BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2422 (PAB2422) DE:Hypothetical protein
         (257 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75099 hypothetical protein PAB2422 - Pyrococcus abyssi (st...   495  e-139
pir||H75097 polysaccharide biosynthesis related protein PAB0783 ...   255  5e-67

>pir||B75099 hypothetical protein PAB2422 - Pyrococcus abyssi (strain Orsay)
           >gi|5458607|emb|CAB50095.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 257
           
 Score =  495 bits (1262), Expect = e-139
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MFNLALTVLSIALVIATLGFQNALPREVAFYREREPSRVRDLISTALVIVAVNSLIWTAI 60
           MFNLALTVLSIALVIATLGFQNALPREVAFYREREPSRVRDLISTALVIVAVNSLIWTAI
Sbjct: 1   MFNLALTVLSIALVIATLGFQNALPREVAFYREREPSRVRDLISTALVIVAVNSLIWTAI 60

Query: 61  LFLEAGNISQVFKDARLAHALRIVVFALPFWALTAVIISISRGFGRVREQVYFQNIVYPT 120
           LFLEAGNISQVFKDARLAHALRIVVFALPFWALTAVIISISRGFGRVREQVYFQNIVYPT
Sbjct: 61  LFLEAGNISQVFKDARLAHALRIVVFALPFWALTAVIISISRGFGRVREQVYFQNIVYPT 120

Query: 121 VFMLFVVVGAFLKLPSAFVFGAYVATQVLTLLVLAFSAWRIKLFEFRVSLNLRLGSKLLK 180
           VFMLFVVVGAFLKLPSAFVFGAYVATQVLTLLVLAFSAWRIKLFEFRVSLNLRLGSKLLK
Sbjct: 121 VFMLFVVVGAFLKLPSAFVFGAYVATQVLTLLVLAFSAWRIKLFEFRVSLNLRLGSKLLK 180

Query: 181 LSVPLMLEGIAGFVMRWTDTLMLGYYRTSEVVGLYNAATPIVRVLPLFLNSVGIIYPSLA 240
           LSVPLMLEGIAGFVMRWTDTLMLGYYRTSEVVGLYNAATPIVRVLPLFLNSVGIIYPSLA
Sbjct: 181 LSVPLMLEGIAGFVMRWTDTLMLGYYRTSEVVGLYNAATPIVRVLPLFLNSVGIIYPSLA 240

Query: 241 AILYAQGKTTELSEYIN 257
           AILYAQGKTTELSEYIN
Sbjct: 241 AILYAQGKTTELSEYIN 257


>pir||H75097 polysaccharide biosynthesis related protein PAB0783 - Pyrococcus
           abyssi (strain Orsay) >gi|5458597|emb|CAB50085.1|
           (AJ248286) polysaccharide biosynthesis related protein
           [Pyrococcus abyssi]
           Length = 511
           
 Score =  255 bits (644), Expect = 5e-67
 Identities = 120/252 (47%), Positives = 177/252 (69%)

Query: 1   MFNLALTVLSIALVIATLGFQNALPREVAFYREREPSRVRDLISTALVIVAVNSLIWTAI 60
           +FNLALT+L+I+ ++ATLGF  +LPRE+  YRE+ P +V  LIST +++V   S+I  A 
Sbjct: 48  VFNLALTILTISFIVATLGFPTSLPREIPVYREKYPEKVNRLISTVILVVVATSIILMAF 107

Query: 61  LFLEAGNISQVFKDARLAHALRIVVFALPFWALTAVIISISRGFGRVREQVYFQNIVYPT 120
           LFL +  I++VFK+ +L   L+++  ALPF+ALT++++SIS+GFGRVRE+VYF NI YPT
Sbjct: 108 LFLGSQAIAEVFKEPKLVEPLKVISLALPFYALTSMLVSISQGFGRVREKVYFTNITYPT 167

Query: 121 VFMLFVVVGAFLKLPSAFVFGAYVATQVLTLLVLAFSAWRIKLFEFRVSLNLRLGSKLLK 180
           +F+ F  +G         V  AY  + V+TL ++ +   R+K+F   ++ +L +   LL 
Sbjct: 168 LFLAFATLGVIFGKSIKAVVIAYTLSWVVTLFLIVWDYSRVKIFTLELTFDLNIAKSLLT 227

Query: 181 LSVPLMLEGIAGFVMRWTDTLMLGYYRTSEVVGLYNAATPIVRVLPLFLNSVGIIYPSLA 240
            S+PL+L GI GFVM WTDTLM+GYY TS  VG+YN+ATP+ ++LP+FL S   +Y  ++
Sbjct: 228 FSLPLLLSGILGFVMTWTDTLMIGYYLTSREVGIYNSATPLAKMLPIFLASFSYLYMPIS 287

Query: 241 AILYAQGKTTEL 252
           + LYAQGK  E+
Sbjct: 288 SQLYAQGKVKEM 299


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.143    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80368321
Number of Sequences: 2977
Number of extensions: 2971163
Number of successful extensions: 9531
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9529
Number of HSP's gapped (non-prelim): 2
length of query: 257
length of database: 189,106,746
effective HSP length: 53
effective length of query: 204
effective length of database: 157,386,935
effective search space: 32106934740
effective search space used: 32106934740
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)