BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB2439 (PAB2439) DE:sugar ABC TRANSPORTER binding protein related (545 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||D75208 sugar abc transporter binding protein related PAB243... 1125 0.0 pir||D71243 hypothetical protein PH0206 - Pyrococcus horikoshii ... 986 0.0 pir||B72451 hypothetical protein APE2254 - Aeropyrum pernix (str... 585 e-166 pir||B72378 hypothetical protein TM0418 - Thermotoga maritima (s... 204 3e-51 pir||B71123 hypothetical protein PH0753 - Pyrococcus horikoshii ... 83 6e-15 dbj|BAB18102.1| (AB034969) cyclomaltodextrin binding protein [Th... 71 3e-11 >pir||D75208 sugar abc transporter binding protein related PAB2439 - Pyrococcus abyssi (strain Orsay) >gi|5457624|emb|CAB49115.1| (AJ248283) sugar ABC TRANSPORTER binding protein related [Pyrococcus abyssi] Length = 545 Score = 1125 bits (2879), Expect = 0.0 Identities = 545/545 (100%), Positives = 545/545 (100%) Query: 1 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN 60 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN Sbjct: 1 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN 60 Query: 61 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE 120 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE Sbjct: 61 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE 120 Query: 121 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR 180 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR Sbjct: 121 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR 180 Query: 181 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG 240 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG Sbjct: 181 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG 240 Query: 241 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS 300 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS Sbjct: 241 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS 300 Query: 301 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLFPAGEKG 360 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLFPAGEKG Sbjct: 301 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLFPAGEKG 360 Query: 361 DRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLP 420 DRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLP Sbjct: 361 DRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLP 420 Query: 421 VRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTH 480 VRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTH Sbjct: 421 VRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTH 480 Query: 481 LAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW 540 LAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW Sbjct: 481 LAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW 540 Query: 541 TFPQG 545 TFPQG Sbjct: 541 TFPQG 545 >pir||D71243 hypothetical protein PH0206 - Pyrococcus horikoshii >gi|3256592|dbj|BAA29275.1| (AP000001) 544aa long hypothetical protein [Pyrococcus horikoshii] Length = 544 Score = 986 