BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2425 (PAB2425) DE:Hypothetical protein
(209 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75049 hypothetical protein PAB2425 - Pyrococcus abyssi (st... 409 e-113
pir||H71111 hypothetical protein PH0663 - Pyrococcus horikoshii ... 347 5e-95
pir||G72472 hypothetical protein APE2424 - Aeropyrum pernix (str... 122 4e-27
gb|AAK40951.1| Conserved hypothetical protein [Sulfolobus solfat... 119 3e-26
emb|CAB57656.1| (Y18930) hypothetical protein [Sulfolobus solfat... 119 3e-26
sp|Q57639|Y175_METJA HYPOTHETICAL PROTEIN MJ0175 >gi|2128166|pir... 108 7e-23
gi|11499841 conserved hypothetical protein [Archaeoglobus fulgid... 92 4e-18
>pir||A75049 hypothetical protein PAB2425 - Pyrococcus abyssi (strain Orsay)
>gi|5458799|emb|CAB50286.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 209
Score = 409 bits (1040), Expect = e-113
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MKLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKL 60
MKLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKL
Sbjct: 1 MKLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKL 60
Query: 61 VKELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVG 120
VKELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVG
Sbjct: 61 VKELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVG 120
Query: 121 DFIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLVNIRQKQDQARYVLE 180
DFIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLVNIRQKQDQARYVLE
Sbjct: 121 DFIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLVNIRQKQDQARYVLE 180
Query: 181 RTLEDLTRAKINKRVEDKIEGLLNAGKDS 209
RTLEDLTRAKINKRVEDKIEGLLNAGKDS
Sbjct: 181 RTLEDLTRAKINKRVEDKIEGLLNAGKDS 209
>pir||H71111 hypothetical protein PH0663 - Pyrococcus horikoshii
>gi|3257071|dbj|BAA29754.1| (AP000003) 216aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 216
Score = 347 bits (881), Expect = 5e-95
Identities = 167/209 (79%), Positives = 195/209 (92%)
Query: 1 MKLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKL 60
MK+ E+IARIKEVLDEKD++REEALQ+TREIVRLSGDAIKAMHR ++ LARERLEKAS L
Sbjct: 1 MKINEVIARIKEVLDEKDAIREEALQITREIVRLSGDAIKAMHREDMELARERLEKASLL 60
Query: 61 VKELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVG 120
++ELK+KLK HEDLYY+GYVQTANQEFVEA LL+ YLT ++FP FEELGVPPQDYILG+G
Sbjct: 61 IEELKKKLKEHEDLYYSGYVQTANQEFVEATLLYRYLTNKDFPSFEELGVPPQDYILGIG 120
Query: 121 DFIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLVNIRQKQDQARYVLE 180
DFIGELRRHFLINLM+G+++VAE+ Y+FME+VYEEL+TLEYPKGLVNIRQKQDQARY+LE
Sbjct: 121 DFIGELRRHFLINLMQGKLDVAEDIYKFMENVYEELMTLEYPKGLVNIRQKQDQARYILE 180
Query: 181 RTLEDLTRAKINKRVEDKIEGLLNAGKDS 209
+TLEDLTRAKIN+ VE+KIEG LN +DS
Sbjct: 181 KTLEDLTRAKINRSVEEKIEGFLNVREDS 209
>pir||G72472 hypothetical protein APE2424 - Aeropyrum pernix (strain K1)
>gi|5106128|dbj|BAA81439.1| (AP000064) 220aa long
hypothetical protein [Aeropyrum pernix]
Length = 220
Score = 122 bits (302), Expect = 4e-27
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Query: 2 KLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKLV 61
KL +I + VL E+D REEA+++ R++VR SG A+ A+H+G L A L +A +
Sbjct: 13 KLRSVIDSAERVLSERDKAREEAIRLARDVVRYSGWAVTAVHKGSLEEAEGHLARAEEAA 72
Query: 62 KELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVGD 121
L+ L+ + DL AG+ A E+VEA L +T +EL VP YI G+GD
Sbjct: 73 GMLRSILEPYPDLMTAGFANNAFSEYVEARLFIDIITGRGLSSPDELRVPIVPYIQGLGD 132
Query: 122 FIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLV-NIRQKQDQARYVLE 180
+GELRR L + G A ME++Y EL +L+YP+ L+ +R K D AR +++
Sbjct: 133 LVGELRRLSLELVRRGEFRKAWSLLDIMEAIYLELRSLDYPEALLPGVRHKADVARRLVD 192
Query: 181 RT---LEDL-TRAKINKRVEDKIEGL 202
T L DL +R+++ R+++ ++ L
Sbjct: 193 DTKAMLADLESRSQLEYRLKEVLKRL 218
>gb|AAK40951.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 197
Score = 119 bits (295), Expect = 3e-26
Identities = 73/193 (37%), Positives = 106/193 (54%), Gaps = 2/193 (1%)
Query: 2 KLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKLV 61
K+ + I VL E+ RE L + RE++R G+ I H+G+ A ++ + A V
