 177 GVALLYGATGTLN---MAHLAELSTS---------INPIVAQVGLALVIFGLAVEAELFP 224
G+ ++ G+++ + LA++ ++ IN + +G+ L+I + A+L
Sbjct: 181 GIFTIFFLFGSVDYEVVFSLADVYSNHSIYIFGNYINTLTL-IGVFLLIGAVGKSAQL-G 238
Query: 225 LNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLT 283
L+ W PDA + P P++ + +A +V AG++ + R L+ + +VL L+ I+ + T
Sbjct: 239 LHTWLPDAMEG-PTPVSALIHAATMVTAGVFLIVRCSPLINLS---PNVLFLITILGSST 294
Query: 284 VIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFL 343
FA + + Q D+KR+IAYS+ Q+G + L + + G+FH++NHA KA++FL
Sbjct: 295 AFFASIVGVFQNDIKRVIAYSTCSQLGYMVFVCGL---SYYNVGMFHLVNHAFFKALLFL 351
Query: 344 GVGYVGITLGG-TELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQ 402
G V L ++ + L +P+T A+ IG++S G P F+SK II T
Sbjct: 352 SAGSVIHALSNEQDMRRMGSLVYNLPITYTAMLIGSLSLAGFPFLTGFYSKDLIIEITQI 411
Query: 403 AGF--------IWPAILVLFASMVEAVYYFRLVHTMW------FSGSGERVKEG--WIVI 446
+ + I+ L + A Y FRLV + + S + + E +IVI
Sbjct: 412 SYYSNLYTTYGIFACWLANISVFFTAFYTFRLVFLTFIKNNNSYKSSMDNIHESPLFIVI 471
Query: 447 FLLLLAVLVVAIG 459
L+LLA+ + IG
Sbjct: 472 PLILLAIASILIG 484
>pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli
>gi|397909|emb|CAA48371.1| (X68301) NADH dehydrogenase
I, subunit nuoL [Escherichia coli]
Length = 613
Score = 136 bits (338), Expect = 8e-31
Identities = 115/412 (27%), Positives = 204/412 (48%), Gaps = 31/412 (7%)
Query: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLLLMLGATGMIA--- 126
+G NL + + + ++ V F+ +++ ++ E + Y+ F L M+
Sbjct: 75 IGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGE--EGYSRFFAYTNLFIASMVVLVL 132
Query: 127 TGDIFNLFVFMEITAITAYALTAYNKTG-EAAEASMKYIVLGGIGSSFFLIGVALLYGAT 185
++ +++ E + +Y L + T + A+MK V+ +G F + +LY
Sbjct: 133 ADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLRFALFILYNEL 192
Query: 186 GTLNMAHLAELSTSI----NPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
GTLN + EL+ + N ++ L L+ + A+L PL W DA A P P++
Sbjct: 193 GTLNFREMVELAPAHLADGNNMLMWATLMLLGGAVGKSAQL-PLQTWLADA-MAGPTPVS 250
Query: 242 VMF-SAFVVKAGLYAMARI--LYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVK 298
+ +A +V AG+Y +AR L+L+ VL LV I+ +T++ A +AL Q D+K
Sbjct: 251 ALIHAATMVTAGVYLIARTHGLFLMTP-----EVLHLVGIVGAVTLLLAGFAALVQTDIK 305
Query: 299 RMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTE-L 357
R++AYS++ QIG + LA LG QA DA +FH++ HA KA++FL G V + + +
Sbjct: 306 RVLAYSTMSQIGYMFLA--LGVQAW-DAAIFHLMTHAFFKALLFLASGSVILACHHEQNI 362
Query: 358 EKFEGLGKRMPLTALALTIGAVSTVGVPLFNV-FWSKFRIIVATLQAGFIWPAILVLFAS 416
K GL K +PL L +G + +PL F+SK I+ + G I + L +
Sbjct: 363 FKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLVGA 422
Query: 417 MVEAVYYFRLVHTMW------FSGSGERVKEGWIVIFLLLLAVLVVAIGIYP 462
+ ++Y FR++ ++ + + + V +I LL+L+ V A+ + P
Sbjct: 423 FMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTFVGALIVPP 474
>gi|11465871 NADH dehydrogenase subunit 2 [Ochromonas danica]
>gi|10505204|gb|AAG18386.1|AF287134_11 (AF287134) NADH
dehydrogenase subunit 2 [Ochromonas danica]
Length = 504
Score = 136 bits (338), Expect = 8e-31
Identities = 102/433 (23%), Positives = 205/433 (46%), Gaps = 45/433 (10%)
Query: 73 NLYIGPFAALFV-LIIAVVSFITAVFSVKAVKVEPIDKYAM--LFLLLMLGATGMIATGD 129
N+++ + +F+ ++++S + KA+ ++ ++ + LFLL + M+++ +
Sbjct: 69 NIFVNDNSIIFLKFTLSLISLGCIIICKKALLLQKLNLFEFFPLFLLALFALLIMLSSEN 128
Query: 130 IFNLFVFMEITAITAYALTAYNKTGE-AAEASMKYIVLGGIGSSFFLIGVALLYGATGTL 188
+ + ++ ME+ A+ Y L ++N+T +AEA +KY + G S +L+G +++YG GTL
Sbjct: 129 LISFYLAMEMQALCFYVLASFNRTSVFSAEAGLKYFISGSFMSGVYLLGSSIIYGCLGTL 188
Query: 189 NMAHLAELSTSIN-------PIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPIT 241
+++ + L S N + ++G L+IF L + P + W+PD Y+ +P T
Sbjct: 189 DLSSI-NLLLSFNIENNVYLEYLLKIGFLLIIFTLLFKIASAPFHFWSPDVYEGSPLSST 247
