BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2437 (PAB2437) DE:Hypothetical protein
(280 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75216 hypothetical protein PAB2437 - Pyrococcus abyssi (st... 565 e-160
pir||C71453 hypothetical protein PH0282 - Pyrococcus horikoshii ... 536 e-151
sp|Q57601|Y137_METJA HYPOTHETICAL PROTEIN MJ0137 >gi|2128145|pir... 481 e-135
gi|11498462 conserved hypothetical protein [Archaeoglobus fulgid... 393 e-109
sp|Q58890|YE95_METJA HYPOTHETICAL PROTEIN MJ1495 >gi|2128896|pir... 336 2e-91
pir||A70371 conserved hypothetical protein aq_814 - Aquifex aeol... 328 6e-89
pir||C72320 conserved hypothetical protein - Thermotoga maritima... 321 5e-87
pir||H72529 hypothetical protein APE2212 - Aeropyrum pernix (str... 309 3e-83
>pir||E75216 hypothetical protein PAB2437 - Pyrococcus abyssi (strain Orsay)
>gi|5457689|emb|CAB49180.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 280
Score = 565 bits (1441), Expect = e-160
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MDPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESI 60
MDPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESI
Sbjct: 1 MDPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESI 60
Query: 61 GLFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET 120
GLFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET
Sbjct: 61 GLFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET 120
Query: 121 RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQ 180
RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQ
Sbjct: 121 RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQ 180
Query: 181 TLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGL 240
TLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGL
Sbjct: 181 TLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGL 240
Query: 241 NVSTDVPEEVYALMELYKQPVRQRGTVEFVPYPVRQENKH 280
NVSTDVPEEVYALMELYKQPVRQRGTVEFVPYPVRQENKH
Sbjct: 241 NVSTDVPEEVYALMELYKQPVRQRGTVEFVPYPVRQENKH 280
>pir||C71453 hypothetical protein PH0282 - Pyrococcus horikoshii
>gi|3256671|dbj|BAA29354.1| (AP000001) 280aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 280
Score = 536 bits (1366), Expect = e-151
Identities = 259/280 (92%), Positives = 276/280 (98%)
Query: 1 MDPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESI 60
MDPLSGF GSL+WWFLFLY+LLWPQMQYRQLQLAR +LLE+LARKRNSTVITLIHRQESI
Sbjct: 1 MDPLSGFLGSLIWWFLFLYLLLWPQMQYRQLQLAREKLLERLARKRNSTVITLIHRQESI 60
Query: 61 GLFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET 120
GLFGIPVYRFIS+EDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET
Sbjct: 61 GLFGIPVYRFISIEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET 120
Query: 121 RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQ 180
RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSI+RAVE+KG DKVDDQ
Sbjct: 121 RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIVRAVEKKGVDKVDDQ 180
