BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2435 (PAB2435) DE:Hypothetical protein
(166 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75181 hypothetical protein PAB2435 - Pyrococcus abyssi (st... 331 3e-90
pir||B71033 hypothetical protein PH1554 - Pyrococcus horikoshii ... 328 3e-89
pir||B69088 conserved hypothetical protein MTH1654 - Methanobact... 137 6e-32
gi|11498625 A. fulgidus predicted coding region AF1020 [Archaeog... 124 5e-28
emb|CAC12233.1| (AL445066) conserved hypothetical protein [Therm... 110 8e-24
gb|AAG20410.1| (AE005113) Vng2296c [Halobacterium sp. NRC-1] 91 6e-18
pir||F75015 hypothetical protein PAB1089 - Pyrococcus abyssi (st... 78 6e-14
pir||D71456 hypothetical protein PH0306 - Pyrococcus horikoshii ... 76 2e-13
>pir||A75181 hypothetical protein PAB2435 - Pyrococcus abyssi (strain Orsay)
>gi|5458038|emb|CAB49528.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 166
Score = 331 bits (840), Expect = 3e-90
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE 60
MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE
Sbjct: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE 60
Query: 61 TVAMILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRGI 120
TVAMILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRGI
Sbjct: 61 TVAMILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRGI 120
Query: 121 NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY 166
NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY
Sbjct: 121 NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY 166
>pir||B71033 hypothetical protein PH1554 - Pyrococcus horikoshii
>gi|3257983|dbj|BAA30666.1| (AP000006) 166aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 166
Score = 328 bits (831), Expect = 3e-89
Identities = 163/166 (98%), Positives = 166/166 (99%)
Query: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE 60
MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE
Sbjct: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE 60
Query: 61 TVAMILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRGI 120
TVAMILKTPELR+IYMNLEPTVHMKYVG+HVGYGVIEIEPEPRAIGILA+VAQKIADRGI
Sbjct: 61 TVAMILKTPELRDIYMNLEPTVHMKYVGRHVGYGVIEIEPEPRAIGILARVAQKIADRGI 120
Query: 121 NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY 166
NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY
Sbjct: 121 NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY 166
>pir||B69088 conserved hypothetical protein MTH1654 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622782|gb|AAB86126.1| (AE000924) unknown
[Methanobacterium thermoautotrophicum]
Length = 175
Score = 137 bits (342), Expect = 6e-32
Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Query: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE 60
MW +I+H F+ YP R +A+ ++ G R+ + KI ++E+ +A+A+ VDRR V+
Sbjct: 9 MWKQIKHRFEGYPSRMYVARKIIDLGFRIDRNGKIYCDDVEISDVALARAVGVDRRTVRA 68
Query: 61 TVAMILKTPELREIYMNLEPT-VHMKYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRG 119
T IL+ +LR I+ N+ P ++ + +GV+EIE + R GILA A+ IAD+G
Sbjct: 69 TANTILEDEKLRGIFENMMPAGALLRDAAGELDFGVVEIEADARNPGILAAAARLIADKG 128
Query: 120 INIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISIY 166
I+I QA A DPEL LTIITE PIPG L+ + K++GVKR+SIY
Sbjct: 129 ISIRQAHAGDPELDETPRLTIITETPIPGGLLKDFLKIDGVKRVSIY 175
>gi|11498625 A. fulgidus predicted coding region AF1020 [Archaeoglobus fulgidus]
>gi|7429764|pir||D69377 hypothetical protein AF1020 -
Archaeoglobus fulgidus >gi|2649579|gb|AAB90227.1|
(AE001033) A. fulgidus predicted coding region AF1020
[Archaeoglobus fulgidus]
Length = 165
Score = 124 bits (309), Expect = 5e-28
Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 1/165 (0%)
Query: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKE 60
MW ++ F++YP + +A+ LR G+ V K G+IE+ TKIA+A+ VDR+VV
Sbjct: 1 MWKKVAEKFEKYPSQIAVAREFLRLGISVRNG-KAYCGDIELVPTKIAEAIGVDRKVVLA 59
Query: 61 TVAMILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRGI 120