Query: 242 VMFSAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMI 301
++F A + K L+ I L+ + + L+LI +++ AL Q+ +K++I
Sbjct: 248 IVF-AILPKISLFYFF-IKLLISTGIFFEDISDLLLIFGLCSILIGTFYALNQKRIKKLI 305
Query: 302 AYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEK-- 359
YSSI Q+G + SL T + F + + I +++ GYV + + +
Sbjct: 306 IYSSIAQVGFLVSILSLQTFESFSSLFFFLFIYLITSIVLW---GYVVFFFNSSTIVRNF 362
Query: 360 ------------FEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIW 407
F K L +++ S G+P F F SK I + + +G+ +
Sbjct: 363 SNKGLVSIYISDFSNFAKINLLWCVSILFIFFSIGGIPPFVGFISKMIITLQFVDSGYFF 422
Query: 408 PAILVLFASMVEAVYYFRLVHTMWFSGS------------GERVKEGWIVIFLLLLAVLV 455
A +L S + YY R+V +F + + ++++ L LL L+
Sbjct: 423 VASFLLIISAISVYYYIRIVKISFFESNKLIRTLPMHVVFNNEINIEYLLLSLFLL--LL 480
Query: 456 VAIGIYPTPAWEI 468
+ + ++PTP + I
Sbjct: 481 LLLFLFPTPLFLI 493
>pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain 26695)
>gi|2314436|gb|AAD08315.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO12 subunit (NQO12) [Helicobacter
pylori 26695]
Length = 612
Score = 135 bits (337), Expect = 1e-30
Identities = 128/512 (25%), Positives = 250/512 (48%), Gaps = 49/512 (9%)
Query: 2 SQVASLLIALPLISAFFVPVL----KRIKQSLIMPYLILITLIQTG---IAGWVF--YEV 52
S + S+++ LPLI A + + K + + +L++ I I W YE
Sbjct: 4 SSLLSVVLFLPLIGAIYAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEK 63
Query: 53 YTTGKPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKYA 111
Y I+ G ++ VG +L + A+ ++++ +VSF+ V+S+ ++ + ++Y
Sbjct: 64 YLFDW---IVVGNFK--VGFSLMLDNINAVMIVVVTLVSFLVHVYSIGYMEHDAGFNRYF 118
Query: 112 MLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTA--YNKTGEAAEASMKYIVLGGI 169
+ ++ + + LF+ E + +Y L Y+KT A AS++ V+ I
Sbjct: 119 SYLSGFVFSMLVLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKTS-ANNASIEAFVMNRI 177
Query: 170 GSSFFLIGVALLYGATGTLNMAHL-AELSTSINPIVAQVGLALVIFGLAVEAELFPLNAW 228
L+G+ L++ GTL + + L+ + ++ + + L I + A+ FP++ W
Sbjct: 178 TDLGMLMGIILIFWNFGTLQYKEVFSMLNNTDYSMLFYISVFLFIGAMGKSAQ-FPMHTW 236
Query: 229 APDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATL---TV 284
+A + P P++ + +A +V AG+Y + R L +S+V + +A L
Sbjct: 237 LANAMEG-PTPVSALIHAATMVTAGVYLVIRANPL------YSAVFEVGYFIACLGAFVA 289
Query: 285 IFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLG 344
+F AL +D+KR++AYS++ Q+G + +A LG A +FH+ HA K+++FLG
Sbjct: 290 LFGASMALVNKDLKRIVAYSTLSQLGYMFVAAGLGAYA---IALFHLFTHAFFKSLLFLG 346
Query: 345 VGYVGITL-GGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVAT--L 401
G V + ++ K L K M +TA+ + IG+V+ G+ F ++SK +I+ +
Sbjct: 347 SGNVMHAMEDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYFSKDKILEVAFGM 406
Query: 402 QAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVK-----EGWIVIFLLLLAVLVV 456
+W A+L+ ++ A Y FRL+ ++F+ + + ++++ +L L VL V
Sbjct: 407 HHHILWFALLI--GAIFTAFYSFRLIMLVFFAPKQHEINHPHEAQNFMLLSMLPLGVLAV 464
Query: 457 AIGIYPTPAWEIVKRAGSDIFAVANYVKNVPL 488
G + P + + + I +V Y+ VPL
Sbjct: 465 IAGFFEEPFFHFISQV---IPSVGEYL--VPL 491
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.143 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159871665
Number of Sequences: 2977
Number of extensions: 6305199
Number of successful extensions: 40551
Number of sequences better than 1.0e-10: 2555
Number of HSP's better than 0.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 2502
Number of HSP's that attempted gapping in prelim test: 31293
Number of HSP's gapped (non-prelim): 3023
length of query: 493
length of database: 189,106,746
effective HSP length: 54
effective length of query: 439
effective length of database: 156,788,448
effective search space: 68830128672
effective search space used: 68830128672
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)