BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2442 (fdhA-like) DE:FORMATE DEHYDROGENASE ALPHA SUBUNIT
related protein
(665 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75124 formate dehydrogenase alpha chain related protein PA... 1340 0.0
pir||C71007 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 1072 0.0
gb|AAC44820.1| (U52681) FdhA [Methanobacterium thermoformicicum] 587 e-166
emb|CAC11193.1| (AL445063) probable formate dehydrogenase, alpha... 533 e-150
pir||A59348 formate dehydrogenase (EC 1.2.1.2) alpha chain MJ135... 533 e-150
pir||B75061 alpha chain of formate dehydrogenease PAB1389 - Pyro... 514 e-144
sp|P06131|FDHA_METFO FORMATE DEHYDROGENASE ALPHA CHAIN >gi|80907... 509 e-143
pir||B69074 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 508 e-143
gb|AAB18330.1| (U73807) formate dehydrogenase alpha subunit [Moo... 506 e-142
pir||S57430 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 494 e-138
gb|AAC43173.1| (U00006) formate dehydrogenase-H alpha subunit [E... 489 e-137
sp|P07658|FDHF_ECOLI FORMATE DEHYDROGENASE H (FORMATE-HYDROGEN-L... 489 e-137
pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Col... 485 e-136
gb|AAA23754.1| (M13563) formate dehydrogenase [Escherichia coli] 483 e-135
gb|AAD13462.1| (AE000481) selenopolypeptide subunit of formate d... 476 e-133
gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sul... 458 e-127
gb|AAK41292.1| Formate dehydrogenase Alpha subunit (fdhF-1) [Sul... 440 e-122
emb|CAC11567.1| (AL445064) formate dehydrogenase related protein... 434 e-120
pir||E69850 formate dehydrogenase homolog yjgC - Bacillus subtil... 432 e-120
gb|AAB94932.1| (AF039208) putative formate dehydrogenase alpha s... 427 e-118
pir||H64468 formate dehydrogenase (EC 1.2.1.2) alpha chain - Met... 415 e-115
gb|AAG37855.1|AF298190_5 (AF298190) NAD-dependent formate dehydr... 392 e-108
emb|CAA11235.1| (AJ223295) NAD-dependent formate dehydrogenase a... 389 e-107
sp|P42434|NASC_BACSU ASSIMILATORY NITRATE REDUCTASE CATALYTIC SU... 386 e-106
pir||D69974 formate dehydrogenase homolog yrhE - Bacillus subtil... 381 e-104
gb|AAB80862.1| (U93874) formate dehydrogenase chain A [Bacillus ... 381 e-104
pir||I40028 nitrate reductase (narB) - Bacillus subtilis (fragme... 379 e-104
pir||T35003 probable respiratory chain oxidoreductase - Streptom... 364 2e-99
dbj|BAB04334.1| (AP001509) assimilatory nitrate reductase (catal... 363 3e-99
pir||A83424 assimilatory nitrate reductase PA1779 [imported] - P... 342 6e-93
sp|P39458|NARB_SYNP7 NITRATE REDUCTASE >gi|480267|pir||S36605 ni... 336 6e-91
pir||S57966 NarB protein - Oscillatoria chalybea >gi|2147816|pir... 332 1e-89
gb|AAD45942.1|AF089813_5 (AF089813) nitrate reductase [Synechoco... 330 2e-89
gb|AAB40292.1| (L49163) narB [Anabaena PCC7120] 329 5e-89
sp|P73448|NARB_SYNY3 NITRATE REDUCTASE >gi|7431434|pir||S77385 n... 328 9e-89
pir||C81298 probable formate dehydrogenase (EC 1.2.1.2) large ch... 320 4e-86
gb|AAF74559.1|AF203789_1 (AF203789) assimilatory nitrate reducta... 316 4e-85
sp|P81186|NAPA_DESDE PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 314 2e-84
pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From D... 314 3e-84
pir||B70320 nitrate reductase (EC 1.7.99.4) chain A narB - Aquif... 313 5e-84
pir||S18213 formate dehydrogenase (EC 1.2.1.2) chain A - Wolinel... 309 9e-83
emb|CAB73932.1| (AL139078) putative formate dehydrogenase large ... 307 3e-82
gb|AAA25100.2| (L06800) nitrate reductase large subunit [Klebsie... 294 2e-78
emb|CAB69761.1| (AL137187) putative reductase [Streptomyces coel... 263 5e-69
gi|11498802 molybdopterin oxidoreductase, molybdopterin binding ... 254 2e-66
dbj|BAA74791.1| (AB017192) nitrate reductase catalytic subunit [... 254 3e-66
gb|AAA16399.1| (U00008) yojC [Escherichia coli] 238 1e-61
sp|P33937|NAPA_ECOLI PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 236 8e-61
pir||D82430 periplasmic nitrate reductase VCA0678 [imported] - V... 235 1e-60
sp|P46448|FDXG_HAEIN FORMATE DEHYDROGENASE MAJOR SUBUNIT (FORMAT... 229 6e-59
sp|Q56350|NAPA_PARDT PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 226 5e-58
sp|P32176|FDOG_ECOLI FORMATE DEHYDROGENASE-O, MAJOR SUBUNIT (FOR... 225 1e-57
emb|CAA38512.1| (X54696) formate dehydrogenase H [Enterobacter a... 224 2e-57
pir||D75123 probable formate dehydrogenase PAB0532 - Pyrococcus ... 223 6e-57
emb|CAB71267.1| (AL138598) putative oxidoreductase. [Streptomyce... 221 2e-56
dbj|BAB06249.1| (AP001515) formate dehydrogenase alpha chain [Ba... 218 2e-55
sp|P24183|FDNG_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, M... 215 9e-55
dbj|BAA15989.1| (D90850) Probable nitrate reductase (EC 1.7.99.4... 212 8e-54
gb|AAD13456.1| (AE000464) formate dehydrogenase-O, major subunit... 212 1e-53
pir||B49847 nitrate reductase (EC 1.7.99.4) nasA - Klebsiella pn... 211 2e-53
dbj|BAA15123.1| (D90788) Formate dehydrogenase, nitrate-inducibl... 211 2e-53
pir||A71008 hypothetical protein PH1359 - Pyrococcus horikoshii ... 210 4e-53
pir||G70389 formate dehydrogenase (EC 1.2.1.2) alpha chain - Aqu... 210 5e-53
sp|Q06457|NASA_KLEPN NITRATE REDUCTASE 208 1e-52
sp|P37519|YYAE_BACSU HYPOTHETICAL 73.9 KD PROTEIN IN RPSF-SPO0J ... 205 1e-51
pir||G69895 formate dehydrogenase homolog yoaE - Bacillus subtil... 204 3e-51
gb|AAD13438.1| (AE000244) formate dehydrogenase-N, nitrate-induc... 203 7e-51
gb|AAB03027.1| (L19201) formate dehydrogenase-O alpha subunit [E... 202 9e-51
gb|AAC07107.1| (AE000720) formate dehydrogenase alpha subunit [A... 197 4e-49
gb|AAC79443.1| (AF083948) periplasmic nitrate reductase large su... 189 7e-47
gb|AAD46689.1|AF040988_4 (AF040988) periplasmic nitrate reductas... 189 7e-47
gb|AAC23522.1| (AF069545) periplasmic nitrate reductase precurso... 189 9e-47
sp|P39185|NAPA_ALCEU PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 188 2e-46
sp|Q53176|NAPA_RHOSH PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 181 3e-44
emb|CAA03851.1| (AJ000006) nitrate reductase [Shewanella frigidi... 180 4e-44
pir||C75525 molybdopterin oxidoreductase - Deinococcus radiodura... 178 1e-43
sp|P56914|NUG2_RHIME NADH DEHYDROGENASE I CHAIN G 2 (NADH-UBIQUI... 175 1e-42
pir||H64903 hypothetical protein b1501 - Escherichia coli >gi|17... 175 2e-42
dbj|BAA15182.1| (D90793) Formate dehydrogenase a chain (EC 1.2.1... 175 2e-42
pir||F83499 periplasmic nitrate reductase protein NapA PA1174 [i... 174 3e-42
sp|P37600|PHSA_SALTY THIOSULFATE REDUCTASE PRECURSOR >gi|2126173... 172 1e-41
emb|CAB92217.1| (AL356592) nitrate reductase (fragment). [Strept... 169 1e-40
dbj|BAB06572.1| (AP001516) formate dehydrogenase [Bacillus halod... 168 2e-40
pir||T35749 probable formate dehydrogenase - Streptomyces coelic... 167 4e-40
gb|AAC44462.1| (U60056) CbbBc [Ralstonia eutropha] 166 6e-40
sp|Q10821|YT00_MYCTU HYPOTHETICAL 84.6 KDA PROTEIN RV2900C >gi|7... 161 2e-38
sp|P31075|PSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN A PRECURSOR (SU... 161 3e-38
pir||E64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A1 pr... 160 6e-38
pir||I40449 hypothetical protein 6 (replication origin region) -... 157 3e-37
pir||S03785 dimethylsulfoxide reductase (EC 1.8.-.-) chain A pre... 157 5e-37
sp|P18775|DMSA_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 157 5e-37
gb|AAD39508.1| (AF146729) formate dehydrogenase H [Salmonella ty... 151 2e-35
pir||D83205 probable oxidoreductase PA3534 [imported] - Pseudomo... 143 5e-33
gb|AAD37319.1|AF135170_10 (AF135170) dimethyl sulfoxide reductas... 143 5e-33
gb|AAB06233.1| (U26665) dimethyl sulphoxide reductase subunit A ... 141 2e-32
pir||B69076 catalytic subunit of nitrate reductase (flp) - Metha... 141 2e-32
sp|P45004|DMSA_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 141 3e-32
pir||F64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A2 pr... 140 5e-32
sp|P77783|YNFF_ECOLI PUTATIVE DIMETHYL SULFOXIDE REDUCTASE CHAIN... 140 5e-32
emb|CAB76275.1| (AL158057) putative oxidoreductase. [Streptomyce... 139 1e-31
pir||T36812 probable dehydrogenase - Streptomyces coelicolor >gi... 138 2e-31
emb|CAA06231.1| (AJ004933) periplasmic nitrate reductase, large ... 137 3e-31
pir||B83307 probable molybdopterin oxidoreductase PA2714 [import... 132 9e-30
pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rh... 132 1e-29
emb|CAA64689.1| (X95407) dimethyl sulfoxide/trimethylamine N-oxi... 132 2e-29
pdb|1DMS| Structure Of Dmso Reductase 132 2e-29
pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - S... 132 2e-29
pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus W... 131 2e-29
sp|Q52675|DMSA_RHOCA DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMS... 131 3e-29
pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buf... 131 3e-29
sp|P44798|BISC_HAEIN PROBABLE BIOTIN SULFOXIDE REDUCTASE (BDS RE... 130 6e-29
gi|11499961 molybdopterin oxidoreductase, molybdopterin binding ... 129 1e-28
gb|AAB94874.1| (AF016236) DMSO/TMAO-reductase [Rhodobacter sphae... 128 2e-28
sp|Q57366|DMSA_RHOSH DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMS... 126 9e-28
pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaero... 126 9e-28
pir||B70838 hypothetical protein Rv0197 - Mycobacterium tubercul... 126 9e-28
emb|CAA06794.1| (AJ005974) trimethylamine-N-oxide reductase [She... 125 2e-27
gb|AAG31648.1|AF314590_2 (AF314590) periplasmic nitrate reductas... 124 3e-27
sp|P33225|TORA_ECOLI TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR ... 122 2e-26
prf||2117158A DMSO reductase [Rhodobacter sphaeroides] 120 5e-26
pir||S34222 trimethylamine-N-oxide reductase (EC 1.6.6.9) - Esch... 119 9e-26
sp|O87948|TORA_SHEMA TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR ... 119 1e-25
gb|AAA23522.1| (M34827) biotin sulfoxide reductase (bisC) [Esche... 114 3e-24
pir||S47772 biotin sulfoxide reductase (EC 1.-.-.-) 1 - Escheric... 114 3e-24
sp|P20099|BISC_ECOLI BIOTIN SULFOXIDE REDUCTASE 1 (BDS REDUCTASE... 114 3e-24
sp|Q9XAR0|NUOG_STRCO NADH DEHYDROGENASE I CHAIN G (NADH-UBIQUINO... 112 1e-23
pir||D81349 nitrate reductase (EC 1.7.99.4), periplasmic Cj0780 ... 111 3e-23
pir||H82137 biotin sulfoxide reductase VC1950 [imported] - Vibri... 108 2e-22
gb|AAG19284.1| (AE005024) dimethylsulfoxide reductase; DmsA [Hal... 106 8e-22
sp|Q60314|FDHA_METJA PUTATIVE FORMATE DEHYDROGENASE ALPHA CHAIN ... 104 2e-21
emb|CAA67410.1| (X98916) beta-subunit of formylmethanofuran dehy... 95 2e-18
emb|CAA67419.1| (X98917) formylmethanofuran dehydrogenase FwuB [... 91 4e-17
pir||E70916 probable bisC protein - Mycobacterium tuberculosis (... 89 1e-16
gi|11499513 tungsten formylmethanofuran dehydrogenase, subunit B... 88 3e-16
pir||S57458 formylmethanofuran dehydrogenase (EC 1.2.99.5) (tung... 84 4e-15
pir||S62201 formylmethanofuran dehydrogenase (EC 1.2.99.5) (moly... 82 2e-14
pir||A69075 formylmethanofuran dehydrogenase (EC 1.2.99.5) (tung... 82 3e-14
pir||A69223 formylmethanofuran dehydrogenase (EC 1.2.99.5) (moly... 81 5e-14
emb|CAA08788.1| (AJ009689) molybdenum formylmethanofuran dehydro... 81 5e-14
emb|CAA08785.1| (AJ009688) tungsten formylmethanofuran dehydroge... 79 1e-13
sp|P54934|BISC_RHOSH BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) ... 79 2e-13
gb|AAK41791.1| Molybdopterin oxidoreductase, molybdopterin bindi... 71 4e-11
>pir||E75124 formate dehydrogenase alpha chain related protein PAB2442 -
Pyrococcus abyssi (strain Orsay)
>gi|5458221|emb|CAB49710.1| (AJ248285) FORMATE
DEHYDROGENASE ALPHA SUBUNIT related protein [Pyrococcus
abyssi]
Length = 665
Score = 1340 bits (3431), Expect = 0.0
Identities = 665/665 (100%), Positives = 665/665 (100%)
Query: 1 MFIGDRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLR 60
MFIGDRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLR
Sbjct: 1 MFIGDRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLR 60
Query: 61 YPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
YPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL
Sbjct: 61 YPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
Query: 121 LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY 180
LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY
Sbjct: 121 LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY 180
Query: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS
Sbjct: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
Query: 241 RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE
Sbjct: 241 RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
Query: 301 NVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS 360
NVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS
Sbjct: 301 NVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS 360
Query: 361 LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ
Sbjct: 361 LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
Query: 421 DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE
Sbjct: 421 DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
Query: 481 LDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARL 540
LDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARL
Sbjct: 481 LDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARL 540
Query: 541 IAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKY 600
IAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKY
Sbjct: 541 IAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKY 600
Query: 601 GIKDGDLVKVETRRGSIVLKAKISKVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSA 660
GIKDGDLVKVETRRGSIVLKAKISKVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSA
Sbjct: 601 GIKDGDLVKVETRRGSIVLKAKISKVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSA 660
Query: 661 RIRKI 665
RIRKI
Sbjct: 661 RIRKI 665
>pir||C71007 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Pyrococcus horikoshii >gi|3257776|dbj|BAA30459.1|
(AP000006) 679aa long hypothetical formate dehydrogenase
[Pyrococcus horikoshii]
Length = 679
Score = 1072 bits (2741), Expect = 0.0
Identities = 511/658 (77%), Positives = 583/658 (87%), Gaps = 1/658 (0%)
Query: 8 IRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
+RVVCPYCGFGCNLLIDPK+ +VKPY GEPNRGKLCPKGL+ALE V SKDRL++PLKK G
Sbjct: 9 VRVVCPYCGFGCNLLIDPKSRRVKPYPGEPNRGKLCPKGLYALEHVFSKDRLKHPLKKEG 68
Query: 68 SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNID 127
F RI W+ AI EI++KL+EI E YGP +IAFIASSKV+NEENYL+QKIARLLGTNN+D
Sbjct: 69 ESFRRISWEKAISEISTKLKEIIEDYGPGSIAFIASSKVTNEENYLIQKIARLLGTNNVD 128
Query: 128 NCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRK 187
NCARLCHE+SVHALK+TLG GVQTNPYSDLE F AIMIWGYNPAETHPVVM YIL AKR+
Sbjct: 129 NCARLCHESSVHALKLTLGDGVQTNPYSDLERFGAIMIWGYNPAETHPVVMQYILGAKRR 188
Query: 188 GAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSE 247
G KIIVID+RET TMR ADY+L+I PGTDITLANA+MNVII LY+KEFV SRT GFSE
Sbjct: 189 GGKIIVIDIRETLTMRFADYRLVIKPGTDITLANAIMNVIIEGNLYNKEFVESRTTGFSE 248
Query: 248 VKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVID 307
++M VKKYTPEYAEKVTG+ A+LIREVA FAKAGSGAIMWGMG+TQ +SGVENV+A++D
Sbjct: 249 IRMGVKKYTPEYAEKVTGVPAELIREVAEVFAKAGSGAIMWGMGITQQISGVENVLALVD 308
Query: 308 MALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDI 367
+ALLLGY G+KGGLYPMRGQNNVQGAAYMG LSEFLPGY+PL+DS FR++VA +WGVED+
Sbjct: 309 IALLLGYFGEKGGLYPMRGQNNVQGAAYMGTLSEFLPGYIPLSDSKFRRKVAKMWGVEDL 368
Query: 368 PTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRT 427
PTERG YLTE WDAIL+G++KALYI+GENPAVS+AN LKVRKAL KL+LLVVQDLFLT+T
Sbjct: 369 PTERGFYLTEYWDAILKGDLKALYIVGENPAVSDANALKVRKALTKLDLLVVQDLFLTKT 428
Query: 428 ARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGFP 487
ARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGE+KPDWEIL +L + L L GF
Sbjct: 429 ARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGESKPDWEILVMLARALGLKGFD 488
Query: 488 YEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIM 547
Y KVEDIT EYFK+FP L S+EELK + GIIIP RL+ F T DGKAR +AVEQIM
Sbjct: 489 YSKVEDITREYFKLFPALRNRSIEELK-ARGIIIPAPRLYVDSFNTHDGKARFVAVEQIM 547
Query: 548 PWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDL 607
PWE+PNGEYPLILTTVR+++HYNTGEMT RSPSL K+ E VV+IS DA++YGI+DGD
Sbjct: 548 PWEEPNGEYPLILTTVRLINHYNTGEMTRRSPSLAKMSGESVVFISREDAREYGIEDGDY 607
Query: 608 VKVETRRGSIVLKAKISKVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSARIRKI 665
V VETRRGS+ LKAKI+K+++GVI +PFHFDAN+LTNDALNKAGTPE K+S+ARIRKI
Sbjct: 608 VIVETRRGSLRLKAKIAKIQKGVIAIPFHFDANLLTNDALNKAGTPEFKFSAARIRKI 665
>gb|AAC44820.1| (U52681) FdhA [Methanobacterium thermoformicicum]
Length = 681
Score = 587 bits (1498), Expect = e-166
Identities = 318/677 (46%), Positives = 436/677 (63%), Gaps = 21/677 (3%)
Query: 8 IRVVCPYCGFGCNL---LIDPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPL 63
I VCPYCG GC L ID K V+P+K P N GKLCPKG + +FV DRL PL
Sbjct: 6 IPTVCPYCGCGCGLNVVTIDGKVEGVEPWKRHPLNEGKLCPKGNFSYQFVGRDDRLTKPL 65
Query: 64 KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLG 122
K +F WD+A IASKL E + P+++AF+AS++ +NEENYLLQK AR ++G
Sbjct: 66 IKENGEFREASWDEATSLIASKLEEYRGE-DPDSLAFLASARCTNEENYLLQKFARAVIG 124
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
T N+D+CARLCH SV L T G+G TN SD+E I I G N AE HP++ +L
Sbjct: 125 TQNVDHCARLCHGPSVAGLAKTFGSGAMTNSISDIEESSCIFIIGSNTAEQHPLIWRRVL 184
Query: 183 NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
AK GAK+IV D R + T ++AD L PGTD+ L NA+MNVII EGL D+EF+ RT
Sbjct: 185 RAKANGAKLIVADPRVSPTAKMADIYLPFKPGTDVPLMNAMMNVIIEEGLEDREFIEKRT 244
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
F ++K VK Y PE AEK+T A IRE A E+AKA S AI++ MG+TQH++G +NV
Sbjct: 245 KDFEKLKETVKNYKPEEAEKITLTPADKIREAAIEYAKADSAAILFAMGITQHITGTDNV 304
Query: 303 IAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
++ ++A+L G VG +G G+ P+RGQNNVQGA MGAL F PGY + + ++++
Sbjct: 305 VSTANLAMLTGNVGKRGAGVNPLRGQNNVQGACDMGALPAFYPGYQKVIEEDATEKMSCA 364
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
WG D+ GL + E+ +A EG++KA+YIMGENP VS+ ++ V+++L+ LE LVVQD
Sbjct: 365 WGCSDLKCTPGLTVVEMMNAAAEGKLKAMYIMGENPMVSDPDIQHVKESLENLEFLVVQD 424
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+FLT TA A +LPA+A+ EK G+Y ++ERR+Q+ K D PGEAK DW+I+ + ++
Sbjct: 425 IFLTETAELADVVLPASAWSEKNGTYTSTERRVQYIRKAADAPGEAKDDWQIICEIANKM 484
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKR--------LHTIRFQT 533
GF + EDI EE ++ P+ AG++ E L G+ P LHT +F T
Sbjct: 485 GADGFKFSSAEDIFEEIREVTPQYAGMNPERLVKPEGLHWPCPDETHPGTPILHTEQFAT 544
Query: 534 PDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYIS 593
PDG VE P E P+ EYP ILTT R++ HY+TG MT RS +L + + V I+
Sbjct: 545 PDGLGIFFPVEYREPAETPDSEYPFILTTGRIIFHYHTGTMTRRSETLDREVPTGFVEIN 604
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILTN-DALN 648
+ DA + GIK+GD+VKV+TRRG I + A+++ ++ +GV+ +PFHF AN+LT+ D L+
Sbjct: 605 DEDALELGIKNGDMVKVKTRRGEIEITARVTPEIMKGVLFIPFHFAECAANMLTSADELD 664
Query: 649 -KAGTPELKYSSARIRK 664
+A PELK S+A I K
Sbjct: 665 PEAKMPELKVSAASISK 681
>emb|CAC11193.1| (AL445063) probable formate dehydrogenase, alpha subunit
[Thermoplasma acidophilum]
Length = 702
Score = 533 bits (1359), Expect = e-150
Identities = 287/673 (42%), Positives = 414/673 (60%), Gaps = 29/673 (4%)
Query: 11 VCPYCGFGCNLLIDPKT--LKVKPY-KGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
VCPYCG GC + +D V Y + N GKLC KG L + S DR+ P+ + G
Sbjct: 38 VCPYCGTGCQIEVDYSGDHYTVHGYTRSAVNEGKLCIKGYQGLSYASSHDRITSPMLRSG 97
Query: 68 SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNID 127
+V++ WD+AI + +L+EI++RYGP+AIAF AS+K +NEENYLLQKIAR++GTNN+D
Sbjct: 98 DTWVKVSWDEAIDYVVKRLKEIRDRYGPDAIAFQASAKCTNEENYLLQKIARMIGTNNVD 157
Query: 128 NCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRK 187
+CAR CH ++V L TLG T L++ + + G N E HP++ I+ K+
Sbjct: 158 HCARSCHSSTVAGLIRTLGTAAATGSIKSLKSTQTFFVIGSNTTEQHPIIGTTIIKQKKA 217
Query: 188 GAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSE 247
G K+IV D R T +AD L PG+D+ L N++M VI+ GL D EF++SRT GF
Sbjct: 218 GKKLIVADPRRTKLASIADVFLQFKPGSDVALLNSMMFVILKRGLIDSEFIKSRTEGFEA 277
Query: 248 VKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVID 307
++KY PE E++TG+ L+ + A +A AI++GMG+TQH+ G ENV++V +
Sbjct: 278 FAEEIEKYPPELTEQITGVPPDLVEKAAEIYASNRPSAILYGMGITQHIHGTENVMSVSN 337
Query: 308 MALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVED 366
+AL+ G +G G G++P+RGQNNVQG++ MGALSEF PGYVP DS ++ +W +
Sbjct: 338 LALMTGNLGRYGSGIFPLRGQNNVQGSSDMGALSEFYPGYVP-PDSPGVEKFERIWEAK- 395
Query: 367 IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTR 426
+P + GL L+E++DA ++G VKA+Y+MGENP ++EAN+ V + L+ LEL VVQD+F+T
Sbjct: 396 LPRKVGLMLSEMFDAAIDGRVKAIYLMGENPVITEANLSDVERGLKNLELFVVQDIFMTD 455
Query: 427 TARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGF 486
TAR+AH ILPA + EKEG++ N+ERRIQ V DPPG+A+PDW ILS + ++
Sbjct: 456 TARYAHVILPATSALEKEGTFTNTERRIQRVVPVKDPPGDARPDWWILSQIYSKI-FDRE 514
Query: 487 PYEKVEDITEEYFKMFPELAGISVEEL-----------KNSNGIIIPYKRLHTIRFQTPD 535
Y EDI E P +G+ +L ++ G I LH +F
Sbjct: 515 AYRSPEDIFNEIRLAIPNYSGVRYSDLYPDGKQWPINDQHPEGAEI----LHVDKFAR-- 568
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISES 595
G R +A+ P E P+ EYP ILTT R H+++G MT RS L + P V IS +
Sbjct: 569 GLGRFMAIPYKSPSESPDEEYPFILTTGRNYYHWHSGTMTRRSEILERESPNPYVEISVN 628
Query: 596 DAKKYGIKDGDLVKVETRRGSIVLKAKI-SKVKEGVIVVPFHFD---ANILTNDALNK-A 650
DAKK I++G + +E+R GSI L A + SK+ +G++ VPFHF N+L + L+ +
Sbjct: 629 DAKKLSIRNGQTITIESRHGSIKLPAMVTSKIPDGIVFVPFHFKEARVNLLVGENLDPYS 688
Query: 651 GTPELKYSSARIR 663
PE K + +++
Sbjct: 689 KIPEFKVVAVKVK 701
>pir||A59348 formate dehydrogenase (EC 1.2.1.2) alpha chain MJ1351 [similarity]
- Methanococcus jannaschii
Length = 686
Score = 533 bits (1357), Expect = e-150
Identities = 302/680 (44%), Positives = 426/680 (62%), Gaps = 30/680 (4%)
Query: 6 RVIRVVCPYCGFGCNLLI---DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRY 61
+++ +CPYCG GC L + D + + + P K P N GKLC KG + +F+ SKDRL
Sbjct: 17 KIVNTICPYCGVGCGLGLVVKDGRVIGIHPNKRHPINEGKLCAKGNYCYQFIHSKDRLTK 76
Query: 62 PLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL- 120
PL K S FV W+ A+ IA L+ K+ G F +S++ +NE+NY+LQK AR+
Sbjct: 77 PLIKKESGFVETTWNKALEVIAENLKTYKDEIG-----FFSSARCTNEDNYILQKFARVA 131
Query: 121 LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY 180
L TNNID+CARLCH A+V + G+G TN D+E I+I G N E HP++
Sbjct: 132 LKTNNIDHCARLCHSATVTGMSACFGSGAMTNSIEDIELADCILIIGSNTFEQHPLIARR 191
Query: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
I+ AK KGAKIIVID R T T + +D L I PGT++ L NA++NVII E L DKEF+++
Sbjct: 192 IMRAKDKGAKIIVIDPRRTITAKNSDIYLQIIPGTNVALINAMINVIIKENLIDKEFIKN 251
Query: 241 RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
RT GF ++K +KKYTPEYA K+ G++ +LI E A+ + A +I++ MG+TQ GV+
Sbjct: 252 RTEGFEKLKEIIKKYTPEYASKICGVDKELIIESAKIYGNAERASIIYCMGVTQFTHGVD 311
Query: 301 NVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVA 359
V A+ ++A++ G +G +G G+ P+RGQNNVQGA MGAL PGY + D K
Sbjct: 312 AVKALCNLAMITGNIGKEGTGVNPLRGQNNVQGACDMGALPNVFPGYQKVEDG--YKLFE 369
Query: 360 SLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
W D+ GL + E+ D + +K LYIMGENP VS+ +V V KAL+ L+ LVV
Sbjct: 370 EYWKT-DLNPNSGLTIPEMIDESGK-NIKFLYIMGENPIVSDPDVKHVEKALKSLDFLVV 427
Query: 420 QDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGK 479
QD+FLT TA+ A +LPAA + EK+G++ N+ERR+Q K +PPGEA DW I+ L +
Sbjct: 428 QDIFLTETAKLADVVLPAACWAEKDGTFTNTERRVQLIRKAVNPPGEALEDWIIIKKLAE 487
Query: 480 ELDL-PGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIP--------YKRLHTIR 530
+L F Y KVEDI E K+ P+ GI+ + LK +GI P K LH +
Sbjct: 488 KLGYGDKFNYNKVEDIFNEIRKVTPQYRGITYKRLK-IDGIHWPCLDENHSGTKILHKDK 546
Query: 531 FQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVV 590
F T +G+ ++ VE E P+ +YP ILTT R++ HY+TG MT R +LV+ ++EP +
Sbjct: 547 FLTDNGRGKIFPVEYREVAELPDKDYPFILTTGRIIFHYHTGTMTRRCKNLVEEINEPFI 606
Query: 591 YISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHF---DANILTNDA 646
I+ DAK I++GDLVKV +RRG I KA+I++ +K+GV+ +PFHF + N+LTN A
Sbjct: 607 EINPDDAKSLKIENGDLVKVISRRGEITAKARITEDIKKGVVFMPFHFVEANPNVLTNTA 666
Query: 647 LNK-AGTPELKYSSARIRKI 665
L++ PELK + +I +I
Sbjct: 667 LDELCKIPELKVCAVKIERI 686
>pir||B75061 alpha chain of formate dehydrogenease PAB1389 - Pyrococcus abyssi
(strain Orsay) >gi|5458896|emb|CAB50383.1| (AJ248287)
ALPHA SUBUNIT OF FORMATE DEHYDROGENEASE [Pyrococcus
abyssi]
Length = 686
Score = 514 bits (1310), Expect = e-144
Identities = 293/689 (42%), Positives = 421/689 (60%), Gaps = 31/689 (4%)
Query: 3 IGDRVIRVVCPYCGFGCNLLID-----PKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKD 57
+ +++I VVCP+C GC L I P+ ++ PN+GKLCPKG+ + + + D
Sbjct: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
Query: 58 RLRYPLKKVGSD----FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYL 113
RL+ PLK+VG F I W++AI IA K +EI E +GP A+AF+ S + S E+NYL
Sbjct: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
Query: 114 LQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAET 173
LQK+AR LGTNN++ RLC ++ A G QTNP+ D+ K I+IWGYNPA T
Sbjct: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
Query: 174 HPVVM-DYILNA-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEG 231
+PV+ Y A GAK+IV+D +T T + A L PGTD+ +A A+++VII E
Sbjct: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
Query: 232 LYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMG 291
LYDK+FV R F + AV+KYTPE+AEK++G+ A LI E A FA G+ ++ G
Sbjct: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
Query: 292 LTQHVSGVENVIAVIDMALLLGYVGDKG---GLYPMRGQNNVQGAAYMGALSEFLPGYVP 348
+ QH +G +A+ ++ + G +G +G G+ P G + AA G LPG VP
Sbjct: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIP--GAHCGLCAAVPGVNCAQLPGPVP 358
Query: 349 LTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVR 408
L + T K+ + LWG E +P++ GL+ ++DA+LEG++K +YIMG+NPA S AN K+
Sbjct: 359 LNEET-AKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIE 416
Query: 409 KALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAK 468
+AL K +VV D+F T T ++A +LPAAA+ EK G+ + RR+ SF+ PPGEAK
Sbjct: 417 EAL-KRAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAK 475
Query: 469 PDWEILSLLGKELDL-PGFPYEKVEDITEEYFKMFPELAGISVEEL-KNSNGIIIP---- 522
PDWEI+ +L K + L F Y V+D+ E + P L G + E L KN G + P
Sbjct: 476 PDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDE 535
Query: 523 ---YKRLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSP 579
RL F T GKA LI VE P E P+ EYP LT R++ ++TG M+ R+
Sbjct: 536 NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTK 595
Query: 580 SLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHFD 638
SL K P V I+E DAK+ GI+ GDLV+VETRRGS+V +A++++ ++EGV+ +P+H+
Sbjct: 596 SLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWG 655
Query: 639 ANILT-NDALNK-AGTPELKYSSARIRKI 665
N LT +DA+++ + PELK ++ RI K+
Sbjct: 656 FNYLTKDDAIDEFSKMPELKTAACRISKV 684
>sp|P06131|FDHA_METFO FORMATE DEHYDROGENASE ALPHA CHAIN >gi|80907|pir||A24698 formate
dehydrogenase (EC 1.2.1.2) chain A - Methanobacterium
formicicum >gi|149708|gb|AAA72182.1| (J02581) formate
dehydrogenase A (fdhA) [Methanobacterium formicicum]
Length = 684
Score = 509 bits (1297), Expect = e-143
Identities = 288/682 (42%), Positives = 405/682 (59%), Gaps = 27/682 (3%)
Query: 6 RVIRVVCPYCGFGC--NLLI-DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRY 61
+ + +CPYCG GC NL++ D K + V+P+K P N GKLCPKG E + +DRL
Sbjct: 4 KYVPTICPYCGVGCGMNLVVKDEKVVGVEPWKRHPVNEGKLCPKGNFCYEIIHREDRLTT 63
Query: 62 PLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLL 121
PL K +F WD+A IASKL Y PN I F ++ NE Y+ QK AR++
Sbjct: 64 PLIKENGEFREATWDEAYDLIASKLGA----YDPNEIGFFCCARSPNENIYVNQKFARIV 119
Query: 122 -GTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY 180
GT+NID+CARLCH +V L + G+G TN Y+ E+ I G N E HP+V
Sbjct: 120 VGTHNIDHCARLCHGPTVAGLAASFGSGAMTNSYASFEDADLIFSIGANSLEAHPLVGRK 179
Query: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
++ AK GA IV D R T T + AD + GTD+ L NA+MNVIISEGL DKEF+
Sbjct: 180 LMRAKMNGAYFIVADPRYTPTAKQADQYIPFKTGTDVALMNAMMNVIISEGLEDKEFIEK 239
Query: 241 RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
RT + E+K V KYTPE AE++T + A +IR++A ++AKA AI++ +G+T+H GV+
Sbjct: 240 RTKNYEELKEVVSKYTPEMAEEITQVPADVIRDIAIKYAKADKAAIVYSLGITEHSHGVD 299
Query: 301 NVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVA 359
NV+ ++A+L G +G G G+ P+RGQNNVQGA MGAL PGY + D + V
Sbjct: 300 NVMQTANLAMLTGNIGRLGTGVNPLRGQNNVQGACDMGALPTDYPGYRKVADQEVMEDVT 359
Query: 360 SLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
WG D+ E GL + E+ DA +G++K LYI GE+P +S+ + V +AL L+ VV
Sbjct: 360 CTWGCSDLGCEPGLKIPEMIDAAAKGDLKVLYITGEDPVISDPDTHHVEEALNNLDFFVV 419
Query: 420 QDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGK 479
QD+F+T TA FA +LPAA + E+EG++ N ERR+Q K D PGE+K DWEI L K
Sbjct: 420 QDIFMTDTAEFADVVLPAACWAEQEGTFTNGERRVQLIRKAVDAPGESKYDWEIFCDLAK 479
Query: 480 EL--DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIP--------YKRLHTI 529
++ D F YE +DI EE + P+ AG++ E L + P +H
Sbjct: 480 KMGADPEMFTYESAQDIFEEVRTVTPQYAGMNRERLDRPEALHWPCPSEDHPGTAMMHIE 539
Query: 530 RFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPV 589
+F PDG + +E+ P E P+ EYPLILTT R++ HY+ MT R+ +L + +
Sbjct: 540 KFAHPDGLGIFMPLEEQGPMETPDDEYPLILTTTRLLFHYHAA-MTRRAATLDREVPTGY 598
Query: 590 VYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILTND 645
V I+ DA + GI + + VKV++RRG I + A+++ + +G++ +P HF ANILTN
Sbjct: 599 VEINTEDAAELGIANKEKVKVKSRRGEIEIAARVTDDIVKGIVNIPMHFRECSANILTNA 658
Query: 646 AL--NKAGTPELKYSSARIRKI 665
A K+G PE K + I K+
Sbjct: 659 AAIDPKSGMPEYKACAVAISKM 680
>pir||B69074 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622673|gb|AAB86026.1| (AE000915) formate
dehydrogenase, alpha subunit homolog [Methanobacterium
thermoautotrophicum]
Length = 865
Score = 508 bits (1295), Expect = e-143
Identities = 291/677 (42%), Positives = 407/677 (59%), Gaps = 31/677 (4%)
Query: 8 IRVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPL 63
++ VCPYCG GC + + + +V +G+P NRGKLC KG AL+FV S +RL+ PL
Sbjct: 200 VKTVCPYCGAGCGIYLGVRGDRVVSSRGDPDNPVNRGKLCVKGRFALKFVNSPERLKKPL 259
Query: 64 KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLG 122
KV FV + WD+A+ +A +L E Y A +AS+K +NEENY+LQK R ++
Sbjct: 260 IKVDGRFVEVEWDEALSTVAERLSE----YSGEEFAAVASAKCTNEENYILQKFTRAVML 315
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
+ NID+CARLCH SV +L MTLG+G TN ++LE+ I+ G NP ETHP+ ++
Sbjct: 316 SGNIDHCARLCHAPSVRSLSMTLGSGAMTNSIAELEDSACILAVGTNPTETHPLTAYSVI 375
Query: 183 NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
A R GAK++VID R T LAD L PG+DI L A+ II EGL+D EF+ SRT
Sbjct: 376 RAIRSGAKLVVIDPRRTRISELADIHLQNRPGSDIPLIMAMCRFIIEEGLHDTEFIESRT 435
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
F E + AV E E +TG+ + +R A +A +I++ MG+TQH G +NV
Sbjct: 436 ENFDEFRDAVMALDLEEVESLTGVGVEDMRRAAITYASKKPASIIYSMGITQHAHGTDNV 495
Query: 303 IAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
IA+ ++ALL G +G G+ P+RGQNNVQGA MGAL + LPGY L DS R +
Sbjct: 496 IALSNLALLTGNLGKPSAGINPLRGQNNVQGACDMGALPDLLPGYQTLDDSF---RFSDK 552
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
WG IP G+ L E++DA LEG ++A+YIMGENP +SE K RKAL+ L+ LVVQD
Sbjct: 553 WG-STIPGP-GMTLPEMFDAALEGRLRAMYIMGENPLLSEPETEKTRKALESLDFLVVQD 610
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+F+T TA A +LPA A+ EK+G++ N+ERR+Q K D PGEA+ DWEI+ +L +++
Sbjct: 611 IFMTETAELADVVLPACAWAEKDGTFTNTERRVQLIRKALDAPGEARTDWEIICMLAEKM 670
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIP--------YKRLHTIRFQT 533
GF Y +I +E + P AGIS E L++ GI P + LH+ RF T
Sbjct: 671 GAEGFDYASSSEIFKEIAALVPSYAGISHERLQD-GGIQWPCTSYEHGGTQYLHSERFST 729
Query: 534 PDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYIS 593
P G+A + + + + EYP++L T R + Y+T MT R P L + I+
Sbjct: 730 PTGRASFLLPGYHV--GEVSEEYPMVLVTGRNLYQYHTRSMTGRVPELDSFSDREELLIN 787
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILT-NDALN 648
DA K G++DG V V++ GS+ ++A++S V EGV+ + FHF AN+LT D
Sbjct: 788 PLDAAKLGVEDGGTVLVKSEGGSLEVRARVSGDVMEGVVFMTFHFAETPANVLTGGDRDP 847
Query: 649 KAGTPELKYSSARIRKI 665
+G PELK++ IR +
Sbjct: 848 VSGMPELKFTPVSIRPV 864
>gb|AAB18330.1| (U73807) formate dehydrogenase alpha subunit [Moorella
thermoacetica]
Length = 893
Score = 506 bits (1289), Expect = e-142
Identities = 277/665 (41%), Positives = 415/665 (61%), Gaps = 31/665 (4%)
Query: 8 IRVVCPYCGFGCNLLI---DPKTLKVKPYKG-EPNRGKLCPKGLHALEFVLSKDRLRYPL 63
+R +C YCG GCNL + D K +KV+ Y+ E N G LC KG +++ + DR+ PL
Sbjct: 224 VRSICSYCGVGCNLTLYVKDGKVVKVRGYENPEVNNGWLCVKGRFGFDYIHNPDRITRPL 283
Query: 64 KKVGSD----FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR 119
+ G F W++A+ ++ KL +IK YG A+ F+ S+K +NEENYLLQK+AR
Sbjct: 284 IREGDREKGYFREASWEEALALVSQKLTQIKGSYGSEALGFLCSAKCTNEENYLLQKLAR 343
Query: 120 -LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
+LGTNN+D+CARL H ++V L T G+G TN +D+ + I + G N E HPV+
Sbjct: 344 GVLGTNNVDHCARLXHSSTVAGLATTFGSGAMTNSIADIASADCIFVIGSNTTENHPVIA 403
Query: 179 DYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFV 238
+ A R+GA++IV D R + + L PGTD+ L N L++VII E LYDKEF+
Sbjct: 404 LKVKEAVRRGARLIVADPRRIELVNFSYLWLRQKPGTDLALLNGLLHVIIKEELYDKEFI 463
Query: 239 RSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSG 298
RT GF +K+AV++YTP +VTG+ A I E AR +A+ S I++ MG+TQH++G
Sbjct: 464 AQRTEGFEALKLAVEEYTPAKVSEVTGVPAGDIIEAARTYARGPSSTILYAMGITQHITG 523
Query: 299 VENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKR 357
NV+A+ ++A+ G VG +G G+ P+RGQ+NVQGA MG L LPGY P+TD R +
Sbjct: 524 TANVMALANLAMACGQVGKEGNGVNPLRGQSNVQGACDMGGLPNVLPGYQPVTDPGVRHK 583
Query: 358 VASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELL 417
+ WGV D+P E GL L E+ A EG++K +YI+GENP +++ +V V++AL+ LE L
Sbjct: 584 FSETWGVPDLPGEPGLTLMEMMAAAQEGKLKGMYILGENPVLTDPDVSHVKEALKNLEFL 643
Query: 418 VVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLL 477
VVQD+FLT TAR A +LP A+F EKEG++ ++ERR+Q K +PPGEA+PDW IL+ L
Sbjct: 644 VVQDIFLTETARMADVVLPGASFAEKEGTFTSTERRVQLLHKAIEPPGEARPDWLILNDL 703
Query: 478 GKELDLPGFP--YEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKR--------LH 527
L L G+P Y +I +E + P AGI+ E L++ G+ P LH
Sbjct: 704 ---LLLMGYPRKYSSPGEIMQEIAGLTPSYAGITYERLED-KGLQWPVLSLEHPGTPVLH 759
Query: 528 TIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSE 587
+F G+ +++ P E+P+ EYP + TT R + HY+T ++ +S L ++
Sbjct: 760 REKFSRGYGQFQVVHYRP--PAEEPDEEYPFLFTTGRNLYHYHT-VISRKSRGLEEMCPA 816
Query: 588 PVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFD---ANILT 643
PVV I+++DA + GI++G+++++ +RRG + +KA ++ ++ G + + FHF AN+LT
Sbjct: 817 PVVEINDNDAARLGIREGEMIEIVSRRGKVRVKALVTDRIPRGQVFMNFHFHEAAANLLT 876
Query: 644 NDALN 648
AL+
Sbjct: 877 IAALD 881
>pir||S57430 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanobacterium thermoautotrophicum (strain Marburg)
>gi|2127681|pir||S63554 formate dehydrogenease alpha
chain - Methanobacterium thermoautotrophicum
>gi|871456|emb|CAA61208.1| (X87969) putative alpha
subunit of formate dehydrogenease [Methanobacterium
thermoautotrophicum]
Length = 887
Score = 494 bits (1257), Expect = e-138
Identities = 282/680 (41%), Positives = 408/680 (59%), Gaps = 36/680 (5%)
Query: 8 IRVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPL 63
+R VCPYCG GC + + + +V +G P N+G+LC KG AL+FV S +RL+ PL
Sbjct: 219 VRTVCPYCGAGCEIYLGVRGNRVVSSRGVPDSPVNQGRLCVKGRFALKFVNSPERLKKPL 278
Query: 64 KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLG 122
KV +FV + WD+AI +A +L E Y A +AS+K +NEENYLLQK R ++G
Sbjct: 279 IKVDGEFVEVEWDEAISVVAERLSE----YTGEEFAAVASAKCTNEENYLLQKFTRAVMG 334
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
+ NID+CARLCH S+ L+M+LG+G TN S+L I+ G NP ETHPV ++
Sbjct: 335 SGNIDHCARLCHAPSLTGLRMSLGSGAMTNSISELGAAGCILAVGTNPTETHPVTSYRVI 394
Query: 183 NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
A R A+++V+D R+T LAD L PG+DI L A+ I+ EGL+D EF+ SRT
Sbjct: 395 RALRSRARLVVVDPRKTRLSELADIHLQNRPGSDIPLLMAMCRFILEEGLHDSEFIDSRT 454
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
F + + AV + E++TG+ K IR A +A +I++ MG+TQHV+G NV
Sbjct: 455 EKFEDFRDAVMALDLDEVERITGVNVKDIRRAAIMYASNSPASIIYSMGITQHVNGTGNV 514
Query: 303 IAVIDMALLLGYVGDK-GGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
+A+ ++ALL G +G K G+ P+RGQNNVQGA MGAL + LPGY + ++ + +
Sbjct: 515 LALSNLALLTGNIGIKSAGINPLRGQNNVQGACDMGALPDLLPGYQGIGEAA--GKFSEK 572
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
WG P GL L E++DA +G+++ +YIMGENP +SE ++ + R+AL+ LE LVVQD
Sbjct: 573 WGSPIPPA--GLTLPEMFDAARDGKIRCMYIMGENPLLSEPDIERTREALEGLEFLVVQD 630
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+ LT TA A +LPAA+F EK+G++ N+ERR+Q K D PG+A PDW+I+S++ +
Sbjct: 631 ICLTETAELADVVLPAASFAEKDGTFTNTERRVQLLRKALDAPGDALPDWQIISMIAGRM 690
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKR--------LHTIRFQT 533
F YE I +E ++ P AGIS E LK S GI P LH+ F T
Sbjct: 691 GREDFDYESASRIFDEIRELVPSYAGISHERLK-SGGIQWPCTSEEDAGTGYLHSEEFPT 749
Query: 534 PDGKARLIAVEQIMPWEQPNG---EYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVV 590
P G+A ++P Q G EYPL+L T R + Y+T MT R L +
Sbjct: 750 PTGRASF-----LLPDYQFRGVPEEYPLVLVTGRNLYQYHTRSMTARVEELESFSDHEEL 804
Query: 591 YISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILT-ND 645
++ +DA GI++GD V+V + RGS+ ++A ++ +V EGV+ + FHF AN+LT D
Sbjct: 805 LMNPADASSMGIREGDTVEVTSERGSLRVRAGVTDEVMEGVVFMTFHFADAPANVLTGGD 864
Query: 646 ALNKAGTPELKYSSARIRKI 665
+G P LK++ R+ ++
Sbjct: 865 RDPFSGMPGLKFTPVRVCRV 884
>gb|AAC43173.1| (U00006) formate dehydrogenase-H alpha subunit [Escherichia coli]
Length = 715
Score = 489 bits (1246), Expect = e-137
Identities = 269/683 (39%), Positives = 410/683 (59%), Gaps = 29/683 (4%)
Query: 11 VCPYCGFGC--NLLIDP-KTLKVKPYKGEPNRGKLCPKGLHALEFV----LSKDRLRYPL 63
VCPYC GC NL++D K ++ + +G+ N+G LC KG + +F+ + RL+ P+
Sbjct: 7 VCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPM 66
Query: 64 --KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLLQKIAR- 119
++ G + WD+A+ +A +L IKE+YGP+AI SS+ NE NY++QK AR
Sbjct: 67 IRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARA 126
Query: 120 LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
++GTNN+D CAR+CH SV L ++G G +N ++++N + ++GYNPA++HP+V +
Sbjct: 127 VIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVAN 186
Query: 180 YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+++NAKR GAKIIV D R+ T R+AD + + G++I L NA+ +VII E LYDK FV
Sbjct: 187 HVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVA 246
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
SRT GF E + V+ YTPE E +TG+ A IR+ AR +A+A S AI+WGMG+TQ GV
Sbjct: 247 SRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGV 306
Query: 300 ENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRV 358
E V ++ +A+L G +G G+ P+RGQNNVQGA MGAL + PGY + D R++
Sbjct: 307 ETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKF 366
Query: 359 ASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLV 418
A WGVE +P G ++EL GEV+A YIMGE+P ++A + VRKA + LEL++
Sbjct: 367 AKAWGVESLPAHTGYXISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVI 426
Query: 419 VQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG 478
VQD+F+T+TA A ILP+ ++ E EG + ++R Q FK +P + K DW+I+S +
Sbjct: 427 VQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIA 486
Query: 479 KELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYK----------RLHT 528
+ P Y ++I +E + P+ G + E++ I P + L
Sbjct: 487 TRMGYP-MHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFK 545
Query: 529 IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEP 588
+F TP+G A+ + + P ++ EYP++L+TVR + HY+ MT +L L EP
Sbjct: 546 EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEP 605
Query: 589 -VVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILT 643
I+ DAK+ GI+D LV V +R+G I+ +A++S + +G I + + + N L
Sbjct: 606 GYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELV 665
Query: 644 NDALNK-AGTPELKYSSARIRKI 665
+ L+ TPE KY + R+ I
Sbjct: 666 TENLSPITKTPEYKYCAVRVEPI 688
>sp|P07658|FDHF_ECOLI FORMATE DEHYDROGENASE H (FORMATE-HYDROGEN-LYASE-LINKED,
SELENOCYSTEINE-CONTAINING POLYPEPTIDE) (FORMATE
DEHYDROGENASE-H ALPHA SUBUNIT) (FDH-H)
>gi|65980|pir||DEECFS formate dehydrogenase (EC 1.2.1.2)
H (hydrogenase-linked) [validated] - Escherichia coli
Length = 715
Score = 489 bits (1245), Expect = e-137
Identities = 269/683 (39%), Positives = 410/683 (59%), Gaps = 29/683 (4%)
Query: 11 VCPYCGFGC--NLLIDP-KTLKVKPYKGEPNRGKLCPKGLHALEFV----LSKDRLRYPL 63
VCPYC GC NL++D K ++ + +G+ N+G LC KG + +F+ + RL+ P+
Sbjct: 7 VCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPM 66
Query: 64 --KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLLQKIAR- 119
++ G + WD+A+ +A +L IKE+YGP+AI SS+ NE NY++QK AR
Sbjct: 67 IRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARA 126
Query: 120 LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
++GTNN+D CAR+CH SV L ++G G +N ++++N + ++GYNPA++HP+V +
Sbjct: 127 VIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVAN 186
Query: 180 YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+++NAKR GAKIIV D R+ T R+AD + + G++I L NA+ +VII E LYDK FV
Sbjct: 187 HVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVA 246
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
SRT GF E + V+ YTPE E +TG+ A IR+ AR +A+A S AI+WGMG+TQ GV
Sbjct: 247 SRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGV 306
Query: 300 ENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRV 358
E V ++ +A+L G +G G+ P+RGQNNVQGA MGAL + PGY + D R++
Sbjct: 307 ETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKF 366
Query: 359 ASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLV 418
A WGVE +P G ++EL GEV+A YIMGE+P ++A + VRKA + LEL++
Sbjct: 367 AKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVI 426
Query: 419 VQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG 478
VQD+F+T+TA A ILP+ ++ E EG + ++R Q FK +P + K DW+I+S +
Sbjct: 427 VQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIA 486
Query: 479 KELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYK----------RLHT 528
+ P Y ++I +E + P+ G + E++ I P + L
Sbjct: 487 TRMGYP-MHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFK 545
Query: 529 IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEP 588
+F TP+G A+ + + P ++ EYP++L+TVR + HY+ MT +L L EP
Sbjct: 546 EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEP 605
Query: 589 -VVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILT 643
I+ DAK+ GI+D LV V +R+G I+ +A++S + +G I + + + N L
Sbjct: 606 GYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELV 665
Query: 644 NDALNK-AGTPELKYSSARIRKI 665
+ L+ TPE KY + R+ I
Sbjct: 666 TENLSPITKTPEYKYCAVRVEPI 688
>pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Coli
>gi|2392332|pdb|1FDI| Oxidized Form Of Formate
Dehydrogenase H From E. Coli Complexed With The
Inhibitor Nitrite >gi|2392039|pdb|1AA6| Reduced Form Of
Formate Dehydrogenase H From E. Coli
Length = 715
Score = 485 bits (1234), Expect = e-136
Identities = 268/683 (39%), Positives = 409/683 (59%), Gaps = 29/683 (4%)
Query: 11 VCPYCGFGC--NLLIDP-KTLKVKPYKGEPNRGKLCPKGLHALEFV----LSKDRLRYPL 63
VCPYC GC NL++D K ++ + +G+ N+G LC KG + +F+ + RL+ P+
Sbjct: 7 VCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPM 66
Query: 64 --KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLLQKIAR- 119
++ G + WD+A+ +A +L IKE+YGP+AI SS+ NE NY++QK AR
Sbjct: 67 IRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARA 126
Query: 120 LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
++GTNN+D CAR+ H SV L ++G G +N ++++N + ++GYNPA++HP+V +
Sbjct: 127 VIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVAN 186
Query: 180 YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+++NAKR GAKIIV D R+ T R+AD + + G++I L NA+ +VII E LYDK FV
Sbjct: 187 HVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVA 246
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
SRT GF E + V+ YTPE E +TG+ A IR+ AR +A+A S AI+WGMG+TQ GV
Sbjct: 247 SRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGV 306
Query: 300 ENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRV 358
E V ++ +A+L G +G G+ P+RGQNNVQGA MGAL + PGY + D R++
Sbjct: 307 ETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKF 366
