BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2439 (PAB2439) DE:sugar ABC TRANSPORTER binding protein
related
(545 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75208 sugar abc transporter binding protein related PAB243... 1125 0.0
pir||D71243 hypothetical protein PH0206 - Pyrococcus horikoshii ... 986 0.0
pir||B72451 hypothetical protein APE2254 - Aeropyrum pernix (str... 585 e-166
pir||B72378 hypothetical protein TM0418 - Thermotoga maritima (s... 204 3e-51
pir||B71123 hypothetical protein PH0753 - Pyrococcus horikoshii ... 83 6e-15
dbj|BAB18102.1| (AB034969) cyclomaltodextrin binding protein [Th... 71 3e-11
>pir||D75208 sugar abc transporter binding protein related PAB2439 - Pyrococcus
abyssi (strain Orsay) >gi|5457624|emb|CAB49115.1|
(AJ248283) sugar ABC TRANSPORTER binding protein related
[Pyrococcus abyssi]
Length = 545
Score = 1125 bits (2879), Expect = 0.0
Identities = 545/545 (100%), Positives = 545/545 (100%)
Query: 1 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN 60
MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN
Sbjct: 1 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN 60
Query: 61 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE 120
EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE
Sbjct: 61 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE 120
Query: 121 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR 180
FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR
Sbjct: 121 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR 180
Query: 181 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG 240
LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG
Sbjct: 181 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG 240
Query: 241 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS 300
LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS
Sbjct: 241 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS 300
Query: 301 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLFPAGEKG 360
WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLFPAGEKG
Sbjct: 301 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLFPAGEKG 360
Query: 361 DRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLP 420
DRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLP
Sbjct: 361 DRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLP 420
Query: 421 VRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTH 480
VRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTH
Sbjct: 421 VRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTH 480
Query: 481 LAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW 540
LAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW
Sbjct: 481 LAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW 540
Query: 541 TFPQG 545
TFPQG
Sbjct: 541 TFPQG 545
>pir||D71243 hypothetical protein PH0206 - Pyrococcus horikoshii
>gi|3256592|dbj|BAA29275.1| (AP000001) 544aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 544