Query: 181 TLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGL 240
TLILADVAEKAI+QVRDFI++LLKDKYG+EKAKELA++LTEGRWTHDYPITVEEA+KLGL
Sbjct: 181 TLILADVAEKAIRQVRDFIFNLLKDKYGEEKAKELAQVLTEGRWTHDYPITVEEAKKLGL 240
Query: 241 NVSTDVPEEVYALMELYKQPVRQRGTVEFVPYPVRQENKH 280
NVSTDVPEEVYALMELYKQP+RQRGTVEFVPYP++QE KH
Sbjct: 241 NVSTDVPEEVYALMELYKQPIRQRGTVEFVPYPMKQEGKH 280
>sp|Q57601|Y137_METJA HYPOTHETICAL PROTEIN MJ0137 >gi|2128145|pir||A64317 hypothetical
protein MJ0137 - Methanococcus jannaschii
>gi|1592268|gb|AAB98120.1| (U67471) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 286
Score = 481 bits (1225), Expect = e-135
Identities = 229/278 (82%), Positives = 262/278 (93%)
Query: 1 MDPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESI 60
MDPLSGF SL+WW LF Y+++ PQ+QY+QLQLAR ++L +L+ KRNSTVIT+IHRQESI
Sbjct: 6 MDPLSGFISSLIWWLLFFYLIMAPQIQYKQLQLARLKILRELSNKRNSTVITMIHRQESI 65
Query: 61 GLFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAET 120
GLFGIPVY+FI++EDSEE+LRAIR APKDKPIDLIIHTPGGLVLAATQIAKALK HPAET
Sbjct: 66 GLFGIPVYKFITIEDSEEILRAIRAAPKDKPIDLIIHTPGGLVLAATQIAKALKAHPAET 125
Query: 121 RVIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQ 180
RVIVPHYAMSGGTLIALAADKIIMD +AVLGPVDPQLGQYPAPSI++AVE+KG DK DDQ
Sbjct: 126 RVIVPHYAMSGGTLIALAADKIIMDENAVLGPVDPQLGQYPAPSIVKAVEQKGADKADDQ 185
Query: 181 TLILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGL 240
TLILAD+A+KAI QV++F+Y+LLKDKYG+EKAKEL+KILTEGRWTHDYPITVEEA++LGL
Sbjct: 186 TLILADIAKKAINQVQNFVYNLLKDKYGEEKAKELSKILTEGRWTHDYPITVEEAKELGL 245
Query: 241 NVSTDVPEEVYALMELYKQPVRQRGTVEFVPYPVRQEN 278
+V T+VPEEVY LMELYKQPVRQRGTVEF+PYPV+QEN
Sbjct: 246 DVDTNVPEEVYTLMELYKQPVRQRGTVEFMPYPVKQEN 283
>gi|11498462 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483059|pir||H69356 conserved hypothetical protein
AF0856 - Archaeoglobus fulgidus
>gi|2649747|gb|AAB90383.1| (AE001045) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 291
Score = 393 bits (1000), Expect = e-109
Identities = 193/277 (69%), Positives = 231/277 (82%), Gaps = 2/277 (0%)
Query: 2 DPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESIG 61
DP++ G L W LFLY++ PQ++++QL AR R + ++ KR S VIT+IHRQESIG
Sbjct: 11 DPMASLSG-LFWILLFLYLIFAPQLKHQQLLAARRRAMRRIGMKRGSNVITMIHRQESIG 69
Query: 62 LFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETR 121
GIP+YRFI ++DSE+VLRAIR PKDKPIDLIIHTPGGLVLAATQIAKAL DHPA+T
Sbjct: 70 FLGIPIYRFIDIDDSEKVLRAIRSTPKDKPIDLIIHTPGGLVLAATQIAKALHDHPAKTT 129
Query: 122 VIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQT 181
VIVPHYAMSGGTLIALAAD+I++DPHAVLGPVDPQL YPAPSI++ VE+K P +DD+T
Sbjct: 130 VIVPHYAMSGGTLIALAADEILIDPHAVLGPVDPQLMNYPAPSILKVVEKKEPKDIDDKT 189
Query: 182 LILADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGLN 241
LI+AD+AEKAI QVR+ +++LLKDK +EKA+E+AKILTEGRWTHDYP+TVEE R+LGL
Sbjct: 190 LIMADIAEKAINQVRETVFNLLKDKMDEEKAREVAKILTEGRWTHDYPLTVEELRQLGLK 249