Query: 359 ASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLV 418
A WGVE +P G ++EL GEV+A YIMGE+P ++A + VRKA + LEL++
Sbjct: 367 AKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVI 426
Query: 419 VQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG 478
VQD+F+T+TA A ILP+ ++ E EG + ++R Q FK +P + K DW+I+S +
Sbjct: 427 VQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIA 486
Query: 479 KELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYK----------RLHT 528
+ P Y ++I +E + P+ G + E++ I P + L
Sbjct: 487 TRMGYP-MHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFK 545
Query: 529 IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEP 588
+F TP+G A+ + + P ++ EYP++L+TVR + HY+ MT +L L EP
Sbjct: 546 EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEP 605
Query: 589 -VVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILT 643
I+ DAK+ GI+D LV V +R+G I+ +A++S + +G I + + + N L
Sbjct: 606 GYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELV 665
Query: 644 NDALNK-AGTPELKYSSARIRKI 665
+ L+ TPE KY + R+ I
Sbjct: 666 TENLSPITKTPEYKYCAVRVEPI 688
>gb|AAA23754.1| (M13563) formate dehydrogenase [Escherichia coli]
Length = 715
Score = 483 bits (1231), Expect = e-135
Identities = 267/683 (39%), Positives = 409/683 (59%), Gaps = 29/683 (4%)
Query: 11 VCPYCGFGC--NLLIDP-KTLKVKPYKGEPNRGKLCPKGLHALEFV----LSKDRLRYPL 63
VCPYC GC N+++D K ++ + +G+ N+G LC KG + +F+ + RL+ P+
Sbjct: 7 VCPYCASGCKINVVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPM 66
Query: 64 --KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLLQKIAR- 119
++ G + WD+A+ +A +L IKE+YGP+AI SS+ NE NY++QK AR
Sbjct: 67 IRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARA 126
Query: 120 LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
++GTNN+D CAR+ H SV L ++G G +N ++++N + ++GYNPA++HP+V +
Sbjct: 127 VIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVAN 186
Query: 180 YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+++NAKR GAKIIV D R+ T R+AD + + G++I L NA+ +VII E LYDK FV
Sbjct: 187 HVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVA 246
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
SRT GF E + V+ YTPE E +TG+ A IR+ AR +A+A S AI+WGMG+TQ GV
Sbjct: 247 SRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGV 306
Query: 300 ENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRV 358
E V ++ +A+L G +G G+ P+RGQNNVQGA MGAL + PGY + D R++
Sbjct: 307 ETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKF 366
Query: 359 ASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLV 418
A WGVE +P G ++EL GEV+A YIMGE+P ++A + VRKA + LEL++
Sbjct: 367 AKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVI 426
Query: 419 VQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG 478
VQD+F+T+TA A ILP+ ++ E EG + ++R Q FK +P + K DW+I+S +
Sbjct: 427 VQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIA 486
Query: 479 KELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYK----------RLHT 528
+ P Y ++I +E + P+ G + E++ I P + L
Sbjct: 487 TRMGYP-MHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFK 545
Query: 529 IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEP 588
+F TP+G A+ + + P ++ EYP++L+TVR + HY+ MT +L L EP
Sbjct: 546 EKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEP 605
Query: 589 -VVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILT 643
I+ DAK+ GI+D LV V +R+G I+ +A++S + +G I + + + N L
Sbjct: 606 GYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELV 665
Query: 644 NDALNK-AGTPELKYSSARIRKI 665
+ L+ TPE KY + R+ I
Sbjct: 666 TENLSPITKTPEYKYCAVRVEPI 688
>gb|AAD13462.1| (AE000481) selenopolypeptide subunit of formate dehydrogenase H
[Escherichia coli K12]
Length = 715
Score = 476 bits (1212), Expect = e-133
Identities = 268/684 (39%), Positives = 409/684 (59%), Gaps = 31/684 (4%)
Query: 11 VCPYCGFGC--NLLIDP-KTLKVKPYKGEPNRGKLCPKGLHALEFV----LSKDRLRYPL 63
VCPYC GC NL++D K ++ + +G+ N+G LC KG + +F+ + RL+ P+
Sbjct: 7 VCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPM 66
Query: 64 --KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLLQKIAR- 119
++ G + WD+A+ +A +L IKE+YGP+AI SS+ NE NY++QK AR
Sbjct: 67 IRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARA 126
Query: 120 LLGTNNIDNCARLC-HEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
++GTNN+D CAR+ H SV L ++G G +N ++++N + ++GYNPA++HP+V
Sbjct: 127 VIGTNNVDCCARV-UHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVA 185
Query: 179 DYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFV 238
++++NAKR GAKIIV D R+ T R+AD + + G++I L NA+ +VII E LYDK FV
Sbjct: 186 NHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFV 245
Query: 239 RSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSG 298
SRT GF E + V+ YTPE E +TG+ A IR+ AR +A+A S AI+WGMG+TQ G
Sbjct: 246 ASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQG 305
Query: 299 VENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKR 357
VE V ++ +A+L G +G G+ P+RGQNNVQGA MGAL + PGY + D R++
Sbjct: 306 VETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREK 365
Query: 358 VASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELL 417
A WGVE +P G ++EL GEV+A YIMGE+P ++A + VRKA + LEL+
Sbjct: 366 FAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELV 425
Query: 418 VVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLL 477
+VQD+F+T+TA A ILP+ ++ E EG + ++R Q FK +P + K DW+I+S +
Sbjct: 426 IVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEI 485
Query: 478 GKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYK----------RLH 527
+ P Y ++I +E + P+ G + E++ I P + L
Sbjct: 486 ATRMGYP-MHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLF 544
Query: 528 TIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSE 587
+F TP+G A+ + + P ++ EYP++L+TVR + HY+ MT +L L E
Sbjct: 545 KEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADE 604
Query: 588 P-VVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANIL 642
P I+ DAK+ GI+D LV V +R+G I+ +A++S + +G I + + + N L
Sbjct: 605 PGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNEL 664
Query: 643 TNDALNK-AGTPELKYSSARIRKI 665
+ L+ TPE KY + R+ I
Sbjct: 665 VTENLSPITKTPEYKYCAVRVEPI 688
>gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus
solfataricus]
Length = 979
Score = 458 bits (1165), Expect = e-127
Identities = 267/679 (39%), Positives = 388/679 (56%), Gaps = 25/679 (3%)
Query: 9 RVVCPYCGFGCNLLI---DPKTLKVKPYKGEPNRGKL-CPKGLHALEFVLSKDRLRYPLK 64
+ VC YCG GC+ I K LK++P P G L C KG +FV S +R+ PL
Sbjct: 261 KTVCIYCGVGCSFEIWTKGRKILKIEPKPESPANGILTCVKGKFGWDFVNSSERITKPLI 320
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
+ G F WD+AI IA +L+EIKERYGP++I FIAS K+SNEE YLLQK+AR ++GT
Sbjct: 321 REGDKFREASWDEAISYIAKRLKEIKERYGPDSIGFIASDKMSNEEAYLLQKLARAIIGT 380
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NN+DN AR C + L T+G G + D+EN I+I G+N E+HPV+ +
Sbjct: 381 NNVDNSARYCQSPATVGLWRTVGIGADSGTIRDIENANLIVIVGHNTTESHPVIGSKVKR 440
Query: 184 AKR-KGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
AK+ G+KI+VIDVR+ AD + PGTD + + +I +G DKEF+ R
Sbjct: 441 AKKINGSKIVVIDVRKHEIAEKADLFIKPKPGTDAAVLAGVAKYLIDQGWIDKEFIDKRV 500
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
GF E K ++K +T +Y E +TG+ I ++A A S A++WGMG+TQH+ G +
Sbjct: 501 NGFEEFKESIKGFTLDYVEDITGVPRDQIIKLAEMIHNANSVAVLWGMGVTQHLGGADTS 560
Query: 303 IAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
+ D+ L+ G G G G +PMRG NNVQG + G L +LPGY L D +
Sbjct: 561 TIISDLLLITGNYGKPGSGAFPMRGHNNVQGVSDFGCLPNYLPGYQKLEDENVIAKFEEA 620
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
WGV+ + GL + ++ + +LEG++ ALYI+GE+ + + R+AL+K++ LVVQD
Sbjct: 621 WGVK-LNRNPGLQIPQMIEGVLEGKIHALYIVGEDTVMVDCGTPLTRQALEKVDFLVVQD 679
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+F+T TA+ A ILPAAA EK+G+++N+ERRIQ +K +P G++KPDWEI+ ++ L
Sbjct: 680 MFITETAKLADVILPAAASLEKDGTFVNTERRIQRFYKAMEPIGDSKPDWEIIQMVANAL 739
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKR-------LHTIRFQTP 534
+ Y +I E K+ P AG++ L+ N ++ P L+T F T
Sbjct: 740 G-ANWSYNHPAEIMNEIAKLGPIFAGVNYSRLEGFNSLLWPVNEDGSDTPLLYTNAFATK 798
Query: 535 DGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISE 594
DGKA L + P E + + + + T RV+ H++ G MT R L + + E V +S+
Sbjct: 799 DGKAILYPLSW-KPPELKDEVHKVTVNTGRVLEHFHVGNMTRRVEGLRRKVPETFVEVSK 857
Query: 595 SDAKKYGIKDGDLVKVETR-RGSIVLKAKISKVKEG-VIVVPFHFD-----ANILTNDAL 647
A KY IK+GDLV V+++ G I +A +S EG I +P + N LT +
Sbjct: 858 ELASKYSIKNGDLVLVKSKFGGEIKARAIVSDRVEGEEIFIPLYASDPSKGVNNLTGLVI 917
Query: 648 NKA-GTPELKYSSARIRKI 665
+KA GTP K + I KI
Sbjct: 918 DKASGTPGYKDTPVVIEKI 936
>gb|AAK41292.1| Formate dehydrogenase Alpha subunit (fdhF-1) [Sulfolobus
solfataricus]
Length = 657
Score = 440 bits (1119), Expect = e-122
Identities = 271/674 (40%), Positives = 395/674 (58%), Gaps = 35/674 (5%)
Query: 7 VIRVVCPYCGFGCNL---LIDPKTLKVKPYKGE-PNRGKLCPKGLHALEFVLSKDRLRYP 62
V + +CP+CG GC L + + +V P + +RG +C KG A E + + DRL YP
Sbjct: 3 VRKTICPFCGVGCGLDFYVENNFIFRVSPSQEHIVSRGHVCGKGAVASEVIYAWDRLTYP 62
Query: 63 LKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
LK+V FVR WD+AI +IASKL+EI+ +YG AIAF + + EE Y K+AR LG
Sbjct: 63 LKRVKDTFVRTTWDEAISDIASKLKEIRSKYGSEAIAFYGGCQNTLEEGYSFMKLARALG 122
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
TNN+D+CAR+CHE S ALK +G G + S++ N + I+I G + ++HPV+ Y++
Sbjct: 123 TNNVDSCARVCHEPSAMALKELVGIGASSVTVSEILNARNIVISGESVTDSHPVLSQYLV 182
Query: 183 NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
AKRKG KI+VID R T T R+AD L I+ GTDI L NA+ N +IS GLYD +FV+ R
Sbjct: 183 EAKRKGVKIVVIDPRMTGTARIADLFLQISSGTDIYLYNAVANYLISNGLYDSKFVKERV 242
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
F E + VK YT E AE++T + I E AR A + + WG+GLTQ SGV V
Sbjct: 243 ENFDEFREIVKSYTIEEAERITSVSKDKIIEFARIIANKPT-ILSWGLGLTQS-SGVNAV 300
Query: 303 IAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
A I++ALL G VG + GGL RGQ NVQG+ + F G P+ + K ++ +
Sbjct: 301 KAYINLALLTGNVGINGGGLLVYRGQTNVQGSGDLIKPDVFPNG--PMNEEN-AKELSKI 357
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
WG P ++GL +TE + + + VKAL++M NPA S N KV K L+ LELLVV D
Sbjct: 358 WGFVP-PIKKGLSITEAF--LRDSNVKALFLMNYNPAFSLPNRYKVIKFLKSLELLVVMD 414
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
F+T TA++AHY+LP + EKEGS N +R ++W FKV DPPGE + + I+ + ++L
Sbjct: 415 PFMTETAKYAHYVLPTPLWAEKEGSVTNLDRTVKWRFKVVDPPGEVRSELWIIKRIAEKL 474
Query: 482 DLPGF------PYEKVEDITEEYFKM-FPELAGISVEELKNSNGIIIPYKRLHTIRFQTP 534
L GF +++++++ + Y + EL SV+ + L+ RF TP
Sbjct: 475 GLTGFHDDPKLVFKEIKEVAKLYSNLTLDELMDYSVDSRYPDH-----ESSLYKDRFMTP 529
Query: 535 DGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISE 594
GKA+ ++ + + +G+ IL T RV++ YN+ E+ R P S+ + I+
Sbjct: 530 SGKAKF----GLVRYNEISGD-SYILITGRVVTRYNSDELIKRVPGYRNFSSD--LLINP 582
Query: 595 SDAKKYGIKDGDLVKVETRRGSIVLKAKI-SKVKEGVIVVPFH--FDANILTNDALNKAG 651
DA K IKDGD+VKV ++ G V+KAK+ ++VK G H + N++ +D + +
Sbjct: 583 EDATKLNIKDGDMVKVVSKCGMAVMKAKLTNEVKVGHTFAYMHDYYVNNVVCDDLDDISK 642
Query: 652 TPELKYSSARIRKI 665
TP K + +I K+
Sbjct: 643 TPRYKITFVKIEKL 656
>emb|CAC11567.1| (AL445064) formate dehydrogenase related protein [Thermoplasma
acidophilum]
Length = 996
Score = 434 bits (1105), Expect = e-120
Identities = 259/680 (38%), Positives = 387/680 (56%), Gaps = 23/680 (3%)
Query: 6 RVIRVVCPYCGFGCNL---LIDPKTLKVKPYKGEPNRG-KLCPKGLHALEFVLSKDRLRY 61
R + VC YCG GC+ + K LKV+P P G C KG +FV S DRL
Sbjct: 278 RKTKTVCTYCGVGCSFEMWTVGRKILKVQPKPESPANGISTCVKGKFGWDFVNSPDRLTE 337
Query: 62 PLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-L 120
PL + G F WD+A+ IAS+LREIKE+YGP+AI FIASSK +NEE YL+QK+AR +
Sbjct: 338 PLIRDGDRFRMASWDEALDLIASRLREIKEKYGPDAIEFIASSKGTNEEAYLVQKLARQV 397
Query: 121 LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY 180
GTNN+DN +R C + L T+G G SDL I+ G N AE+HPV+
Sbjct: 398 FGTNNVDNSSRFCQAPATTGLWRTVGYGGDAGSISDLYVSDLILAVGTNTAESHPVIATR 457
Query: 181 ILNA-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
I A K G KIIV D+R R AD + PGTD+ NA+ I+ +G +EF+
Sbjct: 458 IKRAHKLNGQKIIVADLRMHEMARRADVFIHPRPGTDLVWINAVAKYIVDQGWQAREFIE 517
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
R + E +++ +T E+AEKV+G+ A IR++A +A S A++W MG+TQH +G
Sbjct: 518 KRVNFYDEYVKSLEPFTLEFAEKVSGVSADDIRKIATMIHEAKSMAVIWAMGVTQHQAGS 577
Query: 300 ENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRV 358
+ A+ ++ LL G G G G YP+RG NNVQGA+ GA+S +LPGY ++D RK++
Sbjct: 578 DTSTALSNLLLLTGNYGRPGTGGYPLRGHNNVQGASDFGAMSAYLPGYQSVSDEKARKKI 637
Query: 359 ASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLV 418
W + IP + G +AI ++A+Y++GE + ++ +RK L+KL+ LV
Sbjct: 638 EEYWKCQ-IPDKPGYDNNTCLEAINSDRIRAMYVVGEELVETGSDSEYIRKQLEKLDFLV 696
Query: 419 VQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG 478
V+D+FL+ TA++A +LPAAA EKEG+++N+ERRIQ ++V +P G ++PDW+I+ +
Sbjct: 697 VEDMFLSETAKYADVVLPAAASVEKEGTFVNTERRIQRIYRVMEPLGNSRPDWQIIQDVA 756
Query: 479 KELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYK-------RLHTIRF 531
L G+ Y +I +E K+ P AG+S E L+ + P L+T RF
Sbjct: 757 NRLG-AGWNYRHPSEIMQEVSKIAPIFAGVSYERLEGFGSLQWPVSDGGKDTPLLYTDRF 815
Query: 532 QTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVY 591
PDGKAR ++ P + E+ L L R++ H++ G T RSP L + + V
Sbjct: 816 NFPDGKARFYPLKYSPPL-TVDQEFDLHLNNGRILEHFHEGNETYRSPGLKEKVPGTFVE 874
Query: 592 ISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFDANILTNDALNK- 649
+S A + G+KDGDLV++ ++ GSI ++ ++ +V + +P + + N+ ++
Sbjct: 875 VSPELAAERGLKDGDLVRITSKWGSIKVRVLVTDRVSGKELYMPMNSGGDSAVNNLTSRL 934
Query: 650 ----AGTPELKYSSARIRKI 665
A TP K ++ KI
Sbjct: 935 MDPTAHTPAYKELPVKMEKI 954
>pir||E69850 formate dehydrogenase homolog yjgC - Bacillus subtilis
>gi|2612888|gb|AAC46312.1| (AF015825) formate
dehydrogenase alpha subunit homolog [Bacillus subtilis]
>gi|2633570|emb|CAB13073.1| (Z99110) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 985
Score = 432 bits (1098), Expect = e-120
Identities = 252/677 (37%), Positives = 390/677 (57%), Gaps = 29/677 (4%)
Query: 9 RVVCPYCGFGCNLLIDPK---TLKVKPYKGEPNRG-KLCPKGLHALEFVLSKDRLRYPLK 64
+ VC YCG GC+ + K LKV+P + P G C KG +FV S++RL PL
Sbjct: 262 KTVCTYCGVGCSFDVWTKGRDILKVEPQEEAPANGISTCVKGKFGWDFVNSEERLTKPLI 321
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
+ G F W++A+ IASK E+KE +GP+++AFI SSK +NEE+YL+QK+AR ++GT
Sbjct: 322 REGDHFREAEWEEALLLIASKFTELKEAFGPDSLAFITSSKCTNEESYLMQKLARGVIGT 381
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NN+DNC+R C + L T+G G + +D+ ++I G N +E+HPV+ I
Sbjct: 382 NNVDNCSRYCQSPATAGLFRTVGYGGDSGSITDIAQADLVLIIGSNTSESHPVLSTRIKR 441
Query: 184 A-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
A K +G K+IV D+R+ +D + G+DI NA+ +I G D+ F+R R
Sbjct: 442 AHKLRGQKVIVADIRKHEMAERSDLFVQPRAGSDIVWLNAIAKYLIENGKADERFLRERV 501
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
G E ++ YT EYAE+ TGI+ + + ++A +A S +W MG+TQH+ G +
Sbjct: 502 NGRDEYVKSLAPYTLEYAEEKTGIDQETLIQMAEMIGQADSVCALWAMGVTQHIGGSDTS 561
Query: 303 IAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
A+ ++ L+ G G G G YP+RG NNVQGA+ G++ + LPGY +TD R++ +
Sbjct: 562 TAISNLLLVTGNYGKPGAGSYPLRGHNNVQGASDFGSMPDRLPGYEKVTDEQVRQKYERV 621
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
WGV +P E G+ E+ + I G++KA+Y+ GE + ++N+ V A +KL+ VVQD
Sbjct: 622 WGVP-LPKEPGMTNHEMIEKIHSGQLKAMYVKGEEMGLVDSNINHVHAAYEKLDFFVVQD 680
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+FL+RTA FA +LPA+ EKEG++ N+ERRIQ ++V +P GE+KPDW+I+ + +L
Sbjct: 681 IFLSRTAEFADVVLPASPSLEKEGTFTNTERRIQRLYQVFEPLGESKPDWQIIMEVANKL 740
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKR-------LHTIRFQTP 534
G+ YE DI EE K+ P AG++ E L+ N + P L T RF P
Sbjct: 741 G-AGWLYEHPADIMEEAAKLSPIYAGVTYERLEGYNSLQWPVNADGKDSPLLFTERFPFP 799
Query: 535 DGKARLIAVEQIMPWEQP---NGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVY 591
DGKA L V+ W +P EY + + R++ H++ G +T +S + + E +
Sbjct: 800 DGKAILYPVQ----WTEPKEFGEEYDIHVNNGRLLEHFHEGNLTYKSKGISEKTPEVFLE 855
Query: 592 ISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFDA----NILTNDA 646
IS A + GI+DG LV++ + G++ +K I+ +VK + +P + N+LT
Sbjct: 856 ISPELAAERGIQDGTLVRLTSPFGNVKVKCLITDRVKGKEVYLPMNDSGEAAINLLTGSH 915
Query: 647 LNK-AGTPELKYSSARI 662
+K TP K +SA++
Sbjct: 916 ADKDTDTPAYKETSAKM 932
>gb|AAB94932.1| (AF039208) putative formate dehydrogenase alpha subunit
[Thermococcus litoralis]
Length = 637
Score = 427 bits (1085), Expect = e-118
Identities = 261/667 (39%), Positives = 375/667 (56%), Gaps = 45/667 (6%)
Query: 10 VVCPYCGFGCNLLID-----PKTLKVKPYKGEPN-RGKLCPKGLHALEFVLSKDRLRYPL 63
+ CPYCG GC + P ++ PN RGKLCPKG E++LSK+RL+ PL
Sbjct: 4 ITCPYCGAGCRAYVKKELSHPFIIEYVTDINVPNDRGKLCPKGNAMFEYLLSKERLKTPL 63
Query: 64 KKVG-SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
K + FV+I W +AI EIAS +R + PN + FIA KVSNE YL QK+AR +G
Sbjct: 64 KAIERGKFVKISWKEAINEIASFIRGYMKD-DPNRLMFIAGGKVSNESAYLFQKLARNIG 122
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTN--PYSDLENFKAIMIWGYNPAETHPVVMDY 180
TNN+DN + LCH SV A+ L A + N Y D+E I++WG N AET P++
Sbjct: 123 TNNVDNTSHLCHGVSVRAI---LDANFERNWATYDDIEESNVIILWGANLAETAPLIFRR 179
Query: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
+L AK + AKIIVID R+T T + A + PGTDI L NAL+N+++ + ++S
Sbjct: 180 VLKAKNRSAKIIVIDPRKTKTTKFASIHVRPFPGTDIVLINALINLLLK-----RRNIKS 234
Query: 241 RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
S++++ + K TPEYAE++TG+ + I E+ARE A G I+WG G+ H +G +
Sbjct: 235 AHFKASDLEI-ISKNTPEYAERITGVPVRDIEEIAREIGLARRGIILWGSGIAMHSNGYD 293
Query: 301 NVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS 360
+ ++I +A ++ + + P+ GQNN QG MG + FLPGY D+ + R A
Sbjct: 294 VIRSIITLASIVDFK-----VLPLAGQNNSQGVMDMGVVPNFLPGYRTY-DNVYIFREA- 346
Query: 361 LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
W E++PTE GL + + + V A Y+MG N A+S + KAL++ E ++VQ
Sbjct: 347 -WKNEELPTEVGLDIPKSIKEAQKRNVSAFYVMGANIALSFP---EAEKALRRAEFVIVQ 402
Query: 421 DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
D+F T+T A +LPAAAF E GS N+ERRIQWS +V PPG+AKPDW IL LG
Sbjct: 403 DIFPTQTTELADIVLPAAAFLESNGSTTNAERRIQWSSRVKWPPGDAKPDWAILCELGNA 462
Query: 481 LDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARL 540
L L GF + E+I E + P+ A + L + P + I PD +
Sbjct: 463 LGLRGFDFYFPEEILREISTLVPQYANANPRTLMRT-----PEGVMWNI---VPDSQPTK 514
Query: 541 IAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKY 600
+ V MP +P ++ TVR + + TG MT RSP L + ++ +SE DA+K+
Sbjct: 515 VYVSNKMPLLEPP-----VMITVRYVGQFQTGTMTKRSPPLNIRWQDLLILVSEEDAQKW 569
Query: 601 GIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHFDANILTNDALN-KAGTPELKYS 658
GIKDGD VK+ + G + K+SK V G I P+H N + ++ K G P+LK
Sbjct: 570 GIKDGDRVKLVSENGKYIGTVKVSKTVIPGTIKAPWHEGVNRIMGLKIDEKTGLPQLKAC 629
Query: 659 SARIRKI 665
S ++ ++
Sbjct: 630 SCKLERV 636
>pir||H64468 formate dehydrogenase (EC 1.2.1.2) alpha chain - Methanococcus
jannaschii
Length = 535
Score = 415 bits (1056), Expect = e-115
Identities = 239/535 (44%), Positives = 338/535 (62%), Gaps = 20/535 (3%)
Query: 146 GAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLA 205
G+G TN D+E I+I G N E HP++ I+ AK KGAKIIVID R T T + +
Sbjct: 6 GSGAMTNSIEDIELADCILIIGSNTFEQHPLIARRIMRAKDKGAKIIVIDPRRTITAKNS 65
Query: 206 DYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTG 265
D L I PGT++ L NA++NVII E L DKEF+++RT GF ++K +KKYTPEYA K+ G
Sbjct: 66 DIYLQIIPGTNVALINAMINVIIKENLIDKEFIKNRTEGFEKLKEIIKKYTPEYASKICG 125
Query: 266 IEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPM 324
++ +LI E A+ + A +I++ MG+TQ GV+ V A+ ++A++ G +G +G G+ P+
Sbjct: 126 VDKELIIESAKIYGNAERASIIYCMGVTQFTHGVDAVKALCNLAMITGNIGKEGTGVNPL 185
Query: 325 RGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILE 384
RGQNNVQGA MGAL PGY + D K W D+ GL + E+ D +
Sbjct: 186 RGQNNVQGACDMGALPNVFPGYQKVEDG--YKLFEEYWKT-DLNPNSGLTIPEMIDESGK 242
Query: 385 GEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE 444
+K LYIMGENP VS+ +V V KAL+ L+ LVVQD+FLT TA+ A +LPAA + EK+
Sbjct: 243 -NIKFLYIMGENPIVSDPDVKHVEKALKSLDFLVVQDIFLTETAKLADVVLPAACWAEKD 301
Query: 445 GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDL-PGFPYEKVEDITEEYFKMFP 503
G++ N+ERR+Q K +PPGEA DW I+ L ++L F Y KVEDI E K+ P
Sbjct: 302 GTFTNTERRVQLIRKAVNPPGEALEDWIIIKKLAEKLGYGDKFNYNKVEDIFNEIRKVTP 361
Query: 504 ELAGISVEELKNSNGIIIP--------YKRLHTIRFQTPDGKARLIAVEQIMPWEQPNGE 555
+ GI+ + LK +GI P K LH +F T +G+ ++ VE E P+ +
Sbjct: 362 QYRGITYKRLK-IDGIHWPCLDENHSGTKILHKDKFLTDNGRGKIFPVEYREVAELPDKD 420
Query: 556 YPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRG 615
YP ILTT R++ HY+TG MT R +LV+ ++EP + I+ DAK I++GDLVKV +RRG
Sbjct: 421 YPFILTTGRIIFHYHTGTMTRRCKNLVEEINEPFIEINPDDAKSLKIENGDLVKVISRRG 480
Query: 616 SIVLKAKISK-VKEGVIVVPFHF---DANILTNDALNK-AGTPELKYSSARIRKI 665
I KA+I++ +K+GV+ +PFHF + N+LTN AL++ PELK + +I +I
Sbjct: 481 EITAKARITEDIKKGVVFMPFHFVEANPNVLTNTALDELCKIPELKVCAVKIERI 535
>gb|AAG37855.1|AF298190_5 (AF298190) NAD-dependent formate dehydrogenase alpha subunit
[Sinorhizobium meliloti]
Length = 959
Score = 392 bits (996), Expect = e-108
Identities = 236/681 (34%), Positives = 372/681 (53%), Gaps = 37/681 (5%)
Query: 12 CPYCGFGCNLLIDPK---TLKVKPYK-GEPNRGKLCPKGLHALEFVLSKDRLRYPL--KK 65
C YCG GC+ + + +++ P+K G+ NRG C KG A + +DR+ P+ +K
Sbjct: 255 CAYCGVGCSFKAEMRGEELVRMVPWKDGQANRGHSCVKGRFAYGYSNHRDRILNPMVREK 314
Query: 66 VGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGTN 124
V + + W++A +AS+ R I+ +YG +++ I SS+ +NEE +L+QK+ R G N
Sbjct: 315 VTDPWREVTWEEAFAHVASEFRRIQYQYGRDSVGGITSSRCTNEETFLVQKLVRAGFGNN 374
Query: 125 NIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNA 184
N+D CAR+CH + + L T G T + +E+ +I G NP + HPV +
Sbjct: 375 NVDTCARVCHSPTGYGLNQTFGTSAGTQDFDSVEHTDVAVIIGANPTDGHPVFASRLKKR 434
Query: 185 KRKGAKIIVIDVRETTTMRLA----DYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
R+GAK+IVID R +R A Y L + PGT++ + A+ +VI++EGL ++ F+R
Sbjct: 435 LRQGAKLIVIDPRRIDLVRSAHVEASYHLPLKPGTNVAILTAIAHVIVTEGLANEAFIRE 494
Query: 241 RTVGFSEVK-----MAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQH 295
R +SE + +A ++PE E TG+ +L+R AR +A G+GAI +G+G+T+H
Sbjct: 495 RC-DWSEFEDWAAFVAEPHHSPEATEAYTGVPPELVRGAARLYATGGNGAIYYGLGVTEH 553
Query: 296 VSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTF 354
G V+A+ ++A+L G +G G G+ P+RGQNNVQG+ MG+ LPGY ++D
Sbjct: 554 SQGSTTVMAIANLAMLTGNIGRPGVGVNPLRGQNNVQGSCDMGSFPHELPGYRHISDDAT 613
Query: 355 RKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKL 414
R+ LWGV + E GL + + DA +EG K LY+ GE+ S+ + V L +
Sbjct: 614 REIFEKLWGVT-LNHEPGLRIPNMLDAAVEGTFKGLYVQGEDILQSDPDTKHVAAGLAAM 672
Query: 415 ELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEIL 474
E +VV DLFL TA +AH LP + F EK+G++ N+ERRI +V P DWE+
Sbjct: 673 ECVVVHDLFLNETANYAHVFLPGSTFLEKDGTFTNAERRINRVRRVMRPK-NGYADWEVT 731
Query: 475 SLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKR--------L 526
+ + + L + Y DI +E P A +S + L + P +
Sbjct: 732 QKMAQAMGL-AWNYRHPSDIMDEIAATTPSFAMVSYDYLDKMGSVQWPCNEKAPLGSPIM 790
Query: 527 HTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMS 586
H F GK + I E + E+ +PL+LTT R++S YN G T R+ ++V +
Sbjct: 791 HVDGFVR--GKGKFIRTEYVATDERTGPRFPLLLTTGRILSQYNVGAQTRRTENVV-WHA 847
Query: 587 EPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANIL 642
E + I DA++ GI+DGD V++ +R G L+A I+ +V GV+ FH AN++
Sbjct: 848 EDRLEIHPHDAEQRGIRDGDWVRLASRSGDTTLRALITDRVAPGVVYTTFHHPSTQANVI 907
Query: 643 TNDALNKA-GTPELKYSSARI 662
T D + A PE K ++ ++
Sbjct: 908 TTDFTDWATNCPEYKVTAVQV 928
>emb|CAA11235.1| (AJ223295) NAD-dependent formate dehydrogenase alpha subunit
[Ralstonia eutropha]
Length = 959
Score = 389 bits (988), Expect = e-107
Identities = 242/678 (35%), Positives = 370/678 (53%), Gaps = 31/678 (4%)
Query: 12 CPYCGFGCNLLIDPKTLKVK---PYK-GEPNRGKLCPKGLHALEFVLSKDRLRYPL--KK 65
C YCG GC+ + K KV PYK G+ N G C KG A + KDR+ P+ K
Sbjct: 250 CAYCGVGCSFKAEMKGNKVVRMVPYKDGKANEGHACVKGRFAWGYATHKDRILKPMIRAK 309
Query: 66 VGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGTN 124
+ + + W++AI AS+ + I+ +G ++I I SS+ +NEE YL+QK+ R G N
Sbjct: 310 ITDPWREVSWEEAIDYAASQFKRIQAEHGKDSIGGIVSSRCTNEEGYLVQKLVRARFGNN 369
Query: 125 NIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNA 184
N+D CAR+CH + + LK TLG T + +E IM+ G NP + PV +
Sbjct: 370 NVDTCARVCHSPTGYGLKQTLGESAGTQTFKSVEKADVIMVIGANPTDGDPVFASRMKKG 429
Query: 185 KRKGAKIIVIDVRETTTMRL----ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
R GA++IV+D R + ADY L + PGT++ L +L +VI++EGL ++ F+
Sbjct: 430 LRAGARLIVVDPRRIDLVDSPHIRADYHLQLRPGTNVALVTSLAHVIVTEGLLNEAFIAE 489
Query: 241 RTV--GFSEVK--MAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHV 296
R F + + +++ + +PE E VTGI A+ A + I +G+G+T+H
Sbjct: 490 RCEDRAFQQWRDFVSLPENSPEAMESVTGIPAEHCAVPHACMPPAATLRIYYGLGVTEHA 549
Query: 297 SGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFR 355
G V+ + ++A+ G +G +G G+ P+RGQNNVQG+ +G+ LPGY ++DST R
Sbjct: 550 QGSTTVMGIANLAMATGNIGREGVGVNPLRGQNNVQGSCDIGSFPHELPGYRHVSDSTTR 609
Query: 356 KRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLE 415
+ W VE P E GL + +++A L G K LY GE+ S+ N V +AL +E
Sbjct: 610 GLFEAAWNVEISP-EPGLRIPNMFEAALAGSFKGLYFQGEDIVQSDPNTQHVSEALSSME 668
Query: 416 LLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILS 475
+VVQD+FL TA++AH LP ++F EK+G++ N+ERRI KV PP DWE
Sbjct: 669 CIVVQDIFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKVM-PPKARYADWEATI 727
Query: 476 LLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPY-----KRLHTIR 530
LL L P Y+ +I +E ++ P AG+S + L I P + T+
Sbjct: 728 LLANALGYP-MDYKHPSEIMDEIARLTPTFAGVSYKRLDKLGSIQWPCNADAPEGTPTMH 786
Query: 531 FQT-PDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPV 589
T GK + I + + E+ +PLILTT R++S YN G T R+ + V +E
Sbjct: 787 IDTFVRGKGKFIITKYVPTTEKITRAFPLILTTGRILSQYNVGGQTRRTDN-VYWHAEDR 845
Query: 590 VYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHF---DANILTND 645
+ I DA++ GIKDGD V V++R G VL+A ++ +++ GV+ FHF AN++T D
Sbjct: 846 LEIHPHDAEERGIKDGDWVGVQSRAGDTVLRAIVNERMQPGVVYTTFHFPESGANVITTD 905
Query: 646 ALNKA-GTPELKYSSARI 662
+ A PE K ++ ++
Sbjct: 906 NSDWATNCPEYKVTAVQV 923
>sp|P42434|NASC_BACSU ASSIMILATORY NITRATE REDUCTASE CATALYTIC SUBUNIT
>gi|7431437|pir||E69665 nitrate reductase (EC 1.7.99.4)
nasC - Bacillus subtilis >gi|1805403|dbj|BAA08965.1|
(D50453) catalytic subunit of nitrate reductase
[Bacillus subtilis] >gi|2632617|emb|CAB12125.1| (Z99105)
assimilatory nitrate reductase (catalytic subunit)
[Bacillus subtilis]
Length = 710
Score = 386 bits (982), Expect = e-106
Identities = 243/678 (35%), Positives = 359/678 (52%), Gaps = 28/678 (4%)
Query: 12 CPYCGFGCNL-LIDPKTLKVKPYKG-----EPNRGKLCPKGLHALEFVLSKDRLRYPLKK 65
CP+C C + L++ + K Y +G+LC KG++A + L+ R+ PL K
Sbjct: 26 CPFCSMQCKMQLVEQTIVTRKKYTAIGIDNPTTQGRLCIKGMNAHQHALNSSRITRPLLK 85
Query: 66 VGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGTN 124
+F+ + W++A+ I ++ I+ +G +A+A S+ ++NEE YLL K AR+ L T
Sbjct: 86 KNGEFMPVSWEEALNHIKDQVTMIQTEHGHDAMAVYGSASITNEEAYLLGKFARVGLQTK 145
Query: 125 NIDNCARLCHEASVHALKMTLGAGVQ-TNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
ID RLC A+ A T GA TNP SD+ + + I++ G N AE P +M Y
Sbjct: 146 YIDYNGRLCMSAAATAANQTFGADRGLTNPLSDIPHTRVIILAGTNIAECQPTIMPYFEK 205
Query: 184 AKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTV 243
AK GA I ID RET T ++AD L I PGTD LAN L+ +II E L +++F++SRT
Sbjct: 206 AKENGAYFIAIDPRETATTKIADLHLKIKPGTDAALANGLVKIIIDEQLINEDFIQSRTN 265
Query: 244 GFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVI 303
GF E+K + T + IR+ A +FAK SG + G+ Q G V
Sbjct: 266 GFEELKQHTDSLDLNDIAEQTSVSLVDIRKAAVKFAKETSGMLFTARGIEQQTDGTAAVK 325
Query: 304 AVIDMALLLGYVGDK-GGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLW 362
++M L+ G +G G + GQ N QGA G ++ LPGY + + R +A +W
Sbjct: 326 GFLNMVLITGKIGKPYSGYGAITGQGNGQGAREHGQKADQLPGYRSIENEEHRAHIAKVW 385
Query: 363 GV--EDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
G+ +D+P +G+ E+ + I +G++K L++M NPAVS N V+KAL++L V
Sbjct: 386 GIHQDDLP-RKGVSAYEVMEKINDGDIKGLFLMCSNPAVSSPNANLVKKALRRLTFFVAI 444
Query: 421 DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
DLF++ TA++A ILPA+++ E EG+ N E R+ PGEAK DW+I+ L
Sbjct: 445 DLFISETAKYADVILPASSYLEDEGTMTNVEGRVTLREASRPCPGEAKHDWQIICDLASA 504
Query: 481 LDLPG-FPYEKVEDITEEYFKM----FPELAGISVEELKNSNGIIIPYK--------RLH 527
L F Y EDI E + + +GIS L+ GI P RL
Sbjct: 505 LGKGRYFSYTSAEDIFNELREASRGGIADYSGISYGRLRREGGIHWPCPESDHPGTGRLF 564
Query: 528 TIRFQTPDGKARLIAV--EQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLM 585
T F PD KA L + E +P E+P +YPL LTT RVMSHY TG T +S +L
Sbjct: 565 TESFAHPDQKAALSVIPNEPPVPKEKPTADYPLYLTTGRVMSHYLTGVQTRKSAALAARH 624
Query: 586 SEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFDANILTN 644
E + I A Y I+D LVK+E+ RGSI +++K+S ++++ + VP H+ N
Sbjct: 625 FESFMEIHPQTAATYNIEDRVLVKIESPRGSITVRSKLSEQIRKDTVFVPIHWADAQNVN 684
Query: 645 DALNKAGTPELKYSSARI 662
D + +A P K ++
Sbjct: 685 DLIGEALDPACKMPGFKV 702
>pir||D69974 formate dehydrogenase homolog yrhE - Bacillus subtilis
>gi|2635168|emb|CAB14664.1| (Z99117) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 980
Score = 381 bits (968), Expect = e-104
Identities = 233/674 (34%), Positives = 360/674 (52%), Gaps = 23/674 (3%)
Query: 9 RVVCPYCGFGCNLLIDPK---TLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPLK 64
+ VC +CG GC+ + K LK++P P N C KG +FV SK+R+ PL
Sbjct: 267 KTVCTFCGVGCSFEVWTKGRDILKIQPVSDAPVNAISTCVKGKFGWDFVNSKERITKPLI 326
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
+ FV W++A+ +AS+L IKE+YG ++ FI+SSK++NEENY++QK+AR + T
Sbjct: 327 RKNGAFVESSWEEALDLVASRLGSIKEQYGKGSVGFISSSKITNEENYVIQKLARQVFET 386
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NN+DNC+R C + L T+G G D+ ++I G NPAE HPV+ +
Sbjct: 387 NNVDNCSRYCQSPATDGLFRTVGMGGDAGTIKDIAKAGLVIIVGANPAEGHPVLATRVKR 446
Query: 184 A-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
A K G K+IV D+R+ +D + GTD A+ +I +G +D+ F+
Sbjct: 447 AHKLHGQKLIVADLRKNEMAERSDLFISPKQGTDQVWLMAVTKYMIDQGWHDQAFIDENV 506
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
F + K +K YT +YAE++TG+ + I ++A A ++WGMG+TQ+ G +
Sbjct: 507 NYFEDYKETLKTYTLDYAERITGLSKENIIQIAEMIRDADGTCVLWGMGVTQNTGGSDTS 566
Query: 303 IAVIDMALLLG-YVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
A+ ++ L G Y G YP+RG NNVQGA MG L +LPGY +TD R +
Sbjct: 567 AAISNLLLATGNYRRPGAGAYPLRGHNNVQGACDMGTLPGWLPGYQHITDDKARAKFEEA 626
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
+GVE I + GL ++ AI EG++KA+Y++GE+ A+ ++N V L L+ VVQD
Sbjct: 627 YGVE-IDGKPGLDNIQMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDILSSLDFFVVQD 685
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+FL+RTA++A +LPA EK+G++ N+ERR+Q ++ G+AKPDW I+ + L
Sbjct: 686 IFLSRTAQYADVVLPATPSLEKDGTFTNTERRVQRLYQALPTLGDAKPDWWIIQEVANRL 745
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGII------IPYKRLHTIRFQTPD 535
+ Y DI E + P A S E L+ N + L+ F PD
Sbjct: 746 G-ANWNYSHPSDIFSEMASLSPLFAKASYEVLEGWNSFLWGSFTGESTPLLYEDGFNFPD 804
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISES 595
KAR + P P EY L + R++ H++ G MT +S + + V IS
Sbjct: 805 KKARFALSDWTEPAAFPE-EYDLHINNGRMLEHFHEGNMTNKSKGIQAKVPNVFVEISPE 863
Query: 596 DAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFD-----ANILTNDALNK 649
A++ G+ DG LV++ + G++ L A I+ +V++ + +P + N LT A +K
Sbjct: 864 LAQERGVCDGSLVRLVSPFGAVKLNALITDRVRKNELYLPMNSTDKESAINFLTGPAADK 923
Query: 650 -AGTPELKYSSARI 662
TP K + R+
Sbjct: 924 RTNTPAYKQTKVRM 937
>gb|AAB80862.1| (U93874) formate dehydrogenase chain A [Bacillus subtilis]
Length = 982
Score = 381 bits (968), Expect = e-104
Identities = 233/674 (34%), Positives = 360/674 (52%), Gaps = 23/674 (3%)
Query: 9 RVVCPYCGFGCNLLIDPK---TLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPLK 64
+ VC +CG GC+ + K LK++P P N C KG +FV SK+R+ PL
Sbjct: 269 KTVCTFCGVGCSFEVWTKGRDILKIQPVSDAPVNAISTCVKGKFGWDFVNSKERITKPLI 328
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
+ FV W++A+ +AS+L IKE+YG ++ FI+SSK++NEENY++QK+AR + T
Sbjct: 329 RKNGAFVESSWEEALDLVASRLGSIKEQYGKGSVGFISSSKITNEENYVIQKLARQVFET 388
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NN+DNC+R C + L T+G G D+ ++I G NPAE HPV+ +
Sbjct: 389 NNVDNCSRYCQSPATDGLFRTVGMGGDAGTIKDIAKAGLVIIVGANPAEGHPVLATRVKR 448
Query: 184 A-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
A K G K+IV D+R+ +D + GTD A+ +I +G +D+ F+
Sbjct: 449 AHKLHGQKLIVADLRKNEMAERSDLFISPKQGTDQVWLMAVTKYMIDQGWHDQAFIDENV 508
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
F + K +K YT +YAE++TG+ + I ++A A ++WGMG+TQ+ G +
Sbjct: 509 NYFEDYKETLKTYTLDYAERITGLSKENIIQIAEMIRDADGTCVLWGMGVTQNTGGSDTS 568
Query: 303 IAVIDMALLLG-YVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
A+ ++ L G Y G YP+RG NNVQGA MG L +LPGY +TD R +
Sbjct: 569 AAISNLLLATGNYRRPGAGAYPLRGHNNVQGACDMGTLPGWLPGYQHITDDKARAKFEEA 628
Query: 362 WGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
+GVE I + GL ++ AI EG++KA+Y++GE+ A+ ++N V L L+ VVQD
Sbjct: 629 YGVE-IDGKPGLDNIQMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDILSSLDFFVVQD 687
Query: 422 LFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
+FL+RTA++A +LPA EK+G++ N+ERR+Q ++ G+AKPDW I+ + L
Sbjct: 688 IFLSRTAQYADVVLPATPSLEKDGTFTNTERRVQRLYQALPTLGDAKPDWWIIQEVANRL 747
Query: 482 DLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGII------IPYKRLHTIRFQTPD 535
+ Y DI E + P A S E L+ N + L+ F PD
Sbjct: 748 G-ANWNYSHPSDIFSEMASLSPLFAKASYEVLEGWNSFLWGSFTGESTPLLYEDGFNFPD 806
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISES 595
KAR + P P EY L + R++ H++ G MT +S + + V IS
Sbjct: 807 KKARFALSDWTEPAAFPE-EYDLHINNGRMLEHFHEGNMTNKSKGIQAKVPNVFVEISPE 865
Query: 596 DAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFD-----ANILTNDALNK 649
A++ G+ DG LV++ + G++ L A I+ +V++ + +P + N LT A +K
Sbjct: 866 LAQERGVCDGSLVRLVSPFGAVKLNALITDRVRKNELYLPMNSTDKESAINFLTGPAADK 925
Query: 650 -AGTPELKYSSARI 662
TP K + R+
Sbjct: 926 RTNTPAYKQTKVRM 939
>pir||I40028 nitrate reductase (narB) - Bacillus subtilis (fragment)
>gi|710019|dbj|BAA06353.1| (D30689) catalytic subunit of
nitrate reductase [Bacillus subtilis]
Length = 676
Score = 379 bits (962), Expect = e-104
Identities = 236/645 (36%), Positives = 347/645 (53%), Gaps = 22/645 (3%)
Query: 39 RGKLCPKGLHALEFVLSKDRLRYPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAI 98
+G+LC KG++A + L+ R+ PL K +F+ + W++A+ I ++ I+ +G +A+
Sbjct: 25 QGRLCIKGMNAHQHALNSSRITRPLLKKNGEFMPVSWEEALNHIKDQVTMIQTEHGHDAM 84
Query: 99 AFIASSKVSNEENYLLQKIARL-LGTNNIDNCARLCHEASVHALKMTLGAGVQ-TNPYSD 156
A S+ ++NEE YLL K AR+ L T ID RLC A+ A T GA TNP SD
Sbjct: 85 AVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAATAANQTFGADRGLTNPLSD 144
Query: 157 LENFKAIMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTD 216
+ + + I++ G N AE P +M Y AK GA I ID RET T ++AD L I PGTD
Sbjct: 145 IPHTRVIILAGTNIAECQPTIMPYFEKAKENGAYFIAIDPRETATTKIADLHLKIKPGTD 204
Query: 217 ITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAR 276
LAN L+ +II E L +++F++SRT GF E+K + T + IR+ A
Sbjct: 205 AALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDSLDLNDIAEQTSVSLVDIRKAAV 264
Query: 277 EFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDK-GGLYPMRGQNNVQGAAY 335
+FAK SG + G+ Q G V ++M L+ G +G G + GQ N QGA
Sbjct: 265 KFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLITGKIGKPYSGYGAITGQGNGQGARE 324
Query: 336 MGALSEFLPGYVPLTDSTFRKRVASLWGV--EDIPTERGLYLTELWDAILEGEVKALYIM 393
G ++ LPGY + + R +A +WG+ +D+P +G+ E+ + I +G++K L++M
Sbjct: 325 HGQKADQLPGYRSIENEEHRAHIAKVWGIHQDDLP-RKGVSAYEVMEKINDGDIKGLFLM 383
Query: 394 GENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERR 453
NPAVS N V+KAL++L V DLF++ TA++A ILPA+++ E EG+ N E R
Sbjct: 384 CSNPAVSSPNANLVKKALRRLTFFVAIDLFISETAKYADVILPASSYLEDEGTMTNVEGR 443
Query: 454 IQWSFKVCDPPGEAKPDWEILSLLGKELDLPG-FPYEKVEDITEEYFKM----FPELAGI 508
+ PGEAK DW+I+ L L F Y EDI E + + +GI
Sbjct: 444 VTLREASRPCPGEAKHDWQIICDLASALGKGRYFSYTSAEDIFNELREASRGGIADYSGI 503
Query: 509 SVEELKNSNGIIIPYK--------RLHTIRFQTPDGKARLIAV--EQIMPWEQPNGEYPL 558
S L+ GI P RL T F PD KA L + E +P E+P +YPL
Sbjct: 504 SYGRLRREGGIHWPCPESDHPGTGRLFTESFAHPDQKAALSVIPNEPPVPKEKPTADYPL 563
Query: 559 ILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIV 618
LTT RVMSHY TG T +S +L E + I A Y I+D LVK+E+ RGSI
Sbjct: 564 YLTTGRVMSHYLTGVQTRKSAALAARHFESFMEIHPQTAATYNIEDRVLVKIESPRGSIT 623
Query: 619 LKAKIS-KVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSARI 662
+++K+S ++++ + VP H+ ND + +A P K ++
Sbjct: 624 VRSKLSEQIRKDTVFVPIHWADAQNVNDLIGEALDPACKMPGFKV 668
>pir||T35003 probable respiratory chain oxidoreductase - Streptomyces coelicolor
>gi|4007679|emb|CAA22365.1| (AL034443) putative
respiratory chain oxidoreductase [Streptomyces
coelicolor A3(2)]
Length = 642
Score = 364 bits (924), Expect = 2e-99
Identities = 231/643 (35%), Positives = 350/643 (53%), Gaps = 37/643 (5%)
Query: 44 PKGLHALEFVLSKDRLRYPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIAS 103
PK L L +D PL+ R W++A+ A L + +G +
Sbjct: 8 PKTYTRLTHPLVRDSREAPLR-------RATWEEALDRTARGLTAARGAFG-----MFSC 55
Query: 104 SKVSNEENYLLQKIARL-LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKA 162
++ +NE NY+ QK AR+ +GT+N+D+C R CH SV L G+G T+ Y ++E+
Sbjct: 56 ARATNEMNYVAQKFARVVMGTHNVDSCNRTCHAPSVAGLSAAFGSGGGTSSYEEIEHTDV 115
Query: 163 IMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANA 222
I++WG N HP+ ++L R GA++ V+D R T+T A+ L N GTDI LA+A
Sbjct: 116 IVMWGSNARFAHPIFFQHVLKGIRGGARMYVVDPRRTSTAEWAESWLGPNVGTDIPLAHA 175
Query: 223 LMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAG 282
+ II GL ++ F+ T G+ + K V+ +T AEKVTG+ A IRE+A +A+A
Sbjct: 176 VGREIIHAGLANEAFIERATTGYDDYKALVEPWTLSLAEKVTGVPAAAIRELAHAYARAE 235
Query: 283 SGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSE 341
+ W +G+T+H +G +NV A+I+++LL G+VG G GL P+RGQNNVQG MGA+
Sbjct: 236 RAQLCWTLGITEHHNGTDNVRALINLSLLTGHVGRYGSGLQPLRGQNNVQGGGDMGAIPN 295
Query: 342 FLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSE 401
LPG+ + D R++ + W + GL LTE+++A+ EG ++A+Y +GENPA SE
Sbjct: 296 RLPGFQDVLDPEVRRKFETAWDTV-VEPHHGLTLTEMFEAMDEGTLRAVYCIGENPAQSE 354
Query: 402 ANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPA-AAFCEKEGSYMNSERRIQWSFKV 460
A+ + + L+ L+ LVVQD+FLT+TA A +LPA A + E EG+ NSERR+Q +
Sbjct: 355 ADAEQAVRRLRALDFLVVQDIFLTKTAELADVVLPATAGWAETEGTTTNSERRVQRVRRA 414
Query: 461 CDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGII 520
PPGEA+ D +IL L L + Y E + E + P+ G++ L+ GI
Sbjct: 415 VSPPGEAREDIDILCDLAARLG-HDWKYADAEAVWNELRSLSPDHHGMTYARLEEHQGIQ 473
Query: 521 IPYKRLHTIR---------FQTPDGKARLI---AVEQIMPWEQPNGEYPLILTTVRVMSH 568
P + Q P + RL V P + + +YP+ LTT R +
Sbjct: 474 WPCPSTQELEPTYLHGRLWAQDPASRGRLAPFGIVRHDPPVDLTDEQYPIRLTTGRRLDS 533
Query: 569 YNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKI-SKVK 627
YNTG + S L V + DA++YG+ G+ V+V +RRGS++ + + ++
Sbjct: 534 YNTGVQSGGYAS--PLRRGESVELCPEDAERYGVVVGEEVRVTSRRGSLLAPVWVDTALR 591
Query: 628 EGVIVVPFHF----DANILTNDA-LNKAGTPELKYSSARIRKI 665
G+ + FHF D N LT +A AGT E K S+ RI K+
Sbjct: 592 PGLAFMSFHFPDEVDTNQLTIEANCPIAGTAEFKASAIRIEKV 634
>dbj|BAB04334.1| (AP001509) assimilatory nitrate reductase (catalytic subunit)
[Bacillus halodurans]
Length = 743
Score = 363 bits (923), Expect = 3e-99
Identities = 232/674 (34%), Positives = 361/674 (53%), Gaps = 34/674 (5%)
Query: 12 CPYCGFGCNL-LIDPKTLKVKPYKGEPNR------GKLCPKGLHALEFVLSKDRLRYPLK 64
CP+C C++ L + K + +K PN+ G+LC KG+HA + + ++R+R PL
Sbjct: 25 CPFCSVQCSMTLTEEKLVATSRFKAIPNKQDPTSEGRLCIKGVHAHQHTVHRERIRQPLV 84
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGT 123
K G FV W+ A+ IA + + +++ YG +A+ ++NEE YLL K ARL LGT
Sbjct: 85 KTGGAFVETSWEVALGLIAERFKRLQKSYGQDAVGVFGGGSLTNEEAYLLGKFARLALGT 144
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQ-TNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
ID R C ++ A +T G TN ++E+ + I++ G N AE P +M Y+
Sbjct: 145 RYIDYNGRYCMSSAAAAANLTFGVDRGLTNELREVEDAECIVLAGTNLAECQPTLMPYLR 204
Query: 183 NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
AK+ GA IIV+D RET T ++A+ L PGTD +A ++ V+I E L D+ F+ +RT
Sbjct: 205 RAKKNGAFIIVLDPRETGTTKIANLHLKPKPGTDGAIAAGMLKVLIEEELIDRTFIEART 264
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
GF +V+ +++ G+ + IRE A F +A +G I G+ Q +G +V
Sbjct: 265 NGFEQVESELQEIALAELALAAGVPEEQIREAAIRFGEAQTGMIFTARGVEQQATGTADV 324
Query: 303 IAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
+ + L G +G G + GQ N QG G ++ LPGY + R +AS+
Sbjct: 325 RQFLHILLATGKIGRYACGYGAVTGQGNGQGGREHGQKADQLPGYRSIESPEDRAYIASV 384
Query: 362 WGVE--DIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
W VE DIP +G+ EL+ I + +V+ ++IMG NP +S + V++AL +L++LVV
Sbjct: 385 WNVEEKDIP-RKGVSAFELFQKIDQQDVRGMFIMGSNPVLSSPHENLVKRALSRLDVLVV 443
Query: 420 QDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGK 479
D+F++ TA +A ILP ++ E EG+ N E R+ P G+AK DW+IL L +
Sbjct: 444 VDMFISETAEYADIILPTTSYLEDEGTMTNFEGRVVHRPGSKPPFGKAKHDWQILCELAE 503
Query: 480 ELDLP-GFPYEKVEDITEEYFKMF----PELAGISVEELKNSNGIIIPYK--------RL 526
LD GF + E+I E + +G+S E++K G++ P RL
Sbjct: 504 ALDRSHGFQFSSPEEIFNELCLASKGGKADYSGLSYEKIK-GEGVLWPCPTKEHEGTGRL 562
Query: 527 HTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMS 586
RF T DG+A+ +V P + N EYP++LTT RV++ Y +G T RS +L+
Sbjct: 563 FEDRFYTEDGRAQFGSVH--CPVDSENDEYPILLTTGRVLTQYLSGTQTRRSDALLFKEP 620
Query: 587 EPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHFDANILTND 645
EP V + A Y I+D D V V + G LKA+ S+ ++E + VPFH+ ++
Sbjct: 621 EPFVLLHPETASSYQIQDEDWVMVRSPYGEAKLKARQSEGIREDTVFVPFHWAGSV---- 676
Query: 646 ALNKAGTPELKYSS 659
++N PEL +S
Sbjct: 677 SINHVVAPELDPTS 690
>pir||A83424 assimilatory nitrate reductase PA1779 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947759|gb|AAG05168.1|AE004603_8 (AE004603)
assimilatory nitrate reductase [Pseudomonas aeruginosa]
Length = 908
Score = 342 bits (869), Expect = 6e-93
Identities = 226/701 (32%), Positives = 355/701 (50%), Gaps = 41/701 (5%)
Query: 6 RVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRY 61
R C YCG GC +LI+ ++ +G+P N G+LC KG + R Y
Sbjct: 8 RTTASTCCYCGVGCGVLIEHDGERILGVQGDPRHPANFGRLCSKGASLHLTGDLQARALY 67
Query: 62 PLKKVGSDFVRI--GWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR 119
P ++G R W+ A+ A + E +GP+++AF S ++ E+ Y K+AR
Sbjct: 68 PQLRLGKQLARARSDWESALEHAAGRFAETIREHGPDSVAFYISGQLLTEDYYAFNKLAR 127
Query: 120 -LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
L+GTNNID+ +RLC ++V K +LGA Y DL+ ++I G N A HPV+
Sbjct: 128 ALVGTNNIDSNSRLCMSSAVVGYKRSLGADAPPCSYEDLDCADCVLIAGSNMAFAHPVLF 187
Query: 179 DYILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKE 236
+ AK R +I+VID R T T LAD L + PGTD+ L + ++++++ E D+
Sbjct: 188 RRLEAAKAARPEMRIVVIDPRRTDTCELADLHLALLPGTDVALFHGILHILLWEDWIDRS 247
Query: 237 FVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHV 296
F+ T GF+++K V+ YTP + GI+ ++ A ++ +W MGL Q
Sbjct: 248 FIAEHTEGFADLKELVRDYTPAAVADICGIDRADLQRCAEWIGRSPRFLSLWCMGLNQSS 307
Query: 297 SGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFR 355
+G A+I++ L G +G G G + + GQ N G G+L+ LPG+ D R
Sbjct: 308 AGSAKNSALINLHLATGKIGRAGCGPFSLTGQPNAMGGRETGSLANLLPGHREAADPGHR 367
Query: 356 KRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLE 415
VA WGVE +PT GL EL+DA+ +G +KAL+I NPA S + K+ +AL +
Sbjct: 368 AEVAHYWGVEQLPTSPGLSAIELFDAVHDGRIKALWIACTNPAQSLPDQRKIHEALARCP 427
Query: 416 LLVVQDLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEIL 474
+VVQ+ F T T ++A +LPAA++ EKEGS NSERRI + PPGEA+ DW I+
Sbjct: 428 FVVVQEAFAGTETCQYADLLLPAASWGEKEGSVTNSERRISHVRRAVPPPGEARQDWNIV 487
Query: 475 SLLGKELD------LPG-FPYEKVEDITEEYFKMFP----ELAGISVEELKNSNGIIIPY 523
+ L+ PG F + + +EY + +L+G+S L P+
Sbjct: 488 CDFARRLEGHLRPAKPGLFAFADSRSLFDEYKLLTAGRDLDLSGLSYALLDRLGPQQWPF 547
Query: 524 --------KRLHTI-RFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEM 574
RL+ RF T G+A+L+A E+ + YPL L T R+ ++
Sbjct: 548 PTGAEQGTARLYADGRFPTASGRAQLVAEPYRAAQEKRDARYPLTLNTGRLRDQWHGMSR 607
Query: 575 TMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKI-SKVKEGVIVV 633
T L E +V++ + ++ + DG LV++++RRG++VL V+ G +
Sbjct: 608 TGTCARLFGHEEEALVHLHPEELRRRQLLDGQLVRLKSRRGALVLPVSADDSVRPGQAFL 667
Query: 634 PFHF--------DANILTNDALNK-AGTPELKYSSARIRKI 665
P H+ N+LT A + + PELK++ ++ +
Sbjct: 668 PMHWGDRFLKGLGCNVLTLPAFDPLSKQPELKHAGVQVESV 708
>sp|P39458|NARB_SYNP7 NITRATE REDUCTASE >gi|480267|pir||S36605 nitrate reductase (EC
1.7.99.4) chain A - Synechococcus sp. (strain PCC 7942)
>gi|397158|emb|CAA52675.1| (X74597) nitrate reductase
[Synechococcus sp.]