Score = 986 bits (2520), Expect = 0.0
Identities = 475/549 (86%), Positives = 510/549 (92%), Gaps = 9/549 (1%)
Query: 1 MKARVLILVGLLLFAVIASGCIGGGQKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNGIN 60
M+ + +ILV L+LFAV ASGCIGG T+TQ S E++LTGDFNKDVIEIGK+LEKNGI+
Sbjct: 1 MRGKGVILVALMLFAVFASGCIGG-TSTKTQAPS-EVKLTGDFNKDVIEIGKILEKNGIS 58
Query: 61 EVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQE 120
EVKF+AWGSG+ NSVMRVYGIV+AAY+IN+IWKENGINVKI + ++YDQSFKDQYQE
Sbjct: 59 EVKFAAWGSGDPNSVMRVYGIVDAAYKINRIWKENGINVKITVT---VKYDQSFKDQYQE 115
Query: 121 FLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYKGR 180
FLSKQPLGQAGDFFVNSYAFLPNLA+EGYILDITDYAKAYQS++NDFYPSLLEAAKY G+
Sbjct: 116 FLSKQPLGQAGDFFVNSYAFLPNLADEGYILDITDYAKAYQSLINDFYPSLLEAAKYNGK 175
Query: 181 LYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWG 240
LYGLPQDTEARPLYIR+DVAKC GLDVS+LP+KVKNGEFTWSDVY WAKKAKEKGCAEWG
Sbjct: 176 LYGLPQDTEARPLYIRRDVAKCAGLDVSSLPEKVKNGEFTWSDVYYWAKKAKEKGCAEWG 235
Query: 241 LIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMS 300
LIHRKGSAHPDLIQFIFAF GKLYDEK GKLVLDVPAVYKWLYVEWKFAQDGLLP+DIMS
Sbjct: 236 LIHRKGSAHPDLIQFIFAFGGKLYDEKNGKLVLDVPAVYKWLYVEWKFAQDGLLPKDIMS 295
Query: 301 WDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYN----GRSLKPEEVKEWFAYTLFPA 356
WDWAKQIHPT+V G+TLF IGGTW+WTEWQ K YY+ R LKPEEVKEWFAYTLFPA
Sbjct: 296 WDWAKQIHPTIVEGRTLFDIGGTWYWTEWQTKDYYSKEGTPRPLKPEEVKEWFAYTLFPA 355
Query: 357 GEKGDRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVIS 416
GEKGD+PVTLSQPFIWMINSKAGQLNPKY+ELKDVYHALAFLM+VKASD EINAIHSVIS
Sbjct: 356 GEKGDKPVTLSQPFIWMINSKAGQLNPKYEELKDVYHALAFLMIVKASDPEINAIHSVIS 415
Query: 417 AHLPVRKEAAKLIKDENWINKLKTLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYML 476
AHLPVRKEAAKLIKD+ W+NKLK LDLDLAPEVKENIK IVE TVNPIN KFLADVSYML
Sbjct: 416 AHLPVRKEAAKLIKDDAWLNKLKNLDLDLAPEVKENIKGIVEKTVNPINAKFLADVSYML 475
Query: 477 EYTHLAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEI 536
EYTHLAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKI ADVELS+NVEIVGEI
Sbjct: 476 EYTHLAPAHPKYPALADIFKEAVDKVLRGEMTPEEAVKFIEDKINADVELSKNVEIVGEI 535
Query: 537 PKDWTFPQG 545
PKDW FPQG
Sbjct: 536 PKDWKFPQG 544
>pir||B72451 hypothetical protein APE2254 - Aeropyrum pernix (strain K1)
>gi|5105955|dbj|BAA81266.1| (AP000064) 583aa long
hypothetical protein [Aeropyrum pernix]
Length = 583
Score = 585 bits (1493), Expect = e-166
Identities = 275/523 (52%), Positives = 375/523 (71%), Gaps = 12/523 (2%)
Query: 28 TETQPSSTEIQ-LTGDFNKDVIEIGKVLEKNGINEVKFSAWGSGEANSVMRVYGIVNAAY 86
T+T+ E++ LTG+ +D++ I + L NG+ E K+ GSG+ NS+MRVYGIV AA
Sbjct: 59 TKTEAQMVELKPLTGNVREDIVNIARYLSANGVTEAKYRVHGSGDPNSIMRVYGIVEAAA 118
Query: 87 EINKIWKENGINVKIVIPEDMIRYDQSFKDQYQEFLSKQPLGQAGDFFVNSYAFLPNLAE 146
+NKI +E G+N KIVI + I++ + + + F PL Q D SY ++ A+
Sbjct: 119 RLNKILEEEGVNFKIVIED--IKFSANADEPAKVFQQSFPLKQEADIIAVSYRWISTFAK 176
Query: 147 EGYILDITDYAKAYQ-SVLNDFYPSLLEAAKYKGRLYGLPQDTEARPLYIRKDVAKCVGL 205