bits (2520), Expect = 0.0 Identities = 475/549 (86%), Positives = 510/549 (92%), Gaps = 9/549 (1%) Query: 1 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN 60 M+ + +ILV L+LFAV ASGCIGG T+TQ S E++LTGDFNKDVIEIGK+LEKNGI+ Sbjct: 1 MRGKGVILVALMLFAVFASGCIGG-TSTKTQAPS-EVKLTGDFNKDVIEIGKILEKNGIS 58 Query: 61 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE 120 EVKF+AWGSG+ NSVMRVYGIV+AAY+IN+IWKENGINVKI + ++YDQSFKDQYQE Sbjct: 59 EVKFAAWGSGDPNSVMRVYGIVDAAYKINRIWKENGINVKITVT---VKYDQSFKDQYQE 115 Query: 121 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR 180 FLSKQPLGQAGDFFVNSYAFLPNLA+EGYILDITDYAKAYQS++NDFYPSLLEAAKY G+ Sbjct: 116 FLSKQPLGQAGDFFVNSYAFLPNLADEGYILDITDYAKAYQSLINDFYPSLLEAAKYNGK 175 Query: 181 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG 240 LYGLPQDTEARPLYIR+DVAKC GLDVS+LP+KVKNGEFTWSDVY WAKKAKEKGCAEWG Sbjct: 176 LYGLPQDTEARPLYIRRDVAKCAGLDVSSLPEKVKNGEFTWSDVYYWAKKAKEKGCAEWG 235 Query: 241 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS 300 LIHRKGSAHPDLIQFIFAF GKLYDEK GKLVLDVPAVYKWLYVEWKFAQDGLLP+DIMS Sbjct: 236 LIHRKGSAHPDLIQFIFAFGGKLYDEKNGKLVLDVPAVYKWLYVEWKFAQDGLLPKDIMS 295 Query: 301 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYN----GRSLKPEEVKEWFAYTLFPA 356 WDWAKQIHPT+V G+TLF IGGTW+WTEWQ K YY+ R LKPEEVKEWFAYTLFPA Sbjct: 296 WDWAKQIHPTIVEGRTLFDIGGTWYWTEWQTKDYYSKEGTPRPLKPEEVKEWFAYTLFPA 355 Query: 357 GEKGDRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVIS 416 GEKGD+PVTLSQPFIWMINSKAGQLNPKY+ELKDVYHALAFLM+VKASD EINAIHSVIS Sbjct: 356 GEKGDKPVTLSQPFIWMINSKAGQLNPKYEELKDVYHALAFLMIVKASDPEINAIHSVIS 415 Query: 417 AHLPVRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYML 476 AHLPVRKEAAKLIKD+ W+NKLK LDLDLAPEVKENIK IVE TVNPIN KFLADVSYML Sbjct: 416 AHLPVRKEAAKLIKDDAWLNKLKNLDLDLAPEVKENIKGIVEKTVNPINAKFLADVSYML 475 Query: 477 EYTHLAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEI 536 EYTHLAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKI ADVELS+NVEIVGEI Sbjct: 476 EYTHLAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKINADVELSKNVEIVGEI 535 Query: 537 PKDWTFPQG 545 PKDW FPQG Sbjct: 536 PKDWKFPQG 544 >pir||B72451 hypothetical protein APE2254 - Aeropyrum pernix (strain K1) >gi|5105955|dbj|BAA81266.1| (AP000064) 583aa long hypothetical protein [Aeropyrum pernix] Length = 583 Score = 585 bits (1493), Expect = e-166 Identities = 275/523 (52%), Positives = 375/523 (71%), Gaps = 12/523 (2%) Query: 28 TETQPSSTEIQ-LTGDFNKDVIEIGKVLEKNGINEVKFSAWGSGEANSVMRVYGIVNAAY 86 T+T+ E++ LTG+ +D++ I + L NG+ E K+ GSG+ NS+MRVYGIV AA Sbjct: 59 TKTEAQMVELKPLTGNVREDIVNIARYLSANGVTEAKYRVHGSGDPNSIMRVYGIVEAAA 118 Query: 87 EINKIWKENGINVKIVIPEDMIRYDQSFKDQYQEFLSKQPLGQAGDFFVNSYAFLPNLAE 146 +NKI +E G+N KIVI + I++ + + + F PL Q D SY ++ A+ Sbjct: 119 RLNKILEEEGVNFKIVIED--IKFSANADEPAKVFQQSFPLKQEADIIAVSYRWISTFAK 176 Query: 147 EGYILDITDYAKAYQ-SVLNDFYPSLLEAAKYKGRLYGLPQDTEARPLYIRKDVAKCVGL 205 EGY+LDITDYA AY S L D+Y SL + YKGR+Y LPQDTEARPLYI K V +C+G Sbjct: 177 EGYLLDITDYANAYMGSELEDYYDSLWSSVTYKGRIYALPQDTEARPLYILKPVMECLGY 