Length = 729
Score = 336 bits (852), Expect = 6e-91
Identities = 222/703 (31%), Positives = 349/703 (49%), Gaps = 51/703 (7%)
Query: 9 RVVCPYCGFGCNLLI----DPKTLKVKPYKGEP------------NRGKLCPKGLHALEF 52
+ +CPYCG GC L P V+ +G P ++G +C KG E
Sbjct: 20 KTLCPYCGVGCGLEAVPPAQPGRATVRDREGTPIWQIRGDRQHPSSQGMVCVKGATVAES 79
Query: 53 VLSKDRLRYPLKKVGSD--FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEE 110
V SK RL+YP+ + D F I WD+A+ + ++++ + YG + I F S + E+
Sbjct: 80 V-SKSRLKYPMFRASLDDPFTEISWDEALDRLCDRIQQTQADYGKDGICFYGSGQFQTED 138
Query: 111 NYLLQKIAR-LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYN 169
Y+ QK+ + LGTNN D +RLC ++V A + LG+ Y DL+ ++I G N
Sbjct: 139 YYIAQKLVKGCLGTNNFDTNSRLCMSSAVSAYSLCLGSDGPPACYEDLDLADCLLIVGSN 198
Query: 170 PAETHPVVMD-YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVII 228
AE HP++ + Y K+ G +IV+D R T T +AD L + PG+D+ L N L ++
Sbjct: 199 TAECHPILFNRYRKRHKQGGTNLIVVDPRCTPTAEVADLHLALKPGSDVALLNGLGWLLY 258
Query: 229 SEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMW 288
G K+F+ ++T GF + ++ Y P+ ++TG+ + A A A +W
Sbjct: 259 QMGYVKKDFIANQTEGFEDWLAIIEDYPPQRTAELTGLAVAELVRAADLIASAQRWLSLW 318
Query: 289 GMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYV 347
MG+ Q + G ++I++ LL +G G G + + GQ N G G L+ LPGY
Sbjct: 319 SMGVNQSIQGTAKATSLINLHLLTRQIGLPGCGPFSLTGQPNAMGGRETGGLAHLLPGYR 378
Query: 348 PLTDSTFRKRVASLWGVE--DIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVL 405
+ D R V ++WG+ I + G ++ + + +G V L++ NPAVS +V
Sbjct: 379 KVIDPQHRADVETIWGLPMGSISPQPGRTAWQMIEGLEQGAVGFLWVAATNPAVSLPDVK 438
Query: 406 KVRKALQKLELLVVQDLF-LTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPP 464
+ + AL++ V+QD + T T +AH +LPAA + EK G+ NSERR+ PP
Sbjct: 439 RAQAALKRSPFTVLQDAYHPTETTTYAHLLLPAAQWSEKTGTMTNSERRVTLCQAFRQPP 498
Query: 465 GEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKM----FPELAGISVEELKNSNGII 520
GEA+ DW+I + +G+ L F Y + EY ++ +L+G+S E L +
Sbjct: 499 GEARADWQIFAEVGRRLGF-AFDYTDAAAVFAEYVQVTAGRLCDLSGLSHELLAQAGPQQ 557
Query: 521 IPY----------KRLHT-IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHY 569
P+ KRL+T F DG+AR + E P+ YPL+LT R+ +
Sbjct: 558 WPFPAGAEPTTESKRLYTKHHFAYADGRARFQPFHHLGVAEPPDDRYPLVLTVGRLYPDW 617
Query: 570 NTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKI-SKVKE 628
+T T R + KL V I DA +Y I +G V + +RRG AK+ + +
Sbjct: 618 HTQTRTGRIDKINKLHPSAFVEIHPRDADRYNISEGQAVVIRSRRGEGCFPAKVTTAISP 677
Query: 629 GVIVVPFHF--------DANILTNDALNK-AGTPELKYSSARI 662
GV+ VP H+ +AN LT+ A +G PELK + +I
Sbjct: 678 GVLFVPMHWGALWGDRTEANALTHPAACPISGEPELKACAVQI 720
>pir||S57966 NarB protein - Oscillatoria chalybea >gi|2147816|pir||S65758
nitrate reductase (EC 1.7.99.4) chain A narB -
Oscillatoria chalybea >gi|899356|emb|CAA61613.1|
(X89445) NarB protein [Oscillatoria chalybea]
>gi|1587167|prf||2206299B nitrate reductase
[Oscillatoria chalybea]
Length = 737
Score = 332 bits (841), Expect = 1e-89
Identities = 224/705 (31%), Positives = 346/705 (48%), Gaps = 52/705 (7%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPY----KGEP------------NRGKLCPKGLHALEF 52
+ +CPYCG GC L + P KP +G P ++G +C KG E
Sbjct: 6 KTLCPYCGVGCGLEVSPPARSGKPVNRDSQGYPVWKVQGDREHPSSQGMVCVKGATIAES 65
Query: 53 VLSKDRLRYPLKKVGSD--FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEE 110
L KDRL YP+ + D F R+ WD+A+ I ++++ ++ G AI S + E+
Sbjct: 66 -LHKDRLLYPMMRESLDKPFRRVSWDEALNAIVNRIQTVRFTQGAEAICMYGSGQFQTED 124
Query: 111 NYLLQKIAR-LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYN 169
Y+ QK+ + LGTNN D +RLC ++V A + G+ Y DL+ + G N
Sbjct: 125 YYVAQKLMKGCLGTNNFDANSRLCMSSAVAAYIQSFGSDGPPCCYDDLDLTDCAFLVGTN 184
Query: 170 PAETHPVVMDYILNAKRKG---AKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNV 226
AE HP++ + + +K K++V+D R T T AD L I PGTDI L N + +
Sbjct: 185 TAECHPIIFNRLRKHHKKNNGKVKMVVVDPRRTATAEAADLHLAIKPGTDIDLFNGMAYL 244
Query: 227 IISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAI 286
++ G D F+ T F ++ Y PE + GI + + AR +A++
Sbjct: 245 LMRWGKIDTIFIDECTSNFPAYCEVIRHYPPEVVARKCGITVEELETAARYWAESERVLS 304
Query: 287 MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPG 345
+W MG+ Q G +I++ L+ +G G G + + GQ N G G LS LPG
Sbjct: 305 LWSMGINQSSEGTAKARTLINLHLMTAQIGKPGAGPFSLTGQPNAMGGREAGGLSHLLPG 364
Query: 346 YVPLTDSTFRKRVASLWG--VEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEAN 403
Y + ++ R V WG V I ERGL + E+ + G+V ++I NPAVS +
Sbjct: 365 YRVVKNARHRSEVEKFWGLPVGRIAPERGLTVWEMILGLEMGKVGLVWIAATNPAVSMPD 424
Query: 404 VLKVRKALQKLELLVVQDLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCD 462
+ + +KAL + V QD + T TA +AH +LPAA + EK G NSERRI D
Sbjct: 425 LERTKKALSRSPFTVYQDAYYPTETANYAHVLLPAAQWSEKTGVMTNSERRITLCQAFRD 484
Query: 463 PPGEAKPDWEILSLLGKELD-LPGFPYEKVEDITEEYFKMFP----ELAGISVEELKNSN 517
PGEAK DWEI + +G+ L + F + ++ E+ ++ E GI + L
Sbjct: 485 RPGEAKADWEIFAEVGRRLGFVEQFNFANSAEVYAEFTQLTKGRPCEQTGIGHQRLGADG 544
Query: 518 GIIIP---------YKRLHT-IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMS 567
+ P RL+T +RF TPDG+A+ A E P+ ++P +LT R+
Sbjct: 545 PLQWPCPEEAGENNAARLYTDLRFHTPDGRAKFAAYHSRGLAEPPDPDFPFVLTNGRLYG 604
Query: 568 HYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-V 626
H++T T R ++ +P + I DA K GI+D D V+V +RRG AK++K +
Sbjct: 605 HWHTLTRTGRIEKTKQMHPQPFIEIHPRDAGKLGIEDEDWVEVRSRRGMARFPAKVTKAI 664
Query: 627 KEGVIVVPFHF--------DANILTN-DALNKAGTPELKYSSARI 662
G + VP H+ +AN +T+ ++ + PELK + ++
Sbjct: 665 APGTVFVPMHWGELWADSAEANAMTHPESCPDSLQPELKACAVQL 709
>gb|AAD45942.1|AF089813_5 (AF089813) nitrate reductase [Synechococcus PCC7002]
Length = 742
Score = 330 bits (838), Expect = 2e-89
Identities = 231/728 (31%), Positives = 350/728 (47%), Gaps = 75/728 (10%)
Query: 6 RVIRVVCPYCGFGCNLLI------DPKTLKVKPYKGEPNR-GKLCPKGLHALEFVLSKDR 58
R + +CPYCG GC L + + TLKV + P+ GK+C KG E L +DR
Sbjct: 4 RKTKTLCPYCGVGCGLEVSEVIKNEQPTLKVMGDRQHPSSLGKVCVKGATIAES-LDQDR 62
Query: 59 LRYPL--KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQK 116
L YP+ + + F RI WDDA I +++ +K G IA S ++ E+ Y QK
Sbjct: 63 LLYPMYRRSLQDQFQRISWDDAFELIVEQIKTVKATLGSEGIAMYGSGQLQTEDYYTAQK 122
Query: 117 IAR-LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHP 175
+ + LGTNN D +RLC ++V + GA Y DLE I G N AE HP
Sbjct: 123 LLKGCLGTNNFDANSRLCMSSAVAGYIQSFGADGPPPCYEDLELTDCAFIIGSNTAECHP 182
Query: 176 VVMDYIL-NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYD 234
+V + + + KR AK+IV+D R T T +AD L I PGTDI L N + ++++ G D
Sbjct: 183 IVFNRLREHHKRSKAKLIVVDPRRTKTAEVADLHLAIKPGTDIDLLNGIAHLLLKWGKID 242
Query: 235 KEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQ 294
F+ T GFS+ M ++ YTPE + GI + + A+ +A A + +W MG+ Q
Sbjct: 243 TLFIDECTKGFSKYAMLIQSYTPETVARRCGIRIDHLEQAAKYWANADNVLSLWSMGMNQ 302
Query: 295 HVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDST 353
G V +I++ L+ G +G G G + + GQ N G G L+ LPGY + +
Sbjct: 303 SAEGTAKVRTLINLHLMTGEIGKPGAGPFSLTGQPNAMGGREAGGLAHLLPGYRLVKNPE 362
Query: 354 FRKRVASLW-----GVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVR 408
R + W + +P + + E D G V L+++ NPAVS ++ + +
Sbjct: 363 HRATLEKAWQLPPGTISPLPGKDAWAMIEGLDM---GTVGLLWVVATNPAVSMPDLERTK 419
Query: 409 KALQKLELLVVQDLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEA 467
AL K + QD + T T+ +AH +LPA + EK G+ NSER + + + D PGEA
Sbjct: 420 AALLKSPFTICQDAYYPTETSNYAHLLLPALQWGEKTGAMTNSERVVTYCPQFRDRPGEA 479
Query: 468 KPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAG-------------------- 507
DWEI + +G+ L GF + + E + F +L G
Sbjct: 480 WADWEIFAEVGRRL---GFQQQFRAVSSAEVYAEFVQLTGDRPCDMTGLSHQRLATEGPI 536
Query: 508 ----------ISVEELKNSNGII---------IPYKRLHT-IRFQTPDGKARLIAVEQIM 547
E ++ G++ + KRL+T RF TPDG+AR A
Sbjct: 537 QWPCPANETKCDPETTADNRGLLQKLFHQDEPLKGKRLYTDRRFHTPDGRARFAAYHSRG 596
Query: 548 PWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDL 607
E PN +YP +LT R+ H++T T R + K+ P + I DA + I DG++
Sbjct: 597 LAEPPNTDYPFVLTIGRLYGHWHTMTRTGRIKKIQKMHPNPFLEIHPRDADRLSITDGEM 656
Query: 608 VKVETRRGSIVLKAKISK-VKEGVIVVPFHF--------DANILTN-DALNKAGTPELKY 657
V+V + RG A I+K + G + P H+ +AN L++ +A + PELK
Sbjct: 657 VEVRSPRGMARFPALITKNITPGTVFAPMHWGALWGEDTEANALSHAEACPDSLQPELKA 716
Query: 658 SSARIRKI 665
+ ++KI
Sbjct: 717 CAVNVQKI 724
>gb|AAB40292.1| (L49163) narB [Anabaena PCC7120]
Length = 746
Score = 329 bits (835), Expect = 5e-89
Identities = 224/723 (30%), Positives = 349/723 (47%), Gaps = 70/723 (9%)
Query: 9 RVVCPYCGFGCNLLIDPK---------------TLKVKPYKGEPN-RGKLCPKGLHALEF 52
+ +CPYCG GC L + P T +V+ K P+ +G +C KG E
Sbjct: 6 KTLCPYCGVGCGLEVTPPAQLNKATNRDSQGNPTWRVRGDKAHPSSQGMVCVKGATIAES 65
Query: 53 VLSKDRLRYPL--KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEE 110
L K+RL YP+ + + +F R+ WD+A I +++ ++ G AI S + E+
Sbjct: 66 -LDKNRLHYPMVRESLDQEFRRVSWDEAFDLITKRIQSVRFTQGAEAICMYGSGQFQTED 124
Query: 111 NYLLQKIAR-LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYN 169
Y+ QK+ + LG+NN D +RLC ++V + GA Y DLE + G N
Sbjct: 125 YYIAQKLMKGCLGSNNFDANSRLCMSSAVSGYIQSFGADGPPCCYEDLELTDCAFLIGTN 184
Query: 170 PAETHPVVMDYILNAKRKGAKI--IVIDVRETTTMRLADYKLMINPGTDITLANALMNVI 227
AE HP+V + + RK K+ IV+D R T T AD L I PGTDI L N + +++
Sbjct: 185 TAECHPIVFNRLEKYHRKNHKVKMIVVDPRRTPTAEAADLHLAIKPGTDIDLLNGIAHLL 244
Query: 228 ISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM 287
+ + D F+ T FS ++ Y+PE + GI + + +R + ++ +
Sbjct: 245 MRWNMIDVGFIDDCTRNFSAYAEVIRHYSPEVVARQCGITIEDLETASRYWGESQRVLSL 304
Query: 288 WGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGY 346
W MG+ Q G V +I++ L+ G VG G G + + GQ N G G L+ LPGY
Sbjct: 305 WSMGVNQSSEGTAKVRTIINLHLMTGQVGKPGAGPFSLTGQPNAMGGREAGGLAHLLPGY 364
Query: 347 VPLTDSTFRKRVASLWGVE--DIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANV 404
+ + R + + WG + I GL ++ + +G V L+I NPAVS ++
Sbjct: 365 RLVKNPQHRAELEAFWGFQPGQISPHPGLTAWDMITGLEDGNVGLLWIAATNPAVSMPDL 424
Query: 405 LKVRKALQKLELLVVQDLF-LTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDP 463
+ +KAL + + QD + T T +AH +LPAA + EK G NSERR+ P
Sbjct: 425 ERTKKALLRSPFTIYQDAYHPTETTAYAHVLLPAAQWGEKTGIMTNSERRVTLCQAFRQP 484
Query: 464 PGEAKPDWEILSLLGKELDLPG-FPYEKVEDITEEYFKMFP----ELAGISVEELKNSNG 518
P EAKPDWEI + +G+ L F + + E+ ++ +++GIS ++L+
Sbjct: 485 PREAKPDWEIFAEVGRRLGFEDKFAFTNSAQVYAEFTQLTKGRPCDMSGISHQQLQAQGP 544
Query: 519 IIIPY----------------------------KRLHT-IRFQTPDGKARLIAVEQIMPW 549
P+ KRL+T +RF TPDG+AR A
Sbjct: 545 TQWPHSSINIETQKPTQHPTVNSQQSTVTSQQSKRLYTDLRFHTPDGRARFGAYYSKGLA 604
Query: 550 EQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVK 609
E P+ YP +LTT R+ H++T T R + + EP + I DA K GI D +V+
Sbjct: 605 EPPDPSYPFVLTTGRLYGHWHTQTRTGRIEKIRAMHPEPFIEIHPRDAAKLGITDNVVVE 664
Query: 610 VETRRGSIVLKAKISK-VKEGVIVVPFHF--------DANILT-NDALNKAGTPELKYSS 659
V +RRGS AK++K + G + VP H+ +AN LT +++ + PELK +
Sbjct: 665 VRSRRGSAKFPAKVTKAISPGTVFVPMHWGKLWADDAEANALTHSESCPDSLQPELKACA 724
Query: 660 ARI 662
++
Sbjct: 725 VQL 727
>sp|P73448|NARB_SYNY3 NITRATE REDUCTASE >gi|7431434|pir||S77385 nitrate reductase (EC
1.7.99.4) chain A narB - Synechocystis sp. (strain PCC
6803) >gi|1652567|dbj|BAA17488.1| (D90906) nitrate
reductase [Synechocystis sp.]
Length = 714
Score = 328 bits (833), Expect = 9e-89
Identities = 215/705 (30%), Positives = 357/705 (50%), Gaps = 49/705 (6%)
Query: 9 RVVCPYCGFGCNL---------LIDP-KTLKVKPYKGEPN-RGKLCPKGLHALEFVLSKD 57
R +CPYCG GC L ++D K++ + P+ +G +C KG +E + K
Sbjct: 11 RTLCPYCGVGCGLEAVASPQKSVVDAGHAHKIRGDRQHPSSQGMVCVKGATVMES-MDKQ 69
Query: 58 RLRYPLKKVGSD--FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQ 115
RL YP+ + D + +I W+ A+ + K++++K+ G + + AS ++ E+ Y+ Q
Sbjct: 70 RLLYPMFRSSLDQPWQQISWEAALEIVVDKIQQVKQTLGVSGLCMYASGQMQTEDYYVAQ 129
Query: 116 KIAR-LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETH 174
K+ + LGTNN D +RLC ++V A ++ G+ Y DLE + G N A+ H
Sbjct: 130 KLFKGCLGTNNFDTNSRLCMSSAVSAYSLSFGSDGPPCCYEDLEITDCAFLIGTNTADCH 189
Query: 175 PVVMDYILNAKRKG--AKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGL 232
P++ + + ++ K+IV+D R T T +AD L INPG+DITL + + ++ L
Sbjct: 190 PIIFNRLRKHHKQNPHVKLIVVDPRCTATAEVADLHLAINPGSDITLLHGIAYLLKKWNL 249
Query: 233 YDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGL 292
D++F+ + T F + + Y PE ++ GI + + A + A + +W MG+
Sbjct: 250 IDQKFIDNHTQDFEQYCQVIDHYPPEKVTQICGISLEQLETAAHYWGNAKTVLSLWSMGM 309
Query: 293 TQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTD 351
Q G +I++ LL G +G G G + + GQ N G G LS LPGY + +
Sbjct: 310 NQSFQGTAKGRCLINLHLLTGQIGKPGSGPFSLTGQPNAMGGREAGGLSHLLPGYRSIKN 369
Query: 352 STFRKRVASLWGVED--IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRK 409
R+ V LW + I E GL E++ + +V L+I+ NP VS ++ +V+K
Sbjct: 370 PQHRQEVEQLWQISPGRINPEPGLSAWEMFMGLENQQVGFLWIVATNPVVSMPDLERVKK 429
Query: 410 ALQKLELLVVQDLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAK 468
ALQ+ + QD + T TA +AH +LPAA + EK G+ NSERR+ S PPGEA+
Sbjct: 430 ALQQSTFTIHQDAYSPTETAEYAHLLLPAAQWSEKTGTMTNSERRVTLSPAFRSPPGEAR 489
Query: 469 PDWEILSLLGKELDLPG-FPYEKVEDITEEYFKMFPE----LAGISVEELK--------- 514
PDWEI + +G+ L F + + EY ++ E +G+S E+L+
Sbjct: 490 PDWEIFAEVGRRLGFENQFNFVDSAAVHREYVQLTAERLCDQSGVSYEKLQKLGPLQWPC 549
Query: 515 ---NSNGIIIPYKRLHT-IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYN 570
+ ++ KRL+T +F T +G+A E + YP +LT R+ H++
Sbjct: 550 RQSDQESQLLSTKRLYTDYKFCTENGRANFCLDHSRGLAEPVDPNYPFVLTNGRLYGHWH 609
Query: 571 TGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEG 629
T T + K+ +P++ + DA+K GIK DLV +++RRGS L+ +++ + G
Sbjct: 610 TQTRTGHIEKIKKMHPKPILEMHPKDAEKLGIKSQDLVAIKSRRGSAQLEVLVTRAIAPG 669
Query: 630 VIVVPFHF--------DANILTN-DALNKAGTPELKYSSARIRKI 665
+ +P H+ + N LT+ A + PELK + I +
Sbjct: 670 TVFMPMHWGFLWDDNAEVNSLTHATACPISKQPELKACAVNITPV 714
>pir||C81298 probable formate dehydrogenase (EC 1.2.1.2) large chain Cj1511c
[similarity] - Campylobacter jejuni (strain NCTC 11168)
Length = 934
Score = 320 bits (811), Expect = 4e-86
Identities = 206/596 (34%), Positives = 311/596 (51%), Gaps = 48/596 (8%)
Query: 4 GDRVIRVVCPYCGFGCNLLIDPKT---LKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRL 59
G + ++ VC C GC ++ + + ++ + + P + G C KG ++ V S RL
Sbjct: 49 GSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRL 108
Query: 60 RYPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR 119
+YP+KK ++ RI ++ A+ EI KL ++ P ++ F+ S+K++NE+ Y ++K A
Sbjct: 109 KYPMKKENGEWKRISYEQALSEIGEKLAAYRKE-NPESVMFLGSAKLNNEQAYYIRKFAA 167
Query: 120 LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
GTNN+D+ AR+CH A+V + T G G TN D++ K I+I G NPA HPV
Sbjct: 168 FFGTNNVDHQARICHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFR 227
Query: 180 YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+ L AK KGAK+IV+D R T + AD I PGTDI ++ +I EGL D +++
Sbjct: 228 HFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLD 287
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
R G +++ K+T E E VTGI +L+ ++ E AK ++W MGLTQH G
Sbjct: 288 ERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGT 347
Query: 300 ENVIAVIDMALLLGYVGD-KGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRV 358
N + ++LG +G GG+ +RG +NVQGA+ M LSE LPGY PL ++T+R
Sbjct: 348 SNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWR-YY 406
Query: 359 ASLWGVE-----------DIPTERGLYLTELWDAILEGE------------VKALYIMGE 395
A +WGV+ D + GL L W A L G+ +KAL +MG
Sbjct: 407 AKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMG- 465
Query: 396 NPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAH-----YILPAAAFCEKEGSYMNS 450
N S A +KV++ L+ LELLV+ D F+ A Y+LPAA E GS +
Sbjct: 466 NGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTAT 525
Query: 451 ERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFK-MFPELAGIS 509
R QW FKV DP E+ D EIL L K+L GF + + + +E + ++PE A
Sbjct: 526 NRSGQWRFKVVDPLYESMEDQEILFELAKKL---GFYEDFTKTLRDEKGEIVWPENATRE 582
Query: 510 VEELKNS---NGIIIPYKRLHTIRFQ-----TPDGKARLIAVEQIMPWEQPNGEYP 557
+ + S NG + HT+ + T +GK + +PW + ++P
Sbjct: 583 IAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHP 638
>gb|AAF74559.1|AF203789_1 (AF203789) assimilatory nitrate reductase [Pseudomonas putida]
Length = 724
Score = 316 bits (802), Expect = 4e-85
Identities = 217/687 (31%), Positives = 341/687 (49%), Gaps = 44/687 (6%)
Query: 8 IRVVCPYCGFGCNLLI---DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLR--Y 61
+R VCPYCG GC +++ D K K+ K P N G+LC KGL A + + + R+ Y
Sbjct: 6 VRSVCPYCGVGCGIVMSVADGKVGKISGDKLHPSNFGRLCTKGLTAHQPLSASGRMADAY 65
Query: 62 PLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-L 120
++ VR D AI A +LR I +++GP+A+A S ++S E YL K+A+
Sbjct: 66 LRQQRSQPPVRTSMDQAIAATAERLRGIIDQHGPDAVALYVSGQMSLEAQYLANKLAKGF 125
Query: 121 LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY 180
+ T +I++ +RLC ++ K++LGA Y D E+ ++ G N A+ HP++
Sbjct: 126 IRTRHIESNSRLCMASASSGYKLSLGADGPPGSYQDFEHADVFLVIGANMADCHPILFLR 185
Query: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
+L+ + GAK+IV+D R + T AD L + PG+D+ L N L++++ G + +F+
Sbjct: 186 LLDRVKAGAKLIVVDPRRSATADKADLFLQVRPGSDMALLNGLLHLLHRNGHTNPDFIAR 245
Query: 241 RTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
T G+ E+ + YTPE +TG+ I + A A + W MGL Q + G
Sbjct: 246 HTEGWDEMPAFLDDYTPERVAAITGLAEADIIKAAEWIGSANNWMSCWTMGLNQSIHGTW 305
Query: 301 NVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVA 359
+ A+ ++ L G + G G + + GQ N G MG + LPG R V
Sbjct: 306 HSNAICNLHLATGAICRPGSGPFSLTGQPNAMGGRDMGYMGPGLPGQRSALVEDDRAFVE 365
Query: 360 SLWGVE--DIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELL 417
W + + +E G L+ + GEVKA +++ NP S AN +V L+K EL+
Sbjct: 366 RQWQLPPGSLRSEGGEGTVALFGQMKAGEVKACWVICSNPVASVANRQQVIDGLRKAELV 425
Query: 418 VVQDLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSL 476
+ QD FL T T R+A +LPAA + E EG +NSER + + +PPG++ PDW+I++
Sbjct: 426 ITQDAFLDTETNRYADILLPAALWAEGEGVMINSERNLTLMPRAVEPPGQSLPDWQIIAR 485
Query: 477 LGKELD-LPGFPYEKVEDITEEYFKMFP-----ELAGISVEELK---------------- 514
+ + F Y E + EE + +L GI EL+
Sbjct: 486 VACAMGYADAFDYPNAEAVYEEIRRFHNPSTGYDLRGIGYAELRTQPRQWPCAPGSEQHR 545
Query: 515 ---------NSNGIIIPYK-RLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVR 564
+S +++ + R + F T GKA A + E P+ +YP++L T R
Sbjct: 546 SPLRYLNDGSSQALLLDARGRRPALAFPTASGKAHFFARPWLPAAEVPDDDYPMVLNTGR 605
Query: 565 VMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS 624
V ++T T + P+L KL P + I DA + G+ + D V V +RRG VL A+IS
Sbjct: 606 VQHQWHTLTKTGKVPALNKLEPGPYLEIHPEDAARLGVAEKDQVAVRSRRGQAVLPARIS 665
Query: 625 -KVKEGVIVVPFHFDANILTNDALNKA 650
+V G PFH++ I A+N A
Sbjct: 666 DRVMPGNCFAPFHWNDLIGEQLAINAA 692
>sp|P81186|NAPA_DESDE PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|3820902|emb|CAA77019.1|
(Y18045) nitrate reductase [Desulfovibrio desulfuricans]
Length = 755
Score = 314 bits (797), Expect = 2e-84
Identities = 228/718 (31%), Positives = 350/718 (47%), Gaps = 59/718 (8%)
Query: 5 DRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNR---GKLCPKGLHALEFVLSKDRLRY 61
++ ++ VC YCG GC +L+ K K +G+PN G LC KG + + SK+R+
Sbjct: 38 EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGDPNNHNAGLLCLKGSLLIPVLNSKERVTQ 97
Query: 62 PL--KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR 119
PL + G + WD+A+ +AS+ R + YGPN++A+ S + EE+Y+ KI +
Sbjct: 98 PLVRRHKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFK 157
Query: 120 L-LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
GTNN+D RLC ++V + G Y+D++ I G N +E HPV+
Sbjct: 158 GGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAHPVLF 217
Query: 179 DYILNAKR--KGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKE 236
I K+ G KIIV D R T T R+AD + PGTD+ +++ VII+E L +
Sbjct: 218 RRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDNPR 277
Query: 237 F---------VRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM 287
F + F K ++ Y PE ++ + + I AR FA++ + +
Sbjct: 278 FWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSL 337
Query: 288 WGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL-YPMRGQNNVQGAAYMG-ALSEFLPG 345
W MG+ Q V GV + ++ L+ G + G + + GQ N G G ALS LP
Sbjct: 338 WCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPA 397
Query: 346 YVPLTDSTFRKRVASLWGVED--IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEAN 403
+ ++ R + LWG+ + I E G + L++A+ G+VK + I NPA + N
Sbjct: 398 GRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPN 457
Query: 404 VLKVRKALQKLELLVV--QDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVC 461
+ KV KA+ E +V + T +A +LP A +CE++G Y ERR + K
Sbjct: 458 LNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLTEKAV 517
Query: 462 DPPGEAKPDWEILSLLGKE--LDLPGFPYEKVEDITEEYFKMFP----ELAGISVEELKN 515
DPPG+ +P L + +D + ED+ E+ + + G++ E L+
Sbjct: 518 DPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRK 577
Query: 516 SNGIIIPYKR-------LHTIRFQTP----------------DGKARLIAVEQIMPWEQP 552
+G+I P L +R Q P DG+A + E+P
Sbjct: 578 ESGLIWPCPSEDHPGTSLRYVRGQDPCVPADHPDRFFFYGKPDGRAVIWMRPAKGAAEEP 637
Query: 553 NGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVET 612
+ EYPL LT++RV+ H++T MT + P L K V I+E DA + GIK GD V VET
Sbjct: 638 DAEYPLYLTSMRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKHGDSVIVET 697
Query: 613 RRGSIVLKAKISKV-KEGVIVVPFHFDANILTN----DALNKAG-TPELKYSSARIRK 664
RR ++ L A++S V + G+I VPF FD L N DA + PE K +AR+RK
Sbjct: 698 RRDAMELPARVSDVCRPGLIAVPF-FDPKKLVNKLFLDATDPVSREPEYKICAARVRK 754
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
Length = 723
Score = 314 bits (795), Expect = 3e-84
Identities = 228/718 (31%), Positives = 349/718 (47%), Gaps = 59/718 (8%)
Query: 5 DRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNR---GKLCPKGLHALEFVLSKDRLRY 61
++ ++ VC YCG GC +L+ K K +G PN G LC KG + + SK+R+
Sbjct: 6 EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGNPNNHNAGLLCLKGSLLIPVLNSKERVTQ 65
Query: 62 PL--KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR 119
PL + G + WD+A+ +AS+ R + YGPN++A+ S + EE+Y+ KI +
Sbjct: 66 PLVRRHKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFK 125
Query: 120 L-LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
GTNN+D RLC ++V + G Y+D++ I G N +E HPV+
Sbjct: 126 GGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAHPVLF 185
Query: 179 DYILNAKR--KGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKE 236
I K+ G KIIV D R T T R+AD + PGTD+ +++ VII+E L +
Sbjct: 186 RRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDNPR 245
Query: 237 F---------VRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM 287
F + F K ++ Y PE ++ + + I AR FA++ + +
Sbjct: 246 FWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSL 305
Query: 288 WGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL-YPMRGQNNVQGAAYMG-ALSEFLPG 345
W MG+ Q V GV + ++ L+ G + G + + GQ N G G ALS LP
Sbjct: 306 WCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPA 365
Query: 346 YVPLTDSTFRKRVASLWGVED--IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEAN 403
+ ++ R + LWG+ + I E G + L++A+ G+VK + I NPA + N
Sbjct: 366 GRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPN 425
Query: 404 VLKVRKALQKLELLVV--QDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVC 461
+ KV KA+ E +V + T +A +LP A +CE++G Y ERR + K
Sbjct: 426 LNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLTEKAV 485
Query: 462 DPPGEAKPDWEILSLLGKE--LDLPGFPYEKVEDITEEYFKMFP----ELAGISVEELKN 515
DPPG+ +P L + +D + ED+ E+ + + G++ E L+
Sbjct: 486 DPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRK 545
Query: 516 SNGIIIPYKR-------LHTIRFQTP----------------DGKARLIAVEQIMPWEQP 552
+G+I P L +R Q P DG+A + E+P
Sbjct: 546 ESGLIWPCPSEDHPGTSLRYVRGQDPCVPADHPDRFFFYGKPDGRAVIWMRPAKGAAEEP 605
Query: 553 NGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVET 612
+ EYPL LT++RV+ H++T MT + P L K V I+E DA + GIK GD V VET
Sbjct: 606 DAEYPLYLTSMRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKHGDSVIVET 665
Query: 613 RRGSIVLKAKISKV-KEGVIVVPFHFDANILTN----DALNKAG-TPELKYSSARIRK 664
RR ++ L A++S V + G+I VPF FD L N DA + PE K +AR+RK
Sbjct: 666 RRDAMELPARVSDVCRPGLIAVPF-FDPKKLVNKLFLDATDPVSREPEYKICAARVRK 722
>pir||B70320 nitrate reductase (EC 1.7.99.4) chain A narB - Aquifex aeolicus
>gi|2982925|gb|AAC06542.1| (AE000678) nitrate reductase
narB [Aquifex aeolicus]
Length = 666
Score = 313 bits (793), Expect = 5e-84
Identities = 211/671 (31%), Positives = 340/671 (50%), Gaps = 30/671 (4%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVGS 68
R CPYCG GC L I+ K ++ N G +C K L+ L VL++ R+ P+ +
Sbjct: 3 RFQCPYCGVGCGLYINEKGKVKGDFEHPANLGDICKKPLY-LPKVLNRGRIAKPMYRENK 61
Query: 69 D--FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGTNN 125
F I W++A + KL + P+ F S ++ E+ Y+ K + L TNN
Sbjct: 62 SHSFREISWEEAYEILKEKLIS----FSPDETYFYLSGQLLTEDIYVANKFVKGFLRTNN 117
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAK 185
+D +RLC ++V A K+ G+ Y D+++ A + G N A HPV+ +L +
Sbjct: 118 VDANSRLCMASAVTAYKLAFGSDGVPCTYEDVDDADAFLFIGSNAAVAHPVLFKRVLKRR 177
Query: 186 RKGAKIIVI--DVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTV 243
++ K+I++ D ET T + +D + I GTD N+++ V+ EG D F+ + T
Sbjct: 178 KEEEKVIIVTVDPLETETAKRSDVFIQIKAGTDTVFLNSVLYVLHKEGWIDYRFIYNYTE 237
Query: 244 GFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVI 303
GF E K+ P+ A + ++ + + VA FA + W GL Q ++G +
Sbjct: 238 GFEEALEVAMKFPPDVAASICSVKPEDVYLVAELFAHSKKLISFWCQGLNQSLNGTMKNL 297
Query: 304 AVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWG 363
A+I++ L G + +KG + + GQ N G +G L+ LPGY + + R + WG
Sbjct: 298 ALINLHLATGRLNEKGCPFSLTGQPNAMGGREVGYLTNGLPGYRDVRNKADRAFMEKFWG 357
Query: 364 VEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLF 423
V+ I E G +TE D IL+ +K L+++ NPAVS N+ KV++AL+K+ LVVQD +
Sbjct: 358 VKGIKKEPGPTITEAIDMILKDRIKFLWVVCTNPAVSLPNLEKVKRALEKV-FLVVQDAY 416
Query: 424 LTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDL 483
T FA+ ILPAA EKEG S+R + + + +P GE+KPDW I + L +++
Sbjct: 417 WNDTCEFANLILPAAQLGEKEGVMTGSDRTVTFCERFSEPFGESKPDWLIFTELARKMGA 476
Query: 484 PG-FPYEKVEDITEEYFK----MFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKA 538
FPY ++I EE+ +++ +S E L G Y+ L +F T GKA
Sbjct: 477 EELFPYSSPKEIFEEFKASTKGRLCDMSNLSYENLPARWGKRWLYEDL---KFPTESGKA 533
Query: 539 RLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAK 598
R + E E IL T R+ ++++T T +SP L+K P V ++ DA+
Sbjct: 534 RFHPARVDVAAE----EGMFILLTGRLKNNWHTMTRTGKSPELLKGEIPPFVIMNPRDAE 589
Query: 599 KYGIKDGDLVKVETRRGSIVLKAKISKVKEGVIVVPFHFDA------NILTNDALNK-AG 651
+ GI++G+ V + + I + VK G I PF + + N+LT+D + +
Sbjct: 590 ELGIEEGEEVILSAKGKEITRVVRFGNVKRGHIFAPFGYPSEYGEPTNLLTSDRTDPYSK 649
Query: 652 TPELKYSSARI 662
P+LKYS +
Sbjct: 650 EPDLKYSGVDV 660
>pir||S18213 formate dehydrogenase (EC 1.2.1.2) chain A - Wolinella succinogenes
>gi|48507|emb|CAA37989.1| (X54057) formate dehydrogenase
[Wolinella succinogenes]
Length = 939
Score = 309 bits (782), Expect = 9e-83
Identities = 179/504 (35%), Positives = 275/504 (54%), Gaps = 32/504 (6%)
Query: 8 IRVVCPYCGFGCNLL---IDPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPL 63
++ +C YC GC ++ +D ++ + + P ++G C KG ++ S+ RLRYP+
Sbjct: 57 VKTICTYCSVGCGIIAEVVDGVWVRQEVAQDHPISQGGHCCKGADMIDKARSETRLRYPI 116
Query: 64 KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGT 123
+KVG + + WD A+ +IA +L+++ ++YGP+++ FI SK S E++Y +K A GT
Sbjct: 117 EKVGGKWRKTSWDSAMDKIAKQLQDLTQKYGPDSVMFIGGSKCSIEQSYYFRKFAAFFGT 176
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NN+D AR+CH +V + TLG G TN +D+ + KAI I G NPA HPV M +IL
Sbjct: 177 NNLDTIARICHAPTVAGVSNTLGYGGMTNHLADMMHSKAIFIIGGNPAVNHPVGMVHILR 236
Query: 184 AKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTV 243
AK GAKIIV+D + T AD+ + + GTD+ ++ I+ GL DKEF+R R
Sbjct: 237 AKEAGAKIIVVDPHFSRTATKADHYVRLRNGTDVAFMYGMIRHIVKNGLEDKEFIRQRLF 296
Query: 244 GFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVI 303
G+ E+ ++YTPE E+VTG+ A+ + E+ FAKA +++WGMGLTQH +G N
Sbjct: 297 GYEEILKECEQYTPEVVEEVTGVPAQQLIEITEIFAKAKPASLIWGMGLTQHTTGTSNTR 356
Query: 304 AVIDMALLLGYVGDK-GGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLW 362
+ ++LG +G + GG +RG +NVQGA MG L++ LPGY L D +W
Sbjct: 357 LAPILQMILGNIGKRGGGTNVLRGHDNVQGATDMGNLADSLPGYYGL-DKNAWNHFCGIW 415
Query: 363 GVE-----------DIPTERGLYLTELWDAILEGE---------VKALYIMGENPAVSEA 402
V+ D+ ++G ++ + E E +++L ++G + + A
Sbjct: 416 KVDFEAMQKRFKTPDMMHKKGFSVSTWRYGVTEEENIPHNAGTKLRSLIVVGSGIS-TIA 474
Query: 403 NVLKVRKALQKLELLVVQDLFLTRTARFAH-----YILPAAAFCEKEGSYMNSERRIQWS 457
V + AL K++L+V D + A + YILPAA E G + R QW
Sbjct: 475 RVDTTKDALDKMDLVVFFDPYFNDAAALTNRKDNLYILPAATQMETSGRVAATNRSYQWR 534
Query: 458 FKVCDPPGEAKPDWEILSLLGKEL 481
V P E +PD EIL L K L
Sbjct: 535 SMVMKPLFECRPDEEILFDLAKRL 558
>emb|CAB73932.1| (AL139078) putative formate dehydrogenase large subunit
(Selenocysteine containing) [Campylobacter jejuni]
Length = 934
Score = 307 bits (778), Expect = 3e-82
Identities = 205/597 (34%), Positives = 310/597 (51%), Gaps = 50/597 (8%)
Query: 4 GDRVIRVVCPYCGFGCNLLIDPKT---LKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRL 59
G + ++ VC C GC ++ + + ++ + + P + G C KG ++ V S RL
Sbjct: 49 GSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRL 108
Query: 60 RYPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR 119
+YP+KK ++ RI ++ A+ EI KL ++ P ++ F+ S+K++NE+ Y ++K A
Sbjct: 109 KYPMKKENGEWKRISYEQALSEIGEKLAAYRKE-NPESVMFLGSAKLNNEQAYYIRKFAA 167
Query: 120 LLGTNNIDNCARLC-HEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
GTNN+D+ AR+ H A+V + T G G TN D++ K I+I G NPA HPV
Sbjct: 168 FFGTNNVDHQARI-UHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGF 226
Query: 179 DYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFV 238
+ L AK KGAK+IV+D R T + AD I PGTDI ++ +I EGL D +++
Sbjct: 227 RHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYL 286
Query: 239 RSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSG 298
R G +++ K+T E E VTGI +L+ ++ E AK ++W MGLTQH G
Sbjct: 287 DERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVG 346
Query: 299 VENVIAVIDMALLLGYVGD-KGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKR 357
N + ++LG +G GG+ +RG +NVQGA+ M LSE LPGY PL ++T+R
Sbjct: 347 TSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWR-Y 405
Query: 358 VASLWGVE-----------DIPTERGLYLTELWDAILEGE------------VKALYIMG 394
A +WGV+ D + GL L W A L G+ +KAL +MG
Sbjct: 406 YAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMG 465
Query: 395 ENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAH-----YILPAAAFCEKEGSYMN 449
N S A +KV++ L+ LELLV+ D F+ A Y+LPAA E GS
Sbjct: 466 -NGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTA 524
Query: 450 SERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFK-MFPELAGI 508
+ R QW FKV DP E+ D EIL L K+L GF + + + +E + ++PE A
Sbjct: 525 TNRSGQWRFKVVDPLYESMEDQEILFELAKKL---GFYEDFTKTLRDEKGEIVWPENATR 581
Query: 509 SVEELKNS---NGIIIPYKRLHTIRFQ-----TPDGKARLIAVEQIMPWEQPNGEYP 557
+ + S NG + HT+ + T +GK + +PW + ++P
Sbjct: 582 EIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHP 638
>gb|AAA25100.2| (L06800) nitrate reductase large subunit [Klebsiella oxytoca]
Length = 866
Score = 294 bits (745), Expect = 2e-78
Identities = 211/690 (30%), Positives = 329/690 (47%), Gaps = 46/690 (6%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLK 64
R CPYCG GC ++ +G+ N G+LC KG E V + R+ +P
Sbjct: 5 RTTCPYCGVGCGVIASRAPHGQVSVRGDEQHPANFGRLCVKGAALGETVGLEGRMLFP-- 62
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
D R W A+ S+LREI +R+GP A+AF AS ++ E+ Y K+ + +G
Sbjct: 63 --EVDGERATWPQALAAAGSRLREIIDRHGPQAVAFYASGQLLTEDYYAANKLMKGFIGA 120
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NID +RLC ++V K LGA V Y D+EN +++ G N A HPV+ +
Sbjct: 121 ANIDTNSRLCMSSAVTGYKRALGADVVPCSYEDVENSDLVVLVGSNAAWAHPVLYQRLAQ 180
Query: 184 AKRKGA--KIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
AKR +++VID R T T +AD L + PG+D L L+N I + G +F ++
Sbjct: 181 AKRDNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASGAISDDFNDAQ 240
Query: 242 TVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVEN 301
+ + + + G+ + I + REF A ++ MG+ Q SG +
Sbjct: 241 -----RALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQSASGSDK 295
Query: 302 VIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS 360
A+I++ L G G G G + + GQ N G +G L+ L ++ R R+A
Sbjct: 296 CNAIINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDDLR-RLAR 354
Query: 361 LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
WG E + GL EL+ AI GEVKA++IMG NP VS + V +AL + L+++
Sbjct: 355 FWGSERLAQTPGLTGVELFAAIGRGEVKAVWIMGTNPVVSLPDSHAVSEALARCPLVIIS 414
Query: 421 DLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGK 479
D+ T T RFAH PA A+ EK G+ NSERRI PPGEA+ DW I++ + +
Sbjct: 415 DVVADTDTGRFAHIRFPALAWGEKSGTVTNSERRISRQRAFMPPPGEARADWWIVARVAE 474
Query: 480 ELDL-PGFPYEKVEDITEEYFKM------------FPELAGISVEELKNSNGIIIPYKRL 526
L F ++ ++ E+ + LA +S E + P R
Sbjct: 475 ALGFGSAFAWQHPHEVFSEHAALSGYENDGQRAFDIGGLADLSREAWDALEPVRWPVSRS 534
Query: 527 HTI----RFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLV 582
+ DGK R++ V + YPLIL + R+ ++T T P L+
Sbjct: 535 EAAWSVHKGWHRDGKLRMVPVAPQPTRATTDAFYPLILNSGRIRDQWHTMTRTGAVPRLM 594
Query: 583 KLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHFDANI 641
+ ++EPVV ++ +DA++Y + +G+L +V + +G +V K I + G + VP H++
Sbjct: 595 QHINEPVVEVAPADAQRYHLLEGELARVRSPKGVMVAKVTIGDGQRPGSLFVPMHWNNQF 654
Query: 642 LTNDALNK---------AGTPELKYSSARI 662
+N +G PE K ++ I
Sbjct: 655 ARQGRVNNLLAAVTDPHSGQPESKQTAVAI 684
>emb|CAB69761.1| (AL137187) putative reductase [Streptomyces coelicolor A3(2)]
Length = 819
Score = 263 bits (665), Expect = 5e-69
Identities = 172/524 (32%), Positives = 250/524 (46%), Gaps = 14/524 (2%)
Query: 12 CPYCGFGCNLLIDPK---TLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
CPYC C + + P T++V P NRG LC KG A + RL PL + G
Sbjct: 16 CPYCALQCGMNLTPVEGGTVEVSERTDFPVNRGALCGKGRTAAAVLAPGARLTSPLVRSG 75
Query: 68 SD-FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGTNN 125
V GWD+A+ IA L + RYG +A+ ++NE+ Y L K AR+ LGT+
Sbjct: 76 DGALVPAGWDEALDRIAGNLERTRARYGADALGVFGGGGLTNEKAYALGKFARVVLGTSQ 135
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTN-PYSDLENFKAIMIWGYNPAETHPVVMDYILNA 184
ID R C ++ A G P D+ +++ G NPAET P + Y
Sbjct: 136 IDYNGRFCMSSAAAAGTRAFGLDRGLPFPLEDVPRTGCVILVGSNPAETMPPSLRYFTEL 195
Query: 185 KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVG 244
+ G +IV+D R T T AD L PGTD+ LA +++++++EG D+ +V RT G
Sbjct: 196 RENGGTLIVVDPRRTKTAEQADLHLAPRPGTDLALALGMLHLVVAEGRVDEAYVEERTSG 255
Query: 245 FSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIA 304
+ E + A + PEY E++TG+ +RE R F + ++ G Q G + V A
Sbjct: 256 WEEARAAAMAHWPEYVERITGVSVPELREAVRLFCAPEAAMVLTARGPEQQAKGTDTVGA 315
Query: 305 VIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWG 363
I++ L G G G + GQ N QG G ++ LPGY LTD R+ VA +WG
Sbjct: 316 WINLCLATGRAGRPLSGYGCLTGQGNGQGGREHGQKADQLPGYRKLTDPAARRHVAEVWG 375
Query: 364 VE-DIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDL 422
V+ D G EL DA L +V++L +MG NP VS V L+ L+ L V D+
Sbjct: 376 VDPDALPGPGRSAYELLDA-LGTDVRSLLVMGSNPVVSAPRAAHVEGRLRSLDFLAVCDV 434
Query: 423 FLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEIL----SLLG 478
L+ TA A +LP + E+ G+ + E R+ + PP + D E+L LG
Sbjct: 435 VLSETAELADVVLPVTQWAEETGTTTSLEGRVLLRRRAITPPDGVRGDLEVLHGLAGRLG 494
Query: 479 KELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIP 522
+ P P E E++ + +GI L NG+ P
Sbjct: 495 VQKGFPTDPEEVFEELRRASAGGPADYSGIDYRRLAEENGVFWP 538
Score = 85.0 bits (207), Expect = 2e-15
Identities = 54/147 (36%), Positives = 76/147 (50%), Gaps = 6/147 (4%)
Query: 525 RLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKL 584
RL RF T DG+AR V E+P+ EYP++LTT RV+S Y +G T R L
Sbjct: 671 RLFLDRFATDDGRARFAPVTHRPSAEEPDDEYPVLLTTGRVVSQYQSGAQTRRVAELNAA 730
Query: 585 MSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHFD----A 639
P V + A + G DGD + V +RRG V A+I+ ++ + +PFH+ A
Sbjct: 731 APGPFVELHPRLAARLGAADGDPLAVVSRRGRAVAPARITTGIRPDTVFMPFHWPGEGRA 790
Query: 640 NILTNDALNKAG-TPELKYSSARIRKI 665
N LTN AL+ PE K + R+ +
Sbjct: 791 NTLTNPALDPTSRMPEFKVCAVRVETV 817
>gi|11498802 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483878|pir||B69400
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2649381|gb|AAB90041.1| (AE001021) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 741
Score = 254 bits (643), Expect = 2e-66
Identities = 194/668 (29%), Positives = 322/668 (48%), Gaps = 72/668 (10%)
Query: 3 IGDRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPN---RGKLCPKGLHALEFVLSKDRL 59
+ + V++ C C GC +L+ K+ K+ +G+P+ RG +CPKGL +++ V + RL
Sbjct: 36 MSEHVVKTTCKSCHGGCRVLVKVKSGKIVHIEGDPSSLTRGTMCPKGLASIKEVYNPSRL 95
Query: 60 RYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQ 115
+YPLK+VG ++ RI W +A+ IA K++E E YGP++I + N
Sbjct: 96 KYPLKRVGERGEGEWKRISWKEALDTIAEKMKEYIEEYGPSSI--LIGQGTGRGYNRYTF 153
Query: 116 KIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENF-----KAIMIWG--- 167
+ AR +G+ N+ A C+ + A +T+G + Y D + K I+ WG
Sbjct: 154 RFARSIGSPNVLLPAHFCYAPRLAAFGITVGGRL----YCDYHGWGGEYPKTIVHWGKQL 209
Query: 168 -YNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNV 226
Y A+ V + L A + I++D + T AD L + PGTD LA ++NV
Sbjct: 210 EYTNADGEMAV--WFLRALEEAEHFILVDPKATPVAHRADLWLPVRPGTDAALALGMLNV 267
Query: 227 IISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAI 286
IISE LYDK+FV T GF ++ V++Y+P+ ++T + I+ A FA + G I
Sbjct: 268 IISEELYDKDFVEQWTHGFDRLRERVEEYSPDKVSRITWVPEDKIKLAAEWFATSRPGCI 327
Query: 287 MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGY 346
G L + ++ + A+I + + G + GG+ G + EF
Sbjct: 328 QIGQALEAGNNSIQTLRAIICLMAVTGNIERPGGMVNWVPPET-------GEMEEFALEV 380
Query: 347 VPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGE--VKALYIMGENPAVSEANV 404
P + A + + +P + + + +L GE +K +++ G NP ++ AN
Sbjct: 381 PPPEELPIG---ADRYKLLALPPFAMCHFESVCEDLLNGERRIKMMHLQGTNPVLAYANS 437