EGY+LDITDYA AY S L D+Y SL + YKGR+Y LPQDTEARPLYI K V +C+G
Sbjct: 177 EGYLLDITDYANAYMGSELEDYYDSLWSSVTYKGRIYALPQDTEARPLYILKPVMECLGY 236
Query: 206 DVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAEWGLIHRKGSAHPDLIQFIFAFNGKLYD 265
D + K+ +GE+TW DV AK+A +KGC+EWG+IHRKGSAHPDL+QF +AF G+
Sbjct: 237 DAWDIAAKIDSGEYTWKDVMRIAKEAVDKGCSEWGVIHRKGSAHPDLVQFYYAFGGEFTG 296
Query: 266 EKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDIMSWDWAKQIHPTVVTGKTLFFIGGTWH 325
KL L++ A+YKWL VE+ A++GL PE+++ WDWAKQIHPT+V+ KT F IGGTW+
Sbjct: 297 SDPDKLYLNLEALYKWLAVEYALARNGLTPENMLEWDWAKQIHPTIVSAKTAFDIGGTWY 356
Query: 326 WTEWQAKKYYNG------RSLKPEEVKEWFAYTLFPAGEKGDRPVTLSQPFIWMINSKAG 379
WTEWQ KKYY R L PEEVKE FAY+LFPAGE G PVTLSQPF+WMI++ AG
Sbjct: 357 WTEWQTKKYYTDPQTGEQRGLTPEEVKERFAYSLFPAGEPGKSPVTLSQPFVWMISANAG 416
Query: 380 QLNPKYDELKDVYHALAFLMLVKASDAEINAIHSVISAHLPVRKEAAKLIKDENWINKLK 439
+LNPKYD+LK+ YH +AFL+++KA+D ++ AIHS++SAH+P+R++AA L+ D+ ++ KL
Sbjct: 417 KLNPKYDDLKEAYHRIAFLLILKANDPDLVAIHSIVSAHIPIREKAALLMDDQEFVGKLA 476
Query: 440 --TLDLDLAPEVKENIKDIVESTVNPINVKFLADVSYMLEYTHLAPAHPKYPALADIFKE 497
LD+ ++ E +E +I + T +PIN++FL +V+YMLEYTH+ P HP Y LA+ FK+
Sbjct: 477 QGNLDMFVSDEAREAFVEIAKKTAHPINIEFLKNVTYMLEYTHIPPLHPSYQPLAEFFKD 536
Query: 498 AVDKVLRGEMTPEEAVKFIEDKIKADVELSQNVEIVGEIPKDW 540
AVD VL+G+MTPEEA ++ KI+AD EL++ +EIVG IP W
Sbjct: 537 AVDFVLKGQMTPEEATNYVVQKIRADPELAETIEIVGSIPSGW 579
>pir||B72378 hypothetical protein TM0418 - Thermotoga maritima (strain MSB8)
>gi|4980924|gb|AAD35503.1|AE001721_2 (AE001721) sugar
ABC transporter, periplasmic sugar-binding protein,
putative [Thermotoga maritima]
Length = 443
Score = 204 bits (513), Expect = 3e-51
Identities = 135/368 (36%), Positives = 196/368 (52%), Gaps = 27/368 (7%)
Query: 61 EVKFSAWGSGEAN-SVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQYQ 119
E+ +AW G N S R + AA +NKI K+ G+++ I + D S Q
Sbjct: 20 EITITAWTVGPDNPSYYRFDNLKTAAERLNKILKDLGVDLTIKVDGYFDTTDWSSFKQKV 79
Query: 120 EFLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAY-QSVLNDFYPSLLEAAKYK 178
F K GQ D + + + A+ GYI+ + +Y K Y V DF PSL E+ KYK
Sbjct: 80 VFGIKS--GQTVDIICSGHDDIGAWAKAGYIIPLDEYVKKYWDEVYYDFIPSLWESTKYK 137
Query: 179 GRLYGLPQDTEARPLYIRKDVAKCVGL---DVSTLPDKVKNGEFTWSDVYEWAKKAKEKG 235
G++YG+PQDTEARP YI K V K +G ++++LPD++ GEFT+ D E A++A EKG
Sbjct: 138 GQIYGIPQDTEARPFYINKQVLKKLGWSDEEINSLPDRIARGEFTFEDFIEVAREAIEKG 197
Query: 236 CAEWGLIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQD-GLL 294
EWGL HR A D Q + + YDE+ V +V + + + + A +L
Sbjct: 198 LVEWGLYHRP-KAGIDYYQLMISMGIDFYDEEKAVFVYNVEEMKDYYKLLYDLANTYKIL 256
Query: 295 PEDIMSWDWAKQIHPTVVTGKTLFFIGGTWHWTEWQAKKYYNGRSLKPEEVKEWFAYTLF 354
P++++ W +H V GK L ++GGTW+W EW KK Y G++ EE++E F
Sbjct: 257 PKNMIGTPWT-SVHKDVTGGKVLAWMGGTWNWAEW--KKDY-GKT--EEELQEMFILAPV 310
Query: 355 PAGEKGDRPVTLSQPFIWMINSKAGQLNPKYDELKDVYHALAFLMLVKASDAEINAIHSV 414
P RP TLS P ++MI S + KY + +AFL++ AS E+N H+V
Sbjct: 311 PKFRDRGRPNTLSHPVVYMIPSTS-----KYPD-------IAFLLITLASAPELNMRHAV 358