236 Query: 206 DVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWGLIHRKGSAHPDLIQFIFAFNGKLYD 265 D + K+ +GE+TW DV AK+A +KGC+EWG+IHRKGSAHPDL+QF +AF G+ Sbjct: 237 DAWDIAAKIDSGEYTWKDVMRIAKEAVDKGCSEWGVIHRKGSAHPDLVQFYYAFGGEFTG 296 Query: 266 EKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMSWDWAKQIHPTVVTGKTLFFIGGTWH 325 KL L++ A+YKWL VE+ A++GL PE+++ WDWAKQIHPT+V+ KT F IGGTW+ Sbjct: 297 SDPDKLYLNLEALYKWLAVEYALARNGLTPENMLEWDWAKQIHPTIVSAKTAFDIGGTWY 356 Query: 326 WTEWQAKKYYNG------RSLKPEEVKEWFAYTLFPAGEKGDRPVTLSQPFIWMINSKAG 379 WTEWQ KKYY R L PEEVKE FAY+LFPAGE G PVTLSQPF+WMI++ AG Sbjct: 357 WTEWQTKKYYTDPQTGEQRGLTPEEVKERFAYSLFPAGEPGKSPVTLSQPFVWMISANAG 416 Query: 380 QLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLPVRKEAAKLIKDENWINKLK 439 +LNPKYD+LK+ YH +AFL+++KA+D ++ AIHS++SAH+P+R++AA L+ D+ ++ KL Sbjct: 417 KLNPKYDDLKEAYHRIAFLLILKANDPDLVAIHSIVSAHIPIREKAALLMDDQEFVGKLA 476 Query: 440 --TLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTHLAPAHPKYPALADIFKE 497 LD+ ++ E +E +I + T +PIN++FL +V+YMLEYTH+ P HP Y LA+ FK+ Sbjct: 477 QGNLDMFVSDEAREAFVEIAKKTAHPINIEFLKNVTYMLEYTHIPPLHPSYQPLAEFFKD 536 Query: 498 AVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW 540 AVD VL+G+MTPEEA ++ KI+AD EL++ +EIVG IP W Sbjct: 537 AVDFVLKGQMTPEEATNYVVQKIRADPELAETIEIVGSIPSGW 579 >pir||B72378 hypothetical protein TM0418 - Thermotoga maritima (strain MSB8) >gi|4980924|gb|AAD35503.1|AE001721_2 (AE001721) sugar ABC transporter, periplasmic sugar-binding protein, putative [Thermotoga maritima] Length = 443 Score = 204 bits (513), Expect = 3e-51 Identities = 135/368 (36%), Positives = 196/368 (52%), Gaps = 27/368 (7%) Query: 61 EVKFSAWGSGEAN-SVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQ 119 E+ +AW G N S R + AA +NKI K+ G+++ I + D S Q Sbjct: 20 EITITAWTVGPDNPSYYRFDNLKTAAERLNKILKDLGVDLTIKVDGYFDTTDWSSFKQKV 79 Query: 120 EFLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAY-QSVLNDFYPSLLEAAKYK 178 F K GQ D + + + A+ GYI+ + +Y K Y V DF PSL E+ KYK Sbjct: 80 VFGIKS--GQTVDIICSGHDDIGAWAKAGYIIPLDEYVKKYWDEVYYDFIPSLWESTKYK 137 Query: 179 GRLYGLPQDTEARPLYIRKDVAKCVGL---DVSTLPDKVKNGEFTWSDVYEWAKKAKEKG 235 G++YG+PQDTEARP YI K V K +G ++++LPD++ GEFT+ D E A++A EKG Sbjct: 138 GQIYGIPQDTEARPFYINKQVLKKLGWSDEEINSLPDRIARGEFTFEDFIEVAREAIEKG 197 Query: 236 CAEWGLIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQD-GLL 294 EWGL HR A D Q + + YDE+ V +V + + + + A +L Sbjct: 198 LVEWGLYHRP-KAGIDYYQLMISMGIDFYDEEKAVFVYNVEEMKDYYKLLYDLANTYKIL 256 Query: 295 PEDIMSWDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLF 354 P++++ W +H V GK L ++GGTW+W EW KK Y G++ EE++E F Sbjct: 257 PKNMIGTPWT-SVHKDVTGGKVLAWMGGTWNWAEW--KKDY-GKT--EEELQEMFILAPV 310 Query: 355 PAGEKGDRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSV 414 P RP TLS P ++MI S + KY + +AFL++ AS E+N H+V Sbjct: 311 PKFRDRGRPNTLSHPVVYMIPSTS-----KYPD-------IAFLLITLASAPELNMRHAV 358 Query: 415 ISAHLPVR 422 S HLP+R Sbjct: 359 ESGHLPIR 366 >pir||B71123 hypothetical protein PH0753 - Pyrococcus horikoshii >gi|3257161|dbj|BAA29844.1| (AP000003) 464aa long hypothetical protein [Pyrococcus horikoshii] Length = 464 Score = 83.5 bits (203), Expect = 6e-15 Identities = 74/241 (30%), Positives = 112/241 (45%), Gaps = 35/241 (14%) Query: 2 KARVLILVGLLLFAV----IASGCIGGGQKTETQPSSTEIQLTGDFNKDVIE-IGKVLEK 56 K R +LVG L+ A+ IA+GCIGGG T+T P+ + E I K K Sbjct: 3 KMRKPLLVGFLILALVLSTIAAGCIGGGT-TQTSPTQSPTGTQSPTPTQTTETITKTETK 61 Query: 57 NGINE---VKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQS 113 I ++F+ W +GE M+ Y + +E KEN P ++Y+ Sbjct: 62 TMIQNQVFIRFAGWSAGETE--MKNYQRMIELFE-----KEN--------PNIKVKYEVI 106 Query: 114 FKDQYQEFLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLE 173 + ++ L+ G A D F ++ P E+G + I++ A +S +N FYP LLE Sbjct: 107 TQMFHENILASFGAGVAPDVFYVDSSWAPIFIEKGALYPISELAD--ESFINKFYPFLLE 164 Query: 174 AAKYKGRLYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKE 233 K G+LYGLP+D L+ K + + GL T P + TW ++ E+AK E Sbjct: 165 PFKKNGKLYGLPKDWSMLALFYNKKLFEQAGL---TKPPE------TWDELLEYAKIITE 215 Query: 234 K 234 K Sbjct: 216 K 216 >dbj|BAB18102.1| (AB034969) cyclomaltodextrin binding protein [Thermococcus sp. B1001] Length = 441 Score = 71.0 bits (171), Expect = 3e-11 Identities = 80/326 (24%), Positives = 127/326 (38%), Gaps = 48/326 (14%) Query: 6 LILVGLLLFAVIASGCIGGG-------QKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNG 58 L+L+G+L V+ASGCIGGG Q T+T +S+ Q T + E+ Sbjct: 8 LLLIGVLAIGVVASGCIGGGGTTSSPTQTTQTTTTSSPTQTTTTTSSPTQTTTTTTEEKK 67 Query: 59 INEVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQY 118 + V + A G E ++ + + A +EI P I+ +Q D Sbjct: 68 VTIVIWHAIGPNE----LKAFEDLIAEFEIE-------------YPNIDIQLEQK-ADLE 109 Query: 119 QEFLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYK 178 + P GQ D F+ ++ ++ AE G + I +Y +LN F P A +Y Sbjct: 110 TSLKAAIPAGQGPDLFMWAHDWIGKFAEAGLLEPIDEYIT--PEILNKFSPMAQNAIEYG 167 Query: 179 GRLYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAE 238 G Y +P E L KD+ V N T+ ++ +K + Sbjct: 168 GHYYAMPYAAETVALIYNKDM--------------VPNPPKTFDEMKAIMEKYYNEAEGT 213 Query: 239 WGLIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDI 298 +GL L ++ AF G +D+KT LD P + +KF + + P Sbjct: 214 YGLATPMDPYF--LSGWVHAFGGYYFDDKTKTPGLDKPETLQ----GFKFFFEQIFPYVA 267 Query: 299 MSWDWAKQIHPTVVTGKTLFFIGGTW 324 + D+ Q+ GK I G W Sbjct: 268 KTQDYNAQV-SLFHDGKAPMMINGPW 292 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.318 0.137 0.415 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 217269420 Number of Sequences: 2977 Number of extensions: 9811551 Number of successful extensions: 32223 Number of sequences better than 1.0e-10: 6 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 32202 Number of HSP's gapped (non-prelim): 7 length of query: 545 length of database: 189,106,746 effective HSP length: 55 effective length of query: 490 effective length of database: 156,189,961 effective search space: 76533080890 effective search space used: 76533080890 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 167 (69.5 bits)