Query: 405 LKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSY-MNSERRIQWSFKVCDP 463
V KAL +E + V DL+++ TA++A +LPAA + E + Y M+ + + +P
Sbjct: 438 KDVLKALLNVEFISVVDLYMSPTAKYADIVLPAAHWLETDDIYDMHPRFFVSAIVRAVEP 497
Query: 464 PGEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPY 523
GEA PD I + LGK L P + + V ++ + AGI+ EE K G++
Sbjct: 498 VGEALPDNVIFNELGKRL-APKYWFSDVYEMLNYQLRK----AGITWEEFKEI-GVLART 551
Query: 524 KRLHTIR-----------FQTPDGKARLIAV-------EQIMPWEQPN----------GE 555
+ H + F TP GK L + + + + +PN +
Sbjct: 552 GKEHYYKYKTNYWREGGGFPTPTGKIELYSTILENLNYDPLPHYREPNESPYSTPELSEK 611
Query: 556 YPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRG 615
YPLIL+T + +Y + ++P L +L +PV I A+KYGIKDGD + +ET RG
Sbjct: 612 YPLILSTGGRVPYYFHSQY-RQNPWLRELQPDPVALIHPETAEKYGIKDGDWIWIETPRG 670
Query: 616 SIVLKAKI 623
I +A++
Sbjct: 671 RIRQRARL 678
>dbj|BAA74791.1| (AB017192) nitrate reductase catalytic subunit [Clostridium
perfringens]
Length = 692
Score = 254 bits (641), Expect = 3e-66
Identities = 202/690 (29%), Positives = 332/690 (47%), Gaps = 35/690 (5%)
Query: 8 IRVVCPYCGFGCNLLI---DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPL 63
I+ C YC CNL D K +V P P N+G C KGL+ + + + PL
Sbjct: 4 IQSTCNYCALACNLDFYTEDGKIKRVVPTPHYPVNKGFSCIKGLNLDKQCTKFNGSKKPL 63
Query: 64 KKV-GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
K+ + I W +A ASK+ I+E+YG ++A+I++ ++ EE LL + R
Sbjct: 64 LKMKDGERKAIEWKEAFDLFASKMTAIQEKYGKESVAYISTGQLPTEEMALLGHVGRSYM 123
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
N D RLC ++V A K + G DLE I G NP HP+ +
Sbjct: 124 GINGDGNTRLCMASAVVAYKQSFGFDAPPYTLKDLELSDTIFFIGANPVIAHPIAWGRV- 182
Query: 183 NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT 242
K K AKII ID R++ T +D + I D+ L L NV+I +G +++++ + T
Sbjct: 183 -RKNKDAKIITIDPRKSETAMNSDMWIDIKTKGDLALFYTLANVLIEKGWINQDYINNYT 241
Query: 243 VGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENV 302
GF + K VKKYT E E+ TGI + E+A+ + + W MG+ Q V
Sbjct: 242 EGFEDFKAHVKKYTLEDVEERTGISKMRVLELAKIIHEGKRVSFWWTMGVNQSYEAVRTA 301
Query: 303 IAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASL 361
A+I++AL+ G +G +G G + GQ N G+ M + + L G + RK VA +
Sbjct: 302 QAIINLALITGNMGREGTGANSLTGQCNAMGSR-MFSNTTALYGGGEYNNKERRKVVADI 360
Query: 362 WGVED--IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
G+++ +PT+ L ++ I +GE+K L+++ NP S +N + +KA++ L+ VV
Sbjct: 361 LGMDENMLPTKPTLDYEQIIKGINKGEIKGLWVVCTNPRHSFSNNEEFKKAMKNLDFFVV 420
Query: 420 QDLFL-TRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG 478
QD++ T +++ LP+ +KEG +N+ERR+ V + + D+EIL +G
Sbjct: 421 QDIYEDTDSSKECDLYLPSVPAIKKEGFLINTERRLSALVPVLEKEEDELSDYEILLGIG 480
Query: 479 KELDLPGF--PYEKVED---ITEEYFKMFP-ELAGISVEELKNSNGIIIPYKRLHTI--- 529
+ L + + ED + E K P ++ G+S E L++S GI P ++ +
Sbjct: 481 EALGMGSLLDKWRTPEDAFKLLRECSKGMPCDITGVSYERLRDSKGIQWPCRKGEELESD 540
Query: 530 --------RFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVR-VMSHYNTGEMTMRSPS 580
++ TP GKA+ I + N E+P L T R + ++T T +
Sbjct: 541 ERRLFEDGKYYTPSGKAKFIFEDVTENPNATNEEFPFNLNTGRGTVGQWHTHTRTREIQA 600
Query: 581 LVKLMSEPV-VYISESDAKKYGIKDGDLVKVETRRG--SIVLKAKISKVKEGVIVVPFHF 637
+ ++S+ V I+ DA+K IK+ D V + + G S + +KE + P H+
Sbjct: 601 VTNIVSQKAYVDINRKDAEKLDIKENDEVLIHSSNGHTSKFIARLTDNLKEKTLYAPIHY 660
Query: 638 -DANILTNDALNK-AGTPELKYSSARIRKI 665
+ N+LT + + P K I K+
Sbjct: 661 IETNLLTPSVFDPYSKEPSYKTVQVNIEKV 690
>gb|AAA16399.1| (U00008) yojC [Escherichia coli]
Length = 809
Score = 238 bits (601), Expect = 1e-61
Identities = 210/785 (26%), Positives = 331/785 (41%), Gaps = 133/785 (16%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
C +CG GC +L+ + +V +G+P NRG C KG + + KDRLR PL ++
Sbjct: 27 CRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLRQPLLRMK 86
Query: 68 S-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+ +F I WD A + K + + GP +I S + + E Y K+ +
Sbjct: 87 NGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKA 146
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NNID AR C ++V T G Y D+E A ++WG N AE HP++
Sbjct: 147 GFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWS 206
Query: 180 YILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
I N + + + V+ + + LAD ++ P +D+ + N + N II +++F
Sbjct: 207 RITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDF 266
Query: 238 V---------------------------------RSRTVGFSEVKMAVKKYTPEYAEKVT 264
S + F + K V +YT E ++T
Sbjct: 267 FSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMT 326
Query: 265 GIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLY 322
G+ + ++A+ +A I W MG QH GV V ++ LL G + G G +
Sbjct: 327 GVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPF 386
Query: 323 PMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTELW 379
+ GQ + G A +G + LP + +T+ R W + IP + GL+
Sbjct: 387 SLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQD 446
Query: 380 DAILEGEVKALYIMGENPAVSEANVLKVRKA--LQKLELLVVQDLFLTRTARFAHYILPA 437
A+ +G++ + M N + N+ + R ++V D + T +A A ILP
Sbjct: 447 RALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPT 506
Query: 438 AAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEIL--------------SLLGKELD 482
A + EKEG+Y N+ERR Q+ + PGEAK D W+++ LL K+ +
Sbjct: 507 AMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPE 566
Query: 483 LPGFPYEKVEDITEEYFKMFP--ELAGISVEELKNSNGI--------------------I 520
L G +V T E K FP ELA + + G +
Sbjct: 567 LRGKTLYEVLYATPEVSK-FPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDL 625
Query: 521 IPYKRLHTIR--------------------------------FQTPDGKARLIAVEQIMP 548
P+ H R + PDGKA + A+
Sbjct: 626 APFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPA 685
Query: 549 WEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLV 608
E P+ EY L L+T RV+ H++TG MT R P L + E V++I DAK ++ GD V
Sbjct: 686 AEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKV 745
Query: 609 KVETRRG---SIVLKAKISKVKEGVIVVPFHFDANILTNDALNKAGTP-----ELKYSSA 660
KV +RRG SIV ++ +G++ +PF FDA L N A P + K +
Sbjct: 746 KVVSRRGEVISIVETRGRNRPPQGLVYMPF-FDAAQLVNKLTLDATDPLSKETDFKKCAV 804
Query: 661 RIRKI 665
++ K+
Sbjct: 805 KLEKV 809
>sp|P33937|NAPA_ECOLI PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|7431435|pir||D64990
probable nitrate reductase (EC 1.7.99.4) - Escherichia
coli (strain K-12) >gi|1788534|gb|AAC75266.1|
(AE000309) probable nitrate reductase 3 [Escherichia
coli K12]
Length = 828
Score = 236 bits (595), Expect = 8e-61
Identities = 209/785 (26%), Positives = 330/785 (41%), Gaps = 133/785 (16%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
C +CG GC +L+ + +V +G+P NRG C KG + + KDRL PL ++
Sbjct: 46 CRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMK 105
Query: 68 S-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+ +F I WD A + K + + GP +I S + + E Y K+ +
Sbjct: 106 NGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKA 165
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NNID AR C ++V T G Y D+E A ++WG N AE HP++
Sbjct: 166 GFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWS 225
Query: 180 YILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
I N + + + V+ + + LAD ++ P +D+ + N + N II +++F
Sbjct: 226 RITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDF 285
Query: 238 V---------------------------------RSRTVGFSEVKMAVKKYTPEYAEKVT 264
S + F + K V +YT E ++T
Sbjct: 286 FSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMT 345
Query: 265 GIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLY 322
G+ + ++A+ +A I W MG QH GV V ++ LL G + G G +
Sbjct: 346 GVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPF 405
Query: 323 PMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTELW 379
+ GQ + G A +G + LP + +T+ R W + IP + GL+
Sbjct: 406 SLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQD 465
Query: 380 DAILEGEVKALYIMGENPAVSEANVLKVRKA--LQKLELLVVQDLFLTRTARFAHYILPA 437
A+ +G++ + M N + N+ + R ++V D + T +A A ILP
Sbjct: 466 RALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPT 525
Query: 438 AAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEIL--------------SLLGKELD 482
A + EKEG+Y N+ERR Q+ + PGEAK D W+++ LL K+ +
Sbjct: 526 AMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPE 585
Query: 483 LPGFPYEKVEDITEEYFKMFP--ELAGISVEELKNSNGI--------------------I 520
L G +V T E K FP ELA + + G +
Sbjct: 586 LRGKTLYEVLYATPEVSK-FPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDL 644
Query: 521 IPYKRLHTIR--------------------------------FQTPDGKARLIAVEQIMP 548
P+ H R + PDGKA + A+
Sbjct: 645 APFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPA 704
Query: 549 WEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLV 608
E P+ EY L L+T RV+ H++TG MT R P L + E V++I DAK ++ GD V
Sbjct: 705 AEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKV 764
Query: 609 KVETRRG---SIVLKAKISKVKEGVIVVPFHFDANILTNDALNKAGTP-----ELKYSSA 660
KV +RRG SIV ++ +G++ +PF FDA L N A P + K +
Sbjct: 765 KVVSRRGEVISIVETRGRNRPPQGLVYMPF-FDAAQLVNKLTLDATDPLSKETDFKKCAV 823
Query: 661 RIRKI 665
++ K+
Sbjct: 824 KLEKV 828
>pir||D82430 periplasmic nitrate reductase VCA0678 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658095|gb|AAF96578.1|
(AE004397) periplasmic nitrate reductase [Vibrio
cholerae]
Length = 829
Score = 235 bits (594), Expect = 1e-60
Identities = 191/766 (24%), Positives = 330/766 (42%), Gaps = 126/766 (16%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLKKV- 66
C +CG GC++L+ + +V +G+P N+G C KG + + +DRL+ PL ++
Sbjct: 48 CRFCGTGCSVLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMK 107
Query: 67 ------GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+F + WD A +A K + + GP ++ S + + E Y K+ +
Sbjct: 108 DGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKA 167
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NNID AR C ++V T G Y D E+ A ++WG N AE HPV+
Sbjct: 168 GFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWT 227
Query: 180 YILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
I + + K+ V+ + LAD+ + +P +D+ +AN + N II + +F
Sbjct: 228 RITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDF 287
Query: 238 VRSRT---------------------------------VGFSEVKMAVKKYTPEYAEKVT 264
V T + F E K +V YT E A +++
Sbjct: 288 VNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEIS 347
Query: 265 GIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL-Y 322
G+ + +A+++A + + +W MG+ QH GV V ++ LL G + G +
Sbjct: 348 GVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPF 407
Query: 323 PMRGQNNVQGAAY-MGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTELW 379
+ GQ + G A +G + LP + + + R +W + + IP + G + +
Sbjct: 408 SLTGQPSACGTAREVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAVQQD 467
Query: 380 DAILEGEVKALYIMGENPAVSEANVLKVRKALQKL--ELLVVQDLFLTRTARFAHYILPA 437
+ +G + ++ N + N+ + R + +VV D + T TA+ A +LP
Sbjct: 468 RMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTVTAQAADLVLPT 527
Query: 438 AAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEILS--------------------- 475
A + EKEG+Y N+ERR Q ++ GE+ D W+++
Sbjct: 528 AMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELLAKAPQ 587
Query: 476 --------LLGKELDLPGFPYEKVEDITEE--YFKMFPELAGISVEELKNSNGI---IIP 522
+L K + FP + ++ ++ +F + + G+ E + G + P
Sbjct: 588 YRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQ-KGLFEEYAEFGRGHGHDLAP 646
Query: 523 YKRLHTIR--------------------------------FQTPDGKARLIAVEQIMPWE 550
Y H +R + PDGKA +I+ P E
Sbjct: 647 YDVYHQVRGLRWPVVDGKETKWRFKEGSDPYAKAGSGWDFYGKPDGKAWIISSPYEAPPE 706
Query: 551 QPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKV 610
PN EY L L T RV+ H++TG MT R P L K + + + ++ DA+ G++ GD V +
Sbjct: 707 MPNEEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLI 766
Query: 611 ETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKAGTP 653
RG + ++ + +K +G++ VPF FDA IL N + A P
Sbjct: 767 SNSRGEVRVRVETRGRNKPPKGLVFVPF-FDARILVNKLILDATDP 811
>sp|P46448|FDXG_HAEIN FORMATE DEHYDROGENASE MAJOR SUBUNIT (FORMATE DEHYDROGENASE ALPHA
SUBUNIT) (FDH ALPHA SUBUNIT)
Length = 1028
Score = 229 bits (579), Expect = 6e-59
Identities = 194/684 (28%), Positives = 298/684 (43%), Gaps = 174/684 (25%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPY------------------KGEPN----RGKLCPKG 46
R C YC C +L+ KPY +G+P+ RG LCPKG
Sbjct: 47 RNTCTYCAVSCGMLLYSTG---KPYNSLSSHTGTNTRSKLFHIEGDPDHPVSRGALCPKG 103
Query: 47 LHALEFVLSKDRLRYPLKKV-GSD-FVRIGWDDAIREIASKLREIKE------------- 91
+L++V S+ R YP + GSD + RI W DAI+ IA +++ ++
Sbjct: 104 AGSLDYVNSESRSLYPQYRAPGSDKWERISWKDAIKRIARLMKDDRDANFVEKDSNGKTV 163
Query: 92 -RYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQ 150
R+ I + +S +SNE L QK R+LG + N A CH +V +L + G G
Sbjct: 164 NRWATTGI--MTASAMSNEAALLTQKWIRMLGMVPVCNQANTCHGPTVASLAPSFGRGAM 221
Query: 151 TNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLM 210
TN + D++N I++ G NPAE HPV + + AK+ GAKIIVID R T +AD
Sbjct: 222 TNNWVDIKNANLIIVQGGNPAEAHPVGFRWAIEAKKNGAKIIVIDPRFNRTASVADLHAP 281
Query: 211 INPGTDITLANALMNVIISEGLYDKEFVRSRT-----------------VGFSE------ 247
I G+DIT ++ ++ E+V+ T VG++E
Sbjct: 282 IRSGSDITFLMGVIRYLLETNQIQHEYVKHYTNASFLIDEGFKFEDGLFVGYNEEKRNYD 341
Query: 248 -----------------------------VKMAVKKYTPEYAEKVTGIEAKLIREVAREF 278
+K V +YTPE E++TG++ KL ++ E
Sbjct: 342 KSKWNYQFDENGHAKRDMTLQHPRCVINILKEHVSRYTPEMVERITGVKQKLFLQICEEI 401
Query: 279 AKAG----SGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGA 333
K + ++ +G T+H G +N+ ++ + LLLG +G GG+ +RG +NVQG
Sbjct: 402 GKTSVPNKTMTHLYALGFTEHSIGTQNIRSMAIIQLLLGNMGMPGGGINALRGHSNVQGT 461
Query: 334 AYMGALSEFLPGYVPL---TDSTFRKRVASL----------------------------- 361
MG L LPGY+ L D+++ + + ++
Sbjct: 462 TDMGLLPMSLPGYMRLPNDKDTSYDQYINAITPKDIVPNQVNYYRHTSKFFVSMMKTFYG 521
Query: 362 --------WGVEDIPTERGLY--LTELWDAILEGEVKALYIMGENPAVSEANVLKVRKAL 411
WG + +P LY +T + + EG++ + G N S N K +
Sbjct: 522 DNATKENGWGFDFLPKADRLYDPITHV-KLMNEGKLHGWILQGFNVLNSLPNKNKTLSGM 580
Query: 412 QKLELLVVQDLFLTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRI 454
KL+ LVV D T ++ F + LP F E+EGS +NS R
Sbjct: 581 SKLKYLVVMDPLQTESSEFWRNFGESNNVNPAEIQTEVFRLPTTCFAEEEGSIVNSGRWT 640
Query: 455 QWSFKVCDPPGEAKPDWEILSLLGKEL-----DLPGFPYEKVEDITEEY--------FKM 501
QW +K CD PGEA PD +ILS+L +E+ G E E +T Y ++
Sbjct: 641 QWHWKGCDQPGEALPDVDILSMLREEMHELYKKEGGQGIESFEAMTWNYAQPHSPSAVEL 700
Query: 502 FPELAGISVEELKNSNGIIIPYKR 525
EL G ++E+L + NG ++ YK+
Sbjct: 701 AKELNGYALEDLYDPNGNLM-YKK 723
>sp|Q56350|NAPA_PARDT PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|1086107|pir||S50163
nitrate reductase (EC 1.7.99.4) large chain precursor,
periplasmic - Thiosphaera pantotropha
>gi|600093|emb|CAA85346.1| (Z36773) periplasmic nitrate
reductase large subunit [Paracoccus denitrificans]
Length = 831
Score = 226 bits (571), Expect = 5e-58
Identities = 202/769 (26%), Positives = 327/769 (42%), Gaps = 129/769 (16%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKG----EPNRGKLCPKGLHALEFVLSKDRLRYPL--KK 65
C +CG GC +++ K +V G E NRG C KG + + DRL PL KK
Sbjct: 48 CRFCGTGCGVMVGVKEGRVVATHGDLLAEVNRGLNCVKGYFLSKIMYGADRLTQPLLRKK 107
Query: 66 VG-----SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
G +F + W++A +A++ + + GP A+ S + + E Y K+ R
Sbjct: 108 DGVYAKDGEFTPVSWEEAFDTMAAQAKRVLRDKGPTALGMFGSGQWTIFEGYAATKLMRA 167
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NN+D AR C ++ +A T G Y D E A ++WG N AE HP++
Sbjct: 168 GFRSNNLDPNARHCMASAAYAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWT 227
Query: 180 YILNAKRKGAKIIVIDVRETTTMR---LADYKLMINPGTDITLANALMNVIISEGLYDKE 236
+ + +R G + + V T T R LAD ++ PGTD+ + N + N II G +++
Sbjct: 228 RVAD-RRLGHPHVKVAVLSTFTHRSSDLADIPIVFKPGTDLAILNYIANHIIQTGRVNRD 286
Query: 237 FVRSRTV----------------------------------GFSEVKMAVKKYTPEYAEK 262
FV T F E V +YT + +
Sbjct: 287 FVDRHTTFVAGATGIGYGLRDDDPREMAARTAEDPAATTPSTFEEFAELVSEYTLDKVSE 346
Query: 263 VTGIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL 321
++G+E + ++A +A + +W MG QHV GV V ++ LL G + + G
Sbjct: 347 LSGVEPAFLEQLAELYADPDRKVMSLWTMGFNQHVRGVWANQMVYNLHLLTGKISEPGNS 406
Query: 322 -YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTE 377
+ + GQ + G A +G LP + +T+ R+ +W + IP + GL+
Sbjct: 407 PFSLTGQASACGTARQVGTFRHRLPSDMTVTNPERRQDAEEIWRIPHGVIPEQPGLHAVA 466
Query: 378 LWDAILEGEVKALYI-MGENPAVSEANVLKVRKALQKLE-LLVVQDLFLTRTARFAHYIL 435
A+ +G + +I + N S N + + + +VV D + T TA A IL
Sbjct: 467 QDRALHDGTLNFYWIQVNNNLQASPNNDGEAWPGYRNPDNFIVVSDAYPTVTALAADLIL 526
Query: 436 PAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEILSL--------LGKELDLPGF 486
PAA + EKEG+Y N+ERR ++ + PGEA+ D W+++ + E L
Sbjct: 527 PAAMWVEKEGAYGNAERRTHVWHQLVEAPGEARSDLWQMMEFSTRFTTDEVWPEEILAAN 586
Query: 487 PYEKVEDITEEYFKM-------FPELAGISVEELKNSNGIII------------------ 521
P + + + + F+ EL ++ N+ G +
Sbjct: 587 PNYRGQSLFDVLFRNGSVDRFDLSELNPVTPTAESNAFGFYVQKGLFEEYAPFGRGHGHD 646
Query: 522 --PYKRLHTI---RFQTPDGK-----------------------------ARLIAVEQIM 547
PY H + R+ DGK AR+IAV
Sbjct: 647 LAPYDTYHEVRGLRWPVVDGKETLWRYREGLDPYVEPGAGVQFYGNPDGKARIIAVPYEP 706
Query: 548 PWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDL 607
P E P+ EY + L T RV+ H+++G MTMR P L + +++ DA+ G G
Sbjct: 707 PAEPPDEEYNIWLVTGRVLEHWHSGSMTMRVPELYRAFPGARCFMNPEDARDMGFNQGAE 766
Query: 608 VKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKAGTP 653
V++ +RRG I + + +++ GV+ VP+ FDA+ L N A P
Sbjct: 767 VRIVSRRGEIRSRVETRGRNRMPRGVVFVPW-FDASQLINKVTLDATDP 814
>sp|P32176|FDOG_ECOLI FORMATE DEHYDROGENASE-O, MAJOR SUBUNIT (FORMATE DEHYDROGENASE-O
ALPHA SUBUNIT) (FDH-Z ALPHA SUBUNIT) (AEROBIC FORMATE
DEHYDROGENASE MAJOR SUBUNIT) >gi|7427710|pir||S40838
formate dehydrogenase (EC 1.2.1.2) O (aerobic) alpha
chain - Escherichia coli
Length = 1016
Score = 225 bits (567), Expect = 1e-57
Identities = 178/611 (29%), Positives = 269/611 (43%), Gaps = 141/611 (23%)
Query: 6 RVIRVVCPYCGFGCNLLI-----DPKTLKVKPY--KGEP----NRGKLCPKGLHALEFVL 54
R R C YC GC LL+ K K + +G+P NRG LCPKG ++F+
Sbjct: 44 RETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIH 103
Query: 55 SKDRLRYP-LKKVGSD-FVRIGWDDAIREIASKLREIKER--YGPNA----------IAF 100
S+ RL++P + GSD + +I W++A IA ++E ++ NA
Sbjct: 104 SESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGM 163
Query: 101 IASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENF 160
+ +S SNE YL QK +R LG +DN AR+CH +V +L T G G TN + D++N
Sbjct: 164 LCASASSNETGYLTQKFSRALGMLAVDNQARVCHGPTVASLAPTFGRGAMTNHWVDIKNA 223
Query: 161 KAIMIWGYNPAETHPVVMDYILNAK-RKGAKIIVIDVRETTTMRLADYKLMINPGTDITL 219
+++ G N AE HPV + + AK GAK+IVID R T T +ADY I GTDI
Sbjct: 224 NLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIRSGTDIAF 283
Query: 220 ANALMNVIISEGLYDKEFVRSRT---------VGFSE----------------------- 247
+ ++ +++ +++E+ + T GF +
Sbjct: 284 LSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYELD 343
Query: 248 --------------------VKMAVKKYTPEYAEKVTGIE----AKLIREVAREFAKAGS 283
+K V +YTP+ E + G K+ +A A +
Sbjct: 344 ENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDKT 403
Query: 284 GAIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEF 342
+ ++ +G TQH G +N+ + + LLLG +G GG+ +RG +N+QG +G LS+
Sbjct: 404 ASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSQS 463
Query: 343 LPGYVPL-----TD---------------------STFRKRVASL--------------W 362
LPGY+ L TD + K S+ W
Sbjct: 464 LPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSW 523
Query: 363 GVEDIPT-ERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
G + +P ++G + + ++ + EG+V G NP S N KV L KL+ LV D
Sbjct: 524 GFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTID 583
Query: 422 LFLTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRIQWSFKVCDPP 464
T T+ F + LP+ F E+ GS +NS R +QW +K D P
Sbjct: 584 PLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADAP 643
Query: 465 GEAKPDWEILS 475
G A D EILS
Sbjct: 644 GIALTDGEILS 654
>emb|CAA38512.1| (X54696) formate dehydrogenase H [Enterobacter aerogenes]
Length = 241
Score = 224 bits (565), Expect = 2e-57
Identities = 112/241 (46%), Positives = 160/241 (65%), Gaps = 1/241 (0%)
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAK 185
+D CAR+ H SV L ++G G +N ++++N + I+GYNPA++HP+V ++++NAK
Sbjct: 1 VDCCARVXHGPSVAGLHQSVGNGAMSNAITEIDNTDLVFIFGYNPADSHPIVANHVINAK 60
Query: 186 RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGF 245
R GAKIIV D R+ T R+AD + + G++I L NA+ +VII E LYDK FV SR+ GF
Sbjct: 61 RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAIGHVIIEEDLYDKSFVASRSEGF 120
Query: 246 SEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAV 305
E + V+ YTPE E++TG+ A+ IR AR +A A S AI+WGMG+TQ GVE V ++
Sbjct: 121 EEYRKIVEGYTPESVEEITGVSAQEIRACARMYASAKSAAILWGMGVTQFYQGVETVRSL 180
Query: 306 IDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGV 364
+A+L G +G G+ P+RGQNNVQGA MGAL + PGY + R++ A WGV
Sbjct: 181 TSLAILTGNLGKPSVGVNPVRGQNNVQGACDMGALPDTYPGYQYVKFPENREKFARAWGV 240
Query: 365 E 365
+
Sbjct: 241 D 241
>pir||D75123 probable formate dehydrogenase PAB0532 - Pyrococcus abyssi (strain
Orsay) >gi|5458212|emb|CAB49701.1| (AJ248285) PUTATIVE
FORMATE DEHYDROGENASE [Pyrococcus abyssi]
Length = 637
Score = 223 bits (562), Expect = 6e-57
Identities = 203/640 (31%), Positives = 289/640 (44%), Gaps = 85/640 (13%)
Query: 34 KGEPN----RGKLCPKGLHALEFVLSKDRLRYPLKKVGSDFVRIGWDDAIREIASKLREI 89
KG P RG LCPKG + SKDRL+ PL K G +F WD AI +A KL+E+
Sbjct: 27 KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEM 86
Query: 90 KERYGPNAIAFIASSKVSNEENYLL-QKIARLLGTNNIDNCARLCHEASVHALKMTLGAG 148
+ YG ++ + NY ++ L + ID +C A ALK G
Sbjct: 87 IKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDG--GICDRAGQEALKDIYGTA 144
Query: 149 VQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYK 208
V +P L+ K I+ WG N T+ + + AKR +I +DV T T + +D
Sbjct: 145 VGVDP-EKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNLEIWTVDVVRTETAKRSDKF 200
Query: 209 LMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEA 268
+ P TD+ A + V+I E LYD++FVR GF E K V K + Y + TG+E
Sbjct: 201 FQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEV 260
Query: 269 KLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQN 328
+ IRE AREFA+ G I G G + ++G E V A+ + L+G+ G +Y M+
Sbjct: 261 EEIREFAREFAEK-KGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--RFGFIYDMK--- 314
Query: 329 NVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVK 388
T K A + P E + EL +AI +G VK
Sbjct: 315 ------------------------TIDKSYAEAKFLRTKP-ELRIPQMELTEAIEDGRVK 349
Query: 389 ALYIMGENPAVSEANVLKVRKALQKLELLVV-QDLFLTRTARFAHYILPAAAFCEK---E 444
LYI NP S N ++RKAL+K ++ VV D+FLT TA F+ +LPA F E+
Sbjct: 350 FLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIV 409
Query: 445 GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPE 504
SY + R + + V PG K + E+ L+ K L + PY D EE + E
Sbjct: 410 DSYYH--RYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKN-PYLYESD--EEVIRKVLE 462
Query: 505 LAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQP-------NGEYP 557
IS EELK + IP ++ TP GK + + P G+YP
Sbjct: 463 ANRISFEELKKKGFVKIPEGER---KWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYP 519
Query: 558 LILTT----VRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETR 613
L L + + V S Y+ + S +Y++ DA + GIKDGD V V
Sbjct: 520 LRLLSPTYRMTVTSQYHNTHGIIDSN----------LYMNPKDAAERGIKDGDEVIVFNE 569
Query: 614 RGSIVLKAKISK-VKEGVIVVPFHF-------DANILTND 645
G I K K+++ V GV+++ F + N LT D
Sbjct: 570 NGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLTTD 609
>emb|CAB71267.1| (AL138598) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 776
Score = 221 bits (558), Expect = 2e-56
Identities = 154/499 (30%), Positives = 245/499 (48%), Gaps = 57/499 (11%)
Query: 5 DRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPN----RGKLCPKGLHALEFVLSKDRLR 60
D+ + C +C C L +D K +V +GE + +G++C K + V + +RL
Sbjct: 4 DKTVATACQFCNSNCRLNVDLKAGRVLAVRGEDSDPVQQGQVCVKAELMPQLVYNTERLT 63
Query: 61 YPLKKVG-------SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYL 113
PL++V S F + W++A+ IA K +++ + IA + ++ L
Sbjct: 64 RPLRRVSGAKGSPHSKFEAVSWEEALHTIAKKFLALRDAGQAHTIANRTTGRMPRGTGSL 123
Query: 114 LQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYS--------DLENFKAIMI 165
+ ++ +LG+ N + +C++A +AL MT G G TN Y DL + + +
Sbjct: 124 VARMFAMLGSPNNTDVGPVCNDAGGNALAMTFGLGNFTNGYGTDGSTGKDDLGSARHYLF 183
Query: 166 WGYNPAETHPVVMDYILNAKRKG-AKIIVIDVRETTTMRLADYKLMINPGTDITLANALM 224
G N AETHPV DY+L +++ A + V+D R T T AD + P TD+ L A++
Sbjct: 184 LGTNQAETHPVTFDYLLRGRKENNATLTVVDPRLTPTGAAADRWVAPKPHTDLALLLAML 243
Query: 225 NVIISEGLYDKEFVRSRTVGFSEVK--MAVKKYTPEYAEKVTGIEAKLIREVAREFAKAG 282
+ I+ E LYDK FV+ GF E++ +A +YTPE+A KVTG++A +I ++A E+AKA
Sbjct: 244 HHIVQEKLYDKAFVKRWVAGFDELRRHLAKHQYTPEWAAKVTGVKADVITKMAVEYAKAK 303
Query: 283 SGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEF 342
AI G++ + + +A + G +G GG G +M
Sbjct: 304 PAAIFCNAGISHQLGAFDTYRVATFLAAVTGNIGQPGG-----------GCNFM---HNT 349
Query: 343 LPG--YVPLTDSTFRKRVASL-----WGVEDIPTERGLYLTELWDAILEGEVKALYIMGE 395
PG +P D+ +R +L + E I T+ L +A+ G
Sbjct: 350 WPGDLQLPPLDADLPERREALPVGPDYFAESILTDNPYRL------------RAVVTQG- 396
Query: 396 NPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYM-NSERRI 454
NP VS AN KV+KA ++L+ V LF+ A +A ILP + E EG YM +R I
Sbjct: 397 NPLVSSANTTKVKKAFEQLDFYVYTGLFMEEAAYYADIILPVCSGLEMEGVYMRRDDRAI 456
Query: 455 QWSFKVCDPPGEAKPDWEI 473
+W + D GE++PDWEI
Sbjct: 457 RWQDQAVDRVGESRPDWEI 475
>dbj|BAB06249.1| (AP001515) formate dehydrogenase alpha chain [Bacillus halodurans]
Length = 782
Score = 218 bits (549), Expect = 2e-55
Identities = 181/627 (28%), Positives = 295/627 (46%), Gaps = 74/627 (11%)
Query: 58 RLRYPLKKVGSD--FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLL 114
R+ YPL + + F RI WDDA+ IA+K++ I P +AF +++ ++NE Y
Sbjct: 123 RIPYPLSRKPGEKRFTRISWDDALNRIAAKIKAID----PKQLAFYLTARGITNEVYYTA 178
Query: 115 QKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETH 174
K+AR LGTNNIDN +R+CH S ALK +LG G + Y D ++ WG A
Sbjct: 179 AKVARFLGTNNIDNASRICHSPSKTALKRSLGIGASSCNYQDWIGTDVLVFWGSVAANNQ 238
Query: 175 PVVMDYILNAKRKGAKIIVIDVRETTTM----------------RLADYKLMINPGTDIT 218
PV Y+ AK+ G KII+I+ M ++ D +N G DI
Sbjct: 239 PVSTKYMYAAKKAGTKIIMINPYREPAMENYWIPSIPESALFGTQIVDDVFQVNIGGDIA 298
Query: 219 LANALMNVIIS------EGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIR 272
N +M D F+ + T GF+E+K V++ K G+ + I
Sbjct: 299 FMNGVMKHWFEMEKEQPGSAIDHAFIANHTNGFAELKEHVEQLNWNDIVKSAGLSKERIL 358
Query: 273 EVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQ 331
E A+ A + SG +W MGLTQH +N+ V ++ALL G++G K G+ P+RG + VQ
Sbjct: 359 EFAKLLANSRSGVFIWSMGLTQHRFATDNISQVANLALLQGFIGRKHCGVMPIRGHSGVQ 418
Query: 332 GAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAIL-----EGE 386
G+ MGA LPG + +KR+ ++WG IP +G + ++ + +L E +
Sbjct: 419 GSGEMGADPFVLPG--GDFEPEHKKRIEAIWGFH-IPDWQGDTVGQMLENVLLPDDHERK 475
Query: 387 VKALYIMGENPAVSEANVLKVRKALQKLELLVVQD-LFLTRT---ARFAHYILPAAAFCE 442
V+ Y G N + + +++ L+ +EL V QD +F T T A+ +LPA E
Sbjct: 476 VRLFYTSGGNFLETMPDPAFIQRVLENVELRVHQDIIFNTSTLVDAKEEVIVLPAMTRYE 535
Query: 443 KE--GSYMNSERRIQWSFKVCDPP-GEAKPDWEILSLLGKELDLPG---FPYEKVEDITE 496
+ G+ ++ER + +S ++ P EA+ +W+I L K +D ++ + I +
Sbjct: 536 QPGGGTSTSTERMVYFSPEIKGPRIEEARAEWDIYVELAKRVDPERAHLIDFQTAQQIRD 595
Query: 497 EYFKMFPELAGISVEELKNSNGIIIPYKRLHTIR---FQTPDGKARLIAVEQIMPWEQPN 553
E P GI + LKN G + + TPDG+ L+ ++ + + +
Sbjct: 596 EIAVANPNYDGI--QHLKN-RGDVFQWGGAWLCEGGVCPTPDGRGNLLPID-LPEFRRTE 651
Query: 554 GEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPV-------VYISESDAKKYGIKDGD 606
G + Y T + S+V ++P V ++E+D KK I++G+
Sbjct: 652 GHF------------YVTSRRGKQFNSMVYSETDPFNGADRYDVIMNETDGKKLNIRNGE 699
Query: 607 LVKVETRRGSIVLKAKISKVKEGVIVV 633
+ V + G+ +A + G I V
Sbjct: 700 SIVVYNQYGTFQGRACFGDTQTGNIAV 726
>sp|P24183|FDNG_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT (FORMATE
DEHYDROGENASE-N ALPHA SUBUNIT) (FDH-N ALPHA SUBUNIT)
(ANAEROBIC FORMATE DEHYDROGENASE MAJOR SUBUNIT)
>gi|7427709|pir||JS0628 formate dehydrogenase (EC
1.2.1.2) N (nitrate-inducible) alpha chain - Escherichia
coli
Length = 1015
Score = 215 bits (543), Expect = 9e-55
Identities = 189/671 (28%), Positives = 286/671 (42%), Gaps = 154/671 (22%)
Query: 8 IRVVCPYCGFGCNLLI-----DPKTLKVKPY--KGEPN----RGKLCPKGLHALEFVLSK 56
IR C YC GC LL+ K + Y +G+P+ RG LCPKG L++V S+
Sbjct: 46 IRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSE 105
Query: 57 DRLRYP-LKKVGSD-FVRIGWDDAIREIASKLREI-------KERYGPN-----AIAFIA 102
+RLRYP + GSD + RI W++A IA ++ K G + +
Sbjct: 106 NRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLC 165
Query: 103 SSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKA 162
+S SNE L QK AR LG +DN AR+CH +V +L T G G TN + D++N
Sbjct: 166 ASGASNETGMLTQKFARSLGMLAVDNQARVCHGPTVASLAPTFGRGAMTNHWVDIKNANV 225
Query: 163 IMIWGYNPAETHPVVMDYILNAKRKG-AKIIVIDVRETTTMRLADYKLMINPGTDITLAN 221
+M+ G N AE HPV + + AK A +IV+D R T T +AD I GTDIT +
Sbjct: 226 VMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFLS 285
Query: 222 ALMNVIISEGLYDKEFVRSRT-----------------VGFSEVKMAVKK---------- 254
++ +I + E+V+ T G+ K K
Sbjct: 286 GVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDEN 345
Query: 255 -------------------------YTPEYAEKVTGIE----AKLIREVAREFAKAGSGA 285
YTP+ E + G K+ +A A +
Sbjct: 346 GYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTT 405
Query: 286 IMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLP 344
++ +G TQH G +N+ + + LLLG +G GG+ +RG +N+QG +G LS LP
Sbjct: 406 FLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLP 465
Query: 345 GYVPLTD--------------------------STFRKRVASL--------------WGV 364
GY+ L S + K SL WG
Sbjct: 466 GYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGY 525
Query: 365 EDIPTERGLY-LTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLF 423
+ +P Y + + ++ + EG+V + G NP S + KV L KL+ +VV D
Sbjct: 526 DWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPL 585
Query: 424 LTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGE 466
+T T+ F + LP+ F E++GS NS R +QW +K D PGE
Sbjct: 586 VTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGE 645
Query: 467 AKPDWEILSLL------------GKELD-LPGFPYEKVEDITEEYFKMFPELAGISVEEL 513
A+ D EIL+ + GK ++ L + + + ++ E G ++E+L
Sbjct: 646 ARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDL 705
Query: 514 KNSNGIIIPYK 524
++NG++I K
Sbjct: 706 YDANGVLIAKK 716
>dbj|BAA15989.1| (D90850) Probable nitrate reductase (EC 1.7.99.4). [Escherichia
coli]
Length = 757
Score = 212 bits (535), Expect = 8e-54
Identities = 186/710 (26%), Positives = 293/710 (41%), Gaps = 124/710 (17%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
C +CG GC +L+ + +V +G+P NRG C KG + + KDRL PL ++
Sbjct: 46 CRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMK 105
Query: 68 S-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+ +F I WD A + K + + GP +I S + + E Y K+ +
Sbjct: 106 NGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKA 165
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NNID AR C ++V T G Y D+E A ++WG N AE HP++
Sbjct: 166 GFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWS 225
Query: 180 YILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
I N + + + V+ + + LAD ++ P +D+ + N + N II +++F
Sbjct: 226 RITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDF 285
Query: 238 V---------------------------------RSRTVGFSEVKMAVKKYTPEYAEKVT 264
S + F + K V +YT E ++T
Sbjct: 286 FSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMT 345
Query: 265 GIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLY 322
G+ + ++A+ +A I W MG QH GV V ++ LL G + G G +
Sbjct: 346 GVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPF 405
Query: 323 PMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTELW 379
+ GQ + G A +G + LP + +T+ R W + IP + GL+
Sbjct: 406 SLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQD 465
Query: 380 DAILEGEVKALYIMGENPAVSEANVLKVRKA--LQKLELLVVQDLFLTRTARFAHYILPA 437
A+ +G++ + M N + N+ + R ++V D + T +A A ILP
Sbjct: 466 RALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPT 525
Query: 438 AAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEIL--------------SLLGKELD 482
A + EKEG+Y N+ERR Q+ + PGEAK D W+++ LL K+ +
Sbjct: 526 AMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPE 585
Query: 483 LPGFPYEKVEDITEEYFKMFP--ELAGISVEELKNSNGI--------------------I 520
L G +V T E K FP ELA + + G +
Sbjct: 586 LRGKTLYEVLYATPEVSK-FPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDL 644
Query: 521 IPYKRLHTIR--------------------------------FQTPDGKARLIAVEQIMP 548
P+ H R + PDGKA + A+
Sbjct: 645 APFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPA 704
Query: 549 WEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAK 598
E P+ EY L L+T RV+ H++TG MT R P L + E V++I DAK
Sbjct: 705 AEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAK 754
>gb|AAD13456.1| (AE000464) formate dehydrogenase-O, major subunit [Escherichia coli
K12]
Length = 1016
Score = 212 bits (534), Expect = 1e-53
Identities = 177/612 (28%), Positives = 268/612 (42%), Gaps = 143/612 (23%)
Query: 6 RVIRVVCPYCGFGCNLLI-----DPKTLKVKPY--KGEP----NRGKLCPKGLHALEFVL 54
R R C YC GC LL+ K K + +G+P NRG LCPKG ++F+
Sbjct: 44 RETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIH 103
Query: 55 SKDRLRYP-LKKVGSD-FVRIGWDDAIREIASKLREIKER--YGPNA----------IAF 100
S+ RL++P + GSD + +I W++A IA ++E ++ NA
Sbjct: 104 SESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGM 163
Query: 101 IASSKVSNEENYLLQKIARLLGTNNIDNCARLC-HEASVHALKMTLGAGVQTNPYSDLEN 159
+ +S SNE YL QK +R LG +DN AR+ H +V +L T G G TN + D++N
Sbjct: 164 LCASASSNETGYLTQKFSRALGMLAVDNQARV-UHGPTVASLAPTFGRGAMTNHWVDIKN 222
Query: 160 FKAIMIWGYNPAETHPVVMDYILNAK-RKGAKIIVIDVRETTTMRLADYKLMINPGTDIT 218
+++ G N AE HPV + + AK GAK+IVID R T T +ADY I GTDI
Sbjct: 223 ANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIRSGTDIA 282
Query: 219 LANALMNVIISEGLYDKEFVRSRT---------VGFSE---------------------- 247
+ ++ +++ +++E+ + T GF +
Sbjct: 283 FLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYEL 342
Query: 248 ---------------------VKMAVKKYTPEYAEKVTGIE----AKLIREVAREFAKAG 282
+K V +YTP+ E + G K+ +A A
Sbjct: 343 DENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDK 402
Query: 283 SGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSE 341
+ + ++ +G TQH G +N+ + + LLLG +G GG+ +RG +N+QG +G LS+
Sbjct: 403 TASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSQ 462
Query: 342 FLPGYVPL-----TD---------------------STFRKRVASL-------------- 361
LPGY+ L TD + K S+
Sbjct: 463 SLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENS 522
Query: 362 WGVEDIPT-ERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
WG + +P ++G + + ++ + EG+V G NP S N KV L KL+ LV
Sbjct: 523 WGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTI 582
Query: 421 DLFLTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRIQWSFKVCDP 463
D T T+ F + LP+ F E+ GS +NS R +QW +K D
Sbjct: 583 DPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADA 642
Query: 464 PGEAKPDWEILS 475
PG A D EILS
Sbjct: 643 PGIALTDGEILS 654
>pir||B49847 nitrate reductase (EC 1.7.99.4) nasA - Klebsiella pneumoniae
Length = 861
Score = 211 bits (532), Expect = 2e-53
Identities = 193/698 (27%), Positives = 300/698 (42%), Gaps = 67/698 (9%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLK 64
R CPYCG GC ++ +G+ N G+LC KG E V +DR+ +P
Sbjct: 5 RTTCPYCGVGCGVIASRAPHGQVSVRGDEQHPANFGRLCVKGAALGETVGLEDRMLFP-- 62
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
D R W A + + + G A+ F S ++ E+ Y K+ + +G
Sbjct: 63 --EVDGERATWPQAGGGRFAPAGDYRSARG-QAVRF-TSGQLLTEDYYAANKLMKGFIGA 118
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NID +RLC ++V K V Y D+EN +++ G N A HPV+ +
Sbjct: 119 ANIDTNSRLCMSSAVTGYKRARWGTVVPCSYEDVENSDLVVLVGSNAAWAHPVLYQRLAQ 178
Query: 184 AKRKGA--KIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
AKR +++VID R T T +AD L + PG+D L L+N I + +F ++
Sbjct: 179 AKRDNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASRRISDDFNDAQ 238
Query: 242 TVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVEN 301
+ + + + G+ + I + REF A ++ MG+ Q SG +
Sbjct: 239 -----RALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQSASGSDK 293
Query: 302 VIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS 360
A+I++ L G G G G + + GQ N G +G L+ L ++ R R A
Sbjct: 294 CNAIINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDDLR-RPAR 352
Query: 361 LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
WG E + GL EL+ AI GEVKA++IMG N VS + L+++
Sbjct: 353 FWGSERLAQTGGLTGLELFAAIGRGEVKAVWIMGTNAMVSLPGTSHAVTEPWPVSLVIIS 412
Query: 421 DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
D+ T T RFAH PA A+ EK G+ NSERRI PPGEA+ LS G+
Sbjct: 413 DVADTDTGRFAHIRFPALAWGEKSGTVTNSERRISLQRAFMPPPGEARAAGG-LSPAGRG 471
Query: 481 L--DLPGFPYEKVEDITEEYFKMFPELAG--ISVE-ELKNSNGIIIPYKRLHTIRFQTP- 534
L LPG + T + M +G IS + + + I + R R +
Sbjct: 472 LASALPGSIRTRCSANTPRFQGMKTMASGRLISADWRISAATWIALEPVRWPVSRSEAAW 531
Query: 535 --------DGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSP------- 579
DGK R++ P P TTV ++ N P
Sbjct: 532 SVHKGWHRDGKLRMV----------PVAPQPTRATTVASIALLNADPQQRADPRSMAHHD 581
Query: 580 -----SLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISKVK-EGVIVV 633
L++ ++EPVV + ++ ++Y + +G+L +V + +G +V K I + G + V
Sbjct: 582 PHPAVRLMQHINEPVVEVPPAEPQRYHLLEGELARVRSPKGVMVAKVTIGEANGPGSLFV 641
Query: 634 PFHFDANILTNDALNK---------AGTPELKYSSARI 662
P H++ +N +G PE K ++ I
Sbjct: 642 PMHWNNQFARQGRVNNLLAAVTDPHSGQPESKQTAVAI 679
>dbj|BAA15123.1| (D90788) Formate dehydrogenase, nitrate-inducible, major subunit
(EC 1.2.1.2) (Formate dehydrogenase-N a subunit).
[Escherichia coli] >gi|1742417|dbj|BAA15132.1| (D90789)
Formate dehydrogenase, nitrate-inducible, major subunit
(EC 1.2.1.2) (Formate dehydrogenase-N a subunit).