Query: 242 VSTDVPEEVYALMELYKQPVRQRGT-VEFVPYPVRQE 277
VSTDVPEEVY LMELY QP+ QR VEFVP P + E
Sbjct: 250 VSTDVPEEVYELMELYPQPMMQRHPGVEFVPSPPKGE 286
>sp|Q58890|YE95_METJA HYPOTHETICAL PROTEIN MJ1495 >gi|2128896|pir||F64486 hypothetical
protein MJ1495 - Methanococcus jannaschii
>gi|1592131|gb|AAB99506.1| (U67590) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 292
Score = 336 bits (853), Expect = 2e-91
Identities = 157/263 (59%), Positives = 216/263 (81%), Gaps = 2/263 (0%)
Query: 12 LWWFLFLYIL-LWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESIGLFGIPVYRF 70
+++FLF+++L ++P+M R + R R + ++ R+R + VI +IHRQE++ GIP+Y+F
Sbjct: 20 MFFFLFIFLLFIYPEMMMRYRIMKRLRCIREIERQRGTRVIAMIHRQEALTFLGIPIYKF 79
Query: 71 ISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMS 130
I++EDSEE+LRAIR+ P+D PIDLIIHTPGGL LA+ QIA ALK+H A+T VI+PHYAMS
Sbjct: 80 ITIEDSEEILRAIRLTPEDMPIDLIIHTPGGLALASEQIALALKEHKAKTTVIIPHYAMS 139
Query: 131 GGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQTLILADVAEK 190
GG+LIALAAD+IIMD +AV+GPVDPQ+GQYPA SI+ A RKG +KV D+TLIL D+++K
Sbjct: 140 GGSLIALAADEIIMDKNAVMGPVDPQIGQYPAASILEAYYRKG-EKVSDETLILVDISKK 198
Query: 191 AIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGLNVSTDVPEEV 250
AIKQ+ +F+Y+LLKDKYGDEKAKE+AK LT G WTHDYP+TV + ++LG+ V+T+VP +V
Sbjct: 199 AIKQMEEFVYELLKDKYGDEKAKEIAKKLTSGTWTHDYPLTVSKLKELGIEVNTNVPRKV 258
Query: 251 YALMELYKQPVRQRGTVEFVPYP 273
Y L+ELY QP+ + +V ++P P
Sbjct: 259 YELLELYPQPMGAKPSVYYIPVP 281
>pir||A70371 conserved hypothetical protein aq_814 - Aquifex aeolicus
>gi|2983372|gb|AAC06959.1| (AE000708) hypothetical
protein [Aquifex aeolicus]
Length = 288
Score = 328 bits (831), Expect = 6e-89
Identities = 170/276 (61%), Positives = 212/276 (76%), Gaps = 3/276 (1%)
Query: 2 DPLSGFFGSLLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESIG 61
DP S F SLLW+ LF++ILL P + L AR ++ KL KR S VIT+IHRQE IG
Sbjct: 5 DPFSYLF-SLLWFLLFVFILLSPWYKRMALIKAREDVIRKLEEKRKSRVITMIHRQEQIG 63
Query: 62 LFGIPVYRFISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETR 121
GIP++RF+++EDSE VLRAIRM P D PIDLIIHTPGGL LAATQIA AL H A R
Sbjct: 64 FLGIPIFRFMTIEDSERVLRAIRMTPDDMPIDLIIHTPGGLALAATQIANALVKHKAPVR 123
Query: 122 VIVPHYAMSGGTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQT 181
VIVPHYAMSGGTLIALAAD+IIMD +AVLGPVDPQ+G PA SI++ +E+K P +DDQT
Sbjct: 124 VIVPHYAMSGGTLIALAADEIIMDENAVLGPVDPQIGNMPAASILKVLEKKDPKDIDDQT 183
Query: 182 LILADVAEKAIKQVRDFIYDLL-KDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGL 240
LI+ADV+EKAIKQ+ D + DLL K+ EKAK++A+ L G++THDYP+TVE + LGL
Sbjct: 184 LIMADVSEKAIKQMVDCLVDLLTKNGMDKEKAKKIAEELATGKFTHDYPLTVEYLKSLGL 243
Query: 241 NVSTDVPEEVYALMELYKQPV-RQRGTVEFVPYPVR 275
V+T+VP+EVY LMELY+QP+ Q +V+++P P +
Sbjct: 244 PVNTNVPQEVYELMELYEQPMGSQPPSVQYIPVPYK 279
>pir||C72320 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981452|gb|AAD35997.1|AE001755_20 (AE001755)