+ I EL +++ L+P ++ V + +G+GV+E+ E +GI+A VA +A+ GI
Sbjct: 60 AIQNIESDEELSKVFSALKPVANIAEVARILGFGVLEVYAESTKVGIVAGVASALANAGI 119
Query: 121 NIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
+I +AEDPEL E+ LT++TE IPG ++ E+ ++EGV+++ I
Sbjct: 120 SIRYILAEDPELSVESKLTVVTETKIPGAVVEEILRVEGVEKVLI 164
>emb|CAC12233.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 170
Score = 110 bits (273), Expect = 8e-24
Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 4/169 (2%)
Query: 1 MWGRIEHYFDEYPVRKLIAKTLLRYGLRVS---EDMKIKAGEIEVPYTKIAKALNVDRRV 57
MW I F P + I K + G+RV+ ++ + G+IE+ +AKA DRR
Sbjct: 1 MWSYIYDKFSRSPSQLRIVKKMFSIGIRVTKLYDEPVLMCGDIEIRPNTLAKATGTDRRS 60
Query: 58 VKETVAMILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAI-GILAKVAQKIA 116
V + I+ L ++ LEP ++ V +GYGVIEI PE + GI+A V+ IA
Sbjct: 61 VMSVIERIINDETLYPVFSQLEPVANLWKVSSKLGYGVIEILPESASKPGIIAGVSSIIA 120
Query: 117 DRGINIVQAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
RGI+I Q I +DPEL + ++TE+ +P D+I EL +EGV+ I+I
Sbjct: 121 KRGISIRQVIVDDPELVEDPKAVVVTEQKVPPDIIPELKSVEGVRAITI 169
>gb|AAG20410.1| (AE005113) Vng2296c [Halobacterium sp. NRC-1]
Length = 162
Score = 91.3 bits (223), Expect = 6e-18
Identities = 52/161 (32%), Positives = 87/161 (53%), Gaps = 7/161 (4%)
Query: 9 FDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKETVAMILKT 68
F+ P ++ + + LL G V++ ++ +G IE+PYT++A+ VDRRVV T IL
Sbjct: 4 FEGSPGQQAVIRLLLERGFSVNDGGRVVSGGIEIPYTQVAQEAGVDRRVVDSTTEAILDD 63
Query: 69 PELREIYMNLEPTVHM----KYVGKHVGYGVIEIEPEPRAIGILAKVAQKIADRGINIVQ 124
EL I+ N+ + + HV ++ EP GI+A V +AD GI I Q
Sbjct: 64 GELTRIFQNISQIPSLMDLAPVLDLHVVTVAVQDADEP---GIVAAVTGLLADHGIPIRQ 120
Query: 125 AIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
I+EDPE E L ++T++ +PG + L+++ V+ + +
Sbjct: 121 TISEDPEFTDEPRLYVVTDEELPGAVFTALAEMSAVRSVEL 161
>pir||F75015 hypothetical protein PAB1089 - Pyrococcus abyssi (strain Orsay)
>gi|5459078|emb|CAB50564.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 197
Score = 78.0 bits (189), Expect = 6e-14
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 5 IEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKETVAM 64
+E YF YP RK + K L GL V K+ ++EVP T IA+A V+R++V T+
Sbjct: 8 LEEYFRGYPARKKVVKFLWEAGLSVKNG-KVYVKDVEVPITGIAEATGVNRKIVYHTIEY 66
Query: 65 ILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAI-GILAKVAQKIADRGINIV 123
I P L+ ++ NL P + + +G+ V+E+ R LAKV +++ GI ++
Sbjct: 67 IESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSEEGIRVI 126
Query: 124 QAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
+ +P ++ + I+ E +P +I+ L +++I I
Sbjct: 127 EIFGSNP-YEGKSVVYIVVEGILPFKVISSLKGESSIEKIVI 167
>pir||D71456 hypothetical protein PH0306 - Pyrococcus horikoshii
>gi|3256696|dbj|BAA29379.1| (AP000001) 197aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 197
Score = 76.5 bits (185), Expect = 2e-13
Identities = 50/162 (30%), Positives = 83/162 (50%), Gaps = 3/162 (1%)
Query: 5 IEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKETVAM 64
+E YF YP RK + K L GL V KI ++EVP T IA+ V+R++V T+
Sbjct: 8 LEEYFRGYPARKKVVKFLWEAGLSVKNG-KIYVKDVEVPITGIAEVTGVNRKIVYHTIEY 66
Query: 65 ILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAI-GILAKVAQKIADRGINIV 123
I P L+ ++ NL P + + +G+ V+E+ +A +A V +A R I ++
Sbjct: 67 IESKPALKILFENLAPRQSLISIAPLMGWEVLELTISKKAYESTVAMVLNGLAKRRIRVI 126
Query: 124 QAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
+ + +A + I+ E +P D+I EL K +++I I
Sbjct: 127 EIFGTN-TYEGKAKVYIVIEGVLPFDMIAELKKTNTIEKIVI 167
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57893783
Number of Sequences: 2977
Number of extensions: 2198276
Number of successful extensions: 5539
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5528
Number of HSP's gapped (non-prelim): 8
length of query: 166
length of database: 189,106,746
effective HSP length: 55
effective length of query: 111
effective length of database: 156,189,961
effective search space: 17337085671
effective search space used: 17337085671
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)