[Escherichia coli]
Length = 1015
Score = 211 bits (532), Expect = 2e-53
Identities = 188/671 (28%), Positives = 285/671 (42%), Gaps = 154/671 (22%)
Query: 8 IRVVCPYCGFGCNLLI-----DPKTLKVKPY--KGEPN----RGKLCPKGLHALEFVLSK 56
IR C YC GC LL+ K + Y +G+P+ RG LCPKG L++V S+
Sbjct: 46 IRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSE 105
Query: 57 DRLRYP-LKKVGSD-FVRIGWDDAIREIASKLREI-------KERYGPN-----AIAFIA 102
+RLRYP + GSD + RI W++A IA ++ K G + +
Sbjct: 106 NRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLC 165
Query: 103 SSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKA 162
+S SNE L QK AR LG +DN AR+ H +V +L T G G TN + D++N
Sbjct: 166 ASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASLAPTFGRGAMTNHWVDIKNANV 225
Query: 163 IMIWGYNPAETHPVVMDYILNAKRKG-AKIIVIDVRETTTMRLADYKLMINPGTDITLAN 221
+M+ G N AE HPV + + AK A +IV+D R T T +AD I GTDIT +
Sbjct: 226 VMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFLS 285
Query: 222 ALMNVIISEGLYDKEFVRSRT-----------------VGFSEVKMAVKK---------- 254
++ +I + E+V+ T G+ K K
Sbjct: 286 GVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDEN 345
Query: 255 -------------------------YTPEYAEKVTGIE----AKLIREVAREFAKAGSGA 285
YTP+ E + G K+ +A A +
Sbjct: 346 GYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTT 405
Query: 286 IMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFLP 344
++ +G TQH G +N+ + + LLLG +G GG+ +RG +N+QG +G LS LP
Sbjct: 406 FLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLP 465
Query: 345 GYVPLTD--------------------------STFRKRVASL--------------WGV 364
GY+ L S + K SL WG
Sbjct: 466 GYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGY 525
Query: 365 EDIPTERGLY-LTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLF 423
+ +P Y + + ++ + EG+V + G NP S + KV L KL+ +VV D
Sbjct: 526 DWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPL 585
Query: 424 LTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGE 466
+T T+ F + LP+ F E++GS NS R +QW +K D PGE
Sbjct: 586 VTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGE 645
Query: 467 AKPDWEILSLL------------GKELD-LPGFPYEKVEDITEEYFKMFPELAGISVEEL 513
A+ D EIL+ + GK ++ L + + + ++ E G ++E+L
Sbjct: 646 ARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDL 705
Query: 514 KNSNGIIIPYK 524
++NG++I K
Sbjct: 706 YDANGVLIAKK 716
>pir||A71008 hypothetical protein PH1359 - Pyrococcus horikoshii
>gi|3257782|dbj|BAA30465.1| (AP000006) 639aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 639
Score = 210 bits (529), Expect = 4e-53
Identities = 197/664 (29%), Positives = 304/664 (45%), Gaps = 92/664 (13%)
Query: 15 CGFGCNLLIDPKTLKVKPYKGEPN----RGKLCPKGLHALEFVLSKDRLRYPLKKVGS-- 68
C C+++ + K K+ +G P+ +G LCPKG + S +RL+ PL + G
Sbjct: 12 CYDTCSIMSEIKNGKLI-VRGNPDHPITQGFLCPKGALLPRWFHSNERLKSPLVREGKRG 70
Query: 69 --DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLL-QKIARLLGTNN 125
DF + W +A+ I KL+E + YG +I + NY ++ L +
Sbjct: 71 DEDFKEVSWGEALTLIKEKLQETIKEYGSESILVYKYAGDRGIVNYYFPMRLFHYLNAST 130
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAK 185
ID+ +C A ALK G V +P ++ K ++ WG N T+ + + AK
Sbjct: 131 IDS--GICDRAGQEALKDIYGTAVGMDP-EKIKEHKLLVYWGINAFWTN---LHGFMLAK 184
Query: 186 RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGF 245
+ +I +DV T T + +D I P TD+ A + VII E LYDK+FV GF
Sbjct: 185 KGNVEIWTVDVVRTETAKRSDKFFQIRPDTDVLFALGVAKVIIEEELYDKDFVTKNVYGF 244
Query: 246 SEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAV 305
E K V + + Y + TGI+ + I+E AREF + G I G G + ++G E V AV
Sbjct: 245 EEFKNYVTRLSLNYVSQETGIKPERIKEFAREFTEK-RGIIHIGYGFQRSLAGGEAVRAV 303
Query: 306 IDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVE 365
+ +L+G+ G +Y M+ T K A +
Sbjct: 304 AILPVLVGH--KFGFIYDMK---------------------------TIDKSYAEGKFLR 334
Query: 366 DIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV-QDLFL 424
P E + EL I ++K LYI NP S N ++R+AL+K ++ VV D+FL
Sbjct: 335 TKP-ENKIPQMELTKVIESDDIKFLYIYNSNPLASYPNQNRLRRALKKSDVFVVTHDIFL 393
Query: 425 TRTARFAHYILPAAAFCEK---EGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL 481
T TA F+ +LPA F E+ SY + R + + V PG K + E+ L+ K L
Sbjct: 394 TDTALFSDVVLPANTFFERLDIVDSYYH--RYVLLNEPVAKGPG--KSNSEVTRLIAKSL 449
Query: 482 DL-PGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARL 540
+ + YE ED+ + E GIS EELK I +P + ++TP GK
Sbjct: 450 GIRVPYLYESDEDVIRKVL----EANGISFEELKRRGFIKVPEGPRN---WKTPSGKIEF 502
Query: 541 IAVEQIM-------PWEQPNGEYPLILTT----VRVMSHYNTGEMTMRSPSLVKLMSEPV 589
+ + +++ G+YPL L T + + S Y+T + +P
Sbjct: 503 YSQRAVSRGLGPFPEYKKFKGKYPLRLLTPTHRMTITSQYHTTHGII----------DPN 552
Query: 590 VYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHF-------DANI 641
+Y++ DAK GIKDGD V V G ++ K KI++ V +GV+++ F +AN
Sbjct: 553 LYMNPEDAKVRGIKDGDKVGVFNENGRVITKVKITEDVPKGVVILYKAFWPKLLGWNANF 612
Query: 642 LTND 645
LT D
Sbjct: 613 LTTD 616
>pir||G70389 formate dehydrogenase (EC 1.2.1.2) alpha chain - Aquifex aeolicus
Length = 1015
Score = 210 bits (528), Expect = 5e-53
Identities = 176/638 (27%), Positives = 271/638 (41%), Gaps = 149/638 (23%)
Query: 6 RVIRVVCPYCGFGCNLL----------IDPKTLKVKPYKGEP-NRGKLCPKGLHALEFVL 54
+V + +CPYC C +L + + + V+ +P NRG LCPKG +FV
Sbjct: 47 KVTKSICPYCSVSCGILAYSLSDGAMNVKERIIHVEGNPDDPINRGTLCPKGATLRDFVN 106
Query: 55 SKDRLRYPL-KKVGS-DFVRIGWDDAIREIASKLREIKERY------------GPNAIAF 100
+ DRL PL + GS ++ I WD+AI + A +++ ++R ++I +
Sbjct: 107 APDRLTKPLYRPAGSTEWKEISWDEAIEKFARWVKDTRDRTFIHKDKAGRVVNRCDSIVW 166
Query: 101 IASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENF 160
S + NEE +L+ KI LG + + A +CH +V +L T G G TN + D+ N
Sbjct: 167 AVGSPLGNEEGWLMVKIGIALGLSARETQATICHAPTVASLAPTFGRGAMTNNWVDISNS 226
Query: 161 KAIMIWGYNPAETHPVVMDYILNAKRK-GAKIIVIDVRETTTMRLADYKLMINPGTDITL 219
+ + G NPAE HP + + A+ K GAKII ID R T +AD + I PGTDI
Sbjct: 227 DLVFVMGGNPAENHPCGFKWAIKAREKRGAKIICIDPRFNRTAAVADIFVQIRPGTDIAF 286
Query: 220 ANALMNVIISEGLYDKEFVRSRTV---------GFSE----------------------- 247
L+N ++ Y KE+VR T GF +
Sbjct: 287 LGGLINYVLQNEKYQKEYVRLHTTGPFIVREDFGFKDGLFTGYDPKTRSYDTTTWDYEFD 346
Query: 248 -----------------VKMAVKKYTPEYAEKVT----GIEAKLIREVAREFAKAGSG-- 284
V +K++ Y +V G + VA E AK G+
Sbjct: 347 PATGYPKMDPEMKHPRCVLNILKEHYSRYTPEVVSQICGCSKEDFLRVAEEVAKCGAPNK 406
Query: 285 --AIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSE 341
I++ +G T H G + + + LLLG +G GG+ +RG +NVQG + ++
Sbjct: 407 FMTILYALGWTHHSYGTQLIRTACMLQLLLGNIGCPGGGINALRGHSNVQGMTDLAGQNK 466
Query: 342 FLPGYVP------------LTDSTFRKR------------------VASLWGVEDIPTE- 370
LP Y+ L + T RK + +WG P
Sbjct: 467 NLPTYIKPPKPEEQTLAQHLKNRTPRKLHPTSLNYWANYPKFFISFLKCMWGDAATPEND 526
Query: 371 ---RGLYLTE----LWDAILE----GEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
LY E WD ++ G+++ + N + N K +AL+ L+ +VV
Sbjct: 527 FAYDYLYKPEGGYNSWDKFIDDMYKGKIEGVVTAALNFLNNTPNAKKTVRALKNLKWMVV 586
Query: 420 QDLFLTRTARF-------------AHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGE 466
D F+ TA+F +LP A F EKEGS+ NS R ++W +K DPPG+
Sbjct: 587 MDPFMIETAQFWKAEGLDPKEVKTEILVLPTAVFLEKEGSFTNSARWVKWKYKATDPPGD 646
Query: 467 AKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPE 504
AK ++ I G + K+++ E+ FPE
Sbjct: 647 AKDEFWIF----------GRFFMKLKEFYEKEGGAFPE 674
>sp|Q06457|NASA_KLEPN NITRATE REDUCTASE
Length = 861
Score = 208 bits (525), Expect = 1e-52
Identities = 192/698 (27%), Positives = 299/698 (42%), Gaps = 67/698 (9%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLK 64
R CPYCG GC ++ +G+ N G+LC KG E V + R+ +P
Sbjct: 5 RTTCPYCGVGCGVIASRAPHGQVSVRGDEQHPANFGRLCVKGAALGETVGLEGRMLFP-- 62
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGT 123
D R W A + + + G A+ F S ++ E+ Y K+ + +G
Sbjct: 63 --EVDGERATWPQAGGGRFAPAGDYRSARG-QAVRF-TSGQLLTEDYYAANKLMKGFIGA 118
Query: 124 NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN 183
NID +RLC ++V K V Y D+EN +++ G N A HPV+ +
Sbjct: 119 ANIDTNSRLCMSSAVTGYKRARWGTVVPCSYEDVENSDLVVLVGSNAAWAHPVLYQRLAQ 178
Query: 184 AKRKGA--KIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
AKR +++VID R T T +AD L + PG+D L L+N I + +F ++
Sbjct: 179 AKRDNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASRRISDDFNDAQ 238
Query: 242 TVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVEN 301
+ + + + G+ + I + REF A ++ MG+ Q SG +
Sbjct: 239 -----RALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQSASGSDK 293
Query: 302 VIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVAS 360
A+I++ L G G G G + + GQ N G +G L+ L ++ R R A
Sbjct: 294 CNAIINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDDLR-RPAR 352
Query: 361 LWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQ 420
WG E + GL EL+ AI GEVKA++IMG N VS + L+++
Sbjct: 353 FWGSERLAQTGGLTGLELFAAIGRGEVKAVWIMGTNAMVSLPGTSHAVTEPWPVSLVIIS 412
Query: 421 DLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
D+ T T RFAH PA A+ EK G+ NSERRI PPGEA+ LS G+
Sbjct: 413 DVADTDTGRFAHIRFPALAWGEKSGTVTNSERRISLQRAFMPPPGEARAAGG-LSPAGRG 471
Query: 481 L--DLPGFPYEKVEDITEEYFKMFPELAG--ISVE-ELKNSNGIIIPYKRLHTIRFQTP- 534
L LPG + T + M +G IS + + + I + R R +
Sbjct: 472 LASALPGSIRTRCSANTPRFQGMKTMASGRLISADWRISAATWIALEPVRWPVSRSEAAW 531
Query: 535 --------DGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSP------- 579
DGK R++ P P TTV ++ N P
Sbjct: 532 SVHKGWHRDGKLRMV----------PVAPQPTRATTVASIAILNADPQQRADPRSMAHHD 581
Query: 580 -----SLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISKVK-EGVIVV 633
L++ ++EPVV + ++ ++Y + +G+L +V + +G +V K I + G + V
Sbjct: 582 PHPAVRLMQHINEPVVEVPPAEPQRYHLLEGELARVRSPKGVMVAKVTIGEANGPGSLFV 641
Query: 634 PFHFDANILTNDALNK---------AGTPELKYSSARI 662
P H++ +N +G PE K ++ I
Sbjct: 642 PMHWNNQFARQGRVNNLLAAVTDPHSGQPESKQTAVAI 679
>sp|P37519|YYAE_BACSU HYPOTHETICAL 73.9 KD PROTEIN IN RPSF-SPO0J INTERGENIC REGION
>gi|2127016|pir||S66017 formate dehydrogenase homolog
yyaE - Bacillus subtilis >gi|467377|dbj|BAA05223.1|
(D26185) unknown [Bacillus subtilis]
>gi|2636640|emb|CAB16130.1| (Z99124) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 667
Score = 205 bits (516), Expect = 1e-51
Identities = 197/690 (28%), Positives = 300/690 (42%), Gaps = 84/690 (12%)
Query: 6 RVIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNR----GKLCPKGLHALEFVLSKDRLR 60
+V + CP C C L+ KV G+PN GK+C +G S DRLR
Sbjct: 3 KVHQSACPLNCWDSCGFLVTVDDGKVTKVDGDPNHPITEGKICGRGRMLETKTNSPDRLR 62
Query: 61 YPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
YP+KK +FVRI W+ A+ EIA KLREIKE A+ + S +N N LL+ + +
Sbjct: 63 YPMKKQNGEFVRISWEQALDEIADKLREIKETSETTAV--LHSHDYAN--NGLLKALDQR 118
Query: 121 L-----GTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHP 175
G I +C + + A G P D+ N K +++WG N + T+
Sbjct: 119 FFNGYGGVTEI--VGSICWGSGIEAQSWDFGRSYGHGPL-DIYNSKHVVVWGRNVSRTNM 175
Query: 176 VVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDK 235
+ ++ K+KGA I VID T +LAD + + PG D LA A++ V+I G D+
Sbjct: 176 HLYHHLQQVKKKGATITVIDPIFNPTAKLADRYISVKPGMDGWLAAAVLKVLIEMGRTDE 235
Query: 236 EFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQH 295
F+ +VGF +VK +K + E T + + +A +A G + G+G+ ++
Sbjct: 236 TFISEHSVGFDDVKELLKTVSLEEFIVKTETSMEELEYLAGLYAD-GPVSTFMGLGMQRY 294
Query: 296 VSGVENVIAVIDMALLLGYVGDKGGLYPMRGQN--NVQGAAYMGALSEFLPGYVPLTDST 353
+G + + + G VG KGG G N NVQ LP T
Sbjct: 295 KNGGGTIRWIDALVAASGNVGIKGG-----GANFGNVQIGESFAKTKLTLPEL-----KT 344
Query: 354 FRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQK 413
+ + + E++ T + ++ + + NP N KVR+A +K
Sbjct: 345 TSRSFSMMTQAEEVLT------------AADPAIEMIIVTCGNPLTQVPNTNKVRQAFEK 392
Query: 414 LELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNS--ERRIQWSFKVCDPPGEAKPDW 471
+ + V D +T TA Y+LP A E+E Y +S +Q+ K+ +P GEAK D
Sbjct: 393 VPMTVAIDSIMTDTAELCDYVLPTATVFEEEDIYYSSMYHHYVQYGKKLVEPQGEAKSDS 452
Query: 472 EILSLLGKELDLPGFPYEKVEDITEEYFKM---FPELAGISVEELKNSNGIIIPYKRL-- 526
I S L K L GF E E T+E+ +M E +++E LK + +P K++
Sbjct: 453 WIWSELAKRL---GFG-ELFEYSTQEFLEMGLSSLEAEDVTLERLKEKGHLPLPVKQVPW 508
Query: 527 HTIRFQTPDGKARL-----------------IAVEQIMPWEQPNGEYPLILTTVRVMSHY 569
+F TP GK + E + E+ G+YP L ++ H
Sbjct: 509 DDYQFLTPSGKFEFTSSLAEQKGFSGSLQLNVPEESVFHNEELAGKYPYTLLSI----HP 564
Query: 570 NTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK---- 625
+ P + KL V IS A ++DGD V + RGS+ K K+ K
Sbjct: 565 QRSNHSQHVPFIEKL-QHVQVDISPDIAAGQDLQDGDEVVIFNDRGSMKGKVKVMKQAHA 623
Query: 626 ----VKEGVIVVPFHFDANILTNDALNKAG 651
+ EG+ F N LTND + G
Sbjct: 624 KTINIDEGMWAA-FGGSVNALTNDTNSDNG 652
>pir||G69895 formate dehydrogenase homolog yoaE - Bacillus subtilis
>gi|2618996|gb|AAB84420.1| (AF027868) putative formate
dehydrogenase [Bacillus subtilis]
>gi|2634251|emb|CAB13750.1| (Z99114) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 677
Score = 204 bits (513), Expect = 3e-51
Identities = 180/659 (27%), Positives = 295/659 (44%), Gaps = 64/659 (9%)
Query: 7 VIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNR----GKLCPKGLHALEFVLSKDRLRY 61
+ + VC C C LLI K K+ +G+P+ G +C K + E + + RL
Sbjct: 11 IFKSVCSLDCPDQCGLLIHKKDGKIVKVQGDPDHPVTAGNICNKVRNMTERIYDEKRLTT 70
Query: 62 PLKKVGSD----FVRIGWDDAIREIASKLREIKERYGPNAI---AFIASSKVSNEENYLL 114
PLK+ G+ F I W +AI I S+ +++ + G +I +F + E +
Sbjct: 71 PLKRTGAKGQAIFEPISWKEAIDTITSRWKQLIDEEGAESILPYSFYGNMGKLTAEG-MD 129
Query: 115 QKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETH 174
++ +G++ ++ +C +A K T+G +P + K + WG N T+
Sbjct: 130 RRFFYRMGSSQLERT--ICSKAGSEGYKYTMGISAGIDPEETVHT-KLFIFWGINAVSTN 186
Query: 175 PVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYD 234
+ A++KGAKI+VIDV + T RLAD+ + I PGTD LA +M+++ E L+D
Sbjct: 187 MHQITIAQKARKKGAKIVVIDVHKNQTGRLADWFIPIKPGTDSALALGIMHILFKENLHD 246
Query: 235 KEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQ 294
+ F+ TVG+ E++ VK+Y PE +TG+ + I +A+ + + I G G
Sbjct: 247 EAFLSEYTVGYEELREHVKQYDPEKVSTITGVSTEDIYRLAKMYGETSPSFIRIGNGPQH 306
Query: 295 HVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTF 354
H +G V + + + G GG ++ + L G P
Sbjct: 307 HDNGGMIVRTIACLPAITGQWLHTGGGAIKHNSGILEYNTNALQRPDLLKGRTP------ 360
Query: 355 RKRVASLWGVEDIPTERGLYLTELWDAILEGE--VKALYIMGENPAVSEANVLKVRKALQ 412
R + +L +LE + +++L+I G NPAV KVR+ L
Sbjct: 361 ----------------RSFNMNQLGRVLLETDPPIRSLFIYGTNPAVVAPEANKVRQGLL 404
Query: 413 KLELL-VVQDLFLTRTARFAHYILPAAAFCEKEGSYMNS-ERRIQWSFKVCDPPGEAKPD 470
+ +L VV DLFLT TA +A +LPA + E Y + IQ V + GE+K +
Sbjct: 405 REDLFTVVHDLFLTETAAYADIVLPATSAFENTDFYTSYWHHYIQLQQPVIERYGESKSN 464
Query: 471 WEILSLLGKELDLPGFPYEKVEDITEEYFKMF------PELAGISVEEL-KNSNGIIIPY 523
E+ LL + + GF ++++D E + P LA I + L K+S
Sbjct: 465 TEVFRLLAEAM---GFTDQELKDSDEVLIRQALDHPDNPHLAEIDYDSLTKHSFMKAKRE 521
Query: 524 KRLHTIRFQTPDGKARLIAVEQ------IMPWEQP---NGEYPLILTTVRVMSHYNTGEM 574
K L TP GK L + + +P P + E+P + V +H
Sbjct: 522 KPLFPGELPTPSGKIELYSEKMKQDGFPALPTYTPLVTDNEHPFMY--VPGPNHNFLNST 579
Query: 575 TMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKI-SKVKEGVIV 632
+ +KL P ++I+ DA+K+GI DG V++ RG L A + +V GV+V
Sbjct: 580 FSNNEKHIKLEKTPKLFINTKDAEKHGIVDGAPVRIWNSRGECELTAAVGEQVLPGVVV 638
>gb|AAD13438.1| (AE000244) formate dehydrogenase-N, nitrate-inducible, alpha
subunit [Escherichia coli K12]
Length = 1015
Score = 203 bits (510), Expect = 7e-51
Identities = 188/672 (27%), Positives = 285/672 (41%), Gaps = 156/672 (23%)
Query: 8 IRVVCPYCGFGCNLLI-----DPKTLKVKPY--KGEPN----RGKLCPKGLHALEFVLSK 56
IR C YC GC LL+ K + Y +G+P+ RG LCPKG L++V S+
Sbjct: 46 IRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSE 105
Query: 57 DRLRYP-LKKVGSD-FVRIGWDDAIREIASKLREI-------KERYGPN-----AIAFIA 102
+RLRYP + GSD + RI W++A IA ++ K G + +
Sbjct: 106 NRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLC 165
Query: 103 SSKVSNEENYLLQKIARLLGTNNIDNCARLC-HEASVHALKMTLGAGVQTNPYSDLENFK 161
+S SNE L QK AR LG +DN AR+ H +V +L T G G TN + D++N
Sbjct: 166 ASGASNETGMLTQKFARSLGMLAVDNQARV-UHGPTVASLAPTFGRGAMTNHWVDIKNAN 224
Query: 162 AIMIWGYNPAETHPVVMDYILNAKRKG-AKIIVIDVRETTTMRLADYKLMINPGTDITLA 220
+M+ G N AE HPV + + AK A +IV+D R T T +AD I GTDIT
Sbjct: 225 VVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFL 284
Query: 221 NALMNVIISEGLYDKEFVRSRT-----------------VGFSEVKMAVKK--------- 254
+ ++ +I + E+V+ T G+ K K
Sbjct: 285 SGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDE 344
Query: 255 --------------------------YTPEYAEKVTGIE----AKLIREVAREFAKAGSG 284
YTP+ E + G K+ +A A +
Sbjct: 345 NGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTT 404
Query: 285 AIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEFL 343
++ +G TQH G +N+ + + LLLG +G GG+ +RG +N+QG +G LS L
Sbjct: 405 TFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSL 464
Query: 344 PGYVPLTD--------------------------STFRKRVASL--------------WG 363
PGY+ L S + K SL WG
Sbjct: 465 PGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWG 524
Query: 364 VEDIPTERGLY-LTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDL 422
+ +P Y + + ++ + EG+V + G NP S + KV L KL+ +VV D
Sbjct: 525 YDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDP 584
Query: 423 FLTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRIQWSFKVCDPPG 465
+T T+ F + LP+ F E++GS NS R +QW +K D PG
Sbjct: 585 LVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPG 644
Query: 466 EAKPDWEILSLL------------GKELD-LPGFPYEKVEDITEEYFKMFPELAGISVEE 512
EA+ D EIL+ + GK ++ L + + + ++ E G ++E+
Sbjct: 645 EARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALED 704
Query: 513 LKNSNGIIIPYK 524
L ++NG++I K
Sbjct: 705 LYDANGVLIAKK 716
>gb|AAB03027.1| (L19201) formate dehydrogenase-O alpha subunit [Escherichia coli]
Length = 1016
Score = 202 bits (509), Expect = 9e-51
Identities = 170/611 (27%), Positives = 261/611 (41%), Gaps = 141/611 (23%)
Query: 6 RVIRVVCPYCGFGCNLLI-----DPKTLKVKPY--KGEP----NRGKLCPKGLHALEFVL 54
R R C YC GC LL+ K K + +G+P NRG LCPKG ++F+
Sbjct: 44 RETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIH 103
Query: 55 SKDRLRYP-LKKVGSD-FVRIGWDDAIREIASKLREIKER--YGPNA----------IAF 100
S+ RL++P + GSD + +I W++A IA ++E ++ NA
Sbjct: 104 SESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGM 163
Query: 101 IASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENF 160
+ +S SNE YL QK +R LG +DN AR+ H +V +L T G G TN + D++N
Sbjct: 164 LCASASSNETGYLTQKFSRALGMLAVDNQARVXHGPTVASLAPTFGRGAMTNHWVDIKNA 223
Query: 161 KAIMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVR-ETTTMRLADYKLMINPGTDITL 219
+++ G N AE HPV + + AK + D T T +ADY I GTDI
Sbjct: 224 NLVVVMGGNAAEAHPVGFRWAMEAKIHNRREADCDRSCFTRTAAVADYYAPIRSGTDIAF 283
Query: 220 ANALMNVIISEGLYDKEFVRSRT---------VGFSE----------------------- 247
+ ++ +++ +++E+ + T GF +
Sbjct: 284 LSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYELD 343
Query: 248 --------------------VKMAVKKYTPEYAEKVTGIE----AKLIREVAREFAKAGS 283
+K V +YTP+ E + G K+ +A A +
Sbjct: 344 GKRLRKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDKT 403
Query: 284 GAIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALSEF 342
+ ++ +G TQH G +N+ + + LLLG +G GG+ +RG +N+QG +G LS+
Sbjct: 404 ASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSQS 463
Query: 343 LPGYVPL-----TD---------------------STFRKRVASL--------------W 362
LPGY+ L TD + K S+ W
Sbjct: 464 LPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSW 523
Query: 363 GVEDIPT-ERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
G + +P ++G + + ++ + EG+V G NP S N KV L KL+ LV D
Sbjct: 524 GFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTID 583
Query: 422 LFLTRTARFAH-----------------YILPAAAFCEKEGSYMNSERRIQWSFKVCDPP 464
T T+ F + LP+ F E+ GS +NS R +QW +K D P
Sbjct: 584 PLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADAP 643
Query: 465 GEAKPDWEILS 475
G A D EILS
Sbjct: 644 GIALTDGEILS 654
>gb|AAC07107.1| (AE000720) formate dehydrogenase alpha subunit [Aquifex aeolicus]
Length = 1015
Score = 197 bits (495), Expect = 4e-49
Identities = 175/639 (27%), Positives = 270/639 (41%), Gaps = 151/639 (23%)
Query: 6 RVIRVVCPYCGFGCNLL----------IDPKTLKVKPYKGEP-NRGKLCPKGLHALEFVL 54
+V + +CPYC C +L + + + V+ +P NRG LCPKG +FV
Sbjct: 47 KVTKSICPYCSVSCGILAYSLSDGAMNVKERIIHVEGNPDDPINRGTLCPKGATLRDFVN 106
Query: 55 SKDRLRYPL-KKVGS-DFVRIGWDDAIREIASKLREIKERY------------GPNAIAF 100
+ DRL PL + GS ++ I WD+AI + A +++ ++R ++I +
Sbjct: 107 APDRLTKPLYRPAGSTEWKEISWDEAIEKFARWVKDTRDRTFIHKDKAGRVVNRCDSIVW 166
Query: 101 IASSKVSNEENYLLQKIARLLGTNNIDNCARLC-HEASVHALKMTLGAGVQTNPYSDLEN 159
S + NEE +L+ KI LG + + A + H +V +L T G G TN + D+ N
Sbjct: 167 AVGSPLGNEEGWLMVKIGIALGLSARETQATI-UHAPTVASLAPTFGRGAMTNNWVDISN 225
Query: 160 FKAIMIWGYNPAETHPVVMDYILNAKRK-GAKIIVIDVRETTTMRLADYKLMINPGTDIT 218
+ + G NPAE HP + + A+ K GAKII ID R T +AD + I PGTDI
Sbjct: 226 SDLVFVMGGNPAENHPCGFKWAIKAREKRGAKIICIDPRFNRTAAVADIFVQIRPGTDIA 285
Query: 219 LANALMNVIISEGLYDKEFVRSRTV---------GFSE---------------------- 247
L+N ++ Y KE+VR T GF +
Sbjct: 286 FLGGLINYVLQNEKYQKEYVRLHTTGPFIVREDFGFKDGLFTGYDPKTRSYDTTTWDYEF 345
Query: 248 ------------------VKMAVKKYTPEYAEKVT----GIEAKLIREVAREFAKAGSG- 284
V +K++ Y +V G + VA E AK G+
Sbjct: 346 DPATGYPKMDPEMKHPRCVLNILKEHYSRYTPEVVSQICGCSKEDFLRVAEEVAKCGAPN 405
Query: 285 ---AIMWGMGLTQHVSGVENVIAVIDMALLLGYVG-DKGGLYPMRGQNNVQGAAYMGALS 340
I++ +G T H G + + + LLLG +G GG+ +RG +NVQG + +
Sbjct: 406 KFMTILYALGWTHHSYGTQLIRTACMLQLLLGNIGCPGGGINALRGHSNVQGMTDLAGQN 465
Query: 341 EFLPGYVP------------LTDSTFRKR------------------VASLWGVEDIPTE 370
+ LP Y+ L + T RK + +WG P
Sbjct: 466 KNLPTYIKPPKPEEQTLAQHLKNRTPRKLHPTSLNYWANYPKFFISFLKCMWGDAATPEN 525
Query: 371 ----RGLYLTE----LWDAILE----GEVKALYIMGENPAVSEANVLKVRKALQKLELLV 418
LY E WD ++ G+++ + N + N K +AL+ L+ +V
Sbjct: 526 DFAYDYLYKPEGGYNSWDKFIDDMYKGKIEGVVTAALNFLNNTPNAKKTVRALKNLKWMV 585
Query: 419 VQDLFLTRTARF-------------AHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPG 465
V D F+ TA+F +LP A F EKEGS+ NS R ++W +K DPPG
Sbjct: 586 VMDPFMIETAQFWKAEGLDPKEVKTEILVLPTAVFLEKEGSFTNSARWVKWKYKATDPPG 645
Query: 466 EAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPE 504
+AK ++ I G + K+++ E+ FPE
Sbjct: 646 DAKDEFWIF----------GRFFMKLKEFYEKEGGAFPE 674
>gb|AAC79443.1| (AF083948) periplasmic nitrate reductase large subunit precursor
[Pseudomonas sp. G-179]
Length = 834
Score = 189 bits (476), Expect = 7e-47
Identities = 145/520 (27%), Positives = 235/520 (44%), Gaps = 58/520 (11%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKG----EPNRGKLCPKGLHALEFVLSKDRLRYPL--KK 65
C +CG GC +++ K V G E NRG C KG + + KDRL PL K+
Sbjct: 50 CRFCGTGCGVMVGVKENHVVATHGDMEAEVNRGLNCVKGYFLSKIMYGKDRLTTPLLRKR 109
Query: 66 VG-----SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
G +F + W++A +A K ++ + GP A+ S + + E Y K+ R
Sbjct: 110 NGVFDKEGEFEPVTWEEAFDIMAEKAKKTLKEKGPTALGMFGSGQWTIFEGYAATKLMRA 169
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NN+D AR C ++ + T G Y D E+ A ++WG N AE HP++
Sbjct: 170 GFRSNNLDPNARHCMASAAYGFMRTFGMDEPMGCYDDFEHADAFVLWGSNMAEMHPILWT 229
Query: 180 YILNAKRKGAKIIVIDVRETTT---MRLADYKLMINPGTDITLANALMNVIISEGLYDKE 236
+ + +R G + + + V T T M LAD L+ PGTD+ + N + N II G ++E
Sbjct: 230 RLAD-RRLGHEHVKVSVLSTFTHRSMDLADIPLVFKPGTDLAILNYIANHIIQTGRVNQE 288
Query: 237 FVRSRT----------------------------------VGFSEVKMAVKKYTPEYAEK 262
F+ T + F K V +YT E +
Sbjct: 289 FIDKNTKFMQATTDIGYGLRAEHPLEVKATGAAKAAEMTPIDFEAFKKHVSEYTLEKVAE 348
Query: 263 VTGIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL 321
+ G++ + ++A +A + +W MG QHV GV V ++ LL G + + G
Sbjct: 349 LAGVDKGFLEQLAELYADPKVKVMSLWTMGFNQHVRGVWANQMVYNIHLLTGKISEPGNS 408
Query: 322 -YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTE 377
+ + GQ + G A +G + LP + +T+ RK LW + IP + G + +
Sbjct: 409 PFSLTGQPSACGTAREVGTFAHRLPADMTVTNPEHRKHAEELWNIPHGIIPEKPGYHAVQ 468
Query: 378 LWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKL--ELLVVQDLFLTRTARFAHYIL 435
+ +G++ ++ N + AN + +VV D + T TA A IL
Sbjct: 469 QDRMLHDGKLNFYWVQVNNNMQAAANNSNEAYIGYRNPDNFIVVSDAYPTVTAMTADLIL 528
Query: 436 PAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEIL 474
PAA + EKEG+Y N+ERR ++ + PGEA+ D W+++
Sbjct: 529 PAAMWVEKEGAYGNAERRTHVWHQLVNAPGEARSDLWQLV 568
Score = 78.8 bits (191), Expect = 2e-13
Identities = 45/122 (36%), Positives = 69/122 (55%), Gaps = 4/122 (3%)
Query: 535 DGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISE 594
DG+A ++A P E P+ E+ L T RV+ H+++G MTMR P L K +++
Sbjct: 696 DGRAVILAAPYEPPAESPDDEFGFWLVTGRVLEHWHSGSMTMRVPELYKAFPGARCFMNG 755
Query: 595 SDAKKYGIKDGDLVKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKAG 651
DA++ GI G VK+++RRG I+ + I +++ GVI VP+ FDA+ L N A
Sbjct: 756 DDARRLGINQGGQVKIQSRRGEIISRVDIRGRNRMPHGVIFVPW-FDASQLINKVTLDAT 814
Query: 652 TP 653
P
Sbjct: 815 DP 816
>gb|AAD46689.1|AF040988_4 (AF040988) periplasmic nitrate reductase precursor NapA
[Pseudomonas sp. G-179]
Length = 853
Score = 189 bits (476), Expect = 7e-47
Identities = 145/520 (27%), Positives = 235/520 (44%), Gaps = 58/520 (11%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKG----EPNRGKLCPKGLHALEFVLSKDRLRYPL--KK 65
C +CG GC +++ K V G E NRG C KG + + KDRL PL K+
Sbjct: 69 CRFCGTGCGVMVGVKENHVVATHGDMEAEVNRGLNCVKGYFLSKIMYGKDRLTTPLLRKR 128
Query: 66 VG-----SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
G +F + W++A +A K ++ + GP A+ S + + E Y K+ R
Sbjct: 129 NGVFDKEGEFEPVTWEEAFDIMAEKAKKTLKEKGPTALGMFGSGQWTIFEGYAATKLMRA 188
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NN+D AR C ++ + T G Y D E+ A ++WG N AE HP++
Sbjct: 189 GFRSNNLDPNARHCMASAAYGFMRTFGMDEPMGCYDDFEHADAFVLWGSNMAEMHPILWT 248
Query: 180 YILNAKRKGAKIIVIDVRETTT---MRLADYKLMINPGTDITLANALMNVIISEGLYDKE 236
+ + +R G + + + V T T M LAD L+ PGTD+ + N + N II G ++E
Sbjct: 249 RLAD-RRLGHEHVKVSVLSTFTHRSMDLADIPLVFKPGTDLAILNYIANHIIQTGRVNQE 307
Query: 237 FVRSRT----------------------------------VGFSEVKMAVKKYTPEYAEK 262
F+ T + F K V +YT E +
Sbjct: 308 FIDKNTKFMQATTDIGYGLRAEHPLEVKATGAAKAAEMTPIDFEAFKKHVSEYTLEKVAE 367
Query: 263 VTGIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL 321
+ G++ + ++A +A + +W MG QHV GV V ++ LL G + + G
Sbjct: 368 LAGVDKGFLEQLAELYADPKVKVMSLWTMGFNQHVRGVWANQMVYNIHLLTGKISEPGNS 427
Query: 322 -YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTE 377
+ + GQ + G A +G + LP + +T+ RK LW + IP + G + +
Sbjct: 428 PFSLTGQPSACGTAREVGTFAHRLPADMTVTNPEHRKHAEELWNIPHGIIPEKPGYHAVQ 487
Query: 378 LWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKL--ELLVVQDLFLTRTARFAHYIL 435
+ +G++ ++ N + AN + +VV D + T TA A IL
Sbjct: 488 QDRMLHDGKLNFYWVQVNNNMQAAANNSNEAYIGYRNPDNFIVVSDAYPTVTAMTADLIL 547
Query: 436 PAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEIL 474
PAA + EKEG+Y N+ERR ++ + PGEA+ D W+++
Sbjct: 548 PAAMWVEKEGAYGNAERRTHVWHQLVNAPGEARSDLWQLV 587
Score = 78.8 bits (191), Expect = 2e-13
Identities = 45/122 (36%), Positives = 69/122 (55%), Gaps = 4/122 (3%)
Query: 535 DGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISE 594
DG+A ++A P E P+ E+ L T RV+ H+++G MTMR P L K +++
Sbjct: 715 DGRAVILAAPYEPPAESPDDEFGFWLVTGRVLEHWHSGSMTMRVPELYKAFPGARCFMNG 774
Query: 595 SDAKKYGIKDGDLVKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKAG 651
DA++ GI G VK+++RRG I+ + I +++ GVI VP+ FDA+ L N A
Sbjct: 775 DDARRLGINQGGQVKIQSRRGEIISRVDIRGRNRMPHGVIFVPW-FDASQLINKVTLDAT 833
Query: 652 TP 653
P
Sbjct: 834 DP 835
>gb|AAC23522.1| (AF069545) periplasmic nitrate reductase precursor [Rhodobacter
sphaeroides f. sp. denitrificans]
>gi|3345489|dbj|BAA31961.1| (AB016290) large subunit of
a periplasmic nitrate reductase [Rhodobacter sphaeroides
f. sp. denitrificans]
Length = 831
Score = 189 bits (475), Expect = 9e-47
Identities = 146/565 (25%), Positives = 251/565 (43%), Gaps = 64/565 (11%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKG----EPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
C +CG GC +++ + +V G E NRG C KG + + +DRL PL ++
Sbjct: 48 CRFCGTGCGVMVGTRDGQVVATHGDTQAEVNRGLNCVKGYFLSKIMYGEDRLTTPLLRMK 107
Query: 68 S-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+F + WD+A +A++ + + + GP A+ S + + E Y K+ R
Sbjct: 108 DGVYHKEGEFAPVSWDEAFDVMAAQAKRVLKDKGPKAMGMFGSGQWTIWEGYAASKLMRA 167
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NN+D AR C ++ A T G Y D E A ++WG N AE HP++
Sbjct: 168 GFLSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWS 227
Query: 180 YILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
+ + + + ++ V+ +M LAD ++ PGTD+ + N + + IIS G +++F
Sbjct: 228 RLTDRRLSHEHVRVAVLSTFTHRSMDLADTPIIFRPGTDLAILNYIAHHIISTGRVNRDF 287
Query: 238 VRSRT----------------------------------VGFSEVKMAVKKYTPEYAEKV 263
V T F V +YT E A ++
Sbjct: 288 VDRHTNFALGATDIGYGLRPEHQLQLIAKGAADAGAMTPTDFETFAALVSEYTLERAAEI 347
Query: 264 TGIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL- 321
+G+E L+ E+A +A + +W MG QHV GV V ++ LL G + + G
Sbjct: 348 SGVEPALLEELAELYADPDRKVMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNSP 407
Query: 322 YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTEL 378
+ + GQ + G A +G + LP + +T+ R +W + +P G + E
Sbjct: 408 FSLTGQPSACGTAREVGTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLPDWVGAHAVEQ 467
Query: 379 WDAILEGEVKALYIMGENPAVSEANV-LKVRKALQKLE-LLVVQDLFLTRTARFAHYILP 436
+ +GE+ ++ N + N+ + + E +VV D + T T R A +LP
Sbjct: 468 DRKLHDGEINFYWVQVNNNMQAAPNIDQETYPGYRNPENFIVVSDAYPTVTGRCADLVLP 527
Query: 437 AAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEILSLLGKELDLPGFPYEKVEDIT 495
AA + EKEG+Y N+ERR + ++ + PGEA+ D W+++ + + E
Sbjct: 528 AAMWVEKEGAYGNAERRTHFWHQLVEAPGEARSDLWQLMEFSKR--------FTTDEVWP 579
Query: 496 EEYFKMFPELAGISVEELKNSNGII 520
EE P G ++ E+ +NG +
Sbjct: 580 EEILAAAPAYRGKTLFEVLFANGSV 604
Score = 73.7 bits (178), Expect = 6e-12
Identities = 43/123 (34%), Positives = 67/123 (53%), Gaps = 4/123 (3%)
Query: 534 PDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYIS 593
PDG+A ++ V P E P+ E+ L T RV+ H+++G MT+R P L K V ++
Sbjct: 693 PDGRAVILGVPYEPPAESPDEEFGFWLVTGRVLEHWHSGSMTLRVPELYKAFPGAVCFMH 752
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKA 650
DA+ G+ G V+V +RRG I + + +++ GV+ VP+ FDA+ L N A
Sbjct: 753 PEDARSRGLNRGSEVRVISRRGEIRTRLETRGRNRMPRGVVFVPW-FDASQLINKVTLDA 811
Query: 651 GTP 653
P
Sbjct: 812 NDP 814
>sp|P39185|NAPA_ALCEU PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|538718|pir||A48489
nitrate reductase (EC 1.7.99.4) A chain precursor,
periplasmic - Alcaligenes eutrophus (strain H16)
>gi|402547|emb|CAA50507.1| (X71385) NAPA [Ralstonia
eutropha]
Length = 831
Score = 188 bits (473), Expect = 2e-46
Identities = 153/571 (26%), Positives = 251/571 (43%), Gaps = 80/571 (14%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLKKV- 66
C +CG GC + + K KV +G+P N+G C KG + + +DRL PL ++
Sbjct: 48 CRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYGQDRLTRPLMRMK 107
Query: 67 ------GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
DF + WD A E+ + + + + GP A+A A ++ + E Y K+ +
Sbjct: 108 NGKYDKNGDFAPVTWDQAFDEMERQFKRVLKEKGPTAVACSAPAQWTVWEGYAAAKLYKA 167
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NNID AR C ++ T G Y D E A ++WG N AE HP++
Sbjct: 168 GFRSNNIDPNARHCMASAAAGFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWT 227
Query: 180 YILNAKRKGAKIIVIDVRETTTMR---LADYKLMINPGTDITLANALMNVIISEGLYDKE 236
+ + + K V+ V T T R LAD ++ P TD+ + N + N II +K+
Sbjct: 228 RVTDRRLSHPKTRVV-VLSTFTHRCFDLADIGIIFKPQTDLAMLNYIANYIIRNNKVNKD 286
Query: 237 FVRSRTV----------------------------------GFSEVKMAVKKYTPEYAEK 262
FV TV F E V KY +Y K
Sbjct: 287 FVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSK 346
Query: 263 VTGIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL 321
++ + + ++A +A + +W MG QH G V ++ LL G + G
Sbjct: 347 LSAVPKAKLDQLAELYADPNIKVMSLWTMGFNQHTRGTWANNMVYNLHLLTGKIATPGNS 406
Query: 322 -YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVE--DIPTERGLYLTE 377
+ + GQ + G A +G S LP + +T+ R+ +W + IP + G
Sbjct: 407 PFSLTGQPSACGTAREVGTFSHRLPADMVVTNPKHREEAERIWKLPPGTIPDKPG----- 461
Query: 378 LWDAIL------EGEVKALYIMGENPAVSEANVLK--VRKALQKLELLVVQDLFLTRTAR 429
+DA+L +G++ A ++ N + AN+++ + +VV D + T TA
Sbjct: 462 -YDAVLQNRMLKDGKLNAYWVQVNNNMQAAANLMEEGLPGYRNPANFIVVSDAYPTVTAL 520
Query: 430 FAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEILSLLGKELDLPGFPY 488
A +LP+A + EKEG+Y N+ERR Q+ ++ D PGEA+ D W+++ +
Sbjct: 521 AADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLVEFAKR--------- 571
Query: 489 EKVEDI-TEEYFKMFPELAGISVEELKNSNG 518
KVE++ E PE G ++ ++ NG
Sbjct: 572 FKVEEVWPPELIAKKPEYKGKTLYDVLYRNG 602
Score = 73.7 bits (178), Expect = 6e-12
Identities = 45/126 (35%), Positives = 67/126 (52%), Gaps = 4/126 (3%)
Query: 531 FQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVV 590
+ PDGKA + A+ P E P+ EYP L T RV+ H+++G MT R P L + VV
Sbjct: 690 YGNPDGKAVIFALPYEPPAESPDKEYPYWLVTGRVLEHWHSGSMTRRVPELYRSFPNAVV 749
Query: 591 YISESDAKKYGIKDGDLVKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDAL 647
++ DAK G++ G V+V +RRG + + + G++ VP+ FDA+ L N
Sbjct: 750 FMHPEDAKALGLRRGVEVEVVSRRGRMRSRIETRGRDAPPRGLVFVPW-FDASQLINKVT 808
Query: 648 NKAGTP 653
A P
Sbjct: 809 LDATCP 814
>sp|Q53176|NAPA_RHOSH PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|1150570|emb|CAA86827.1|
(Z46806) NapB [Rhodobacter sphaeroides]
Length = 831
Score = 181 bits (454), Expect = 3e-44
Identities = 149/566 (26%), Positives = 254/566 (44%), Gaps = 66/566 (11%)
Query: 12 CPYCGFGCNLLIDPKTLKVKPYKG----EPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
C +CG GC +++ + +V G E NRG C KG + + +DRL PL ++
Sbjct: 48 CRFCGTGCGVMVGTRDGQVVATHGDTQAEVNRGLNCVKGYFLSKIMYGEDRLTTPLLRMK 107
Query: 68 S-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+F + WD+A +A++ + + + P A+ S + + E Y K+ R
Sbjct: 108 DGVYHKEGEFAPVSWDEAFDVMAAQAKLVLKEKAPEAVGMFGSGQWTIWEGYAASKLMRA 167
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
+NN+D AR C ++ A T G Y D E A ++WG N AE HP++
Sbjct: 168 GFRSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWS 227
Query: 180 YILNAKRKGAKIIVIDVRETTTMR---LADYKLMINPGTDITLANALMNVIISEGLYDKE 236
L +R + + + V T T R L+D ++ PGTD + N + + IIS G +++
Sbjct: 228 R-LTDRRLSHEHVRVAVLSTFTHRSSDLSDTPIIFRPGTDRAILNYIAHHIISTGRVNRD 286
Query: 237 FVRSRT--------VGFS-----EVKMAVK---------------------KYTPEYAEK 262
FV T +G+ ++++A K +YT E A +
Sbjct: 287 FVDRHTNFALGATDIGYGLRPEHQLQLAAKGAADAGAMTPTDFETFAALVSEYTLEKAAE 346
Query: 263 VTGIEAKLIREVAREFAKAG-SGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL 321
++G+E L+ E+A +A +W MG QHV GV V ++ LL G + + G
Sbjct: 347 ISGVEPALLEELAELYADPDRKWMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNS 406
Query: 322 -YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVED--IPTERGLYLTE 377
+ + GQ G A +G + LP + +T+ R +W + +P G + E
Sbjct: 407 PFSLTGQPFACGTAREVGTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLPDWVGAHAVE 466
Query: 378 LWDAILEGEVKALYIMGENPAVSEANV-LKVRKALQKLE-LLVVQDLFLTRTARFAHYIL 435
+ +GE+ ++ N + N+ + + E +VV D + T T R A +L
Sbjct: 467 QDRKLHDGEINFYWVQVNNNMQAAPNIDQETYPGYRNPENFIVVSDAYPTVTGRAADLVL 526
Query: 436 PAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEILSLLGKELDLPGFPYEKVEDI 494
PAA + EKEG+Y N+ERR + ++ + PGEA+ D W+++ + + E
Sbjct: 527 PAAMWVEKEGAYGNAERRTHFWHQLVEAPGEARSDLWQLMEFSKR--------FTTDEVW 578
Query: 495 TEEYFKMFPELAGISVEELKNSNGII 520
EE P G ++ E+ +NG +
Sbjct: 579 PEEILSAAPAYRGKTLFEVLFANGSV 604
Score = 73.4 bits (177), Expect = 8e-12
Identities = 43/123 (34%), Positives = 67/123 (53%), Gaps = 4/123 (3%)
Query: 534 PDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYIS 593
PDG+A ++ V P E P+ E+ L T RV+ H+++G MT+R P L K V ++
Sbjct: 693 PDGRAVILGVPYEPPAESPDEEFGFWLVTGRVLEHWHSGSMTLRWPELYKAFPGAVCFMH 752
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKA 650
DA+ G+ G V+V +RRG I + + +++ GV+ VP+ FDA+ L N A
Sbjct: 753 PEDARSRGLNRGSEVRVISRRGEIRTRLETRGRNRMPRGVVFVPW-FDASQLINKVTLDA 811
Query: 651 GTP 653
P
Sbjct: 812 NDP 814
>emb|CAA03851.1| (AJ000006) nitrate reductase [Shewanella frigidimarina]
Length = 397
Score = 180 bits (452), Expect = 4e-44
Identities = 117/399 (29%), Positives = 192/399 (47%), Gaps = 20/399 (5%)
Query: 7 VIRVVCPYCGFGCNLLIDPKT-----------LKVKPYKGEPNRGKLCPKGLHALEFVLS 55
V++ C YCG GC + + + V K N G LC KG L+ +
Sbjct: 3 VVQSSCAYCGVGCGVSVSSNKPNWTDVDAADLILVGDNKHPANYGHLCAKGERLLDSLAQ 62
Query: 56 KDRLRYPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQ 115
+ LRYP + G + + WD A IA + +GP+++A S ++ E+ Y+
Sbjct: 63 PNVLRYPKLRSG---MPLDWDKASTLIADTFAKTIAEHGPDSVALYLSGQLLTEDYYVAN 119
Query: 116 KIAR-LLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETH 174
K A+ L T N+D +RLC ++V A++ G V Y DLE I++ G N A TH
Sbjct: 120 KFAKGFLKTANVDTNSRLCMSSAVSAMQRAFGEDVVPGCYDDLEQADVIVLVGANTAWTH 179
Query: 175 PVVMDYILNA-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLY 233
PV+ IL A K A+++VID T T + AD L I PG D+TL + L+ + +
Sbjct: 180 PVLFQRILAAIKANNAQLVVIDPLSTATAKQADLHLAIKPGADLTLFHGLLGYLADQNRV 239
Query: 234 DKEFVRSRTVGFSEVKMAVKKYTPEYAEKVT--GIEAKLIREVAREFAKAGSGAIMWGMG 291
D ++ + T GF V + ++ + A+ T G+ + + + A G
Sbjct: 240 DHAYIAAHTEGFDTVVLQAQQLSANLADLATQVGVSVTQLTQFYQLVANNKKVLTASCQG 299
Query: 292 LTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLT 350
+ Q G + A+I+ L LG++G G G + + GQ N G +G L+ L ++ +
Sbjct: 300 VNQSTIGTDATNAMINCHLALGHIGQAGCGFFSLTGQPNAMGGREVGGLATQLACHMGFS 359
Query: 351 DSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKA 389
++ +A W V+ I ++GL E++DA+ EG++KA
Sbjct: 360 QPE-QQLLADFWKVDSIADQKGLVAVEMFDALAEGKIKA 397
>pir||C75525 molybdopterin oxidoreductase - Deinococcus radiodurans (strain R1)
>gi|6458074|gb|AAF09974.1|AE001899_4 (AE001899)
molybdopterin oxidoreductase [Deinococcus radiodurans]
Length = 697
Score = 178 bits (448), Expect = 1e-43
Identities = 166/660 (25%), Positives = 290/660 (43%), Gaps = 64/660 (9%)
Query: 6 RVIRVVCPY-CGFGCNLLI--------DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLS 55
R + + CP C C L I K +K+ P RG C K +H
Sbjct: 28 RDVLLTCPLDCPDACRLKITIERQPDGSEKAVKLTGDPAHPYTRGFACAKTVHYPARQNH 87
Query: 56 KDRLRYPLKKVGS------DFVRIGWDDAIREIASKLREIKERYGPNAIA-FIASSKVSN 108
+R YPL++V + R+ WD+A+ +IA +LR++ GP +I + + +
Sbjct: 88 PERPLYPLRRVNPKTDPEPQWERVTWDEALDDIAGRLRQLIAERGPQSILPYHYAGNMGL 147
Query: 109 EENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGY 168
E + + R LG ++ +C A A ++ G + +P D+ + + I++WG
Sbjct: 148 LEGSHVHALWRALGAAELEET--ICASAGTAAWEVGYGTRLAVDPL-DVPHARLIVLWGI 204
Query: 169 NPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVII 228
N TH + I A++ GA+++ +D T AD L I PGTD LA +M +
Sbjct: 205 NSLSTHSHLTPQITAARKNGARVVCVDPYRNRTAAFADEHLKIRPGTDAALALGVMRELF 264
Query: 229 SEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMW 288
G D E++ T G +++ A ++++P+ +VTG+ A +R+ AR I
Sbjct: 265 VNGWTDAEYLAQATEGVDDLRAAAEEWSPQRTAEVTGLTADEVRDFARLIGTTRPTYIRV 324
Query: 289 GMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVP 348
G G+T++ +G + AV + L G +GG G V
Sbjct: 325 GYGMTRYENGATALRAVTLLPALTGDWRYRGG------------------------GCVM 360
Query: 349 LTDSTFRKRVASLWGVE-DIPTERGLYLTELWDAILEG-EVKALYIMGENPAVSEANVLK 406
T TF+ L P + + EL +A+ AL++ NPAV + +
Sbjct: 361 STSGTFKLNRRRLGAAHVTRPEAPRVNMNELANALDPAVGFGALFVYNCNPAVVSPDSGR 420
Query: 407 VRKALQKLELL-VVQDLFLTRTARFAHYILPAAAFCEKEGSYMN-SERRIQWSFKVCDPP 464
VR +++ +LL VV + +T +AR A Y+LPA F E Y + + ++ PP
Sbjct: 421 VRAGMRRDDLLVVVLEQAMTESARLADYVLPATTFMESPDLYTSYGHFWLGYNPAELTPP 480
Query: 465 GEAKPDWEILSLLGKELDL-PGFPYEKVEDITEEYFKM-FPELAGISVEELKNSNGI--- 519
GE +P+ + + L + L + Y +D+ E P L G++ E LK +
Sbjct: 481 GECRPNSWVFAELARRLGVEEPSVYWTADDLMAELLDTDHPFLDGLTPERLKAEGTVRLN 540
Query: 520 ----IIPYKRLHTIRFQTPDGKARLIAVEQIMPWE-QPNGEYPLILTTVRVMSHYNTGEM 574
+PY +TP GK +L + +P + + N ++PL L T N+
Sbjct: 541 VPDGFLPY----AYGAETPSGKVQLAPAPRFVPVQAELNADFPLRLLTPPAHHFLNSTYG 596
Query: 575 TMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISKVKE-GVIVV 633
+ + + + EP V + +DA G++DG+ ++ + +G + + K++ + GV VV
Sbjct: 597 NLGNLNRAE-GGEPQVLLCPADAAASGVQDGEYARLTSEQGEVRRRVKVTDAAQPGVAVV 655
>sp|P56914|NUG2_RHIME NADH DEHYDROGENASE I CHAIN G 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN G 2) >gi|5650750|emb|CAB51635.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 853
Score = 175 bits (440), Expect = 1e-42
Identities = 161/641 (25%), Positives = 282/641 (43%), Gaps = 56/641 (8%)
Query: 11 VCPYCGFGCNLLIDPKT---LKVKP-YKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKV 66
+CP+CG GC L + + ++V+ ++ NR LC +G L+F+ S+DR++ P+ +
Sbjct: 223 ICPHCGTGCQLTVGARKGEFMRVRSDWEHGVNRETLCVRGRFGLDFIESRDRIKRPMIRR 282
Query: 67 GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIAR-LLGTNN 125
+ W++A + +L + + A + S ++ NE Y QK+ R +L TNN
Sbjct: 283 DGALTPVSWEEAGDFLRQRLGVAEGK----AAGGLISPRLPNEVLYQFQKLMRTVLRTNN 338
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILN-- 183
+D +R A + L + + +P + ++I G N E +PV +Y+L
Sbjct: 339 VDCSSRW--SAPLDILVPIVASFYSRDPLEQVIGKDCVLIIGGNVTEENPVT-EYLLRDA 395
Query: 184 AKRKGAKIIVIDVRETTTMRLADYKLMINPGTD---ITLANALMNVIISEGLYDKEFVR- 239
A+R+ +++++ R + A L +PG + + A + + EGL D +
Sbjct: 396 ARRRHTRLLMLSARPSRLDADARAVLRAHPGGEGQSLAAVVAALVAVTDEGLPDDILAKT 455
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
S T+ S A+ + E S ++ + L +
Sbjct: 456 SGTIASSGANDALDRLVSTLKE-------------------GRSVTLLVSVDLLRSPLAR 496
Query: 300 ENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVA 359
+ + + ++ LL +G + L + + N GA MG L LPG P+ D R +
Sbjct: 497 KTLEQLGNLLQLLRLLGKEPSLQFLFDRANQMGAWDMGVLPGVLPGLGPIADEATRTKFE 556
Query: 360 SLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
WG E IP E G + + + +G + LY++G +P +S + V +AL LL+V
Sbjct: 557 RSWGAE-IPREPGADVDAMLELCEKGGMGVLYVVGSDPLISYPDREFVERALGAANLLIV 615
Query: 420 QDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGK 479
QD FLT TA A +LPAA + E+ G++ N+E R Q K +P +A+ + I +
Sbjct: 616 QDAFLTDTAGLADVVLPAAGYGEESGTFTNNEGRTQALRKFREPAFDARSNLAIFGFIAA 675
Query: 480 ELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKAR 539
+ P P + I EE ++ P G++ E L + T F
Sbjct: 676 LREQPLQPSTETV-IFEEMTRLVPAYEGLTWEGLGADGAFTTSAPKPWTSGF-------- 726
Query: 540 LIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKK 599
P P L L T + H G ++ RS +L + +P + +S DA
Sbjct: 727 ------FAPLSAPGVTDVLQLITGNCLFH--NGYVSERSETLNSVADDPFIEMSAQDAAG 778
Query: 600 YGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVVPFHFDA 639
+ DGD V V + RG + K K++ + G++ VP ++ A
Sbjct: 779 LSLSDGDQVLVRSARGELTAKLKVNRRFPHGLVFVPENYRA 819
>pir||H64903 hypothetical protein b1501 - Escherichia coli
>gi|1742462|dbj|BAA15174.1| (D90792) Formate
dehydrogenase a chain (EC 1.2.1.2). [Escherichia coli]
>gi|1787778|gb|AAC74574.1| (AE000247) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 759
Score = 175 bits (438), Expect = 2e-42
Identities = 168/619 (27%), Positives = 271/619 (43%), Gaps = 77/619 (12%)
Query: 46 GLHALEFVLSKDRLRYPLK--KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIAS 103
G H LE + RL PLK V + + W A EI ++L+ + PN + F S
Sbjct: 99 GDHELE---AAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSD---PNQVEFYTS 152
Query: 104 SKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAI 163
+ SNE +L Q AR G+NN +C+ +CHE + L ++G G T D E +
Sbjct: 153 GRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLV 212
Query: 164 MIWGYNPAETHPVVMDYILNAKRKGAKIIVI------------------DVRETTTMRLA 205
+ G+NP HP ++ + ++GAK+I I ++ + +LA
Sbjct: 213 ICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLA 272
Query: 206 DYKLMINPGTDITLANALMNVIISE----------GLYDKEFVRSRTVGFSEVKMAVKKY 255
+ G D+ L +M ++I L D EF+++ TVGF E++ V
Sbjct: 273 SAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNS 332
Query: 256 TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYV 315
+ E+++G+ I E+A +A A I +GMG+TQH G +NV ++++ L+ G +
Sbjct: 333 EWKDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI 392
Query: 316 GDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLY 374
G G G+ P+RG +NVQG +G + + F R+ +G P G
Sbjct: 393 GKPGAGICPLRGHSNVQGDRTVGITEK--------PSAEFLARLGERYGFTP-PHAPGHA 443
Query: 375 LTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTR----TARF 430
AI G+ +AL MG N A++ + L +L+L V L R TAR
Sbjct: 444 AIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARH 503
Query: 431 AHYILPAAAFCE----KEGSYM----NSERRIQWSFKVCDPPG-EAKPDWEILSLLGKEL 481
+ YILP E K G+ +S I S V P G K + +++ + +
Sbjct: 504 S-YILPVLGRSEIDMQKNGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQ-- 560
Query: 482 DLPGFPYEKV--EDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTI------RFQT 533
P V E + E+Y ++ ++ + + E + N I H I R+ T
Sbjct: 561 --AALPQSVVAWEYLVEDYDRIRNDIEAV-LPEFADYNQRIRHPGGFHLINAAAERRWMT 617
Query: 534 PDGKARLIAVEQIMPWEQPNGEY--PLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVY 591
P GKA I + ++ E P+ + L++ TVR YNT M VV+
Sbjct: 618 PSGKANFITSKGLL--EDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVF 675
Query: 592 ISESDAKKYGIKDGDLVKV 610
+S AK +K+G+ V +
Sbjct: 676 MSAKQAKICRVKNGERVNL 694
>dbj|BAA15182.1| (D90793) Formate dehydrogenase a chain (EC 1.2.1.2). [Escherichia
coli]
Length = 740
Score = 175 bits (438), Expect = 2e-42
Identities = 168/619 (27%), Positives = 271/619 (43%), Gaps = 77/619 (12%)
Query: 46 GLHALEFVLSKDRLRYPLK--KVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIAS 103
G H LE + RL PLK V + + W A EI ++L+ + PN + F S
Sbjct: 99 GDHELE---AAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSD---PNQVEFYTS 152
Query: 104 SKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAI 163
+ SNE +L Q AR G+NN +C+ +CHE + L ++G G T D E +
Sbjct: 153 GRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLV 212
Query: 164 MIWGYNPAETHPVVMDYILNAKRKGAKIIVI------------------DVRETTTMRLA 205
+ G+NP HP ++ + ++GAK+I I ++ + +LA
Sbjct: 213 ICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLA 272
Query: 206 DYKLMINPGTDITLANALMNVIISE----------GLYDKEFVRSRTVGFSEVKMAVKKY 255
+ G D+ L +M ++I L D EF+++ TVGF E++ V
Sbjct: 273 SAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNS 332
Query: 256 TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYV 315
+ E+++G+ I E+A +A A I +GMG+TQH G +NV ++++ L+ G +
Sbjct: 333 EWKDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI 392
Query: 316 GDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLY 374
G G G+ P+RG +NVQG +G + + F R+ +G P G
Sbjct: 393 GKPGAGICPLRGHSNVQGDRTVGITEK--------PSAEFLARLGERYGFTP-PHAPGHA 443
Query: 375 LTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTR----TARF 430
AI G+ +AL MG N A++ + L +L+L V L R TAR
Sbjct: 444 AIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARH 503
Query: 431 AHYILPAAAFCE----KEGSYM----NSERRIQWSFKVCDPPG-EAKPDWEILSLLGKEL 481
+ YILP E K G+ +S I S V P G K + +++ + +
Sbjct: 504 S-YILPVLGRSEIDMQKNGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQ-- 560
Query: 482 DLPGFPYEKV--EDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTI------RFQT 533
P V E + E+Y ++ ++ + + E + N I H I R+ T
Sbjct: 561 --AALPQSVVAWEYLVEDYDRIRNDIEAV-LPEFADYNQRIRHPGGFHLINAAAERRWMT 617
Query: 534 PDGKARLIAVEQIMPWEQPNGEY--PLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVY 591
P GKA I + ++ E P+ + L++ TVR YNT M VV+
Sbjct: 618 PSGKANFITSKGLL--EDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVF 675
Query: 592 ISESDAKKYGIKDGDLVKV 610
+S AK +K+G+ V +
Sbjct: 676 MSAKQAKICRVKNGERVNL 694
>pir||F83499 periplasmic nitrate reductase protein NapA PA1174 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947098|gb|AAG04563.1|AE004547_9 (AE004547)
periplasmic nitrate reductase protein NapA [Pseudomonas
aeruginosa]
Length = 829
Score = 174 bits (436), Expect = 3e-42
Identities = 141/563 (25%), Positives = 245/563 (43%), Gaps = 64/563 (11%)
Query: 12 CPYCGFGCNLLIDPKTLKVKP----YKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
C +CG GC++++ + +V K E NRG C KG + + DRL PL ++
Sbjct: 43 CRFCGTGCSVMVATRDGQVVATHGDIKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMK 102
Query: 68 S-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
+F I W+ A +A K + + GP ++ S + + E Y K+ +
Sbjct: 103 DGKFDKQGEFQPISWEQAFDIMAEKFKAALKAKGPESVGMFGSGQWTVWEGYAANKLFKA 162
Query: 121 -LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD 179
L +NNID AR C ++V + G Y D+E + ++WG N AE HPV+
Sbjct: 163 GLRSNNIDPNARHCMASAVMGFMRSFGMDEPMGCYDDIEATDSFVLWGSNMAEMHPVLWS 222
Query: 180 YILNAKRKG--AKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
+ + + K+ V+ E + LAD ++ P TD+ + N + N II G +++F
Sbjct: 223 RVTDRRLSAPQVKVAVLSTFEHRSFELADLPMVFKPQTDLIILNYIANHIIESGAVNRDF 282
Query: 238 VRSRT----------------------------------VGFSEVKMAVKKYTPEYAEKV 263
V + F VK YT E +
Sbjct: 283 VERHVRFAHGAEDIGYGLRPDDPLEKKAKNADKANTWSDIDFKAFAEFVKPYTLERTARE 342
Query: 264 TGIEAKLIREVAREFAKAGSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL- 321
+G+ A+ ++ +A +A + W MG QH GV + ++ LL G + + G
Sbjct: 343 SGVPAERLKALAELYADPKRKVVSFWTMGFNQHTRGVWANNLIYNIHLLTGKISEPGNSP 402
Query: 322 YPMRGQNNVQGAA-YMGALSEFLPGYVPLTDSTFRKRVASLWGVE--DIPTERGLYLTEL 378
+ + GQ + G A +G S LP + +T+ R+ +W V I + G + +
Sbjct: 403 FSLTGQPSACGTAREVGTFSHRLPADLVVTNPKHRETAEKIWKVPAGTIQEKVGFHAVQQ 462
Query: 379 WDAILEGEVKALYIMGENPAVSEANVL-KVRKALQKLE-LLVVQDLFLTRTARFAHYILP 436
+ +G + + N + NV+ +V + + ++V D++ T +A+ A ILP
Sbjct: 463 SRMLKDGVLNVYWTQVSNNMQAGPNVMQEVLPGWRNPDNFVIVSDVYPTVSAQAADLILP 522
Query: 437 AAAFCEKEGSYMNSERRIQWSFKVCDPPGEAKPD-WEILSLLGKELDLPGFPYEKVEDIT 495
+A + EKEG++ N+ERR Q+ ++ PGEAK D W+++ + + E
Sbjct: 523 SAMWVEKEGAFGNAERRTQFWHQLVKAPGEAKSDLWQLVEFSKR--------FTTDEVWP 574
Query: 496 EEYFKMFPELAGISVEELKNSNG 518
E PEL G ++ ++ NG
Sbjct: 575 AELLAKAPELKGKTLYDVLFRNG 597
Score = 82.3 bits (200), Expect = 2e-14
