BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2419 1046951 1047295 115 !not a gene!
         (115 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71057 hypothetical protein PH1158 - Pyrococcus horikoshii ...   149  7e-36

>pir||H71057 hypothetical protein PH1158 - Pyrococcus horikoshii
           >gi|3257575|dbj|BAA30258.1| (AP000005) 165aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 165
           
 Score =  149 bits (373), Expect = 7e-36
 Identities = 81/115 (70%), Positives = 92/115 (79%)

Query: 1   MLNSLAALKARTLAFSSSYSEESTPLVFPNSPRSDDISPKLPFNTVTPLSRISSATLVLS 60
           +LNSLAA     LA SS YS+ESTPLVFP+SP+  DISPKLPF+T TPL +IS  TLVL+
Sbjct: 2   VLNSLAAFIVNFLASSSPYSKESTPLVFPSSPKRADISPKLPFSTSTPLLKISRETLVLN 61

Query: 61  FVAPAPTGSRTMGFFISLAISTAFIMDFLHQESRVPIFITTASANPIISSSSSSA 115
            VAPAPTGS T+GF  S AIS AF +D LH ESRVPIF+TTASA+ IISSSSSSA
Sbjct: 62  LVAPAPTGSSTIGFPNSFAISVAFTIDLLHPESRVPIFMTTASASLIISSSSSSA 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.127    0.340 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36423257
Number of Sequences: 2977
Number of extensions: 1331131
Number of successful extensions: 3450
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3449
Number of HSP's gapped (non-prelim): 1
length of query: 115
length of database: 189,106,746
effective HSP length: 61
effective length of query: 54
effective length of database: 152,599,039
effective search space: 8240348106
effective search space used: 8240348106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)