Sbjct: 5 KIKGYLNSISGVLQERFENRERVLMLARELIRYCGETISLSHKGKKEEALKKYQIAISKV 64
Query: 62 KELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVGD 121
E+++ + +L Y G V TA QE EA ++ S E +ELG+P YI G+ D
Sbjct: 65 SEIQKIIDSFPELLY-GDVGTAYQELAEASIVISLYFDVELKLSKELGIPDIYYISGIAD 123
Query: 122 FIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLV-NIRQKQDQARYVLE 180
IGE+RR L L + +I+ AE TY ME +YE L + EYPK LV +RQK D R +LE
Sbjct: 124 AIGEMRRRVLELLKKNKIDEAENTYNIMEELYELLWSFEYPKSLVPGLRQKIDTIRRLLE 183
Query: 181 RTLEDLTRAKINK 193
T D+ AK+ +
Sbjct: 184 ETNHDIFLAKLGR 196
>emb|CAB57656.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 197
Score = 119 bits (295), Expect = 3e-26
Identities = 73/193 (37%), Positives = 106/193 (54%), Gaps = 2/193 (1%)
Query: 2 KLAEIIARIKEVLDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKLV 61
K+ + I VL E+ RE L + RE++R G+ I H+G+ A ++ + A V
Sbjct: 5 KIKGYLNSISGVLQERFENRERVLMLARELIRYCGETISLSHKGKKEEALKKYQIAISKV 64
Query: 62 KELKEKLKGHEDLYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVGD 121
E+++ + +L Y G V TA QE EA ++ S E +ELG+P YI G+ D
Sbjct: 65 SEIQKIIDSFPELLY-GDVGTAYQELAEASIVISLYFDVELKLSKELGIPDIYYISGIAD 123
Query: 122 FIGELRRHFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLV-NIRQKQDQARYVLE 180
IGE+RR L L + +I+ AE TY ME +YE L + EYPK LV +RQK D R +LE
Sbjct: 124 AIGEMRRRVLELLKKNKIDEAENTYNIMEELYELLWSFEYPKSLVPGLRQKIDTIRRLLE 183
Query: 181 RTLEDLTRAKINK 193
T D+ AK+ +
Sbjct: 184 ETNHDIFLAKLGR 196
>sp|Q57639|Y175_METJA HYPOTHETICAL PROTEIN MJ0175 >gi|2128166|pir||H64321 hypothetical
protein MJ0175 - Methanococcus jannaschii
>gi|1590927|gb|AAB98160.1| (U67474) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 222
Score = 108 bits (266), Expect = 7e-23
Identities = 67/192 (34%), Positives = 108/192 (55%), Gaps = 11/192 (5%)
Query: 14 LDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKLVKELKEKLKGHED 73
L KDS+REE L+++REI R I+ +H+ + ++ E KL E+ EK+K
Sbjct: 28 LANKDSVREEILKLSREITRDCAMLIRKIHKSD-----DKDEFKDKL-NEISEKIKKLNS 81
Query: 74 LY----YAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELG-VPPQDYILGVGDFIGELRR 128
L + GY+ T QEFVEA+ L+ + P F+EL + ++YILG+ D IGELRR
Sbjct: 82 LATFPEFVGYLSTPQQEFVEALSLYMIKFDNKIPSFKELDFIKEENYILGLADVIGELRR 141
Query: 129 HFLINLMEGRIEVAEETYRFMESVYEELITLEYPKGLVNIRQKQDQARYVLERTLEDLTR 188
L + + E ++FME +YE L+ +Y + N+R+KQD +R +LE+T D+
Sbjct: 142 EVLEAMKNDNLAEVERYFKFMEDLYEFLMNFDYYHVVDNLRRKQDISRGILEKTHGDIVT 201
Query: 189 AKINKRVEDKIE 200
N ++ + ++
Sbjct: 202 FIQNLKLREHLK 213
>gi|11499841 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483232|pir||D69532 conserved hypothetical protein
AF2260 - Archaeoglobus fulgidus
>gi|2648256|gb|AAB88989.1| (AE000948) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 196
Score = 92.1 bits (225), Expect = 4e-18
Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 6/190 (3%)
Query: 14 LDEKDSLREEALQVTREIVRLSGDAIKAMHRGELALARERLEKASKLVKELKEKLKGHED 73
L+E ++ REE L+V RE+ S +I +H G++ A + L+KA +L++++K + E
Sbjct: 10 LEELEAAREELLKVLREMRIHSTKSIALIHAGKVEEAEQELKKAIELLEKVKAYREYPEI 69
Query: 74 LYYAGYVQTANQEFVEAMLLFSYLTKEEFPGFEELGVPPQDYILGVGDFIGELRRHFLIN 133
+Y A QE VEA + F EF +L V P ++ G D +GELRR+ L
Sbjct: 70 YFYL--CNDAMQELVEA-IAFKNAISGEFTFEIDLEVTPAAFLNGFADAVGELRRYALTK 126
Query: 134 LMEGRIEVAEETYRFMESVYEELITL-EYPKGLVN-IRQKQDQARYVLERTLEDLTRAKI 191
L+EG + AE ME +YE L+ +P LV+ +R+K D AR +ERT D AK+
Sbjct: 127 LIEGDFKSAERMLEVMEKIYERLMEFTTFPDKLVSGLRKKLDVARGGIERTKSDYIAAKV 186
Query: 192 NKRVEDKIEG 201
R+ + + G
Sbjct: 187 -ARLNESLGG 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.368
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69841428
Number of Sequences: 2977
Number of extensions: 2850672
Number of successful extensions: 12244
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12230
Number of HSP's gapped (non-prelim): 7
length of query: 209
length of database: 189,106,746
effective HSP length: 59
effective length of query: 150
effective length of database: 153,796,013
effective search space: 23069401950
effective search space used: 23069401950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)