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 534 PDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYIS 593
PD KA + A+ P E P+ +YP L T RV+ H++TG MT R P L K + + +VY+
Sbjct: 688 PDKKAIVFALPYEPPAEAPDQDYPFWLATGRVLEHWHTGSMTARVPELYKAVPDALVYMH 747
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKI---SKVKEGVIVVPFHFDANILTNDALNKA 650
DA++ ++ G VKV +RRG I + + +K +G++ VPF FDAN L N A
Sbjct: 748 PEDARQLKLRRGSEVKVVSRRGEIRARVETRGRNKPPQGLVFVPF-FDANKLINKVTLDA 806
Query: 651 GTP 653
P
Sbjct: 807 TDP 809
>sp|P37600|PHSA_SALTY THIOSULFATE REDUCTASE PRECURSOR >gi|2126173|pir||A57143
thiosulfate--dithiol sulfurtransferase (EC 2.8.1.5) phsA
chain - Salmonella typhimurium >gi|755676|gb|AAC36934.1|
(L32188) thiosulfate reductase [Salmonella typhimurium]
Length = 758
Score = 172 bits (432), Expect = 1e-41
Identities = 169/670 (25%), Positives = 310/670 (46%), Gaps = 71/670 (10%)
Query: 11 VCPYCGFGCNL---LIDPKTLKVKPYKGEPNRG-KLCPKGLHALEFVLSKDRLRYPLKKV 66
+C C F C + +++ KT+ ++ P +G ++C +G + V R+ P+K+
Sbjct: 47 LCEMCSFRCPIQAQVVNNKTVFIQGNPSAPQQGTRICARGGSGVSLVNDPQRIVKPMKRT 106
Query: 67 G----SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
G ++ I W A +EIA+K+ IK ++GP ++AF SSK + ++L +A G
Sbjct: 107 GPRGDGEWQVISWQQAYQEIAAKMNAIKAQHGPESVAF--SSKSGSLSSHLFH-LATAFG 163
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDY-I 181
+ N A C A K+ +G + D+ N + ++ +G+N E V + +
Sbjct: 164 SPNTFTHASTCPAGKAIAAKVMMGGDLAM----DIANTRYLVSFGHNLYEGIEVADTHEL 219
Query: 182 LNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
+ A+ KGAK++ D R + AD I PG D+ + A+ +V+I E LYD FV
Sbjct: 220 MTAQEKGAKMVSFDPRLSIFSSKADEWHAIRPGGDLAVLLAMCHVMIDEQLYDASFVERY 279
Query: 242 TVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMW-GMGLTQHVSGVE 300
T GF ++ AVK+ TPE+A + A +I V RE A AI+ G T ++
Sbjct: 280 TSGFEQLAQAVKETTPEWAAAQADVPADVIVRVTRELAACAPHAIVSPGHRATFSQEEID 339
Query: 301 NVIAVIDMALLLGYVGDKGGLYPMRG---QNNVQGAAYMGALSEFLPGYVPLTDSTFRKR 357
+ + +LLG + +GGLY + N + G L++ +P +
Sbjct: 340 MRRMIFTLNVLLGNIEREGGLYQKKNASVYNKLAGEKVAPTLAKLNIKNMPKPTAQRIDL 399
Query: 358 VASLWGVEDIPTERGLYLTELWDAILEG--EVKALYIMGENPAVSEANVLKVRKALQKLE 415
VA + + I G+ + + A+ + +KA + NP + + K +++L+
Sbjct: 400 VAPQF--KYIAAGGGVVQSIIDSALTQKPYPIKAWIMSRHNPFQTVTCRSDLVKTVEQLD 457
Query: 416 LLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMN-SERRIQWSFK--VCDPPGEAKPDWE 472
L+V D++L+ +A +A Y+LP + E++ + S ++ + V +P GEA+P W+
Sbjct: 458 LVVSCDVYLSESAAYADYLLPECTYLERDEEVSDMSGLHPAYALRQQVVEPIGEARPSWQ 517
Query: 473 ILSLLGKELDL-PGFPYEKVEDITEEYFKMFPELAGISVEELKNSN----GIIIPYKRLH 527
I LG++L L +P++ ++ T + +++ + A +EL+ G+ + +
Sbjct: 518 IWKELGEQLGLGQYYPWQDMQ--TRQLYQLNGDHA--LAKELRQKGYLEWGVPLLLREPE 573
Query: 528 TI-----------------------RFQTPDGKARLIA--VEQIMP-WEQP-------NG 554
++ RF++P GK L + +E+++P + P
Sbjct: 574 SVRQFTARYPGAIATDSDNTYGEQLRFKSPSGKIELYSATLEELLPGYGVPRVRDFALKK 633
Query: 555 EYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRR 614
E L +V H T T P L +LM + V++ A++ GIK GD + +E
Sbjct: 634 ENELYFIQGKVAVH--TNGATQYVPLLSELMWDNAVWVHPQTAQEKGIKTGDEIWLENAT 691
Query: 615 GSIVLKAKIS 624
G KA ++
Sbjct: 692 GKEKGKALVT 701
>emb|CAB92217.1| (AL356592) nitrate reductase (fragment). [Streptomyces coelicolor
A3(2)]
Length = 508
Score = 169 bits (423), Expect = 1e-40
Identities = 122/398 (30%), Positives = 195/398 (48%), Gaps = 52/398 (13%)
Query: 291 GLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMGALSEFLPGYVPL 349
G+ Q + V ++ L+ G +G G GL M GQ Q GA + LPG+
Sbjct: 13 GVYQSHQATAAAVQVNNLHLIRGMLGRPGAGLLQMNGQPTAQNTRECGANGD-LPGFRNW 71
Query: 350 TDSTFRKRVASLWGVED--IPT-ERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLK 406
+ +A +W VE IP + +++ +G ++ L+I G NPAVS + +
Sbjct: 72 QNDAHVADLARVWNVEPETIPHFAPPTHAMQIFRYAEQGSLRMLWISGTNPAVSMPELPR 131
Query: 407 VRKALQKLELL-VVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPG 465
+R L + L VVQDL+LT TAR A +LPAA + EK G+ N++R + S K +PPG
Sbjct: 132 IRSILSQERLFTVVQDLYLTETARLADVVLPAATWGEKTGALTNADRTVHLSRKAVEPPG 191
Query: 466 EAKPDWEILSLLGKELDL------PGFPYEKVEDITEEYFKMFP----ELAGISVEELKN 515
EA+PD +I + +D P P++ E E + + + G+S +L++
Sbjct: 192 EARPDLDIFLDYARRMDFRDKDGGPLIPWDGPESAFEAWKRCSAGRPCDYTGLSYAKLRD 251
Query: 516 SNGIIIP--------YKRLHT----------------------------IRFQTPDGKAR 539
++GI P RL+T R PDG+A
Sbjct: 252 TSGIQWPCDDRAPEGTARLYTDGFGWAHPDVCESYGKDLETGASQEVVEYRSLNPDGRAM 311
Query: 540 LIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKK 599
L A + P E+P+ EYP LTT R + H++T T R+P L + V +S DA++
Sbjct: 312 LKAAAYLPPHEEPDEEYPFQLTTGRTLYHFHTRTKTGRAPQLNDAAPDVWVEVSAGDAER 371
Query: 600 YGIKDGDLVKVETRRGSIVLKAKISKVKEGVIVVPFHF 637
G+ +GDLV+V +RRGS+ + +++ ++ G++ VPFH+
Sbjct: 372 LGLGEGDLVEVTSRRGSLRGRLRVTGIRTGLLFVPFHY 409
>dbj|BAB06572.1| (AP001516) formate dehydrogenase [Bacillus halodurans]
Length = 614
Score = 168 bits (420), Expect = 2e-40
Identities = 160/598 (26%), Positives = 261/598 (42%), Gaps = 67/598 (11%)
Query: 64 KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIA-FIASSKVSNEENYLL-QKIARLL 121
+K F I W+ A+ I + I P AI + S + +N + ++ L
Sbjct: 10 EKGSGAFKPISWERALSIIVDRFEAIIASANPTAILPYSYSGTIGIIQNGSMDRRFFHRL 69
Query: 122 GTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYI 181
G ++ +C A A + T+GA V P + +++WG N T+ YI
Sbjct: 70 GAATLERT--ICAAAGTEAFRYTMGASVGLQP-EETRFANLVIVWGSNLVVTNVHQWLYI 126
Query: 182 LNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
L A+++GAK+IVIDV T T R AD+ + I PGTD+ LA + +V+I E L + F+ +
Sbjct: 127 LEARKRGAKVIVIDVERTETARQADWFIQIKPGTDLELALGIQHVLIEEELINGSFIERQ 186
Query: 242 TVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVEN 301
TVGF E+ V Y+ + E++TGI + I+ +AR + I G G H SG +
Sbjct: 187 TVGFRELAAHVATYSLDRVERMTGINKEDIQRLARMYGTEKRSFIRIGNGQQHHHSGGMS 246
Query: 302 VIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGAL-SEFLPGYVPLTDSTFRKRVAS 360
A++ + L G KGG GA Y E+ + D +
Sbjct: 247 TRAILSLPALTGAWEAKGG-----------GAIYFNLKHGEYSSDILHRPDLRTNE---- 291
Query: 361 LWGVEDIPTERGLYLTELWDAILEGE--VKALYIMGENPAVSEANVLKVRKALQKLEL-L 417
ER + + EL +L + + AL++ NPA + KV + L + L +
Sbjct: 292 ---------ERRVNMNELGKVLLSQQEPILALFVYNSNPASVAPDQRKVLQGLARDNLFV 342
Query: 418 VVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSF--KVCDPPGEAKPDWEILS 475
VV + LT TA+FA +LPA F E + Y S W +V P G++K + E+
Sbjct: 343 VVHEQQLTDTAKFADIVLPATTFLEHDDVY-RSYWHPYWQLGRRVISPIGQSKSNTELFR 401
Query: 476 LLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTI------ 529
+L + + D T +F + + S + +G I +K H
Sbjct: 402 MLANAFHFQELCF-RDNDETLMKQAIFGDSSVDSGVWEQFLSGKPIRWKPTHLSAQQIEP 460
Query: 530 ----RFQTPDGKARLIA----------VEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMT 575
++TP GK L + + + +P++Q Y LI++ R
Sbjct: 461 WKIGEYETPSGKIELYSEAMHEAGLPPLPEKIPYKQAAAPYQLIISPSR---------KG 511
Query: 576 MRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISKV-KEGVIV 632
+ S + +PVV +S+ DA + GI DGD V + G + A +S+ ++GVI+
Sbjct: 512 LNSQFIEYAKGKPVVQLSKEDAMREGIYDGDRVCLFNDHGQLTCTANVSEACQQGVII 569
>pir||T35749 probable formate dehydrogenase - Streptomyces coelicolor
>gi|5689897|emb|CAB52060.1| (AL109732) putative formate
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 759
Score = 167 bits (418), Expect = 4e-40
Identities = 156/589 (26%), Positives = 244/589 (40%), Gaps = 54/589 (9%)
Query: 58 RLRYP--LKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQ 115
RL +P L + G+ + + W+ A +A ++ ++ + F S + SNE +L Q
Sbjct: 120 RLTHPVYLPEGGAHYEPVTWERAFGIVAEEIAALESA---DEAVFYTSGRTSNEAAFLYQ 176
Query: 116 KIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHP 175
AR LGTNN+ +C+ +CHE+S AL T+G G + DL I++ G NP HP
Sbjct: 177 LFARELGTNNLPDCSNMCHESSGSALSETIGVGKGSVLLEDLYKSDLIIVAGQNPGTNHP 236
Query: 176 VVMDYILNAKRKGAKIIVIDVRE----------------TTTMRLADYKLMINPGTDITL 219
++ + AK GA+II I+ T L D L I G D L
Sbjct: 237 RMLSALEKAKANGARIISINPLPEAGLERFKNPQTPKGLTAGASLTDLFLQIRLGGDQAL 296
Query: 220 ANALMNVII-SEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREF 278
L +I+ ++G D+ FV T G+ E A + + TG+ I E R
Sbjct: 297 FRLLNKLILETQGAVDEAFVEEHTHGYEEFAAAARAADWDDTLAATGLTRAEIEEALRMV 356
Query: 279 AKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAYMG 337
+ + W MGLTQH V + V++ LL G +G G G+ P+RG +NVQG MG
Sbjct: 357 LDSERTIVCWAMGLTQHKHSVPTIREVVNFLLLRGNIGRPGAGVCPVRGHSNVQGDRTMG 416
Query: 338 ALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENP 397
P ++ + F P E G + A+ +GE K + MG N
Sbjct: 417 IFERPAPAFLDALEKEFGFAP---------PREHGYDVVRAIRALRDGEAKVFFAMGGNF 467
Query: 398 AVSEANVLKVRKALQKLELLVVQDLFLTRTARFA---HYILPAAAFCEKE--------GS 446
+ + A+++ L V L R+ ILP E++ +
Sbjct: 468 VSASPDTEVTEAAMRRARLTVHVSTKLNRSHAVTGARALILPTLGRTERDLQGGGEQFVT 527
Query: 447 YMNSERRIQWSFKVCDP-PGEAKPDWEIL-----SLLGKELDLPGFPYEK-VEDITEEYF 499
+S + S +P G+ + I+ +LG+E P +EK I +
Sbjct: 528 VEDSMGMVHASRGRLEPASGQLLSEPAIVCRLARRVLGEESRTPWEEFEKDYATIRDRIG 587
Query: 500 KMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLI 559
++ P + + + G +P+ RF T GKA A P E P G L+
Sbjct: 588 RVVPGFEDFNA-RVAHPGGFALPHAPRDERRFPTATGKANFTAAPVEFP-ELPEGR--LL 643
Query: 560 LTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLV 608
L T+R YNT + VV ++ DA++ G++DG V
Sbjct: 644 LQTLRSHDQYNTTIYGLDDRYRGIRNGRRVVLVNPEDARRLGVEDGSYV 692
>gb|AAC44462.1| (U60056) CbbBc [Ralstonia eutropha]
Length = 757
Score = 166 bits (417), Expect = 6e-40
Identities = 163/668 (24%), Positives = 281/668 (41%), Gaps = 92/668 (13%)
Query: 58 RLRYPL--KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQ 115
RL +PL + F + W+ A I LR + P+ + F S + SNE YL Q
Sbjct: 113 RLTHPLVYDRATDTFRAVEWEAAFARIGEILRGLS----PDQVEFYTSGRASNEAAYLYQ 168
Query: 116 KIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHP 175
AR GTNN +C+ +CHE + L ++G G T D + + I+ G+NP HP
Sbjct: 169 LFAREYGTNNFPDCSNMCHEPTSVGLPRSIGIGKGTVSLEDFDTCELIISIGHNPGTNHP 228
Query: 176 VVMDYILNAKRKGAKIIVID-VRETTTMRLADYKLMINPGTDIT---------------- 218
+M + A R+ I+V + +RE R AD + M+ T +
Sbjct: 229 RMMGTLHEASRRKVPILVFNPLRERALERFADPQNMVEMATYGSTRIASSYFLVRAGGDA 288
Query: 219 -----LANALMNVIISEG-LYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIR 272
+ AL+++ S+G + D +F+ T GF + ++ EK +G+ +
Sbjct: 289 AAIKGVMKALLDLEASQGNVLDHDFIAVHTEGFEALADDLRSTEWADIEKTSGLTRADLE 348
Query: 273 EVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQ 331
VA +AK+ + + +GMG+TQH G NV + D+ +L G G G G+ P+RG +NVQ
Sbjct: 349 LVAAAYAKSNATIVTYGMGVTQHNEGTANVRLLCDLLMLRGNFGKPGAGICPLRGHSNVQ 408
Query: 332 GAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALY 391
G +G + G++ + TF G P G A+++G+ +AL+
Sbjct: 409 GNRTVGITEKPSAGFLQRIEDTF--------GFSP-PAGHGHDAVNAMQAMIDGKSRALF 459
Query: 392 IMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAH---YILPAAAFCEKE---- 444
+G N AV+ + + A+ KL+L V L RT Y+LP E +
Sbjct: 460 CLGGNFAVALPDPEQCFPAMGKLDLSVHVGTKLNRTHLLVARETYVLPCLGRTELDVQET 519
Query: 445 ------------------------GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKE 480
++ SE I P P E+++
Sbjct: 520 GPQSVTVEDSMSMVHASAGKLAPASEFLRSEPAIVAGIATATLPDSKVPWLELVA----- 574
Query: 481 LDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARL 540
Y+++ D+ E+ F + ++ G +P +++T GKA
Sbjct: 575 ------DYDRIRDLIEKTVPGFEDFNA----RVRVPGGFRMPLPPTER-KWETSSGKAEF 623
Query: 541 IAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKY 600
+ + +Q + + L L T+R YNT M V++++ +D
Sbjct: 624 YVFKGLHEDKQVHADDVLRLVTIRSHDQYNTTIYAMDDRYRGVFGRRDVLFMNPADLAAR 683
Query: 601 GIKDGDLVKVETRRGSIVLK-AKISKVKEGVI---VVPFHFDAN-ILTNDALNK-AGTPE 654
G++ GDLV +ET L+ KI+ ++ + V ++ +AN ++ D +++ +GTP
Sbjct: 684 GLEHGDLVDIETIAAGRQLRFEKITAIEYEIAPGSVAAYYPEANRLVPLDYIDEDSGTPS 743
Query: 655 LKYSSARI 662
K R+
Sbjct: 744 YKSVPVRV 751
>sp|Q10821|YT00_MYCTU HYPOTHETICAL 84.6 KDA PROTEIN RV2900C >gi|7478064|pir||G70926
probable fdhF protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1403421|emb|CAA98338.1| (Z74024) fdhF
[Mycobacterium tuberculosis]
Length = 779
Score = 161 bits (403), Expect = 2e-38
Identities = 160/604 (26%), Positives = 256/604 (41%), Gaps = 63/604 (10%)
Query: 51 EFVLSKD-RLRYPLK-KVGSDFVR-IGWDDAIREIASKLREIKERYGPNAIAFIASSKVS 107
E+ LS+ RL +P+ + G D R I WD A + IA +L + P+ F S + S
Sbjct: 124 EYWLSQQGRLAHPMVLRPGDDHYRPISWDAAYQLIAEQLNGLDS---PDRAVFYTSGRTS 180
Query: 108 NEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWG 167
NE + Q + R GTNN+ +C+ +CHE+S AL ++G G + D+E+ I+I G
Sbjct: 181 NEAAFCYQLLVRSFGTNNLPDCSNMCHESSGAALTDSIGIGKGSVTIGDVEHADLIVIAG 240
Query: 168 YNPAETHPVVMDYILNAKRKGAKIIVID-VRETTTMR----------------LADYKLM 210
NP HP ++ + AK GAKII ++ + E +R +AD +
Sbjct: 241 QNPGTNHPRMLSVLGKAKANGAKIIAVNPLPEAGLIRFKDPQKVNGVVGHGIPIADEFVQ 300
Query: 211 INPGTDITLANALMNVIISE------GLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVT 264
I G D+ L L +++ + D+ FV + GF + + + T
Sbjct: 301 IRLGGDMALFAGLGRLLLEAEERVPGSVVDRSFVDNHCAGFDGYRRRTLQVGLDTVMDAT 360
Query: 265 GIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYP 323
GIE ++ VA + I W MGLTQH V + V ++ LL G +G G G+ P
Sbjct: 361 GIELAQLQRVAAMLMASQRTVICWAMGLTQHAHAVATIGEVTNVLLLRGMIGKPGAGVCP 420
Query: 324 MRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAIL 383
+RG +NVQG MG + ++ D F G+ P G A+
Sbjct: 421 VRGHSNVQGDRTMGIWEKMPEQFLAALDREF--------GITS-PRAHGFDTVAAIRAMR 471
Query: 384 EGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAH----YILPAAA 439
+G V MG N A + + AL++ L V L R + H ILP
Sbjct: 472 DGRVSVFMGMGGNFASATPDTAVTEAALRRCALTVQVSTKLNR-SHLVHGATALILPTLG 530
Query: 440 FCEKEG--------SYMNSERRIQWSFKVCDPPG-EAKPDWEILSLLGKELDLPGFPYEK 490
+++ S +S + S PP + + + +I+ L + L PG P
Sbjct: 531 RTDRDTRNGRKQLVSVEDSMSMVHLSRGSLHPPSDQVRSEVQIICQLARALFGPGHPV-P 589
Query: 491 VEDITEEYFKMFPELAGISV------EELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVE 544
E ++Y + +A + +++ +G +P+ F+T GKA AV
Sbjct: 590 WERFADDYDTIRDAIAAVVPGCDDYNHKVRVPDGFQLPHPPRDAREFRTSTGKAN-FAVN 648
Query: 545 QIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKD 604
+ P G L+L T+R YNT + VV+I+ +D + +G+
Sbjct: 649 PLQWVPVPPGR--LVLQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFINPADIETFGLTA 706
Query: 605 GDLV 608
GD V
Sbjct: 707 GDRV 710
>sp|P31075|PSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN A PRECURSOR (SULFUR REDUCTASE CHAIN A)
>gi|79393|pir||S23457 polysulfide reductase (EC 1.-.-.-)
chain psrA precursor - Wolinella succinogenes
>gi|48526|emb|CAA46176.1| (X65042) gtg start codon
[Wolinella succinogenes]
Length = 763
Score = 161 bits (402), Expect = 3e-38
Identities = 183/697 (26%), Positives = 296/697 (42%), Gaps = 96/697 (13%)
Query: 11 VCPYCGFGCNLLIDPKTLKVKPYKGEPNR----GKLCPKGLHALEFVLSKDRLRYPLKKV 66
+C C C + + K +G P GK+C +G + RL P+ +V
Sbjct: 50 ICEMCTSSCTIEARVEGDKGVFIRGNPKDKSRGGKVCARGGSGFNQLYDPQRLVKPIMRV 109
Query: 67 GS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
G + + WD+A IA KL EIK+++G + +AF A S + +A+ G
Sbjct: 110 GERGEGKWKEVSWDEAYTFIAKKLDEIKQKHGAHTVAFTARSGWNKT---WFHHLAQAYG 166
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYI- 181
+ NI C A A + G + D K I+ G+N E +V+ Y+
Sbjct: 167 SPNIFGHESTCPLAYNMAGRDVFGGSMNR----DFAKAKYIINMGHNVFEG--IVISYVR 220
Query: 182 --LNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+ A GAK++ ++ R + + A I PG D+ M+ +I E LYDK+FV+
Sbjct: 221 QYMEAIENGAKVVTLEPRLSVMAQKASEWHAIKPGHDLPFVLGFMHTLIFENLYDKKFVQ 280
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM-WGMGLTQHVSG 298
GF E+K +++ TPE I A I+ +AREFAKA AI +G +T
Sbjct: 281 KYCTGFEELKASIEPCTPEKMALECDIPADTIKRLAREFAKAAPKAIFDFGHRVTFTPQE 340
Query: 299 VENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGY-VPLTDSTFRKR 357
+E A++ + L+G + GG+Y G+N ++G G P T + +
Sbjct: 341 LELRRAMMMVNALVGNIERDGGMY--FGKNASFYNQFLGEEDPKAKGLKKPKTPAYPKVE 398
Query: 358 VASLWGVEDIPTERGLYLTELWDAILEGEVKAL--------------YIMGENPAVSEAN 403
V + + + E +L + I+ KA +I+ NP +++ N
Sbjct: 399 VPRIDRIGEKDGE--FFLANKGEGIVSLVPKATLNELPGVPCKIHGWFIVRNNPVMTQTN 456
Query: 404 VLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSF----- 458
V KAL+ ++L+V D+ ++ TA FA +LP + E++ + + SF
Sbjct: 457 ADTVIKALKSMDLVVCVDIQVSDTAWFADVVLPDTTYLERDEEFTAGGGK-NPSFGIGRQ 515
Query: 459 KVCDPPGEAKPDWEILSLLGKELDL-PGFPYEKVEDI----------------------- 494
KV +P G+AKP W+I L +++ L FP++ +ED
Sbjct: 516 KVVEPLGDAKPGWKIAKELSEKMGLGEYFPWKDIEDYRLQQVDGDLDLLAKLKKDGSASF 575
Query: 495 -----------TEEYFKMFPELAGISVEELKNSNGII-IPYK-RLHTIRFQTPDGKARLI 541
E+ K FP A N G+I P K +L + + + GK L
Sbjct: 576 GVPLMLQEKKSVAEFVKKFPGAA-----SKVNEEGLIDFPKKIQLFSPKLEEVSGKGGL- 629
Query: 542 AVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYG 601
E E+ + T VR SH TG + P L LM ++I A K G
Sbjct: 630 GYEPFKYKEEDELYFVQGKTPVRSNSH--TGNV----PWLNNLMEYDAIWIHPKTASKLG 683
Query: 602 IKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHF 637
IK+GD +++ + S KA I++ V+E + F F
Sbjct: 684 IKNGDAIELYNKFSSQKSKALITEGVREDTLFGYFGF 720
>pir||E64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A1 precursor,
anaerobic - Escherichia coli >gi|1742610|dbj|BAA15311.1|
(D90801) Anaerobic dimethyl sulfoxide reductase chain A
precursor (EC 1.-.-.-) (DMSO reductase). [Escherichia
coli] >gi|1742621|dbj|BAA15321.1| (D90802) Anaerobic
dimethyl sulfoxide reductase chain A precursor (EC
1.-.-.-) (DMSO reductase). [Escherichia coli]
>gi|1787870|gb|AAC74659.1| (AE000254) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 808
Score = 160 bits (400), Expect = 6e-38
Identities = 176/673 (26%), Positives = 291/673 (43%), Gaps = 105/673 (15%)
Query: 41 KLCPKGLHALEFVLSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPN 96
+ C +G + DRL YP+K+VG F RI WD+A+ IAS L++ E+YG
Sbjct: 94 RACLRGRSIRRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNE 153
Query: 97 AIAFIASSKV-------SNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGV 149
A+ SS + S+ ++++ G +++ A+ T G+
Sbjct: 154 AVYIQYSSGIVGGNMTRSSPSASAVKRLMNCYG-GSLNQYGSYSTAQISCAMPYTYGSN- 211
Query: 150 QTNPYSDLENFKAIMIWGYNPAETHPVV--MDYILNAKRK--GAKIIVIDVRETTTMR-L 204
N +D+EN K ++++G NPAET + Y+L R+ AK+IVID R T T
Sbjct: 212 DGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGR 271
Query: 205 ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY- 255
D L I PGTD L + V+I+E L D+ F+ VG+ E + K Y
Sbjct: 272 EDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYI 331
Query: 256 ----------TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAV 305
TP++A ++TGI I ++ARE A I G G + +G A+
Sbjct: 332 LGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAI 391
Query: 306 IDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVE 365
+ +L G VG G G + + + Y + +P+ D+ + ++ +
Sbjct: 392 AMLPILTGNVGISG------GNSGARESTYTITIER-----LPVLDNPVKTSISCFSWTD 440
Query: 366 DIPTERGLYLTELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLEL 416
I + G +T + D + L+ +K ++ N V++ +++ K + LQ K E+
Sbjct: 441 AI--DHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEM 498
Query: 417 LVVQDLFLTRTARFAHYILPAAAFCEKE----GSYMNSERRIQWSFKVCDPPGEAKPDWE 472
+VV + F+T +A++A +LP E+E Y + + + V E KP +
Sbjct: 499 IVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYW 558
Query: 473 ILSLLGKELDLPGFPYEKVEDITEE------YFKM---------FPELAGISVEELKNSN 517
ILS + K L P + E T+E Y KM + EL + + + K+ N
Sbjct: 559 ILSEVAKRLG-PDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPN 617
Query: 518 GIIIPYKRL----HTIRFQTPDGKARLIA---VEQIMPWEQPNGE----YPLILTTVRVM 566
G + YK +TP GK + + E WE E P+ +T
Sbjct: 618 GHFVAYKAFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGW 677
Query: 567 S--------------HYNT-GEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVE 611
+ HY + T + L+K V+I+ DA+K GI +GD+V+V
Sbjct: 678 NSPERRTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVF 737
Query: 612 TRRGSIVLKAKIS 624
RG + L AK++
Sbjct: 738 NHRGEVRLPAKVT 750
>pir||I40449 hypothetical protein 6 (replication origin region) - Bacillus
subtilis (fragment) >gi|40035|emb|CAA44413.1| (X62539)
unnamed protein product [Bacillus subtilis]
Length = 425
Score = 157 bits (394), Expect = 3e-37
Identities = 131/451 (29%), Positives = 202/451 (44%), Gaps = 42/451 (9%)
Query: 6 RVIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNR----GKLCPKGLHALEFVLSKDRLR 60
+V + CP C C L+ KV G+PN GK+C +G S DRLR
Sbjct: 3 KVHQSACPLNCWDSCGFLVTVDDGKVTKVDGDPNHPITEGKICGRGRMLETKTNSPDRLR 62
Query: 61 YPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL 120
YP+KK +FVRI W+ A+ EIA KLREIKE A+ + S +N N LL+ + +
Sbjct: 63 YPMKKQNGEFVRISWEQALDEIADKLREIKETSETTAV--LHSHDYAN--NGLLKALDQR 118
Query: 121 L-----GTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHP 175
G I +C + + A G P D+ N K +++WG N + T+
Sbjct: 119 FFNGYGGVTEI--VGSICWGSGIEAQSWDFGRSYGHGPL-DIYNSKHVVVWGRNVSRTNM 175
Query: 176 VVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDK 235
+ ++ K+KGA I VID T +LAD + + PG D LA A++ V+I G D+
Sbjct: 176 HLYHHLQQVKKKGATITVIDPIFNPTAKLADRYISVKPGMDGWLAAAVLKVLIEMGRTDE 235
Query: 236 EFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQH 295
F+ +VGF +VK +K + E T + + +A +A G + G+G+ ++
Sbjct: 236 TFISEHSVGFDDVKELLKTVSLEEFIVKTETSMEELEYLAGLYAD-GPVSTFMGLGMQRY 294
Query: 296 VSGVENVIAVIDMALLLGYVGDKGGLYPMRGQN--NVQGAAYMGALSEFLPGYVPLTDST 353
+G + + + G VG KGG G N NVQ LP T
Sbjct: 295 KNGGGTIRWIDALVAASGNVGIKGG-----GANFGNVQIGESFAKTKLTLPEL-----KT 344
Query: 354 FRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQK 413
+ + + E++ T + ++ + + NP N KVR+A +K
Sbjct: 345 TSRSFSMMTQAEEVLT------------AADPAIEMIIVTCGNPLTQVPNTNKVRQAFEK 392
Query: 414 LELLVVQDLFLTRTARFAHYILPAAAFCEKE 444
+ + V D +T TA Y+LP A E+E
Sbjct: 393 VPMTVAIDSIMTDTAELCDYVLPTATVFEEE 423
>pir||S03785 dimethylsulfoxide reductase (EC 1.8.-.-) chain A precursor,
anaerobic - Escherichia coli >gi|145755|gb|AAA83843.1|
(J03412) anaerobic dimethyl sulfoxide reductase
[Escherichia coli] >gi|1651421|dbj|BAA35626.1| (D90727)
Dimethylsulfoxide reductase chain a [Escherichia coli]
>gi|1787121|gb|AAC73980.1| (AE000191) anaerobic dimethyl
sulfoxide reductase subunit A [Escherichia coli K12]
Length = 785
Score = 157 bits (392), Expect = 5e-37
Identities = 183/735 (24%), Positives = 309/735 (41%), Gaps = 128/735 (17%)
Query: 5 DRVIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNRG----------KLCPKGLHALEFV 53
++VI C CG C L + ++K Y N G + C +G V
Sbjct: 27 EKVIWSACTVNCGSRCPLRMHVVDGEIK-YVETDNTGDDNYDGLHQVRACLRGRSMRRRV 85
Query: 54 LSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNE 109
+ DRL+YP+K+VG+ F RI W++A IA+ ++ + + YG +I +
Sbjct: 86 YNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGG 145
Query: 110 E--------NYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFK 161
N L+ ++ G +++ L T G N SD+EN K
Sbjct: 146 TMTRSWPPGNTLVARLMNCCG-GYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSK 204
Query: 162 AIMIWGYNPAETHPV---VMDYILNAKRKG-AKIIVIDVRETTT-MRLADYKLMINPGTD 216
++++G NP ET V Y+ A++K A++I+ID R T T D + I PGTD
Sbjct: 205 LVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTD 264
Query: 217 ITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY-----------TP 257
L N L V+I+E L D+ F+ VG+ E + K Y TP
Sbjct: 265 AALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTP 324
Query: 258 EYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGD 317
E+A ++TG+ A I ++ARE I G G +H +G A+ +A+L G VG
Sbjct: 325 EWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGI 384
Query: 318 KGGLYPMRGQNNVQGAAYMGALSEFLPGY-VPLTDSTFRKRVASLWGVEDIPTERGLYLT 376
GG A G+ S LP +P ++ + ++ + I ERG +T
Sbjct: 385 NGG----------NSGAREGSYS--LPFVRMPTLENPIQTSISMFMWTDAI--ERGPEMT 430
Query: 377 ELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLELLVVQDLFLTRT 427
L D + L+ +K ++ N +++ + + + + LQ K EL+VV D +T +
Sbjct: 431 ALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSS 490
Query: 428 ARFAHYILPAAAFCEKEGSYMNSE----RRIQWSFKVCDPPGEAKPDWEILSLLGKELDL 483
A++A +LP E+ +++ + ++ +V P E K +E+ S L K L
Sbjct: 491 AKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRL-- 548
Query: 484 PGFPYEKVEDITEEYF---------------KMFPELAGISVEELKNSNGIIIPYKRL-- 526
G + E T+E + F E + + ++ G + YK
Sbjct: 549 -GVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFRE 607
Query: 527 --HTIRFQTPDGKARLIA---VEQIMPWEQPNG----------------------EYPLI 559
TP GK + + + WE P G +YPL
Sbjct: 608 DPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQ 667
Query: 560 LTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVL 619
LT S ++ T + ++K ++I+ DA+K GI +GD V++ RG + +
Sbjct: 668 LTGFHYKSRVHS---TYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHI 724
Query: 620 KAKIS-KVKEGVIVV 633
+AK++ ++ GV+ +
Sbjct: 725 EAKVTPRMMPGVVAL 739
>sp|P18775|DMSA_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN A PRECURSOR (DMSO
REDUCTASE)
Length = 814
Score = 157 bits (392), Expect = 5e-37
Identities = 183/735 (24%), Positives = 309/735 (41%), Gaps = 128/735 (17%)
Query: 5 DRVIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNRG----------KLCPKGLHALEFV 53
++VI C CG C L + ++K Y N G + C +G V
Sbjct: 56 EKVIWSACTVNCGSRCPLRMHVVDGEIK-YVETDNTGDDNYDGLHQVRACLRGRSMRRRV 114
Query: 54 LSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNE 109
+ DRL+YP+K+VG+ F RI W++A IA+ ++ + + YG +I +
Sbjct: 115 YNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGG 174
Query: 110 E--------NYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFK 161
N L+ ++ G +++ L T G N SD+EN K
Sbjct: 175 TMTRSWPPGNTLVARLMNCCG-GYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSK 233
Query: 162 AIMIWGYNPAETHPV---VMDYILNAKRKG-AKIIVIDVRETTT-MRLADYKLMINPGTD 216
++++G NP ET V Y+ A++K A++I+ID R T T D + I PGTD
Sbjct: 234 LVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTD 293
Query: 217 ITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY-----------TP 257
L N L V+I+E L D+ F+ VG+ E + K Y TP
Sbjct: 294 AALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTP 353
Query: 258 EYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGD 317
E+A ++TG+ A I ++ARE I G G +H +G A+ +A+L G VG
Sbjct: 354 EWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGI 413
Query: 318 KGGLYPMRGQNNVQGAAYMGALSEFLPGY-VPLTDSTFRKRVASLWGVEDIPTERGLYLT 376
GG A G+ S LP +P ++ + ++ + I ERG +T
Sbjct: 414 NGG----------NSGAREGSYS--LPFVRMPTLENPIQTSISMFMWTDAI--ERGPEMT 459
Query: 377 ELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLELLVVQDLFLTRT 427
L D + L+ +K ++ N +++ + + + + LQ K EL+VV D +T +
Sbjct: 460 ALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSS 519
Query: 428 ARFAHYILPAAAFCEKEGSYMNSE----RRIQWSFKVCDPPGEAKPDWEILSLLGKELDL 483
A++A +LP E+ +++ + ++ +V P E K +E+ S L K L
Sbjct: 520 AKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRL-- 577
Query: 484 PGFPYEKVEDITEEYF---------------KMFPELAGISVEELKNSNGIIIPYKRL-- 526
G + E T+E + F E + + ++ G + YK
Sbjct: 578 -GVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFRE 636
Query: 527 --HTIRFQTPDGKARLIA---VEQIMPWEQPNG----------------------EYPLI 559
TP GK + + + WE P G +YPL
Sbjct: 637 DPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQ 696
Query: 560 LTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVL 619
LT S ++ T + ++K ++I+ DA+K GI +GD V++ RG + +
Sbjct: 697 LTGFHYKSRVHS---TYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHI 753
Query: 620 KAKIS-KVKEGVIVV 633
+AK++ ++ GV+ +
Sbjct: 754 EAKVTPRMMPGVVAL 768
>gb|AAD39508.1| (AF146729) formate dehydrogenase H [Salmonella typhimurium]
Length = 202
Score = 151 bits (378), Expect = 2e-35
Identities = 80/197 (40%), Positives = 127/197 (63%), Gaps = 13/197 (6%)
Query: 11 VCPYCGFGC--NLLIDP-KTLKVKPYKGEPNRGKLCPKGLHALEFV----LSKDRLRYPL 63
VCPYC GC NL++D K ++ + +G+ N+G LC KG + +F+ + RL+ P+
Sbjct: 7 VCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPM 66
Query: 64 --KKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSK-VSNEENYLLQKIAR- 119
++ G + WD+A+ +A +L IK +YGP+AI SS+ NE NY++QK AR
Sbjct: 67 IRRQRGGKLESVSWDEALNYVAERLSAIKAKYGPDAIQTTGSSRGTGNETNYVMQKFARA 126
Query: 120 LLGTNNIDNCARLC-HEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVM 178
++GTNN+D CAR+ H SV L ++G G +N ++++N + ++GYNPA++HP+V
Sbjct: 127 VIGTNNVDCCARV-UHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVA 185
Query: 179 DYILNAKRKGAKIIVID 195
++++NAKR GAKIIV D
Sbjct: 186 NHVINAKRNGAKIIVCD 202
>pir||D83205 probable oxidoreductase PA3534 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949683|gb|AAG06922.1|AE004773_11
(AE004773) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 702
Score = 143 bits (358), Expect = 5e-33
Identities = 136/493 (27%), Positives = 218/493 (43%), Gaps = 57/493 (11%)
Query: 12 CPYCGFGCNLLIDPKT-----LKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYP 62
C C C L I+ ++ +++ KG+P +RG +CPK + + DRLR P
Sbjct: 10 CHLCEAICGLAIETESDEGGVPRIRSIKGDPQDSFSRGHVCPKAVALQDIQDDPDRLRQP 69
Query: 63 LKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIA-FIASSKVSN-----EENYLLQK 116
L++VGS++ IGWD+A +AS+L EI+ER+G +A+A + + V N NY L
Sbjct: 70 LRRVGSEWQPIGWDEAFALVASRLGEIRERHGNDAVAVYQGNPSVHNYGLMTHSNYFL-- 127
Query: 117 IARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAE---- 172
LL T N + A + H + + P D+++ +++ G NP
Sbjct: 128 --GLLKTRNRFS-ATSVDQLPHHLVSQQMYGHGLLIPIPDIDHTDFMLVLGGNPLASNGS 184
Query: 173 --THPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISE 230
T P V + K +G +++V+D R + T +AD L I PG D L ++N + E
Sbjct: 185 IMTVPDVEKRLKALKARGGRLVVVDPRRSETAAIADRHLFIRPGQDAALLLGILNTLFEE 244
Query: 231 GLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGM 290
L G V+ AV + E G+ A+ IR++AR+FA A M
Sbjct: 245 NL--GRPTPLPVDGLERVREAVAVFDAESMSARCGVPAESIRQLARDFAAAERAVCYGRM 302
Query: 291 GLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLT 350
G++ G V + L+ G + GG ++ + G
Sbjct: 303 GVSTQAFGTLCQWLVQLINLVTGNLDRVGGALCTSPALDLVASTSGGHFGR--------- 353
Query: 351 DSTFRKRVASL--WGVEDIPTERGLYLTELWDAIL---EGEVKALYIMGENPAVSEANVL 405
+R RV+ L +G E L + L + IL EG+V+AL + NP +S N
Sbjct: 354 ---WRSRVSGLPEYGGE-------LPVAALAEEILGEGEGQVRALVTVAGNPVLSTPNGR 403
Query: 406 KVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEG-----SYMNSERRIQWSFKV 460
++ +AL LE ++ DL++ T R+A ILP A E + + +++ V
Sbjct: 404 RLEQALDGLEFMLSIDLYINETTRYADLILPPTAPLEHDHYDTTFNVFAVRNVTRFNEAV 463
Query: 461 CDPPGEAKPDWEI 473
P A DWEI
Sbjct: 464 LPRPEGALHDWEI 476
>gb|AAD37319.1|AF135170_10 (AF135170) dimethyl sulfoxide reductase subunit A [Yersinia pestis]
Length = 823
Score = 143 bits (358), Expect = 5e-33
Identities = 174/690 (25%), Positives = 292/690 (42%), Gaps = 120/690 (17%)
Query: 41 KLCPKGLHALEFVLSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPN 96
+ C +G V + DRL+YP+K++G+ F RI W++A IA ++ I + YG
Sbjct: 111 RACLRGRSMRRRVYNPDRLKYPMKRIGARGEGKFKRISWEEAFETIAGSMQNIIKEYGNE 170
Query: 97 AIAF-IASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHA-------LKMTLGAG 148
AI + + A LL ++ C ++ ++ L T G
Sbjct: 171 AIYLNYGTGTIGGTMTRSWPPGATLLA-RLMNCCGGYLNQYGDYSTAQIAAGLNYTYGGW 229
Query: 149 VQTNPYSDLENFKAIMIWGYNPAETHPV---VMDYILNAKRKG-AKIIVIDVRETTTMR- 203
N SD+EN K ++++G NPAET V Y+ A+ K AK+IVID R T T
Sbjct: 230 ADGNSPSDIENSKLVVLFGNNPAETRMSGGGVTYYLEQAREKSNAKMIVIDPRYTDTAAG 289
Query: 204 LADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMA--------VKKY 255
D + + PGTD LA+AL V+I+E L D+ F+ VG+ E + K Y
Sbjct: 290 REDEWIPLRPGTDAALASALAYVMITENLVDQPFLDQYCVGYDEKTLPEGAPENSHYKAY 349
Query: 256 -----------TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIA 304
TP++A +TGI A I + RE I G G +H +G A
Sbjct: 350 ILGQGADKTAKTPQWAAAITGIPAAKIITLGREIGSVKPAYISQGWGPQRHSNGENTSRA 409
Query: 305 VIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGY-VPLTDSTFRKRVASLWG 363
+ +A+L G VG GG A G+ S LP +P ++ + ++
Sbjct: 410 IAMLAILTGNVGINGG----------NSGAREGSYS--LPFVRMPTFENPVKTSISMFLW 457
Query: 364 VEDIPTERGLYLTELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KL 414
+ I ERG +T D + L+ +K ++ N V++ + + + LQ K
Sbjct: 458 TDAI--ERGPEMTATRDGVQGKDKLDVPIKFIWNYASNCLVNQHSEINRTHDILQDDKKC 515
Query: 415 ELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSE----RRIQWSFKVCDPPGEAKPD 470
E++VV D +T +A +A ILP E+ +++ + ++ +V P E K
Sbjct: 516 EMIVVIDNHMTSSAEYADIILPDCTASEQMDFCLDASSGNMAYVIFADQVIKPRFECKNI 575
Query: 471 WEILSLLGKELDLPGFPYEKVEDIT-EEYFKMFPELAGISVEEL--------------KN 515
++I S L + + G + E T EE+ + + + ++ EL ++
Sbjct: 576 YDITSGLARHM---GVEQKFTEGRTQEEWMRHLYQQSQAAIPELPSFEDFRAQGMFKKRD 632
Query: 516 SNGIIIPYKRLHT----IRFQTPDGKARLIA---VEQIMPWEQPNG-------------- 554
G + Y T TP GK + + E WE
Sbjct: 633 PAGHHVAYHDFRTDPVANPLSTPSGKIEIYSAALAEIAATWELQKDDVIDPLPVYAAGFE 692
Query: 555 --------EYPLILT--TVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKD 604
+YPL LT + +H G + + S ++ M +I+ DA++ GI +
Sbjct: 693 SHVDPLIEQYPLQLTGFHYKARTHSTYGNVDVLKASCLQEM-----WINPMDAERRGISN 747
Query: 605 GDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
GD+V++ RG + + AK++ ++ GV+ +
Sbjct: 748 GDMVRIFNGRGEVQINAKVTPRMMPGVVAL 777
>gb|AAB06233.1| (U26665) dimethyl sulphoxide reductase subunit A [Haemophilus
influenzae]
Length = 806
Score = 141 bits (352), Expect = 2e-32
Identities = 181/734 (24%), Positives = 309/734 (41%), Gaps = 125/734 (17%)
Query: 5 DRVIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNRG----------KLCPKGLHALEFV 53
+R++ C CG C L + K ++ Y N G + C +G V
Sbjct: 47 ERIVWSACTVNCGSRCPLRMHVKDNRIT-YVETDNTGTETYNLDHQVRACLRGRSMRRRV 105
Query: 54 LSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFI-------- 101
+ DRL+YP+K++G F RI WD+A+ EIA L+ ++YG +I
Sbjct: 106 YNPDRLKYPMKRIGKRGEGKFKRISWDEALTEIAYALKRNIKKYGNESIYLNYGTGTLGG 165
Query: 102 ASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAG-VQTNPYSDLENF 160
+K + ++ + +G +++ L T G G N +D+EN
Sbjct: 166 TMAKSWPPASTMIARFMNCIG-GYLNHYGDYSTAQIAVGLDYTYGGGWALGNGMADIENT 224
Query: 161 KAIMIWGYNPAETHPV---VMDYILNAK-RKGAKIIVIDVRETTT-MRLADYKLMINPGT 215
K I+++G NPAET + I AK R AK+I+ID R T D + I PGT
Sbjct: 225 KLIVLFGNNPAETRMSGGGLTYCIEQAKARSNAKMIIIDPRYNDTGAGREDEWIPIRPGT 284
Query: 216 DITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY-----------T 256
D L AL V+I E L D+ F+ VG+ E + K Y T
Sbjct: 285 DAALVAALAYVMIQENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGYGNDGIAKT 344
Query: 257 PEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVG 316
PE+A K+TGI A+ I ++ARE I G G + +G A+ + +L G VG
Sbjct: 345 PEWAAKITGIPAERIIKLAREIGSTKPAFISQGWGPQRRSNGELISRAIAMLPILTGNVG 404
Query: 317 DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLT 376
G G + +AY +P + + + G + I RG +T
Sbjct: 405 IHG------GNTGARESAYSIPFVR-----MPTLKNPMKASIPMFLGTDAI--IRGTEMT 451
Query: 377 ELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLELLVVQDLFLTRT 427
L D I L +K ++ N +++ A + + LQ + E+++ D +T T
Sbjct: 452 ALTDGIRGVDKLSPPIKVIWNYASNCLINQHAQINRTHDILQDDTQCEMIITIDNHMTST 511
Query: 428 ARFAHYILPAAAFCEKE----GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG----- 478
A+++ +LP E+ +++++ + ++ +V P E +P +++LS L
Sbjct: 512 AKYSDILLPDCPTSEQMDFALDAFVSNMAYVIFADQVIKPSFECRPIYDMLSDLAEKMGV 571
Query: 479 KELDLPGFPYEK-VEDITEEYFKMFPELAGISVEELK--------NSNGIIIPYK----- 524
KE G E+ + I E+ + PEL + EE + + NG + YK
Sbjct: 572 KEKFTEGRTQEEWLRHIYEQSREKLPELP--TFEEFRQQGIFKKVDPNGFKVAYKDFRDN 629
Query: 525 -RLHTIRFQTPDGK-----ARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEM---- 574
H ++ TP GK +RL + + + + +PL + + HY M
Sbjct: 630 PEAHPLK--TPSGKIEIYSSRLAEIAKTWKLAEDDVIHPLPI-HAQSFEHYGDPLMEKYP 686
Query: 575 --------------TMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLK 620
T + ++K + V+++ DAK IK+GD++++ RG + +
Sbjct: 687 LQLSGFHYKARTHSTYGNVDVLKAANPQEVWMNPIDAKPRNIKNGDMIRIFNDRGEVHIN 746
Query: 621 AKIS-KVKEGVIVV 633
KI+ ++ GV+ +
Sbjct: 747 VKITPRIIPGVVAL 760
>pir||B69076 catalytic subunit of nitrate reductase (flp) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622690|gb|AAB86041.1| (AE000917) catalytic subunit
of nitrate reductase (flp) [Methanobacterium
thermoautotrophicum]
Length = 666
Score = 141 bits (352), Expect = 2e-32
Identities = 148/615 (24%), Positives = 260/615 (42%), Gaps = 53/615 (8%)
Query: 15 CGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPK-GLHALEFVLSKDRLRYPLKKVGSD 69
C C L ++ KV +G RG +C + + + S R+ PLK+ G
Sbjct: 11 CPGSCGLTVNVSRGKVNSIEGSSIHPHTRGFICKNTARYHVRRLYSDRRVLKPLKRDGRQ 70
Query: 70 FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNIDNC 129
+ I WD+A+ I+ KL E + +G +I + L ++ L+G +
Sbjct: 71 WKTISWDEALHVISDKLNECMDEHGAESIVYYQGFGARTALRLLNRRFFNLIGATTLRGT 130
Query: 130 ARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRKGA 189
LC A++ A G + +P SD N + I IWG NPA T + I A++ G
Sbjct: 131 --LCGGAAIAAQSKDFGRRLSHDP-SDHLNSRNIFIWGRNPAVTDINLWRIIKRAQKHGT 187
Query: 190 KIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVK 249
++I ID T T +D I G D+ LA A+ +I++E L+D F+ F
Sbjct: 188 RVITIDPIRTQTAVKSDIHCQIEAGKDLYLAIAMAKIIMAEELHDSGFIEKHAENFDSYI 247
Query: 250 MAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMA 309
+ ++ +++G+ K+I ++A ++ G +I+ G GL ++ + + +A
Sbjct: 248 EILDEFNLNQLSELSGVPLKIISKLAHLYSD-GPSSIILGWGLQRYFNSYMACRFIDALA 306
Query: 310 LLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVA-SLWGVEDIP 368
+ GY+G GG G GA E V L + ++V+ L+G E +
Sbjct: 307 AISGYIGVSGG-------GVSSGFDEYGAFDE----SVTLEGAGNGRKVSMPLFGREIVN 355
Query: 369 TERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTA 428
V ++I NP N ++ AL++++ +V+ DLFL TA
Sbjct: 356 MN-------------SPTVNCVFITAGNPVTLGPNSIQTLNALREVDFVVMVDLFLNDTA 402
Query: 429 RFAHYILPAAAFCEKE---GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKEL---D 482
A LPA F E+ GSY + P GE+ ++ IL L + + D
Sbjct: 403 HTADLFLPATTFLEETDLVGSY--GHPYVSPVNAAVKPLGESHSEFWILQRLSEIMGFAD 460
Query: 483 LPGFPYEKVEDITEEYFKMFPELAGISVEEL--KNSNGIIIPYKRLHTIRFQTPDGKARL 540
+ G E +E I + + GI + +L K P F T +G+ L
Sbjct: 461 MEGTRMEWLEIIASKVL----DYHGIEICDLLEKPYRSPGFPPVPFEGPLFYTDNGRFNL 516
Query: 541 IAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKY 600
+ ++ EQ +G +P ++R+++ + + P+ K + E +Y++ +
Sbjct: 517 PS-DRPYEMEQHDGAHP--ENSIRLLTVMSPQWVGSVEPTFHKGLVE--IYLNPGTLSQL 571
Query: 601 GIKDGDLVKVETRRG 615
G DG++ E+ G
Sbjct: 572 GFNDGEISVAESNAG 586
>sp|P45004|DMSA_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN A PRECURSOR (DMSO
REDUCTASE) >gi|1073844|pir||G64109 dimethylsulfoxide
reductase (EC 1.8.-.-) chain A precursor, anaerobic -
Haemophilus influenzae (strain Rd KW20)
>gi|1574081|gb|AAC22706.1| (U32785) anaerobic dimethyl
sulfoxide reductase, chain A (dmsA) [Haemophilus
influenzae Rd]
Length = 806
Score = 141 bits (351), Expect = 3e-32
Identities = 182/734 (24%), Positives = 307/734 (41%), Gaps = 125/734 (17%)
Query: 5 DRVIRVVCPY-CGFGCNLLIDPKTLKVKPYKGEPNRG----------KLCPKGLHALEFV 53
+R++ C CG C L + K ++ Y N G + C +G V
Sbjct: 47 ERIVWSACTVNCGSRCPLRMHVKDNRIT-YVETDNTGTETYNLDHQVRACLRGRSMRRRV 105
Query: 54 LSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFI-------- 101
+ DRL+YP+K++G F RI WD+A+ EIA L+ ++YG +I
Sbjct: 106 YNPDRLKYPMKRIGKRGEGKFKRISWDEALTEIADALKRNIKKYGNESIYLNYGTGTLGG 165
Query: 102 ASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAG-VQTNPYSDLENF 160
+K + ++ + +G +++ L T G G N +D+EN
Sbjct: 166 TMAKSWPPASTMIARFMNCIG-GYLNHYGDYSTAQIAVGLDYTYGGGWALGNGMADIENT 224
Query: 161 KAIMIWGYNPAETHPV---VMDYILNAK-RKGAKIIVIDVRETTT-MRLADYKLMINPGT 215
K I+++G NPAET + I AK R AK+I+ID R T D + I PGT
Sbjct: 225 KLIVLFGNNPAETRMSGGGLTYCIEQAKARSNAKMIIIDPRYNDTGAGREDEWIPIRPGT 284
Query: 216 DITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY-----------T 256
D L AL V+I E L D+ F+ VG+ E + K Y T
Sbjct: 285 DAALVAALAYVMIQENLVDQPFLDKYCVGYDEKTLPTDAPKNGHYKAYILGYGNDGIAKT 344
Query: 257 PEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVG 316
PE+A K+TGI A+ I ++ARE I G G + +G A+ + +L G VG
Sbjct: 345 PEWAAKITGIPAERIIKLAREIGSTKPAFISQGWGPQRRSNGELISRAIAMLPILTGNVG 404
Query: 317 DKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLT 376
GG R M L + +P+ LW I RG +T
Sbjct: 405 IHGGNTGARESAYSIPFVRMPTLKNPVKASIPM----------FLWTDAII---RGTEMT 451
Query: 377 ELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLELLVVQDLFLTRT 427
L D I L +K ++ N +++ A + + LQ + E+++ D +T T
Sbjct: 452 ALTDGIRGVDKLSSPIKVIWNYASNCLINQHAQINRTHDILQDDTQCEMIITIDNHMTST 511
Query: 428 ARFAHYILPAAAFCEKE----GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLG----- 478
A+++ +LP E+ +++++ + ++ +V P E +P +++LS L
Sbjct: 512 AKYSDILLPDCTTSEQMDFALDAFVSNMAYVIFADQVIKPSFECRPIYDMLSDLAEKMGV 571
Query: 479 KELDLPGFPYEK-VEDITEEYFKMFPELAGISVEELK--------NSNGIIIPYK----- 524
KE G E+ + I E+ + PEL + EE + + NG + YK
Sbjct: 572 KEKFTEGRTQEEWLRHIYEQSREKLPELP--TFEEFRQQGIFKKVDPNGFKVAYKDFRDN 629
Query: 525 -RLHTIRFQTPDGK-----ARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEM---- 574
H ++ TP GK +RL + + + + +PL + + HY M
Sbjct: 630 PEAHPLK--TPSGKIEIYSSRLAEIAKTWKLAEDDVIHPLPI-HAQSFEHYGDPLMEKYP 686
Query: 575 --------------TMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLK 620
T + ++K + V+++ DA+ IK+GD++++ RG + +
Sbjct: 687 LQLSGFHYKARTHSTYGNVDVLKAANPQEVWMNPIDAEPRNIKNGDMIRIFNDRGEVHIN 746
Query: 621 AKIS-KVKEGVIVV 633
KI+ ++ GV+ +
Sbjct: 747 VKITPRIIPGVVAL 760
>pir||F64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A2 precursor,
anaerobic - Escherichia coli >gi|1742611|dbj|BAA15312.1|
(D90801) Anaerobic dimethyl sulfoxide reductase chain A
precursor (EC 1.-.-.-) (DMSO reductase). [Escherichia
coli] >gi|1742622|dbj|BAA15322.1| (D90802) Anaerobic
dimethyl sulfoxide reductase chain A precursor (EC
1.-.-.-) (DMSO reductase). [Escherichia coli]
>gi|1787871|gb|AAC74660.1| (AE000254) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 808
Score = 140 bits (349), Expect = 5e-32
Identities = 171/690 (24%), Positives = 294/690 (41%), Gaps = 124/690 (17%)
Query: 41 KLCPKGLHALEFVLSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPN 96
+ C +G + DRL+YP+K+VG F RI WD+A+ I+ LR I + YG
Sbjct: 98 RACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNE 157
Query: 97 AIAFIASSKV-------SNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGV 149
A+ + + V SN L+ L + A++ A+ GA
Sbjct: 158 AVHVLYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISA-----AMSYMFGAND 212
Query: 150 QTNPYSDLENFKAIMIWGYNPAETHPV---VMDYILNAK-RKGAKIIVIDVR-ETTTMRL 204
+P D+ N K ++++G NPAET V Y+ A+ R A++IVID R T
Sbjct: 213 GNSP-DDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGR 271
Query: 205 ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY- 255
D L I PGTD LA A+ V+I+E + D+ F+ VG+ E + K Y
Sbjct: 272 EDEWLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYI 331
Query: 256 ----------TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAV 305
TPE+A K+T I A+ I ++ARE A I G G +H +G + A+
Sbjct: 332 LGEGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAI 391
Query: 306 IDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVE 365
+++L G VG GG +R +G+ +G + P+ ++ + +++ +
Sbjct: 392 AMLSVLTGNVGINGGNSGVR-----EGSWDLGV------EWFPMLENPVKTQISVFTWTD 440
Query: 366 DIPTERGLYLTELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLEL 416
I + G +T D + L+ +K L+ N +++ ++ + LQ K E+
Sbjct: 441 AI--DHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEM 498
Query: 417 LVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPG-----EAKPDW 471
+V D F+T +A++ +LP E+E ++ E + + P E KP +
Sbjct: 499 IVGIDHFMTASAKYCDILLPDLMPTEQE-DLISHESAGNMGYVILAQPATSAKFERKPIY 557
Query: 472 EILSLLGKELDLPGF--------PYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPY 523
+LS + K L + +E ++ + + + PE+ EE+K +
Sbjct: 558 WMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMP--DYEEMKTTGIFKKKC 615
Query: 524 KRLHTIRF------------QTPDGKARLIAV--------------EQIMP--------- 548
H + F +TP GK + + E I P
Sbjct: 616 PEEHYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFD 675
Query: 549 -WEQP-NGEYPLILT--TVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKD 604
W+ P YPL LT + +H + G + +++ V+I+ DA+ GI+
Sbjct: 676 GWDDPLRKTYPLQLTGFHYKARTHSSYGNI-----DVLQQACPQEVWINPIDAQARGIRH 730
Query: 605 GDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
GD V+V G +++ AK++ ++ GV +
Sbjct: 731 GDTVRVFNNNGEMLIAAKVTPRILPGVTAI 760
>sp|P77783|YNFF_ECOLI PUTATIVE DIMETHYL SULFOXIDE REDUCTASE CHAIN YNFF PRECURSOR (DMSO
REDUCTASE)
Length = 807
Score = 140 bits (349), Expect = 5e-32
Identities = 171/690 (24%), Positives = 294/690 (41%), Gaps = 124/690 (17%)
Query: 41 KLCPKGLHALEFVLSKDRLRYPLKKVGS----DFVRIGWDDAIREIASKLREIKERYGPN 96
+ C +G + DRL+YP+K+VG F RI WD+A+ I+ LR I + YG
Sbjct: 97 RACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNE 156
Query: 97 AIAFIASSKV-------SNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGV 149
A+ + + V SN L+ L + A++ A+ GA
Sbjct: 157 AVHVLYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISA-----AMSYMFGAND 211
Query: 150 QTNPYSDLENFKAIMIWGYNPAETHPV---VMDYILNAK-RKGAKIIVIDVR-ETTTMRL 204
+P D+ N K ++++G NPAET V Y+ A+ R A++IVID R T
Sbjct: 212 GNSP-DDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGR 270
Query: 205 ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV--------KKY- 255
D L I PGTD LA A+ V+I+E + D+ F+ VG+ E + K Y
Sbjct: 271 EDEWLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYI 330
Query: 256 ----------TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAV 305
TPE+A K+T I A+ I ++ARE A I G G +H +G + A+
Sbjct: 331 LGEGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAI 390
Query: 306 IDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVE 365
+++L G VG GG +R +G+ +G + P+ ++ + +++ +
Sbjct: 391 AMLSVLTGNVGINGGNSGVR-----EGSWDLGV------EWFPMLENPVKTQISVFTWTD 439
Query: 366 DIPTERGLYLTELWDAI-----LEGEVKALYIMGENPAVSE-ANVLKVRKALQ---KLEL 416
I + G +T D + L+ +K L+ N +++ ++ + LQ K E+
Sbjct: 440 AI--DHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEM 497
Query: 417 LVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPG-----EAKPDW 471
+V D F+T +A++ +LP E+E ++ E + + P E KP +
Sbjct: 498 IVGIDHFMTASAKYCDILLPDLMPTEQE-DLISHESAGNMGYVILAQPATSAKFERKPIY 556
Query: 472 EILSLLGKELDLPGF--------PYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIPY 523
+LS + K L + +E ++ + + + PE+ EE+K +
Sbjct: 557 WMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMP--DYEEMKTTGIFKKKC 614
Query: 524 KRLHTIRF------------QTPDGKARLIAV--------------EQIMP--------- 548
H + F +TP GK + + E I P
Sbjct: 615 PEEHYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFD 674
Query: 549 -WEQP-NGEYPLILT--TVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKD 604
W+ P YPL LT + +H + G + +++ V+I+ DA+ GI+
Sbjct: 675 GWDDPLRKTYPLQLTGFHYKARTHSSYGNI-----DVLQQACPQEVWINPIDAQARGIRH 729
Query: 605 GDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
GD V+V G +++ AK++ ++ GV +
Sbjct: 730 GDTVRVFNNNGEMLIAAKVTPRILPGVTAI 759
>emb|CAB76275.1| (AL158057) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 355
Score = 139 bits (346), Expect = 1e-31
Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 5/242 (2%)
Query: 38 NRGKLCPKGLHALEFVLSKDRLRYPLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNA 97
NRG+L PK L + S+DRL PL + V WD A+ +A++ RE+ + GP +
Sbjct: 79 NRGRLGPKDLFGWQANASRDRLTRPLVRRDGQLVETDWDTAMDLVAARSRELLDSRGPGS 138
Query: 98 IAFIASSKVSNEENYLLQKIARL-LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSD 156
I F S ++ EE Y L +AR +GTN++D RLC + ALK + G Q Y D
Sbjct: 139 IGFYTSGQLFLEEYYTLAVLARAGIGTNHLDGNTRLCTSTAAEALKESFGCDGQPGSYDD 198
Query: 157 LENFKAIMIWGYNPAETHPVVMDYILNAKRKGA---KIIVIDVRETTTMRLADYKLMINP 213
++ I ++G+N AET PV +L+ + +GA +++ +D R T A L
Sbjct: 199 FDHADVIALFGHNIAETQPVQWMRLLD-RLEGADPPRLLCVDPRPTRVAEHAAVHLAPRS 257
Query: 214 GTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIRE 273
GT++ L NAL++ I D++F+ + TVGF E+ V TP++A ++ + A I E
Sbjct: 258 GTNVALLNALLHETIRHERIDRDFIDAHTVGFGELAARVADCTPKWAAEICDVPAARIEE 317
Query: 274 VA 275
A
Sbjct: 318 AA 319
>pir||T36812 probable dehydrogenase - Streptomyces coelicolor
>gi|5441785|emb|CAB46809.1| (AL096811) putative
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 747
Score = 138 bits (345), Expect = 2e-31
Identities = 116/442 (26%), Positives = 190/442 (42%), Gaps = 29/442 (6%)
Query: 11 VCPYCGFGCNLLIDPKTLKVKPYKGEPN----RGKLCPKGLHALEFVLSKDRLRYPLKKV 66
+CP C C L + V +G+ + RG +CPKG DRLR PL +
Sbjct: 8 ICPLCEATCGLALTVDGSTVTAARGDRDDVFSRGFICPKGASFGAVDSDPDRLRAPLVRT 67
Query: 67 GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASS-KVSNEENYLLQKIAR-LLGTN 124
+ W++A +A+ +R + ERYGP+++ + + V L + LG+
Sbjct: 68 NGELREATWEEAFDAVAAGVRPLVERYGPHSVGVVLGNPNVHTMAGALYPNVLLGALGSR 127
Query: 125 NIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAE------THPVVM 178
++ + L + H L P DL+ +++ G NP E T P
Sbjct: 128 SLFTASTL-DQMPKHVSSGLLFGDANAIPVPDLDRTDHLLLIGANPLESNGSLCTAPDFP 186
Query: 179 DYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFV 238
+ K +G + V+D R T T +LAD + I PG+D L A+ +V+ EGL D +
Sbjct: 187 GRLRALKARGGTLTVVDPRRTRTAKLADRHVAIRPGSDALLLAAMAHVLYEEGLVDLGAL 246
Query: 239 RSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSG 298
G +V AV+ +TPE ++A + R +ARE A A + A+ +G G
Sbjct: 247 APHVGGVDDVAAAVRDFTPESVAAACDVDADVTRALARELAAAPTAAVYGRIGSCTVPHG 306
Query: 299 VENVIAVIDMALLLGYVGDKGG-LYPMRGQNNVQGAAYMG---ALSEFLPGYVPLTDSTF 354
V + +L G + GG L+P + A G AL + ++
Sbjct: 307 TIASWLVDVLNILTGNLDRPGGALFPQAATDRTPRPAGPGRGFALGRWRSRVSGHPEAKG 366
Query: 355 RKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKL 414
+++L D T+ G V+AL + NP +S + ++ KAL+ L
Sbjct: 367 ELPLSALAEEIDTATDAG------------EPVRALLTIAANPVLSAPDGDRLDKALESL 414
Query: 415 ELLVVQDLFLTRTARFAHYILP 436
+ +V D +L T+R AH +LP
Sbjct: 415 DFMVSVDPYLNETSRHAHVVLP 436
>emb|CAA06231.1| (AJ004933) periplasmic nitrate reductase, large subunit
[Rhodopseudomonas sp.]