Query: 415 ISAHLPVR 422
S HLP+R
Sbjct: 359 ESGHLPIR 366
>pir||B71123 hypothetical protein PH0753 - Pyrococcus horikoshii
>gi|3257161|dbj|BAA29844.1| (AP000003) 464aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 464
Score = 83.5 bits (203), Expect = 6e-15
Identities = 74/241 (30%), Positives = 112/241 (45%), Gaps = 35/241 (14%)
Query: 2 KARVLILVGLLLFAV----IASGCIGGGQKTETQPSSTEIQLTGDFNKDVIE-IGKVLEK 56
K R +LVG L+ A+ IA+GCIGGG T+T P+ + E I K K
Sbjct: 3 KMRKPLLVGFLILALVLSTIAAGCIGGGT-TQTSPTQSPTGTQSPTPTQTTETITKTETK 61
Query: 57 NGINE---VKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQS 113
I ++F+ W +GE M+ Y + +E KEN P ++Y+
Sbjct: 62 TMIQNQVFIRFAGWSAGETE--MKNYQRMIELFE-----KEN--------PNIKVKYEVI 106
Query: 114 FKDQYQEFLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLE 173
+ ++ L+ G A D F ++ P E+G + I++ A +S +N FYP LLE
Sbjct: 107 TQMFHENILASFGAGVAPDVFYVDSSWAPIFIEKGALYPISELAD--ESFINKFYPFLLE 164
Query: 174 AAKYKGRLYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKE 233
K G+LYGLP+D L+ K + + GL T P + TW ++ E+AK E
Sbjct: 165 PFKKNGKLYGLPKDWSMLALFYNKKLFEQAGL---TKPPE------TWDELLEYAKIITE 215
Query: 234 K 234
K
Sbjct: 216 K 216
>dbj|BAB18102.1| (AB034969) cyclomaltodextrin binding protein [Thermococcus sp.
B1001]
Length = 441
Score = 71.0 bits (171), Expect = 3e-11
Identities = 80/326 (24%), Positives = 127/326 (38%), Gaps = 48/326 (14%)
Query: 6 LILVGLLLFAVIASGCIGGG-------QKTETQPSSTEIQLTGDFNKDVIEIGKVLEKNG 58
L+L+G+L V+ASGCIGGG Q T+T +S+ Q T + E+
Sbjct: 8 LLLIGVLAIGVVASGCIGGGGTTSSPTQTTQTTTTSSPTQTTTTTSSPTQTTTTTTEEKK 67
Query: 59 INEVKFSAWGSGEANSVMRVYGIVNAAYEINKIWKENGINVKIVIPEDMIRYDQSFKDQY 118
+ V + A G E ++ + + A +EI P I+ +Q D
Sbjct: 68 VTIVIWHAIGPNE----LKAFEDLIAEFEIE-------------YPNIDIQLEQK-ADLE 109
Query: 119 QEFLSKQPLGQAGDFFVNSYAFLPNLAEEGYILDITDYAKAYQSVLNDFYPSLLEAAKYK 178
+ P GQ D F+ ++ ++ AE G + I +Y +LN F P A +Y
Sbjct: 110 TSLKAAIPAGQGPDLFMWAHDWIGKFAEAGLLEPIDEYIT--PEILNKFSPMAQNAIEYG 167
Query: 179 GRLYGLPQDTEARPLYIRKDVAKCVGLDVSTLPDKVKNGEFTWSDVYEWAKKAKEKGCAE 238
G Y +P E L KD+ V N T+ ++ +K +
Sbjct: 168 GHYYAMPYAAETVALIYNKDM--------------VPNPPKTFDEMKAIMEKYYNEAEGT 213
Query: 239 WGLIHRKGSAHPDLIQFIFAFNGKLYDEKTGKLVLDVPAVYKWLYVEWKFAQDGLLPEDI 298
+GL L ++ AF G +D+KT LD P + +KF + + P
Sbjct: 214 YGLATPMDPYF--LSGWVHAFGGYYFDDKTKTPGLDKPETLQ----GFKFFFEQIFPYVA 267
Query: 299 MSWDWAKQIHPTVVTGKTLFFIGGTW 324
+ D+ Q+ GK I G W
Sbjct: 268 KTQDYNAQV-SLFHDGKAPMMINGPW 292
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217269420
Number of Sequences: 2977
Number of extensions: 9811551
Number of successful extensions: 32223
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32202
Number of HSP's gapped (non-prelim): 7
length of query: 545
length of database: 189,106,746
effective HSP length: 55
effective length of query: 490
effective length of database: 156,189,961
effective search space: 76533080890
effective search space used: 76533080890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)