conserved hypothetical protein [Thermotoga maritima]
Length = 284
Score = 321 bits (815), Expect = 5e-87
Identities = 151/262 (57%), Positives = 204/262 (77%)
Query: 12 LWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESIGLFGIPVYRFI 71
++W +F++ L+ P ++ L+ AR L+ ++ +KRNS VITLIHR ESI G PV R+I
Sbjct: 11 IFWMIFIFSLITPFLKNSALKSAREALIREIEKKRNSRVITLIHRTESISFLGFPVRRYI 70
Query: 72 SMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMSG 131
+EDSEE+LRAI++ P D PIDLI+HTPGGLVLAA QIA+ALK H + V VPHYAMSG
Sbjct: 71 DIEDSEEILRAIKLTPSDMPIDLILHTPGGLVLAAEQIARALKMHKGKVTVFVPHYAMSG 130
Query: 132 GTLIALAADKIIMDPHAVLGPVDPQLGQYPAPSIIRAVERKGPDKVDDQTLILADVAEKA 191
GTLIALAAD+IIMD +AVLGP+DPQ+G PAPSI+ AV++K ++VDDQTLILAD+AEKA
Sbjct: 131 GTLIALAADEIIMDENAVLGPLDPQIGNMPAPSILAAVKKKDVNEVDDQTLILADIAEKA 190
Query: 192 IKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGLNVSTDVPEEVY 251
I+QV++F+ ++L DK EKA+++A L G WTHDYP+ E+ R++G+ V TD+P+E+Y
Sbjct: 191 IRQVKEFVVEILSDKVSKEKAEKIADKLCSGYWTHDYPLNYEKLREMGIQVKTDMPQEIY 250
Query: 252 ALMELYKQPVRQRGTVEFVPYP 273
LM+LYKQ +R +V ++P P
Sbjct: 251 DLMDLYKQAEPKRPSVNYIPAP 272
>pir||H72529 hypothetical protein APE2212 - Aeropyrum pernix (strain K1)
>gi|5105912|dbj|BAA81224.1| (AP000063) 295aa long
hypothetical protein [Aeropyrum pernix]
Length = 295
Score = 309 bits (783), Expect = 3e-83
Identities = 160/270 (59%), Positives = 198/270 (73%), Gaps = 7/270 (2%)
Query: 11 LLWWFLFLYILLWPQMQYRQLQLARARLLEKLARKRNSTVITLIHRQESIGLFGIPVYRF 70
LL+W L L +L P + R+LQ AR L+ + +K VIT+IHR+E + FGIP+ RF
Sbjct: 14 LLFWLLILASMLNPVLAVRRLQAARLELIRSMEKKYGWRVITMIHREERVSFFGIPLRRF 73
Query: 71 ISMEDSEEVLRAIRMAPKDKPIDLIIHTPGGLVLAATQIAKALKDHPAETRVIVPHYAMS 130
I ++DSE V+RAIR P +KPI LI+HTPGGLVLAA+QIA+ALK H VIVPHYAMS
Sbjct: 74 IDIDDSEAVIRAIRSTPPEKPIALILHTPGGLVLAASQIARALKRHRGRKIVIVPHYAMS 133
Query: 131 GGTLIALAADKIIMDPHAVLGPVDPQLG------QYPAPSIIRAVERKGPDKVDDQTLIL 184
GGTLIALAAD+I MDP+AVLGP+DPQL PAPS+++ KG D D TLIL
Sbjct: 134 GGTLIALAADEIRMDPNAVLGPLDPQLSAGPTGPAVPAPSVVKVARMKGKD-AQDTTLIL 192
Query: 185 ADVAEKAIKQVRDFIYDLLKDKYGDEKAKELAKILTEGRWTHDYPITVEEARKLGLNVST 244
ADVAEKAI+++R+ I +LLKDK G EKA+E A +LTEGRWTHDYPIT E+AR++GL VS
Sbjct: 193 ADVAEKAIEEMREVITELLKDKMGVEKARETAVLLTEGRWTHDYPITFEKAREIGLPVSD 252
Query: 245 DVPEEVYALMELYKQPVRQRGTVEFVPYPV 274
+VP EVY LMELY Q R VE++P P+
Sbjct: 253 EVPPEVYQLMELYPQAPANRPGVEYLPQPI 282
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101369497
Number of Sequences: 2977
Number of extensions: 4128864
Number of successful extensions: 11665
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11653
Number of HSP's gapped (non-prelim): 8
length of query: 280
length of database: 189,106,746
effective HSP length: 54
effective length of query: 226
effective length of database: 156,788,448
effective search space: 35434189248
effective search space used: 35434189248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)