Length = 559
Score = 137 bits (342), Expect = 3e-31
Identities = 120/483 (24%), Positives = 195/483 (39%), Gaps = 51/483 (10%)
Query: 34 KGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKV-------GSDFVRIGWDDAIREIASKL 86
K E NRG C KG + + DRL P+ + +F + WD+A +A K
Sbjct: 77 KSEVNRGLNCVKGYFLSKIMYGHDRLTQPMLRKTDGRYDKNGEFEPVSWDEAFDIMAEKF 136
Query: 87 REIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGTNNIDNCARLCHEASVHALKMTL 145
+ ++ GP+ + S + + E Y K+ + +NNID AR C ++V T
Sbjct: 137 KAALKKRGPSGVGMFGSGQWTVWEGYAASKLFKAGFRSNNIDPNARHCMASAVAGFMRTF 196
Query: 146 GAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRKG--AKIIVIDVRETTTMR 203
G Y D+E ++WG N AE HP++ + + + K+ V+ E
Sbjct: 197 GIDEPMGCYDDIEAADVFVLWGSNMAEMHPLLWTRVTDRRLSAPHVKVAVLSTLEHRXXX 256
Query: 204 LADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRT--------VGF---------- 245
+L+ P +D + A+ N II +K FV T +G+
Sbjct: 257 XXAIRLVFKPQSDXAILTAIANHIIKTXRVNKXFVAKHTTFKXXXTDIGYGXXPEHPLQX 316
Query: 246 ----------------SEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAI-MW 288
V YT E A +++G+ A I +A +A + W
Sbjct: 317 XXXXXXXXXXXXXXXXXXXAAFVADYTIEKASQISGVPAAKIEALAELYADPNTKVTSFW 376
Query: 289 GMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL-YPMRGQNNVQGAA-YMGALSEFLPGY 346
MG Q GV ++ LL G + + G + + G G A +G S LP
Sbjct: 377 TMGFNQDTRGVWANNLAYNLHLLTGKISEPGNSPFSLTGAXFACGTAREVGTFSHRLPAD 436
Query: 347 VPLTDSTFRKRVASLWGVED--IPTERGLYLTELWDAILEGEVKALYIMGEN--PAVSEA 402
+ +T+ R +W + + IP + G + + +G + A ++ N A + A
Sbjct: 437 MVVTNKKHRDIAEKIWKLPEGTIPDKPGYHAVLQSRMLKDGLLNAYWVQVNNNLQAGANA 496
Query: 403 NVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCD 462
N +VV D + + TA A ILP A + EKEG+Y N+ERR Q+ ++
Sbjct: 497 NEETYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGAYGNAERRTQFWHQLVA 556
Query: 463 PPG 465
PG
Sbjct: 557 APG 559
>pir||B83307 probable molybdopterin oxidoreductase PA2714 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948789|gb|AAG06102.1|AE004699_7 (AE004699) probable
molybdopterin oxidoreductase [Pseudomonas aeruginosa]
Length = 769
Score = 132 bits (330), Expect = 9e-30
Identities = 119/457 (26%), Positives = 191/457 (41%), Gaps = 28/457 (6%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPYKGEPN----RGKLCPKGLHALEFVLSKDRLRYPLK 64
+ C C C L + + ++ +G+ + +G +C K + DRL P++
Sbjct: 10 KTACILCSLNCGLEVQTENGRISKIRGDDDHPASQGYVCEKSQRMDYYQNGADRLDTPMR 69
Query: 65 K-VGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLL-QKIARLLG 122
+ + I WD AIRE+A K IK R+G +I + N + LG
Sbjct: 70 RRPDGSYEAIDWDTAIREVAEKFLAIKRRHGGESILYYGGGAQGNHLGGAYGDSTLKALG 129
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYIL 182
N G GV + D E+ + ++ G NP ++H +L
Sbjct: 130 VKYRSNALAQEKTGEFWVQGKMFGTGV----HGDFEHCEGAILIGKNPWQSHGFARARVL 185
Query: 183 ---NAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
AK IIVID R + T LAD+ L I PGTD AL+ +I+ +GL ++++
Sbjct: 186 LNAMAKDPARSIIVIDPRLSETAALADFHLQIRPGTDAWCLAALVGIIVQDGLLARDWLA 245
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
T G+ + + Y + G+ +R AR A A S + + +G+ ++
Sbjct: 246 EHTSGYEHIVDELNAIPVAYCAETCGVAEDKLRAAARRIASASSVSALEDLGMQMNLHST 305
Query: 300 ENVIAVIDMALLLGYVGDKG---GLYPMRGQNNV-QGAAYMGALSEFLPGYVPLTDSTFR 355
+ LL G+ G G P + +G MG P +
Sbjct: 306 LGSYLQRLVWLLTGHYGRPGTSNAFVPFLSLSKASKGDTSMG--KRGAPRVEKRSPVANA 363
Query: 356 KRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLE 415
K + L IP E LT+ +A+ + NP S A+ ++R+A++ LE
Sbjct: 364 KIIIGLIPCNVIPEE---ILTD-----HPKRYRAMLVETGNPLHSLADSQRMREAMRALE 415
Query: 416 LLVVQDLFLTRTARFAHYILPAAAFCEK-EGSYMNSE 451
L VV D+ +T TAR A Y+LPAA+ EK E ++ N E
Sbjct: 416 LSVVIDVAMTETARHADYVLPAASQFEKAEATFFNLE 452
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 132 bits (329), Expect = 1e-29
Identities = 169/701 (24%), Positives = 286/701 (40%), Gaps = 117/701 (16%)
Query: 32 PYKGEPNRGKLCPKGLHALEFVLSKDRLRYPL---------------KKVGSDFVRIGWD 76
P++ +P+ P L+ + S R++YP+ + DFVR+ WD
Sbjct: 73 PWEKDPHPS---PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWD 129
Query: 77 DAIREIASKLREIKERYGPNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNC 129
A+ +A++++ ++E YGP + + + ++ N LL+++ L G N +
Sbjct: 130 QALDLVAAEVKRVEETYGPQGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDY 188
Query: 130 ARLCHEASVHALKMTLGAGVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDY 180
+ + + + TL Q + L EN + ++ W +P +T +
Sbjct: 189 STGAAQVIMPHVVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPG 248
Query: 181 ILNAKRKGAKIIVID-VRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+ K KG K+IVID VR T + P TD+ + + + +++E LYDK+F+
Sbjct: 249 LEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIA 308
Query: 240 SRTVGFSEV------KMAVKKYTPEYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGL 292
+ T GF + + T E+AE ++G+ A+ I+E+AR F +K A W M
Sbjct: 309 NYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQR 368
Query: 293 TQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDS 352
H G + ++ +A +LG +G GG + + + G L G +
Sbjct: 369 MHH--GEQAHWMLVTLASMLGQIGLPGGGFGL--SYHYSGGGTPSTSGPALAGITDGGAA 424
Query: 353 TFRKRVASLWGVEDIPTERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANV 404
T + G IP R + + E A + +VK Y +G NP V +
Sbjct: 425 TKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDR 484
Query: 405 LKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFK 459
++ KA +KLE VV D T TAR A +LPA E+ G Y N+ I K
Sbjct: 485 NRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKK 542
Query: 460 VCDPPGEAKPDWEILSLL------GKE--------------------------LDLPGFP 487
+ +P EA+ D++I + + GKE +++P F
Sbjct: 543 IVEPLYEARSDYDIFAAVAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFD 602
Query: 488 YEKVEDITEEYFKMFPELAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPD 535
E I E FP G + L G+I Y + + + D
Sbjct: 603 AFWAEGIVE-----FPVTDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDD 656
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYIS 593
A +E + + P +YPL + + H +R V+ EP + +
Sbjct: 657 CPAHPTWMEPLERLDGPGAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MH 714
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
DA GI DGD+V+V RG I+ K++ V +GVI +
Sbjct: 715 PDDAAARGIADGDVVRVHNDRGQILTGVKVTDAVMKGVIQI 755
>emb|CAA64689.1| (X95407) dimethyl sulfoxide/trimethylamine N-oxide reductase
[Rhodobacter capsulatus]
Length = 794
Score = 132 bits (328), Expect = 2e-29
Identities = 172/713 (24%), Positives = 294/713 (41%), Gaps = 120/713 (16%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ WD A+ +A++++ ++E YG
Sbjct: 59 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYG 118
Query: 95 PNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P + + + ++ N LL+++ L G N + + + + + TL
Sbjct: 119 PQGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEV 177
Query: 148 GVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDYILNAKRKGAKIIVIDVRE 198
Q + L EN + ++ W +P +T + + K KG K+IVID
Sbjct: 178 YEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVR 237
Query: 199 TTTMRL--ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVK---MAVK 253
T T+ AD+ + P TD+ + + + +++E LYDK+F+ + T GF + M
Sbjct: 238 TKTVEFFGADH-VTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGET 296
Query: 254 KYTP---EYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGLTQHVSGVENVIAVIDMA 309
TP E+A ++G+ A+ I+E+AR F +K A W M H G + ++ +A
Sbjct: 297 DSTPKTAEWASDISGVPAETIKELARLFKSKRTMLAAGWSMQRMHH--GEQAHWMLVTLA 354
Query: 310 LLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPT 369
+LG +G GG + + + G + L G +T + G IP
Sbjct: 355 SMLGQIGLPGGGFGL--SYHYSGGGTPSSSGPALSGITDGGAATKGPEWLAASGASVIPV 412
Query: 370 ERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
R + + E A + +VK Y +G NP V + ++ KA +KLE +V D
Sbjct: 413 ARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHD 472
Query: 422 LFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGEAKPDWEILSL 476
T TAR A +LPA E+ G Y N+ I K+ +P EA+ D++I +
Sbjct: 473 FQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKKIVEPLYEARSDYDIFAA 530
Query: 477 L------GKE--------------------------LDLPGFPYEKVEDITEEYFKMFPE 504
+ GKE +++P F E I E FP
Sbjct: 531 VAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVE-----FPV 585
Query: 505 LAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQP 552
G + L G+I Y + + + D A +E + + P
Sbjct: 586 TDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDDCPAHPTWMEPLERLDGP 644
Query: 553 NGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKV 610
+YPL + + H +R V+ EP + + DA GI DGD+V+V
Sbjct: 645 GAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MHPDDAAARGIADGDVVRV 702
Query: 611 ETRRGSIVLKAKIS-KVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSARI 662
RG I+ K++ V +GVI + ++ + +AGT + KY +
Sbjct: 703 HNDRGQILTGVKVTDAVMKGVIQI---YEGGWYDPSDVTEAGTLD-KYGDVNV 751
>pdb|1DMS| Structure Of Dmso Reductase
Length = 781
Score = 132 bits (328), Expect = 2e-29
Identities = 172/713 (24%), Positives = 294/713 (41%), Gaps = 120/713 (16%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ WD A+ +A++++ ++E YG
Sbjct: 46 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYG 105
Query: 95 PNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P + + + ++ N LL+++ L G N + + + + + TL
Sbjct: 106 PQGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEV 164
Query: 148 GVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDYILNAKRKGAKIIVIDVRE 198
Q + L EN + ++ W +P +T + + K KG K+IVID
Sbjct: 165 YEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVR 224
Query: 199 TTTMRL--ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVK---MAVK 253
T T+ AD+ + P TD+ + + + +++E LYDK+F+ + T GF + M
Sbjct: 225 TKTVEFFGADH-VTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGET 283
Query: 254 KYTP---EYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGLTQHVSGVENVIAVIDMA 309
TP E+A ++G+ A+ I+E+AR F +K A W M H G + ++ +A
Sbjct: 284 DSTPKTAEWASDISGVPAETIKELARLFKSKRTMLAAGWSMQRMHH--GEQAHWMLVTLA 341
Query: 310 LLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPT 369
+LG +G GG + + + G + L G +T + G IP
Sbjct: 342 SMLGQIGLPGGGFGL--SYHYSGGGTPSSSGPALSGITDGGAATKGPEWLAASGASVIPV 399
Query: 370 ERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
R + + E A + +VK Y +G NP V + ++ KA +KLE +V D
Sbjct: 400 ARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHD 459
Query: 422 LFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGEAKPDWEILSL 476
T TAR A +LPA E+ G Y N+ I K+ +P EA+ D++I +
Sbjct: 460 FQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKKIVEPLYEARSDYDIFAA 517
Query: 477 L------GKE--------------------------LDLPGFPYEKVEDITEEYFKMFPE 504
+ GKE +++P F E I E FP
Sbjct: 518 VAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVE-----FPV 572
Query: 505 LAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQP 552
G + L G+I Y + + + D A +E + + P
Sbjct: 573 TDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDDCPAHPTWMEPLERLDGP 631
Query: 553 NGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKV 610
+YPL + + H +R V+ EP + + DA GI DGD+V+V
Sbjct: 632 GAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MHPDDAAARGIADGDVVRV 689
Query: 611 ETRRGSIVLKAKIS-KVKEGVIVVPFHFDANILTNDALNKAGTPELKYSSARI 662
RG I+ K++ V +GVI + ++ + +AGT + KY +
Sbjct: 690 HNDRGQILTGVKVTDAVMKGVIQI---YEGGWYDPSDVTEAGTLD-KYGDVNV 738
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer >gi|10120738|pdb|1E60|C Chain C, Oxidized Dmso
Reductase Exposed To Hepes - Structure Ii Buffer
>gi|10120739|pdb|1E61|A Chain A, Oxidized Dmso Reductase
Exposed To Hepes - Structure Ii Buffer
>gi|10120740|pdb|1E61|C Chain C, Oxidized Dmso Reductase
Exposed To Hepes - Structure Ii Buffer
Length = 823
Score = 132 bits (328), Expect = 2e-29
Identities = 167/701 (23%), Positives = 284/701 (39%), Gaps = 117/701 (16%)
Query: 32 PYKGEPNRGKLCPKGLHALEFVLSKDRLRYPL---------------KKVGSDFVRIGWD 76
P++ +P+ P L+ + S R++YP+ + DFVR+ WD
Sbjct: 73 PWEKDPHPS---PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWD 129
Query: 77 DAIREIASKLREIKERYGPNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNC 129
A+ +A++++ ++E YGP + + + ++ N LL+++ L G N +
Sbjct: 130 QALDLVAAEVKRVEETYGPEGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDY 188
Query: 130 ARLCHEASVHALKMTLGAGVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDY 180
+ + + + TL Q + L EN + ++ W +P +T +
Sbjct: 189 STGAAQVIMPHVVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPG 248
Query: 181 ILNAKRKGAKIIVID-VRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+ K KG K+IVID VR T + P TD+ + + + +++E LYDK+F+
Sbjct: 249 LEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIA 308
Query: 240 SRTVGFSEV------KMAVKKYTPEYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGL 292
+ T GF + + T E+AE ++G+ A+ I+E+AR F +K A W M
Sbjct: 309 NYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQR 368
Query: 293 TQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDS 352
H G + ++ +A +LG +G GG + + + G L G +
Sbjct: 369 MHH--GEQAHWMLVTLASMLGQIGLPGGGFGL--SYHYSGGGTPSTSGPALAGITDGGAA 424
Query: 353 TFRKRVASLWGVEDIPTERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANV 404
T + G IP R + + E A + +VK Y +G NP V +
Sbjct: 425 TKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDR 484
Query: 405 LKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFK 459
++ KA +KLE VV D T TAR A +LPA E+ G Y N+ I K
Sbjct: 485 NRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKK 542
Query: 460 VCDPPGEAKPDWEILSLLGKEL--------------------------------DLPGFP 487
+ +P EA+ D++I + + + L ++P F
Sbjct: 543 IVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFD 602
Query: 488 YEKVEDITEEYFKMFPELAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPD 535
E I E FP G + L G+I Y + + + D
Sbjct: 603 AFWAEGIVE-----FPVTDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDD 656
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYIS 593
A +E + + P +YPL + + H +R V+ EP + +
Sbjct: 657 CPAHPTWMEPLERLDGPGAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MH 714
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
DA GI DGD+V+V RG I+ K++ V +GVI +
Sbjct: 715 PDDAAARGIADGDVVRVHNDRGQILTGVKVTDAVMKGVIQI 755
>pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus With Bound Dmso
Substrate
Length = 823
Score = 131 bits (327), Expect = 2e-29
Identities = 167/701 (23%), Positives = 284/701 (39%), Gaps = 117/701 (16%)
Query: 32 PYKGEPNRGKLCPKGLHALEFVLSKDRLRYPL---------------KKVGSDFVRIGWD 76
P++ +P+ P L+ + S R++YP+ + DFVR+ WD
Sbjct: 73 PWEKDPHPS---PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWD 129
Query: 77 DAIREIASKLREIKERYGPNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNC 129
A+ +A++++ ++E YGP+ + + + ++ N LL+++ L G N +
Sbjct: 130 QALDLVAAEVKRVEETYGPSGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDY 188
Query: 130 ARLCHEASVHALKMTLGAGVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDY 180
+ + + + TL Q + L EN + ++ W +P +T +
Sbjct: 189 STGAAQVIMPHVVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPG 248
Query: 181 ILNAKRKGAKIIVID-VRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+ K KG K+IVID VR T + P TD+ + + + +++E LYDK+F+
Sbjct: 249 LEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIA 308
Query: 240 SRTVGFSEV------KMAVKKYTPEYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGL 292
+ T GF + + T E+AE ++G+ A+ I+E+AR F +K A W M
Sbjct: 309 NYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQR 368
Query: 293 TQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDS 352
H G + ++ +A +LG +G GG + + + G L G +
Sbjct: 369 MHH--GEQAHWMLVTLASMLGQIGLPGGGFGL--SYHYSGGGTPSTSGPALAGITDGGAA 424
Query: 353 TFRKRVASLWGVEDIPTERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANV 404
T + G IP R + + E A + +VK Y +G NP V +
Sbjct: 425 TKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDR 484
Query: 405 LKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFK 459
++ KA +KLE VV D T TAR A +LPA E+ G Y N+ I K
Sbjct: 485 NRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKK 542
Query: 460 VCDPPGEAKPDWEILSLLGKEL--------------------------------DLPGFP 487
+ +P EA+ D++I + + + L +P F
Sbjct: 543 IVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVQMPAFD 602
Query: 488 YEKVEDITEEYFKMFPELAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPD 535
E I E FP G + L G+I Y + + + D
Sbjct: 603 AFWAEGIVE-----FPVTDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDD 656
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYIS 593
A +E + + P +YPL + + H +R V+ EP + +
Sbjct: 657 CPAHPTWMEPLERLDGPGAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MH 714
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
DA GI DGD+V+V RG I+ K++ V +GVI +
Sbjct: 715 PDDAAARGIADGDVVRVHNDRGQILTGVKVTDAVMKGVIQI 755
>sp|Q52675|DMSA_RHOCA DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMSO REDUCTASE) (DMSOR)
>gi|2981245|gb|AAD13674.1| (U49506) dimethyl sulfoxide
reductase dorA [Rhodobacter capsulatus]
Length = 823
Score = 131 bits (326), Expect = 3e-29
Identities = 167/684 (24%), Positives = 282/684 (40%), Gaps = 116/684 (16%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ WD A+ +A++++ ++E YG
Sbjct: 88 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYG 147
Query: 95 PNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P + + + ++ N LL+++ L G N + + + + + TL
Sbjct: 148 PQGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEV 206
Query: 148 GVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDYILNAKRKGAKIIVIDVRE 198
Q + L EN + ++ W +P +T + + K KG K+IVID
Sbjct: 207 YEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVR 266
Query: 199 TTTMRL--ADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVK---MAVK 253
T T+ AD+ + P TD+ + + + +++E LYDK+F+ + T GF + M
Sbjct: 267 TKTVEFFGADH-VTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGET 325
Query: 254 KYTP---EYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGLTQHVSGVENVIAVIDMA 309
TP E+A ++G+ A+ I+E+AR F +K A W M H G + ++ +A
Sbjct: 326 DSTPKTAEWASDISGVPAETIKELARLFISKRTMLAAGWSMQRMHH--GEQAHWMLVTLA 383
Query: 310 LLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPT 369
+LG +G GG + + + G L G +T + G IP
Sbjct: 384 SMLGQIGLPGGGFGL--SYHYSGGGTPSTSGPALSGITDGGAATKGPEWLAASGASVIPV 441
Query: 370 ERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQD 421
R + + E A + +VK Y +G NP V + ++ KA +KLE +V D
Sbjct: 442 ARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHD 501
Query: 422 LFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGEAKPDWEILSL 476
T TAR A +LPA E+ G Y N+ I K+ +P EA+ D++I +
Sbjct: 502 FQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKKIVEPLYEARSDYDIFAA 559
Query: 477 L------GKE--------------------------LDLPGFPYEKVEDITEEYFKMFPE 504
+ GKE +++P F E I E FP
Sbjct: 560 VAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVE-----FPV 614
Query: 505 LAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQP 552
G + L G+I Y + + + D A +E + + P
Sbjct: 615 TDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDDCPAHPTWMEPLERLDGP 673
Query: 553 NGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKV 610
+YPL + + H +R V+ EP + + DA GI DGD+V+V
Sbjct: 674 GAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MHPDDAAARGIADGDVVRV 731
Query: 611 ETRRGSIVLKAKIS-KVKEGVIVV 633
RG I+ K++ V +GVI +
Sbjct: 732 HNDRGQILTGVKVTDAVMKGVIQI 755
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
>gi|10120736|pdb|1E5V|C Chain C, Oxidized Dmso Reductase
Exposed To Hepes Buffer >gi|2981779|pdb|1DMR| Oxidized
Dmso Reductase From Rhodobacter Capsulatus
>gi|2981904|pdb|3DMR| Structure Of Dmso Reductase From
Rhodobacter Capsulatus At Ph 7.0 >gi|2981898|pdb|2DMR|
Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 131 bits (326), Expect = 3e-29
Identities = 167/701 (23%), Positives = 283/701 (39%), Gaps = 117/701 (16%)
Query: 32 PYKGEPNRGKLCPKGLHALEFVLSKDRLRYPL---------------KKVGSDFVRIGWD 76
P++ +P+ P L+ + S R++YP+ + DFVR+ WD
Sbjct: 73 PWEKDPHPS---PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWD 129
Query: 77 DAIREIASKLREIKERYGPNAI-----AFIASSKVSNEENYLLQKIARLLG--TNNIDNC 129
A+ +A++++ ++E YGP + + + ++ N LL+++ L G N +
Sbjct: 130 QALDLVAAEVKRVEETYGPEGVFGGSYGWKSPGRLHNCTT-LLRRMLTLAGGYVNGAGDY 188
Query: 130 ARLCHEASVHALKMTLGAGVQTNPYSDL-ENFKAIMIWGYNPAETHPV--------VMDY 180
+ + + + TL Q + L EN + ++ W +P +T +
Sbjct: 189 STGAAQVIMPHVVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPG 248
Query: 181 ILNAKRKGAKIIVID-VRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
+ K KG K+IVID VR T + P TD+ + + + +++E LYDK+F+
Sbjct: 249 LEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIA 308
Query: 240 SRTVGFSEV------KMAVKKYTPEYAEKVTGIEAKLIREVAREF-AKAGSGAIMWGMGL 292
+ T GF + + T E+AE ++G+ A+ I+E+AR F +K A W M
Sbjct: 309 NYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQR 368
Query: 293 TQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDS 352
H G + ++ +A +LG +G GG + + + G L G +
Sbjct: 369 MHH--GEQAHWMLVTLASMLGQIGLPGGGFGL--SYHYSGGGTPSTSGPALAGITDGGAA 424
Query: 353 TFRKRVASLWGVEDIPTERGLYLTELWDAILE--------GEVKALYIMGENPAVSEANV 404
T + G IP R + + E A + +VK Y +G NP V +
Sbjct: 425 TKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDR 484
Query: 405 LKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFK 459
++ KA +KLE VV D T TAR A +LPA E+ G Y N+ I K
Sbjct: 485 NRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIGDYSNT--GILAMKK 542
Query: 460 VCDPPGEAKPDWEILSLLGKEL--------------------------------DLPGFP 487
+ +P EA+ D++I + + + L +P F
Sbjct: 543 IVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVQMPAFD 602
Query: 488 YEKVEDITEEYFKMFPELAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPD 535
E I E FP G + L G+I Y + + + D
Sbjct: 603 AFWAEGIVE-----FPVTDGADFVRYASFREDPLLNPLGTPTGLIEIYSK-NIEKMGYDD 656
Query: 536 GKARLIAVEQIMPWEQPNGEYPLILTTVRVMS--HYNTGEMTMRSPSLVKLMSEPVVYIS 593
A +E + + P +YPL + + H +R V+ EP + +
Sbjct: 657 CPAHPTWMEPLERLDGPGAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQ-GHEPCL-MH 714
Query: 594 ESDAKKYGIKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
DA GI DGD+V+V RG I+ K++ V +GVI +
Sbjct: 715 PDDAAARGIADGDVVRVHNDRGQILTGVKVTDAVMKGVIQI 755
>sp|P44798|BISC_HAEIN PROBABLE BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) (BSO REDUCTASE)
>gi|1073907|pir||H64083 biotin sulfoxide reductase (EC
1.-.-.-) - Haemophilus influenzae (strain Rd KW20)
>gi|1573641|gb|AAC22303.1| (U32747) biotin sulfoxide
reductase (bisC) [Haemophilus influenzae Rd]
Length = 825
Score = 130 bits (323), Expect = 6e-29
Identities = 148/640 (23%), Positives = 274/640 (42%), Gaps = 95/640 (14%)
Query: 69 DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVS----NEENYLLQKIARLLGT- 123
++VR+ WD+A+ + ++L+ +++ +G I + S + LLQ+ G
Sbjct: 120 EWVRVSWDEALDLVHNQLKRVRDEHGSTGIFAGSYGWFSCGSLHASRTLLQRYMNATGGF 179
Query: 124 --NNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVV---- 177
+ D H L QT+ S LE+ I++W NP T +
Sbjct: 180 VGHKGDYSTGAAQVIMPHVLGTIEVYEQQTSWESILESSDIIVLWSANPLTTMRIAWMST 239
Query: 178 ----MDYILNAKRKGAKIIVIDVRETTTMRLADYK-LMINPGTDITLANALMNVIISEGL 232
++Y + G +II ID +++ T ++ + + + +N TD+ L + + ++ +G
Sbjct: 240 DQKGIEYFKKFQASGKRIICIDPQKSETCQMLNAEWIPVNTATDVPLMLGIAHTLVEQGK 299
Query: 233 YDKEFVRSRTVGFSEV------KMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAI 286
+DK+F++ T G+++ K + T E+A K+ G+ A+ I+++A +FA + +
Sbjct: 300 HDKDFLKKYTSGYAKFEEYLLGKTDGQPKTAEWAAKICGVPAETIKQLAADFASKRT-ML 358
Query: 287 MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGA-----AYMGALSE 341
M G G+ + G + ++ +A +LG +G GG + + + G +G+++
Sbjct: 359 MGGWGMQRQRHGEQTHWMLVTLASMLGQIGLPGGGFGLSYHYSNGGVPTATGGIIGSITA 418
Query: 342 FLPGYVP----LTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENP 397
G L D++ K L + D+ G + I ++KA+Y G NP
Sbjct: 419 SPSGKAGAKTWLDDTS--KSAFPLARIADVLLHPGKKIQYNGTEITYPDIKAVYWAGGNP 476
Query: 398 AVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWS 457
V + + KA QK ++++V ++ T TAR A +LPA E+ M + +
Sbjct: 477 FVHHQDTNTLVKAFQKPDVVIVNEVNWTPTARMADIVLPATTSYERNDLTMAGDYSMMSV 536
Query: 458 F---KVCDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITE-EYFKMFPELAGISVEEL 513
+ +V P EAK D++I L K G + E TE E+ + F A +
Sbjct: 537 YPMKQVVPPQFEAKNDYDIFVELAKR---AGVEEQYTEGKTEMEWLEEFYNAAFSAA--- 590
Query: 514 KNSNGIIIP-----YKRLHTIRFQ------------------------TPDGKARLIA-- 542
+N + +P + + F+ TP GK + +
Sbjct: 591 -RANRVAMPRFDKFWAENKPLSFEAGEAAKKWVRYGEFREDPLLNPLGTPSGKIEIFSDV 649
Query: 543 VEQI--------MPWEQP-------NGEYPLILTTVR--VMSHYNTGEMTMRSPSLVKLM 585
VE++ W +P EYPL L T H ++R V
Sbjct: 650 VEKMNYNDCKGHPSWMEPEEFAGNVTEEYPLALVTPHPYYRLHSQLAHTSLRQKYAVN-D 708
Query: 586 SEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK 625
EPV+ I DA GIKDGD+V++ ++RG ++ A +++
Sbjct: 709 REPVM-IHPEDAAARGIKDGDIVRIHSKRGQVLAGAAVTE 747
>gi|11499961 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483880|pir||H69547
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650704|gb|AAB91274.1| (AE001111) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 822
Score = 129 bits (320), Expect = 1e-28
Identities = 164/714 (22%), Positives = 273/714 (37%), Gaps = 120/714 (16%)
Query: 11 VCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLKKV 66
+C C C++ ++ + KV G P N GK+C +G ++ V + DRL+ PL +
Sbjct: 45 ICAMCPAACSIQVEVRDGKVHRIHGTPDHPINNGKICARGNAGVQRVYNPDRLKKPLIRT 104
Query: 67 GS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
G F W++A+ IASK++E +E P I + + LG
Sbjct: 105 GEKGTWSFREASWEEALSLIASKVKEYREMGHPEYIGMLGGWLPCTYYKPFFKAFLAALG 164
Query: 123 TNNIDNCAR-LCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYI 181
T N LC + K G G +D EN + +++ N A + VV +
Sbjct: 165 TPNGGGVPEALCFLSKALGWKSAYGFGAHPELLTDYENARYVIMLRRNVAGSISVVHGWR 224
Query: 182 LNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
L R+ K++V+D R + T AD L I PGTD+ A+MNVII+E LYD F+
Sbjct: 225 LGQNRRKFKLVVLDPRYSETAAKADVWLPIKPGTDLAFLLAMMNVIINEKLYDSNFLAK- 283
Query: 242 TVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM-------------- 287
+S M +K P G + L+ ++A+ A A++
Sbjct: 284 ---YSNAPMLLKDGKPFKVWDENGKKKYLVFDLAKGAAVEHDSAMLPALEGEYEVEGEKV 340
Query: 288 -----------------WGMGLT----QHVSGVENVIAVIDMALLLGYVGDK--GGLYPM 324
W G+T + + + A+ + G+ G K L
Sbjct: 341 IPAFEALKRRVAEYTPEWAEGITDIEAKKIREIAREFALRRGVIDSGWHGPKYRNSLLTW 400
Query: 325 R---------GQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVE-DIPTE-RGL 373
R G N G L++F+ T++ + V +W + I T G
Sbjct: 401 RAAAIVNALVGSVNNDGGLLFTGLAQFVTSKESTTEAP-SQSVLRMWAEKRGIATAFLGH 459
Query: 374 YLTELWDAILEGE---VKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARF 430
+ +DAI+ + +K L+++G N ++ K +AL+KL+ +V D+ +
Sbjct: 460 TVQAFYDAIVNEDPYPIKMLFVVGHNLLMNMPERQKWEEALKKLDFMVAVDILPQDHLYY 519
Query: 431 AHYILPAAAFCEKE--------GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELD 482
A +LP + + EK+ R++ + D + EI S LG E D
Sbjct: 520 ADVVLPESTYIEKDDPLFPIAYAPAFGFHTRVKAIEPIYDTKHVIEMMVEIASRLGTE-D 578
Query: 483 LPGFPYEKVEDITEEYFKMF-------------PELAGISVEELKNSNGII------IPY 523
K + E K + E G++ EL + ++ I Y
Sbjct: 579 TFFKALSKGLGVDAEKLKSYYHGEGVAGIRRAQAEAKGVNYNELLSKGYVLKAGRDKIVY 638
Query: 524 KRLHTIRFQTPDGKARLIAV--------------EQIMPWEQPN------GEYPLILTTV 563
+ TP GK + + + ++ W P G L
Sbjct: 639 NMPYKQPLPTPTGKVEIFSFMLANFASKASEPYWDALIKWVPPKVSERKLGSNEFYLAYS 698
Query: 564 RVMSHYNTGEMTMRSPSLVKLMSEPVVY-----ISESDAKKYGIKDGDLVKVET 612
R S + T T +P L KL+ + +Y I+ A + GI++GD V VE+
Sbjct: 699 R--SPFTTHSSTSDNPLLAKLIDDAELYYKGIWINSERAAELGIRNGDRVVVES 750
>gb|AAB94874.1| (AF016236) DMSO/TMAO-reductase [Rhodobacter sphaeroides]
Length = 822
Score = 128 bits (318), Expect = 2e-28
Identities = 174/693 (25%), Positives = 285/693 (41%), Gaps = 134/693 (19%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ WD+A+ +A +L+ ++E YG
Sbjct: 88 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVAKELKRVQESYG 147
Query: 95 PNAIAFIASSKVSNEE-----NYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P F S N L+++ L G N+ + + + + + TL
Sbjct: 148 PTG-TFGGSYGWKNPGRLHNCQVLMRRALNLAGGFVNSSGDYSTGAAQIIMPHVMGTLEV 206
Query: 148 GVQTNPYS-DLENFKAIMIWGYNPAETHP---VVMDY-----ILNAKRKGAKIIVIDVRE 198
Q + ++N + ++ W +P +T+ VV D+ + K KG K+I I+
Sbjct: 207 YEQQTAWPVVVDNTELMVFWAADPVKTNQIGWVVPDHGAFAGMQAMKEKGTKVICINPVR 266
Query: 199 TTTMRLADY----KLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAV-- 252
T T ADY + P TD+ L + + + SE L+DK+F+ + T GF +
Sbjct: 267 TET---ADYFGAELVSPRPQTDVALMLGMAHTLYSEDLHDKDFIENCTSGFDIFAAYLTG 323
Query: 253 ----KKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDM 308
T E+A ++ G+ A+ I+E+AR F G + G + + G + ++ +
Sbjct: 324 ESDGTPKTAEWAAEICGLPAEQIKELARRFV-GGRTMLAAGWSIQRMHHGEQAHWMLVTL 382
Query: 309 ALLLGYVGDKGGLYPM-----RGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWG 363
A ++G +G GG + + G + +G +S+ G P+ + + S G
Sbjct: 383 ASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISD---GGKPVEGAAW----LSASG 435
Query: 364 VEDIPTER--GLYLTELWDAILEG------EVKALYIMGENPAVSEANVLKVRKALQKLE 415
IP R + L + G +VK Y +G NP + ++ KA +KLE
Sbjct: 436 AASIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWVGGNPFAHHQDRNRMLKAWEKLE 495
Query: 416 LLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGEAKPD 470
+VQD T TAR A +LPA E+ G Y N R I KV DP EA+ D
Sbjct: 496 TFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSN--RAILAMKKVVDPLYEARSD 553
Query: 471 WEILSLLG--------------------------------KELDLPGFPYEKVEDITEEY 498
++I + L K++++P F ED E
Sbjct: 554 YDIFAALTERLGKGKEFTEGRDEMGWISSFYEAAVKQAEFKQMEMPSF-----EDFWSEG 608
Query: 499 FKMFPELAGIS------------VEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQI 546
FP G + L +G+I Y + + + D A +E
Sbjct: 609 IVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSK-NIEKMGYDDCPAHPTWMEPA 667
Query: 547 MPWEQPNGEYPLILTTVRVMSHYNTG-EMTMRSPSLVKLMS----EPVVYISESDAKKYG 601
P +YPL + V SH N+ + SL L + EP + I+ DA G
Sbjct: 668 ERLGGPGAKYPLHV----VASHPNSRLHSQLNGTSLRDLYAVAGHEPCL-INPDDAAARG 722
Query: 602 IKDGDLVKVETRRGSIVLKAKIS-KVKEGVIVV 633
I DGD+++V RG I++ AK+S V G I V
Sbjct: 723 IADGDVLRVFNDRGQILVGAKVSDAVMPGAIQV 755
>sp|Q57366|DMSA_RHOSH DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMSO REDUCTASE) (DMSOR)
>gi|2126478|pir||S70012 methionine-S-oxide reductase (EC
1.8.4.5) precursor - Rhodobacter sphaeroides
>gi|2126485|pir||JC4322 methionine-S-oxide reductase (EC
1.8.4.5) - Rhodobacter sphaeroides
>gi|1139564|dbj|BAA07615.1| (D38634) dimethyl sulfoxide
reductase precursor [Rhodobacter sphaeroides]
>gi|1161236|gb|AAB07230.1| (L46851) dimethyl sulfoxide
reductase [Rhodobacter sphaeroides]
Length = 822
Score = 126 bits (313), Expect = 9e-28
Identities = 166/678 (24%), Positives = 282/678 (41%), Gaps = 123/678 (18%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ WD+A+ +A +L+ ++E YG
Sbjct: 88 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYG 147
Query: 95 PN-----AIAFIASSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P + + + ++ N + L+++ L G N+ + + + + + TL
Sbjct: 148 PTGTFGGSYGWKSPGRLHNCQ-VLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEV 206
Query: 148 GVQTNPYSDL-ENFKAIMIWGYNPAETHP---VVMDYILNA-----KRKGAKIIVIDVRE 198
Q + + EN ++ W +P +T+ V+ D+ A K KG ++I I+
Sbjct: 207 YEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVR 266
Query: 199 TTTMRLADY----KLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVK- 253
T T ADY + P TD+ L + + + SE L+DK+F+ + T GF +
Sbjct: 267 TET---ADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTG 323
Query: 254 -----KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDM 308
T E+A ++ G+ A+ IRE+AR F AG + G + + G + ++ +
Sbjct: 324 ESDGTPKTAEWAAEICGLPAEQIRELARSFV-AGRTMLAAGWSIQRMHHGEQAHWMLVTL 382
Query: 309 ALLLGYVGDKGGLYPM-----RGQNNVQGAAYMGALSE---FLPGYVPLTDSTFRKRVAS 360
A ++G +G GG + + G + +G +S+ + G L++S
Sbjct: 383 ASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSES-------- 434
Query: 361 LWGVEDIPTER--GLYLTELWDAILEG------EVKALYIMGENPAVSEANVLKVRKALQ 412
G IP R + L + G +VK Y G NP + ++ KA +
Sbjct: 435 --GATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWE 492
Query: 413 KLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGEA 467
KLE +VQD T TAR A +LPA E+ G Y N R I KV DP EA
Sbjct: 493 KLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSN--RAILAMKKVVDPLYEA 550
Query: 468 KPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKN----------SN 517
+ D++I + L + L G + + D + F E A + E KN S
Sbjct: 551 RSDYDIFAALAERLG-KGAEFTEGRD-EMGWISSFYE-AAVKQAEFKNVAMPSFEDFWSE 607
Query: 518 GII-------IPYKRLHTIR-------FQTPDGKARLIA--VEQI--------MPWEQP- 552
GI+ + R R TP G + + +E++ W +P
Sbjct: 608 GIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPA 667
Query: 553 ------NGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGD 606
+YPL + S ++ L + I+ +DA GI DGD
Sbjct: 668 ERLGGAGAKYPLHVVASHPKSRLHSQLNGTSLRDLYAVAGHEPCLINPADAAARGIADGD 727
Query: 607 LVKVETRRGSIVLKAKIS 624
+++V RG I++ AK+S
Sbjct: 728 VLRVFNDRGQILVGAKVS 745
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 126 bits (313), Expect = 9e-28
Identities = 166/678 (24%), Positives = 282/678 (41%), Gaps = 123/678 (18%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ WD+A+ +A +L+ ++E YG
Sbjct: 46 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYG 105
Query: 95 PN-----AIAFIASSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P + + + ++ N + L+++ L G N+ + + + + + TL
Sbjct: 106 PTGTFGGSYGWKSPGRLHNCQ-VLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEV 164
Query: 148 GVQTNPYSDL-ENFKAIMIWGYNPAETHP---VVMDYILNA-----KRKGAKIIVIDVRE 198
Q + + EN ++ W +P +T+ V+ D+ A K KG ++I I+
Sbjct: 165 YEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIXINPVR 224
Query: 199 TTTMRLADY----KLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVK- 253
T T ADY + P TD+ L + + + SE L+DK+F+ + T GF +
Sbjct: 225 TET---ADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTG 281
Query: 254 -----KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDM 308
T E+A ++ G+ A+ IRE+AR F AG + G + + G + ++ +
Sbjct: 282 ESDGTPKTAEWAAEICGLPAEQIRELARSFV-AGRTMLAAGWSIQRMHHGEQAHWMLVTL 340
Query: 309 ALLLGYVGDKGGLYPM-----RGQNNVQGAAYMGALSE---FLPGYVPLTDSTFRKRVAS 360
A ++G +G GG + + G + +G +S+ + G L++S
Sbjct: 341 ASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSES-------- 392
Query: 361 LWGVEDIPTER--GLYLTELWDAILEG------EVKALYIMGENPAVSEANVLKVRKALQ 412
G IP R + L + G +VK Y G NP + ++ KA +
Sbjct: 393 --GATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWE 450
Query: 413 KLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGEA 467
KLE +VQD T TAR A +LPA E+ G Y N R I KV DP EA
Sbjct: 451 KLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSN--RAILAMKKVVDPLYEA 508
Query: 468 KPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKN----------SN 517
+ D++I + L + L G + + D + F E A + E KN S
Sbjct: 509 RSDYDIFAALAERLG-KGAEFTEGRD-EMGWISSFYE-AAVKQAEFKNVAMPSFEDFWSE 565
Query: 518 GII-------IPYKRLHTIR-------FQTPDGKARLIA--VEQI--------MPWEQP- 552
GI+ + R R TP G + + +E++ W +P
Sbjct: 566 GIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPA 625
Query: 553 ------NGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGD 606
+YPL + S ++ L + I+ +DA GI DGD
Sbjct: 626 ERLGGAGAKYPLHVVASHPKSRLHSQLNGTSLRDLYAVAGHEPCLINPADAAARGIADGD 685
Query: 607 LVKVETRRGSIVLKAKIS 624
+++V RG I++ AK+S
Sbjct: 686 VLRVFNDRGQILVGAKVS 703
>pir||B70838 hypothetical protein Rv0197 - Mycobacterium tuberculosis (strain
H37RV) >gi|2909595|emb|CAA17319.1| (AL021928)
hypothetical protein Rv0197 [Mycobacterium tuberculosis]
Length = 762
Score = 126 bits (313), Expect = 9e-28
Identities = 125/453 (27%), Positives = 205/453 (44%), Gaps = 40/453 (8%)
Query: 12 CPYCGFGCNLLI---DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRYPLKK-V 66
C C C +++ D + +++ K P + G C K L + ++ RL P+++
Sbjct: 11 CILCECNCGIVVQVDDRRLARIRGDKAHPGSAGYTCNKALRLDHYQNNRARLSSPMRRRA 70
Query: 67 GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQ-KIARLLGTNN 125
+ I WD AI EIA ++I++ +G + I + N + LG+
Sbjct: 71 DGTYEEIDWDTAIVEIAEGFKQIRDTHGGDKIFYYGGGGQGNHLGGAYSGAFLKALGSRY 130
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNP--AETHP---VVMDY 180
N L E + A G T + EN + + G NP +++ P VV++
Sbjct: 131 RSNA--LAQEKTGEAWVDFQLYGGHTR--GEFENAEVSVFVGKNPWMSQSFPRARVVLNE 186
Query: 181 ILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRS 240
I AK G +IVID T T ++AD+ L + PG D AL V++ E L ++ F+ +
Sbjct: 187 I--AKDPGRSMIVIDPVVTDTAKMADFHLRVQPGCDAWCLAALAAVLVQENLCNEAFLAA 244
Query: 241 RTVGFSEVKMAVKKY-TPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
G V+ A+++ +YA++ G++ +L+R AR A S ++ +G+ Q +
Sbjct: 245 HVHGVDTVRAALQEVPVADYAQR-CGVDEELLRAAARRIGTAASVSVFEDLGIQQAPNST 303
Query: 300 ENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVA 359
+ +L G KGG + + L + G P+T + +A
Sbjct: 304 VCSYLNKLLWILTGNFAKKGGQHL---------HSSFAPLFSQVSGRTPVTGAPI---IA 351
Query: 360 SLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVV 419
L +P E LTE D +A+ + NPA S A+ R A Q LEL+VV
Sbjct: 352 GLIPGNVVPEE---ILTEHPD-----RFRAMIVERGNPAHSLADSAACRAAFQALELMVV 403
Query: 420 QDLFLTRTARFAHYILPAAAFCEK-EGSYMNSE 451
D+ +T TAR AHY+LPAA+ EK E ++ N E
Sbjct: 404 VDVAMTETARLAHYVLPAASQFEKPEATFFNFE 436
>emb|CAA06794.1| (AJ005974) trimethylamine-N-oxide reductase [Shewanella
putrefaciens]
Length = 829
Score = 125 bits (311), Expect = 2e-27
Identities = 129/462 (27%), Positives = 209/462 (44%), Gaps = 61/462 (13%)
Query: 70 FVRIGWDDAIREIASKLREIKERYGPNAI-----AFIASSKVSNEENYLLQKIARLLGTN 124
FVR+ WD A++ L E++ +YGP+ + + A+ ++ + +++ + + + N
Sbjct: 114 FVRVTWDKALKLFKHSLDEVQTKYGPSGLHAGQTGWRATGQLHSSTSHMQRAVG--MHGN 171
Query: 125 NIDNCARLCHEASVHALKMTLGAGVQTNPYSD-------LENFKAIMIWGYNP------- 170
+ A L LG+ T Y+ LEN I++W NP
Sbjct: 172 FVKKIGDYSTGAGQTILPYVLGS---TEVYAQGTSWPLILENSNTIVLWSNNPYKNLQVG 228
Query: 171 --AETHPVVMDYI--LNAKRKGAKIIVIDVRETTTMR---LADYKLMINPGTDITLANAL 223
AETH Y+ L K K KI VI + T L +L +NP TD+TL A+
Sbjct: 229 WNAETHEAFA-YLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAI 287
Query: 224 MNVIISEGLYDKEFVRSRTVGFSE-------VKMAVKKYTPEYAEKVTGIEAKLIREVAR 276
+ +I++ L+D++F++ ++GF E K + K TPE+A + G+E +IR++A+
Sbjct: 288 AHEMITQKLHDEKFIQGYSLGFEEFVPYVMGTKDGIAK-TPEWAAPICGVEPHIIRDLAK 346
Query: 277 EFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG---- 332
K G IM G + + G + +A ++G +G GG + G
Sbjct: 347 TLVK-GRTQIMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPAT 405
Query: 333 -AAYMGALSEFL-PGYVPLTDSTFRKRVASLWGVE---DIPTERGLYLTELWDAILEGEV 387
AA GA L PL DST K +S V D E G + ++ ++
Sbjct: 406 TAAAPGAFPRNLDENQKPLFDSTDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPDI 465
Query: 388 KALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE--- 444
K + G NP + ++++A QKLE +V D+ T T RF+ +LPA E+
Sbjct: 466 KMMIFSGNNPWNHHQDRNRMKQAFQKLECVVSIDVNWTATCRFSDIVLPACTTYERNDID 525
Query: 445 --GSYMNSERRIQWSFKVCDPPGEAKPDWEIL----SLLGKE 480
G+Y N R I K+ +P E+ D+EI +LLGKE
Sbjct: 526 VYGAYAN--RGILAMQKMVEPLFESLSDFEIFTRFAALLGKE 565
>gb|AAG31648.1|AF314590_2 (AF314590) periplasmic nitrate reductase large subunit precursor
[Bradyrhizobium japonicum]
Length = 314
Score = 124 bits (309), Expect = 3e-27
Identities = 75/249 (30%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKP----YKGEPNRGKLCPKGLHALEFVLSKDRLRYPLK 64
+ C +CG GC++++ K +V K E NRG C KG + + DRL P+
Sbjct: 48 KAACRFCGTGCSVMVATKENRVVATHGDIKAEVNRGLNCVKGYFLSKIMYGHDRLTQPML 107
Query: 65 KVGS-------DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKI 117
+ + DF + W +A + K +E ++ GPN +A S + + E Y K+
Sbjct: 108 RKANGKYDKNGDFTPVSWTEAFDIMEVKWKEAMKKRGPNGVAMFGSGQWTIWEGYAASKL 167
Query: 118 ARL-LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPV 176
+ TNNID AR C ++V + T G Y D+E A ++WG N AE HP+
Sbjct: 168 FKAGFRTNNIDPNARHCMASAVAGMMRTFGIDEPPGCYDDIEATDAFVLWGSNMAEMHPI 227
Query: 177 VMDYILNAKRKG--AKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYD 234
+ + + + ++ V+ E + LAD ++ P TD+ L NA+ N II+ G +
Sbjct: 228 LWTRLTDRRLSAPHVRVAVLSTFEHRSFDLADIGMVFKPQTDLYLLNAIANHIINTGRVN 287
Query: 235 KEFVRSRTV 243
K+FV + TV
Sbjct: 288 KDFVAAHTV 296
>sp|P33225|TORA_ECOLI TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR (TMAO REDUCTASE)
(TRIMETHYLAMINE OXIDASE) >gi|7447430|pir||C64841
trimethylamine-N-oxide reductase (EC 1.6.6.9) precursor
- Escherichia coli >gi|1651489|dbj|BAA36139.1| (D90736)
Trimethylamine-n-oxide reductase precursor (EC 1.6.6.9)
(tmaO reductase) (trimethylamine oxidase). [Escherichia
coli] >gi|1651495|dbj|BAA35764.1| (D90737)
Trimethylamine-n-oxide reductase precursor (EC 1.6.6.9)
(tmaO reductase) (trimethylamine oxidase). [Escherichia
coli] >gi|1787231|gb|AAC74082.1| (AE000201)
trimethylamine N-oxide reductase subunit [Escherichia
coli K12]
Length = 848
Score = 122 bits (302), Expect = 2e-26
Identities = 172/700 (24%), Positives = 294/700 (41%), Gaps = 109/700 (15%)
Query: 24 DPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG---------------S 68
D + + KP++ + K+ GL + V + R+RYP+ +V +
Sbjct: 68 DGRFVAAKPFELDKYPSKMIA-GLP--DHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDN 124
Query: 69 DFVRIGWDDAIREIASKLREIKERYGPNAIAFIA---SSKVSNEENYLLQKIARLLGTNN 125
FVR+ WD+A+ +L +++ +GP+A+ + S+ + + + +L K L G N+
Sbjct: 125 RFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHG-NS 183
Query: 126 IDNCARLCHEASVHALKMTLGA----GVQTNPYSDLENFKAIMIWGYNPAETHPV----- 176
+ A+ L +G+ QT+ L+N K I++WG + +
Sbjct: 184 VGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCP 243
Query: 177 ---VMDYILNAKRKGA----KIIVIDVRETTTMRLADYK----LMINPGTDITLANALMN 225
V +Y K K A ++I ID T+T + + +NP TD+ L AL +
Sbjct: 244 DHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAH 303
Query: 226 VIISEGLYDKEFVRSRTVGFSE---VKMAVKKYTPE---YAEKVTGIEAKLIREVAREFA 279
+ SE LYDK F+ + VGF + + K P+ +AEK+TGI+A+ IR +AR+ A
Sbjct: 304 TLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMA 363
Query: 280 KAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGAL 339
A I+ G + + G + ++ +A +LG +G GG + N GA G
Sbjct: 364 -ANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYN--GAGTPGRK 420
Query: 340 SEFLPGY------VPLTDSTFRKRVASLWGVE---DIPTERGLYLTELWDAILEGEVKAL 390
L G+ P+ D++ K +S + D E G + ++ +K
Sbjct: 421 GVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMC 480
Query: 391 YIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE--GSYM 448
G NP + ++ + L+KLE ++ D T T RFA +LPA E+ Y
Sbjct: 481 IFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYG 540
Query: 449 N-SERRIQWSFKVCDPPGEAKPDWEILSLL------------------------------ 477
N S R I +V P EA+ D++I L
Sbjct: 541 NHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQ 600
Query: 478 --GKELDLPGFP--YEKVEDITEEYFKMFPELAGI----SVEELKNSNGIIIPY-KRLHT 528
G+ + LP F + E + ++ +MF +E L +G+I Y K +
Sbjct: 601 GKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIAD 660
Query: 529 IRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTV----RVMSHYNTGEMTMRSPSLVKL 584
+ + G + + +YPL L +V R+ S E T+R V
Sbjct: 661 MNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESE-TLRQQYTV-- 717
Query: 585 MSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS 624
+ V+I+ DA GI++GD+V+V RG ++ A +S
Sbjct: 718 AGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVS 757
>prf||2117158A DMSO reductase [Rhodobacter sphaeroides]
Length = 777
Score = 120 bits (298), Expect = 5e-26
Identities = 163/679 (24%), Positives = 280/679 (41%), Gaps = 124/679 (18%)
Query: 50 LEFVLSKDRLRYPL---------------KKVGSDFVRIGWDDAIREIASKLREIKERYG 94
L+ + S R++YP+ + DFVR+ W +A+ +A +L+ ++E YG
Sbjct: 46 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWKEALDLVARELKRVQESYG 105
Query: 95 PN-----AIAFIASSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGA 147
P + + + ++ N + L+++ L G N++ + + + + + TL
Sbjct: 106 PTGTFGGSYGWRSPGRLHNCQ-VLMRRALNLAGGFVNSVGDYSTAGAQIIMPYVMGTLEV 164
Query: 148 GVQTNPYSDL-ENFKAIMIWGYNPAETHP---VVMDYILNA-----KRKGAKIIVIDVRE 198
Q + + EN ++ W +P +T+ V+ D+ A K KG ++I I+
Sbjct: 165 YEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVR 224
Query: 199 TTTMRLADY----KLMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVK- 253
T T ADY + P TD+ L + + + SE L+DK+F+ + T GF +
Sbjct: 225 TET---ADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTG 281
Query: 254 -----KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDM 308
T E+A ++ G+ A+ IRE+AR F AG + G + + + ++ +
Sbjct: 282 ESDGTPKTAEWAAEICGLPAEQIRELARSFV-AGRTMLAAGWSIQRMHMAQQAHWMLVTL 340
Query: 309 ALLLGYVGDKGGLYPM-----RGQNNVQGAAYMGALSEF----LPGYVPLTDSTFRKRVA 359
A ++G +G GG + + G + +G +S+ + G L++S
Sbjct: 341 ASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGAKARVEGAACLSES------- 393
Query: 360 SLWGVEDIPTER--GLYLTELWDAILEG------EVKALYIMGENPAVSEANVLKVRKAL 411
G IP R + L + G +VK Y G NP + ++ KA
Sbjct: 394 ---GATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAW 450
Query: 412 QKLELLVVQDLFLTRTARFAHYILPAAAFCEKE-----GSYMNSERRIQWSFKVCDPPGE 466
+KLE +VQD T TAR A +LPA E+ G Y N R I KV DP E
Sbjct: 451 EKLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSN--RAILAMKKVVDPLYE 508
Query: 467 AKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKN----------S 516
A+ D++I + L + L G + + D + F E A + E KN S
Sbjct: 509 ARSDYDIFAALAERLG-KGAEFTEGRD-EMGWISSFYE-AAVKQAEFKNVAMPSFEDFWS 565
Query: 517 NGII-------IPYKRLHTIR-------FQTPDGKARLIA--VEQI--------MPWEQP 552
GI+ + R R TP G + + +E++ W +P
Sbjct: 566 EGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEP 625
Query: 553 -------NGEYPLILTTVRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDG 605
+YPL + S ++ L + I+ +DA GI DG
Sbjct: 626 AERLGGAGAKYPLHVVASHPKSRLHSQLTGTSLRDLYAVAGHEPCLINPADAAARGIADG 685
Query: 606 DLVKVETRRGSIVLKAKIS 624
D+++V RG I++ K+S
Sbjct: 686 DVLRVFNDRGQILVGTKVS 704
>pir||S34222 trimethylamine-N-oxide reductase (EC 1.6.6.9) - Escherichia coli
>gi|806336|emb|CAA52095.1| (X73888)
trimethylamine-N-oxide reductase [Escherichia coli]
Length = 848
Score = 119 bits (296), Expect = 9e-26
Identities = 170/701 (24%), Positives = 292/701 (41%), Gaps = 111/701 (15%)
Query: 24 DPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG---------------S 68
D + + KP++ + K+ GL + V + R+RYP+ +V +
Sbjct: 68 DGRFVAAKPFELDKYPSKMIA-GLP--DHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDN 124
Query: 69 DFVRIGWDDAIREIASKLREIKERYGPNAI----AFIASSKVSNEENYLLQKIARLLGTN 124
FVR+ WD+A+ +L +++ +GP+A+ + ++ N ++IA L N
Sbjct: 125 RFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMRAKRIA--LHGN 182
Query: 125 NIDNCARLCHEASVHALKMTLGA----GVQTNPYSDLENFKAIMIWGYNPAETHPV---- 176
++ A+ L +G+ QT+ L+N K I++WG + +
Sbjct: 183 SVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWC 242
Query: 177 ----VMDYILNAKRKGA----KIIVIDVRETTTMRLADYK----LMINPGTDITLANALM 224
V +Y KRK A ++I ID T+T + + +NP TD+ L AL
Sbjct: 243 PDHDVYEYYAQLKRKSAAGEIEVISIDPVVTSTHEYLGGEHVKHIAVNPQTDVPLQLALA 302
Query: 225 NVIISEGLYDKEFVRSRTVGFSE---VKMAVKKYTPE---YAEKVTGIEAKLIREVAREF 278
+ + SE LYDK F+ + VGF E + K P+ +AEK++GI+A+ IR +AR+
Sbjct: 303 HTLYSENLYDKNFLANYCVGFEEFLPYLLGEKDGQPKDAAWAEKLSGIDAETIRGLARQM 362
Query: 279 AKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGA 338
A A I+ G + + G + ++ +A +LG +G GG + N GA G
Sbjct: 363 A-ANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYN--GAGTPGR 419
Query: 339 LSEFLPGY------VPLTDSTFRKRVASLWGVE---DIPTERGLYLTELWDAILEGEVKA 389
L G+ P+ D++ K +S + D E G + ++ +K
Sbjct: 420 KGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKM 479
Query: 390 LYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE--GSY 447
G NP + ++ + L+ +E ++ D T T RFA +LPA E+ Y
Sbjct: 480 CIFAGTNPFHRHQQINRIIEGLRNVETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQY 539
Query: 448 MN-SERRIQWSFKVCDPPGEAKPDWEILSLL----------------------------- 477
N S R I +V P EA+ D++I L
Sbjct: 540 GNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQ 599
Query: 478 ---GKELDLPGFP--YEKVEDITEEYFKMFPELAGI----SVEELKNSNGIIIPY-KRLH 527
G+ + LP F + E + ++ +MF +E L +G+I Y K +
Sbjct: 600 QGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIA 659
Query: 528 TIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTV----RVMSHYNTGEMTMRSPSLVK 583
+ + G + + +YPL L +V R+ S E T+R V
Sbjct: 660 DMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESE-TLRHEYTV- 717
Query: 584 LMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKIS 624
+ V+I+ DA GI++GD+V+V RG ++ A +S
Sbjct: 718 -AGKEPVFINPQDASARGIRNGDVVRVFNARGQVMAGAVVS 757
>sp|O87948|TORA_SHEMA TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR (TMAO REDUCTASE)
(TRIMETHYLAMINE OXIDASE) >gi|4699615|pdb|1TMO|
Trimethylamine N-Oxide Reductase From Shewanella
Massilia >gi|3327031|emb|CAA06851.1| (AJ006085)
trimethylamine-N-oxide reductase [Shewanella massilia]
Length = 829
Score = 119 bits (295), Expect = 1e-25
Identities = 128/463 (27%), Positives = 208/463 (44%), Gaps = 63/463 (13%)
Query: 70 FVRIGWDDAIREIASKLREIKERYGPNAI-----AFIASSKVSNEENYLLQKIARLLGTN 124
FVR+ WD A+ L E++ +YGP+ + + A+ ++ + +++ + + + N
Sbjct: 114 FVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVG--MHGN 171
Query: 125 NIDNCARLCHEASVHALKMTLGAGVQTNPYSD-------LENFKAIMIWGYNP------- 170
+ A L LG+ T Y+ LE+ I++W +P
Sbjct: 172 YVKKIGDYSTGAGQTILPYVLGS---TEVYAQGTSWPLILEHSDTIVLWSNDPYKNLQVG 228
Query: 171 --AETHPVVMDYI--LNAKRKGAKIIVIDVRETTTMR---LADYKLMINPGTDITLANAL 223
AETH Y+ L K K KI VI + T L +L +NP TD+TL A+
Sbjct: 229 WNAETHESFA-YLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAI 287
Query: 224 MNVIISEGLYDKEFVRSRTVGFSE-------VKMAVKKYTPEYAEKVTGIEAKLIREVAR 276
+ +IS+ LYD +F++ ++GF E K V K TPE+A + G+EA +IR++A+
Sbjct: 288 AHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGVAK-TPEWAAPICGVEAHVIRDLAK 346
Query: 277 EFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGG------LYPMRGQNNV 330
K G M G + + G + +A ++G +G GG Y G +
Sbjct: 347 TLVK-GRTQFMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPS- 404
Query: 331 QGAAYMGALSEFL-PGYVPLTDSTFRKRVASLWGVE---DIPTERGLYLTELWDAILEGE 386
GAA GA L PL DS+ K +S V D E G + ++ +
Sbjct: 405 SGAAAPGAFPRNLDENQKPLFDSSDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPD 464
Query: 387 VKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKE-- 444
+K + G NP + ++++A KLE +V D+ T T RF+ +LPA E+
Sbjct: 465 IKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTVDVNWTATCRFSDIVLPACTTYERNDI 524
Query: 445 ---GSYMNSERRIQWSFKVCDPPGEAKPDWEIL----SLLGKE 480
G+Y N R I K+ +P ++ D+EI ++LGKE
Sbjct: 525 DVYGAYAN--RGILAMQKMVEPLFDSLSDFEIFTRFAAVLGKE 565
>gb|AAA23522.1| (M34827) biotin sulfoxide reductase (bisC) [Escherichia coli]
Length = 726
Score = 114 bits (283), Expect = 3e-24
Identities = 155/678 (22%), Positives = 278/678 (40%), Gaps = 114/678 (16%)
Query: 53 VLSKDRLRYPLKKVG--------------SDFVRIGWDDAIREIASKLREIKERYGPNAI 98
V S R+R+P+ + G +FVR+ WD+A+ I + + I+E YGP +I
Sbjct: 13 VHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASI 72
Query: 99 AFIA----SSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGAG---- 148
+ S+ V ++ + LLQ+ L G T ++ + + +A + +G
Sbjct: 73 FAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQA---IMPYVVGGSEVYQ 129
Query: 149 VQTNPYSDLENFKAIMIWGYNPAETHPVV--------MDYILNAKRKGAKIIVID-VRET 199
QT+ LE+ +++W NP T + + Y + G K+I ID +R
Sbjct: 130 QQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSE 189
Query: 200 TTMRLADYKLMINP--GTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVK---- 253
T D + P GTD+ L + + ++ G +D+ F+ T G++ +
Sbjct: 190 TVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESD 249
Query: 254 --KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALL 311
T E+A ++ G+ A IRE+A F + + +M G G+ + G + ++ +A +
Sbjct: 250 GIAKTAEWAAEICGVGAAKIRELAAIFHQ-NTTMLMAGWGMQRQQFGEQKHWMIVTLAAM 308
Query: 312 LGYVGDKGGLYPM-----RGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVED 366
LG +G GG + + G N + +A + ++ LPG D R+ VE
Sbjct: 309 LGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARI-----VEA 363
Query: 367 IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTR 426
+ G Y + +++ ++ G + ++ +A QK EL+V+ + F T
Sbjct: 364 LENPGGAYQHNGMNRHFP-DIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTA 422
Query: 427 TARFAHYILPAAAFCEKEGSYMN---SERRIQWSFKVCDPPGEAKPDWEILSLL------ 477
A+ A +LPA E+ M S + + +V P EA+ D+++ + L
Sbjct: 423 AAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEK 482
Query: 478 ----------------------------GKELDLPGFP--------YEKVEDITEEYFKM 501
++++LP F E E+ E F
Sbjct: 483 GGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIR 542
Query: 502 F----PELAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYP 557
F P AG + LK I I +R+ + G + ++ W Q N E
Sbjct: 543 FAAFLPRSAG---DPLKTQRKIEIFSQRIADYGYPDCPGHPMWLEPDE---W-QGNAEPE 595
Query: 558 LILTTVRVMSHYNTGEMTMRS-PSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGS 616
+ +H ++ S L + + V I DA++ GI+DGD V++ RG
Sbjct: 596 QLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDAQERGIQDGDTVRLWNARGQ 655
Query: 617 IVLKAKISK-VKEGVIVV 633
I+ A IS+ +K GVI +
Sbjct: 656 ILAGAVISEGIKPGVICI 673
>pir||S47772 biotin sulfoxide reductase (EC 1.-.-.-) 1 - Escherichia coli
>gi|466689|gb|AAB18528.1| (U00039) biotin sulfoxide
reductase [Escherichia coli] >gi|1789973|gb|AAC76575.1|
(AE000432) biotin sulfoxide reductase [Escherichia coli
K12]
Length = 739
Score = 114 bits (283), Expect = 3e-24
Identities = 158/674 (23%), Positives = 287/674 (42%), Gaps = 105/674 (15%)
Query: 53 VLSKDRLRYPLKKVG--------------SDFVRIGWDDAIREIASKLREIKERYGPNAI 98
V S R+R+P+ + G +FVR+ WD+A+ I + + I+E YGP +I
Sbjct: 13 VHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASI 72
Query: 99 AFIA----SSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGAG---- 148
+ S+ V ++ + LLQ+ L G T ++ + + +A + +G
Sbjct: 73 FAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQA---IMPYVVGGSEVYQ 129
Query: 149 VQTNPYSDLENFKAIMIWGYNPAETHPVV--------MDYILNAKRKGAKIIVID-VRET 199
QT+ LE+ +++W NP T + + Y + G K+I ID +R
Sbjct: 130 QQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSE 189
Query: 200 TTMRLADYKLMINP--GTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVK---- 253
T D + P GTD+ L + + ++ G +D+ F+ T G++ +
Sbjct: 190 TVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESD 249
Query: 254 --KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALL 311
T E+A ++ G+ A IRE+A F + + +M G G+ + G + ++ +A +
Sbjct: 250 GIAKTAEWAAEICGVGAAKIRELAAIFHQ-NTTMLMAGWGMQRQQFGEQKHWMIVTLAAM 308
Query: 312 LGYVGDKGGLYPM-----RGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVED 366
LG +G GG + + G N + +A + ++ LPG D R+ VE
Sbjct: 309 LGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARI-----VEA 363
Query: 367 IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTR 426
+ G Y + +++ ++ G + ++ +A QK EL+V+ + F T
Sbjct: 364 LENPGGAYQHNGMNRHFP-DIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTA 422
Query: 427 TARFAHYILPAAAFCEKEGSYMN---SERRIQWSFKVCDPPGEAKPDWEILSLLGKELDL 483
A+ A +LPA E+ M S + + +V P EA+ D+++ + L + +
Sbjct: 423 AAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEK 482
Query: 484 PG---FPYEKVEDITEEYFKMFPELAGISVE-------ELKNSNGIIIPYKRLHTIRF-- 531
G F K E E F G S + E +N +I + + RF
Sbjct: 483 GGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIR 542
Query: 532 -------------QTPDGKARLIAVEQIMPWEQPN-GEYPLIL-----------TTVRVM 566
+T GK + + ++I + P+ +P+ L ++V+
Sbjct: 543 FADFCRDPLAHPLKTASGKIEIFS-QRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVL 601
Query: 567 SHYNTGEM--TMRSPSLVKLMS----EPVVYISESDAKKYGIKDGDLVKVETRRGSIVLK 620
S + + + SL +L + EPV I DA++ GI+DGD V++ RG I+
Sbjct: 602 SAHPAHRLHSQLNYSSLRELYAVANREPVT-IHPDDAQERGIQDGDTVRLWNARGQILAG 660
Query: 621 AKISK-VKEGVIVV 633
A IS+ +K GVI +
Sbjct: 661 AVISEGIKPGVICI 674
>sp|P20099|BISC_ECOLI BIOTIN SULFOXIDE REDUCTASE 1 (BDS REDUCTASE 1) (BSO REDUCTASE 1)
Length = 777
Score = 114 bits (283), Expect = 3e-24
Identities = 158/674 (23%), Positives = 287/674 (42%), Gaps = 105/674 (15%)
Query: 53 VLSKDRLRYPLKKVG--------------SDFVRIGWDDAIREIASKLREIKERYGPNAI 98
V S R+R+P+ + G +FVR+ WD+A+ I + + I+E YGP +I
Sbjct: 51 VHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASI 110
Query: 99 AFIA----SSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGAG---- 148
+ S+ V ++ + LLQ+ L G T ++ + + +A + +G
Sbjct: 111 FAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQA---IMPYVVGGSEVYQ 167
Query: 149 VQTNPYSDLENFKAIMIWGYNPAETHPVV--------MDYILNAKRKGAKIIVID-VRET 199
QT+ LE+ +++W NP T + + Y + G K+I ID +R
Sbjct: 168 QQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSE 227
Query: 200 TTMRLADYKLMINP--GTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVK---- 253
T D + P GTD+ L + + ++ G +D+ F+ T G++ +
Sbjct: 228 TVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESD 287
Query: 254 --KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALL 311
T E+A ++ G+ A IRE+A F + + +M G G+ + G + ++ +A +
Sbjct: 288 GIAKTAEWAAEICGVGAAKIRELAAIFHQ-NTTMLMAGWGMQRQQFGEQKHWMIVTLAAM 346
Query: 312 LGYVGDKGGLYPM-----RGQNNVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVED 366
LG +G GG + + G N + +A + ++ LPG D R+ VE
Sbjct: 347 LGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARI-----VEA 401
Query: 367 IPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTR 426
+ G Y + +++ ++ G + ++ +A QK EL+V+ + F T
Sbjct: 402 LENPGGAYQHNGMNRHFP-DIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTA 460
Query: 427 TARFAHYILPAAAFCEKEGSYMN---SERRIQWSFKVCDPPGEAKPDWEILSLLGKELDL 483
A+ A +LPA E+ M S + + +V P EA+ D+++ + L + +
Sbjct: 461 AAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEK 520
Query: 484 PG---FPYEKVEDITEEYFKMFPELAGISVE-------ELKNSNGIIIPYKRLHTIRF-- 531
G F K E E F G S + E +N +I + + RF
Sbjct: 521 GGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIR 580
Query: 532 -------------QTPDGKARLIAVEQIMPWEQPN-GEYPLIL-----------TTVRVM 566
+T GK + + ++I + P+ +P+ L ++V+
Sbjct: 581 FADFCRDPLAHPLKTASGKIEIFS-QRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVL 639
Query: 567 SHYNTGEM--TMRSPSLVKLMS----EPVVYISESDAKKYGIKDGDLVKVETRRGSIVLK 620
S + + + SL +L + EPV I DA++ GI+DGD V++ RG I+
Sbjct: 640 SAHPAHRLHSQLNYSSLRELYAVANREPVT-IHPDDAQERGIQDGDTVRLWNARGQILAG 698
Query: 621 AKISK-VKEGVIVV 633
A IS+ +K GVI +
Sbjct: 699 AVISEGIKPGVICI 712
>sp|Q9XAR0|NUOG_STRCO NADH DEHYDROGENASE I CHAIN G (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
G) >gi|7480290|pir||T34618 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain nuoG - Streptomyces
coelicolor >gi|5042271|emb|CAB44525.1| (AL078618) nuoG,
NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 843
Score = 112 bits (278), Expect = 1e-23
Identities = 153/684 (22%), Positives = 259/684 (37%), Gaps = 145/684 (21%)
Query: 11 VCPYCGFGCNLLIDPKTLKVK----PYKGEPNRGKLCPKGLHALEFVLSKDRLRYPL-KK 65
VC +C GC D + KV + E N +C KG + +DRL PL +
Sbjct: 244 VCEHCSGGCATRTDHRRGKVMRRLAANEPEVNEEWICDKGRFGFRYAQQRDRLTTPLVRN 303
Query: 66 VGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARL-LGTN 124
+ W +A++ A L + R G + +++ E+ Y K AR+ L TN
Sbjct: 304 AEGELEPASWPEALQIAAQGLLASRGRTG-----VLTGGRLTVEDAYAYSKFARVALDTN 358
Query: 125 NIDNCARL--CHEASVHALKMT-----LGAGVQTNP-------YSDLENFKAIMIWGYNP 170
+ID AR+ EA A + LG +T Y+ LE A+++ G+
Sbjct: 359 DIDFRARVHSAEEADFLAAHVAGRGRDLGGSSRTESGGGAGVTYTSLEKAPAVLLVGFEA 418
Query: 171 AETHPVVMDYILNAKRK-GAKIIVIDVRETTTMRLADYKLM-INPGTDITLANALMNVI- 227
E P V + A RK G K+ + T + A L+ PGT+ +AL + +
Sbjct: 419 EEEAPGVFLRLRKAWRKHGQKVFSLATHATRGLEKAGGTLLPAAPGTETEWLDALASGVG 478
Query: 228 ISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM 287
+ EG G +A E +A I+
Sbjct: 479 LEEG---------------------------------GTQAA-------EALRAEGAVIV 498
Query: 288 WGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYV 347
G L G+ + + G + P R +GA GAL LPG
Sbjct: 499 VGERLASVAGGLTSAVRTS------AATGARLVWIPRRAGE--RGAIEAGALPSLLPGGR 550
Query: 348 PLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKV 407
P TD R+ VA+LWG+ D+P G E+ +A GE++AL + G A + +
Sbjct: 551 PATDPRAREEVAALWGLADLPHRYGRDTGEIVEAAARGELQALLVAGVEVA-DLPDPTRA 609
Query: 408 RKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGE- 466
R AL + +V +L + + A +LP AA EK G+++N E R+++ F+ P +
Sbjct: 610 RAALDEAGFVVSLELRPSEVSERADVVLPVAAVAEKPGTFLNWEGRVRF-FEAALKPDQM 668
Query: 467 ----AKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPELAGISVEELKNSNGIIIP 522
A D +L +L +D
Sbjct: 669 TRRLAPTDARVLQMLADAMD---------------------------------------- 688
Query: 523 YKRLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPL--------------ILTTVRVMSH 568
+ PD + ++++ W+ P PL +L R++
Sbjct: 689 ------VHLGLPDLRTTRAEIDRLGAWDGPRAGEPLQTASALPRPAAGEAVLAGHRLL-- 740
Query: 569 YNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISKVKE 628
+ G + +L +S + A + G+KDGD++ V G++ L +++++ +
Sbjct: 741 LDQGLLQQGDEALAGTRHAARARLSAATAAEAGVKDGDVLAVTGPAGAVELPLQVTEMPD 800
Query: 629 GVIVVPFHFDANILTNDALNKAGT 652
V+ +P + + + +DA GT
Sbjct: 801 RVVWLPLNSAGSGVASDAGVLPGT 824
>pir||D81349 nitrate reductase (EC 1.7.99.4), periplasmic Cj0780 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968226|emb|CAB73045.1| (AL139076) periplasmic
nitrate reductase [Campylobacter jejuni]
Length = 924
Score = 111 bits (275), Expect = 3e-23
Identities = 70/261 (26%), Positives = 119/261 (44%), Gaps = 21/261 (8%)
Query: 9 RVVCPYCGFGCNLLIDPKTLKVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYPLK 64
+ VC +CG GC ++I K K+ KG+P NRG C KG + + +DRL PL
Sbjct: 39 KAVCRFCGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLL 98
Query: 65 KVGSD--------FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQK 116
++ F ++ W A E+ + ++ G I S + + +E Y K
Sbjct: 99 RMNEKGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALK 158
Query: 117 IARL-LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHP 175
+A+ TNNID AR C ++V T G + Y D+E I+ WG N AE HP
Sbjct: 159 LAKAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP 218
Query: 176 VVMDYILNAKRKG---AKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVII--SE 230
++ + + K K++ + T +AD +++ P TD+ + N + I+
Sbjct: 219 ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYNHP 278
Query: 231 GLYDKEFVRSRTV---GFSEV 248
D +F++ V G++++
Sbjct: 279 EAMDMKFIKDHCVFATGYADI 299
Score = 81.9 bits (199), Expect = 2e-14
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 15/145 (10%)
Query: 516 SNGIIIPYK--RLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGE 573
+NG +I K + H+I+ KA++ + E+P+ EYP L T RV+ H+++G
Sbjct: 771 TNGDLIAPKDEKEHSIK-----NKAKIFFRPFMKAPERPSKEYPFWLATGRVLEHWHSGT 825
Query: 574 MTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKI-----SKVKE 628
MTMR P L + + E + Y+SE D +K G+ GDLV VE+RRG + KA++ +K
Sbjct: 826 MTMRVPELYRAVPEALCYMSEKDGEKLGLNQGDLVWVESRRGKV--KARVDMRGRNKPPV 883
Query: 629 GVIVVPFHFDANILTNDALNKAGTP 653
G++ VP+ FD N+ N A P
Sbjct: 884 GLVYVPW-FDENVYINKVTLDATCP 907
Score = 74.5 bits (180), Expect = 3e-12
Identities = 72/261 (27%), Positives = 118/261 (44%), Gaps = 21/261 (8%)
Query: 230 EGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIE--------AKLIREVAREFAKA 281
+G+ DK + + F E K + YT EY +V + K ++E+A + +
Sbjct: 352 QGVADKNW----EISFDEFKKGLAPYTLEYTARVAKGDDNESLEDFKKKLQELANLYIEK 407
Query: 282 GSGAI-MWGMGLTQHVSGVENVIAVIDMALLLGYVGDKG-GLYPMRGQNNVQGAAY-MGA 338
+ W MG QH G + LLG G G + + GQ + G A +G
Sbjct: 408 NRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAFSLTGQPSACGTAREVGT 467
Query: 339 LSEFLPGYVPLTDSTFRKRVASLWGV--EDIPTERGLYLTELWDAILEGEVKALYIMGEN 396
S LP + + + R+ +W V + I + G + + +G++K ++ N
Sbjct: 468 FSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLNIMRDLEDGKIKFAWVQVNN 527
Query: 397 PAVSEANVLKVRKALQKLE-LLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQ 455
P + AN A ++++ +VV D + +A+ A ILP+A EK G+Y N+ERR Q
Sbjct: 528 PWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLILPSAMIYEKWGAYGNAERRTQ 587
Query: 456 -WSFKVCDPPGEAKPD-WEIL 474
W +V P G A D W+IL
Sbjct: 588 HWKQQVL-PVGAAMSDTWQIL 607
>pir||H82137 biotin sulfoxide reductase VC1950 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656488|gb|AAF95098.1|
(AE004270) biotin sulfoxide reductase [Vibrio cholerae]
Length = 815
Score = 108 bits (268), Expect = 2e-22
Identities = 150/678 (22%), Positives = 287/678 (42%), Gaps = 104/678 (15%)
Query: 53 VLSKDRLRYPLKKVG--------------SDFVRIGWDDAIREIASKLREIKERYGPNAI 98
V ++ R++YP+ + G +FVR+ WDDA R I + I++ YGP ++
Sbjct: 81 VYTQARVKYPMVRKGFLANPAAPKGVRGSDEFVRVSWDDAYRLIHEQHMRIRKTYGPASV 140
Query: 99 AFIA----SSKVSNEENYLLQKIARLLG--TNNIDNCARLCHEASVHALKMTLGAGVQTN 152
+ SS V ++ LLQ+ + G + ++ + + + + + ++ Q
Sbjct: 141 FAGSYGWRSSGVLHKAQTLLQRYMSMAGGYSGHLGDYSTGAAQIIMPHVVGSIEVYEQQT 200
Query: 153 PYS-DLENFKAIMIWGYNPAETHPVV--------MDYILNAKRKGAKIIVID-VRETTTM 202
Y LE+ +++WG NP T + +++ K+ G II ID +R T
Sbjct: 201 TYPVVLEHSDVVVLWGLNPINTLKIAWSSTDCAGLEFFHQLKKSGKTIIGIDPIRSETIE 260
Query: 203 RLADYKLMI--NPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKM-------AVK 253
+ I +P TD+ + + + +I +G +DK F+ TVG+ + V+
Sbjct: 261 FFGEQAQWIAPHPMTDVAMMMGIAHSLIKQGKHDKAFLDKYTVGYDRFEAYLLGKEDGVE 320
Query: 254 KYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLG 313
K + ++AE + G+ AK + +A F+ + +M G G+ + G + V+ +A +LG
Sbjct: 321 K-SAQWAEGICGVPAKQLETLAEIFSNHRT-MLMAGWGMQRQQYGEQRHWMVVTLAAMLG 378
Query: 314 YVGDKGG-----LYPMRGQNNVQGAAYMGALSEFLPGYV------PLTDSTFRKRVASLW 362
+G GG + G N + A + A+S + G ++ +T VA +
Sbjct: 379 QIGLPGGGFGFSYHYSNGGNPARDAGVLPAISAAIGGGSSAGNDWAISGATQSFPVARI- 437
Query: 363 GVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLELLVVQDL 422
VE + G Y + E+K ++ G + ++ KA QK EL+V+ +
Sbjct: 438 -VEALENPGGAY-QHNGHTLTFPEIKMIWWAGGANFTHHQDTNRLIKAWQKPELIVISEP 495
Query: 423 FLTRTARFAHYILPAAAFCEKEGSYMN---SERRIQWSFKVCDPPGEAKPDWEILSLLGK 479
+ T A+ A +LP E+ M S + + +V +P GEA+ D+++ + +
Sbjct: 496 YWTAAAKHADIVLPITTTFERNDLTMTGDYSNQHLVPMKQVVEPQGEARNDFDVFADMA- 554
Query: 480 ELDLPGFPYEKVEDITE-EYFKMFPELAGIS----------VEELKNSNGII---IPYKR 525
E+ PG E TE E+ F + A S + N +I K
Sbjct: 555 EMIRPGGRDVFTEGKTEMEWLYGFYKTAQKSGRAARVAMPNFSKFWEDNQLIEMKWNAKN 614
Query: 526 LHTIRFQ------------TPDGKARLIAVEQIMPWEQPN-GEYPLILTTVRVMSHYNTG 572
+R+ TP GK + + + + + P+ +P L + G
Sbjct: 615 AQFVRYADFRADPILNPLGTPSGKIEIYS-KTLAGFNLPDCPAHPTWLAPDEFTGNAKQG 673
Query: 573 EMTMRSP----------SLVKLMSEPVV------YISESDAKKYGIKDGDLVKVETRRGS 616
E+ + + + +L E + +I DA GI+ GDLV+ +RG
Sbjct: 674 ELQLMTAHAAHRLHSQFNYAQLREEYAIANREPIWIHPEDAASRGIQTGDLVRAYNQRGQ 733
Query: 617 IVLKAKIS-KVKEGVIVV 633
+++ A ++ ++K+G + +
Sbjct: 734 VLVGALVTDRIKQGSVCI 751
>gb|AAG19284.1| (AE005024) dimethylsulfoxide reductase; DmsA [Halobacterium sp.
NRC-1]
Length = 837
Score = 106 bits (262), Expect = 8e-22
Identities = 83/265 (31%), Positives = 128/265 (47%), Gaps = 26/265 (9%)
Query: 2 FIG-DRVIRVVC-PYCGFGCNLLIDPKTLKVKPYKGEPNRGKL----CPKGLHALEFVLS 55
F+G D+V++ C P C C L + + ++K + + K C G+ L+ V +
Sbjct: 49 FLGEDQVVKTACSPNCRGKCPLDVFVRDGQIKKVEQQVPAAKTFKRGCTLGMTHLQRVYN 108
Query: 56 KDRLRYPLKKV------------GSD--FVRIGWDDAIREIASKLREIKERYGPNAIAFI 101
DRL+YP+K+ G+D F RI WDDA+ +A ++ K YGP ++ +
Sbjct: 109 ADRLKYPMKRTSWSPDDPQPDQRGADAQFERIAWDDALDLVADGIQRAKREYGPRSLLWH 168
Query: 102 ASSKVSNEENYLLQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGV---QTNPYSDLE 158
+ S Y +++ L+G D + ++T GV TN D
Sbjct: 169 SGSGDGGITGY--RRLKELVGGLQDDFTYGIDTNVGQGFNRVTGEGGVFMPPTNTADDWV 226
Query: 159 NFKAIMIWGYNP-AETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDI 217
N + I+IWG + A + ++IL+AKR GAK++V+D T T AD L I PG D
Sbjct: 227 NAETIIIWGSDIFASQFQMDAEWILDAKRNGAKLVVVDPVYTNTAEKADLWLPIKPGKDT 286
Query: 218 TLANALMNVIISEGLYDKEFVRSRT 242
LA A+M I YD+ F+RSRT
Sbjct: 287 HLALAMMQYIFEHDHYDEAFLRSRT 311
>sp|Q60314|FDHA_METJA PUTATIVE FORMATE DEHYDROGENASE ALPHA CHAIN >gi|2127906|pir||F64300
formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanococcus jannaschii >gi|1498763|gb|AAB97987.1|
(U67459) formate dehydrogenase, alpha subunit
[Methanococcus jannaschii]
Length = 378
Score = 104 bits (258), Expect = 2e-21
Identities = 70/228 (30%), Positives = 115/228 (49%), Gaps = 20/228 (8%)
Query: 6 RVIRVVCPYCGFGCNLLI---DPKTLKVKPYKGEP-NRGKLCPKGLHALEFVLSKDRLRY 61
+V+ +CP C GC + + D K + PYK P N GK C G ++ + + + RL+
Sbjct: 2 KVVHTICPGCSVGCGIDLIVKDDKVVGTYPYKRHPINEGKNCSNGKNSYKIIYHEKRLKK 61
Query: 62 PLKKVGSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLL 121
PL K V WD+A+ IA KL+ Y + I FIAS K +NE+NY L+K+ L
Sbjct: 62 PLIKKNGKLVEATWDEALSFIAEKLK----NYNADDITFIASGKCTNEDNYALKKLVDSL 117
Query: 122 GTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMDYI 181
I +C +C+ V+ ++ + D+EN K I+I G + H ++ +
Sbjct: 118 KA-KIGHC--ICNSPKVNYAEV-------STTIDDIENAKNIIIIG-DVFSEHALIGRKV 166
Query: 182 LNAKRKGAKIIVIDVRETTTMRL-ADYKLMINPGTDITLANALMNVII 228
+ AK KG+K+ + + E ++L AD + ++ + L+N N II
Sbjct: 167 IKAKEKGSKVTIFNTEEKEILKLNADEFVKVDSYLGVDLSNVDKNTII 214
Score = 88.2 bits (215), Expect = 3e-16
Identities = 45/110 (40%), Positives = 70/110 (62%), Gaps = 7/110 (6%)
Query: 388 KALYIMGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSY 447
K LYIMGENPA+ + +VLK +E LVVQD+ +T TA A +LP+ + EK+G++
Sbjct: 269 KFLYIMGENPALVDKDVLK------NVEFLVVQDIIMTETAEMADVVLPSTCWAEKDGTF 322
Query: 448 MNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITEE 497
+N+++RIQ K +PPG+A DW I+ L ++L + +EDI ++
Sbjct: 323 INTDKRIQKINKAVNPPGDAMDDWLIIKSLAEKLG-SDLGFNSLEDIQQD 371
>emb|CAA67410.1| (X98916) beta-subunit of formylmethanofuran dehydrogenase
[Methanopyrus kandleri]
Length = 434
Score = 95.2 bits (233), Expect = 2e-18
Identities = 130/497 (26%), Positives = 200/497 (40%), Gaps = 83/497 (16%)
Query: 3 IGDRVIR-VVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRY 61
+G +VI+ VVCP+CG C+ L+V GE + + + A +F+ +++ R+
Sbjct: 1 MGRKVIKDVVCPFCGTLCD------DLEVVVEDGEIVEVRHACR-IGAAKFLTAQEDHRH 53
Query: 62 --PLKKVGSDFVRIGWDDAIREIASKLREIKE--RYGPNAIAFIASSKVSNEENYLLQKI 117
P+ K ++ +I ++DA E A L E K YG S E + + +I
Sbjct: 54 TEPMIKENGEWKKIDYEDAAEETARILVEAKWPLMYG--------WSSTLCEAHEVGIEI 105
Query: 118 ARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMI-WGYNPAETHPV 176
A +G IDN A +CH S L+ AGV + +++N ++I WG NP HP
Sbjct: 106 AEKVGAV-IDNTASVCHGPSTLGLQ---DAGVPSCTLGEVKNRADVIIYWGCNPMHAHPR 161
Query: 177 VMD--------YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVII 228
M + R+ IIV+D R T T LAD L + P D L +AL +
Sbjct: 162 HMSRYTAFTRGFFRPKGREDRTIIVVDPRRTATAELADVHLQVRPNEDYELISALRAAV- 220
Query: 229 SEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMW 288
+ E R E+V GI + + EVA +A G + W
Sbjct: 221 ----HGIEIER---------------------EEVAGIPVEAVHEVADLIKEASFGTLFW 255
Query: 289 GMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVP 348
GMG+T N+ I + L K L MRG NV G + + P V
Sbjct: 256 GMGITMSRGRHRNIDNAICLIRDLNEYA-KWTLIMMRGHYNVTGFNEVLTWTTGYPFAVD 314
Query: 349 LTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVR 408
+ R V D ++ GEV A +++ +P R
Sbjct: 315 FSRGYPRYNPGEFSAV---------------DVLIRGEVDAAFVIASDPGAHFP-----R 354
Query: 409 KALQKLEL--LVVQDLFLTRTARFAHYILPAA-AFCEKEGSYMNSERRIQWSFKVCDPPG 465
KA++ + LV D T TA A +P A E EG+ + KV +PP
Sbjct: 355 KAVEHMAWIPLVCVDPHWTPTAELADLYVPVTIAGIEWEGTAYRMDSVPIRMRKVVEPPE 414
Query: 466 EAKPDWEILSLLGKELD 482
D E L ++ ++++
Sbjct: 415 SMLNDVEFLEMVIEKVE 431
>emb|CAA67419.1| (X98917) formylmethanofuran dehydrogenase FwuB [Methanopyrus
kandleri]
Length = 433
Score = 90.9 bits (222), Expect = 4e-17
Identities = 129/489 (26%), Positives = 196/489 (39%), Gaps = 82/489 (16%)
Query: 10 VVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRY--PLKKVG 67
VVCP+CG C+ L+V GE + + + A +F+ +++ R+ P+ K
Sbjct: 9 VVCPFCGTLCD------DLEVVVEDGEIVEVRHACR-IGAAKFLTAQEDHRHTEPMIKEN 61
Query: 68 SDFVRIGWDDAIREIASKLREIK--ERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNN 125
++ +I ++DA E A L E K YG +A A K ++A L+G
Sbjct: 62 GEWKKIDYEDAAEETAKMLVEAKLPVLYGWSATLVEAQEKGV--------ELAELVG-GI 112
Query: 126 IDNCARLCHEASVHALKMTLGAGVQTNPYSDLEN-FKAIMIWGYNPAETHPVVMD----- 179
IDN A + H SV L+ GV + +++N ++ WG NP HP M
Sbjct: 113 IDNTASVXHGPSVLGLQ---DVGVPSCTLGEVKNRADTVIYWGSNPMHAHPRHMSRYTAF 169
Query: 180 ---YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKE 236
+ R+ IIV+D R+T T RLAD + + P D L +AL + + E
Sbjct: 170 TRGFFRPKGREDRTIIVVDPRKTATARLADVYIRVRPNEDYELISALRAAV-----HGIE 224
Query: 237 FVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHV 296
R E+V G+ + I EVA +A G + W MGLT
Sbjct: 225 IER---------------------EEVAGVPTEQIYEVADLIKEASFGTLFWAMGLTMSR 263
Query: 297 SGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGALSEFLPGYVPLTDSTFRK 356
N+ I + L K L MRG NV G + A + P V + R
Sbjct: 264 GRHRNIDNAICLIKDLNEY-TKWTLIMMRGHYNVTGFNEVLAWTTGYPYAVDFSRGYPRY 322
Query: 357 RVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVRKALQKLEL 416
P E T D + GEV A+ ++ +P RKA++ +
Sbjct: 323 N----------PGE-----TSTVDLLTRGEVDAMMVIASDPGAHFP-----RKAVEHMAR 362
Query: 417 --LVVQDLFLTRTARFAHYILPAA-AFCEKEGSYMNSERRIQWSFKVCDPPGEAKPDWEI 473
LV D T TA A +P A E EG+ + KV +PP D E
Sbjct: 363 IPLVCVDPHWTPTAELADLYVPVTIAGIEWEGTAYRMDSVPIRMRKVVEPPESMLNDVEF 422
Query: 474 LSLLGKELD 482
L ++ ++++
Sbjct: 423 LEMVIEKVE 431
>pir||E70916 probable bisC protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2131054|emb|CAB09264.1| (Z95844) bisC [Mycobacterium
tuberculosis]
Length = 766
Score = 89.3 bits (218), Expect = 1e-16
Identities = 155/687 (22%), Positives = 273/687 (39%), Gaps = 119/687 (17%)
Query: 69 DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVS-NEENYLLQKIARLLGTNNID 127
+FV + WD+ I +AS+LR +RYG AI + S ++ ++ R L N +
Sbjct: 75 EFVEVSWDELIELLASELRRTVDRYGNEAIYGSSYGWASAGRFHHAQSQVHRFL--NMLG 132
Query: 128 NCARLCHEASVHALKMT----LGAGV-----QTNPYSDLENFKAIMI-WGYNPAETHPVV 177
H S A ++ +GA + +T + + + A+++ +G P + V+
Sbjct: 133 GYTASRHSYSAGASEVIFPHIVGAALFEALAETTTWDVIVDHTALLVAFGGLPVKNTAVM 192
Query: 178 ---------MDYILNAKRKGAKIIVIDVRETTTMRLADYK------LMINPGTDITLANA 222
DY+ + +G +++ + +A L PGTD+ +
Sbjct: 193 PGGTTAHPDRDYVGRYRARGGRLVSVSPLRDDIAAIAGPLDDRCRWLAPVPGTDVAIMLG 252
Query: 223 LMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKY------TPEYAEKVTGIEAKLIREVAR 276
L V+ +E L D+ F+ G+ + + TPE+A ++G+ A +R++AR
Sbjct: 253 LAYVLATESLADRAFLGRYCTGYERFERYLLGLDDGIPKTPEWAAALSGLAAGDLRDLAR 312
Query: 277 EFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGL----YPMRGQNNVQG 332
A+ + I + L + G + V +A +LG +G GG Y G N
Sbjct: 313 RMAEHRT-LITTSLSLQRIEHGEQTVWMAATLAAMLGQIGLPGGGFGHGYSSNGVGNPPL 371
Query: 333 AAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYI 392
A + AL + G P+ STF VA++ + P +R Y L + ++K +Y
Sbjct: 372 ACGLPALPQ---GNNPV--STFIP-VAAISELLQRPGQRLAYNGRLLEL---PDIKCVYW 422
Query: 393 MGENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSER 452
G NP N+ ++R+AL +++ +VV + + T A+ A ++P E++ +
Sbjct: 423 AGGNPFHHHQNLPRLRRALSRVDTIVVHEQYWTAMAKHADIVVPTTTSFERDDFAASKTN 482
Query: 453 RIQWSFKVCDPP-GEAKPDWEILSLLGKELDLPGFPYEKVED------ITEEYFKMFPEL 505
+ PP A+ D+ S L L GF + E + Y K EL
Sbjct: 483 PTLIAMPAMVPPYANARDDYHTFSALAHRL---GFGKQFTEGRSAREWLEHMYDKWSAEL 539
Query: 506 --AGISVEELKNSNGIIIPYKR----LHTIR-------FQTPDGKARLIA--VEQIM--- 547
S E + + +P + L R TP G+ + + V+
Sbjct: 540 DFPVPSFAEFWRTGRLELPTRTGLTWLADFRADPAAHPLGTPSGRIEIFSDTVDAFALPD 599
Query: 548 -----PWEQPN--------GEYPLILTT----VRVMSHYNTGEMTMRSPSLVKLMSEPVV 590
W +P+ YPL L R+ S + G +M S K+ +
Sbjct: 600 CAGHPTWYEPSEWLGGPRAARYPLHLIANQPRTRLHSQLDHGGASMAS----KIRGREPI 655
Query: 591 YISESDAKKYGIKDGDLVKVETRRGSIV--------LKAKISKVKEGVIVVP-------- 634
I DA + DGD+V+V RG+ + L+ K+ ++ G P
Sbjct: 656 RIHPDDAAARELTDGDIVRVFNDRGACLAGVVIDDGLRPKVVQLSTGAWFDPADPRDPDS 715
Query: 635 --FHFDANILTNDALNKAGTPELKYSS 659
H + N L+ND +GT L + S
Sbjct: 716 MCVHGNPNALSND----SGTSSLAHGS 738
>gi|11499513 tungsten formylmethanofuran dehydrogenase, subunit B (fwdB-2)
[Archaeoglobus fulgidus] >gi|7447585|pir||H69490
formylmethanofuran dehydrogenase (tungsten) chain B
homolog (fwdB-2) - Archaeoglobus fulgidus
>gi|2648615|gb|AAB89326.1| (AE000970) tungsten
formylmethanofuran dehydrogenase, subunit B (fwdB-2)
[Archaeoglobus fulgidus]
Length = 421
Score = 88.2 bits (215), Expect = 3e-16
Identities = 90/339 (26%), Positives = 146/339 (42%), Gaps = 59/339 (17%)
Query: 8 IRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVG 67
+ +VC +CG C D V+ +K + KLC G K+R++ P+
Sbjct: 5 VNLVCTFCGSVC----DDGQFDVEQFKSK----KLCKLGSAKFS---KKERIKAPM---- 49
Query: 68 SDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNID 127
D + +++AI + A L K+ + + +S V NE L + +G D
Sbjct: 50 IDGKEVSYEEAIEKAAEILVNAKK-----PLLYGWASTV-NEAIRLGVILTEKVG-GVYD 102
Query: 128 NCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMI-WGYNPAETHPVV-MDYILNAK 185
CA +CH A+ + G+ ++N +++ WG NP E HP M Y ++AK
Sbjct: 103 QCASVCHAPGTLAV---IEEGLPGGTLGAIKNRADVVVFWGANPMEAHPRHGMRYSISAK 159
Query: 186 ------RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVR 239
RK K+IV+DVR T T +LAD + I PG D + +AL +I
Sbjct: 160 GLLIKDRKQRKVIVVDVRPTKTAKLADEFIQIKPGYDYPIISALRAIISGN--------- 210
Query: 240 SRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGV 299
++V G+ + + E+A A GA+++G+G+TQ
Sbjct: 211 ----------------ADAVPDEVGGVSKEKLVELAETMKNAKYGAVLYGLGVTQSRGRD 254
Query: 300 ENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQGAAYMGA 338
NV + + LL + ++PMRG NV GA + A
Sbjct: 255 RNVENAVKLIQLLNR-HTRWVIWPMRGHYNVVGAGEVPA 292
>pir||S57458 formylmethanofuran dehydrogenase (EC 1.2.99.5) (tungsten) chain B -
Methanobacterium thermoautotrophicum (strain Marburg)
>gi|2127684|pir||S63547 formylmethanofuran dehydrogenase
(EC 1.2.99.5) tungsten chain B - Methanobacterium
thermoautotrophicum >gi|1890212|emb|CAA61215.1| (X87970)
tungsten formylmethanofuran dehydrogenase
[Methanobacterium thermoautotrophicum]
Length = 424
Score = 84.3 bits (205), Expect = 4e-15
Identities = 95/341 (27%), Positives = 143/341 (41%), Gaps = 64/341 (18%)
Query: 7 VIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNR--GKLCPKGLHALEFVLSKDRLRY--P 62
V VVCP+CG C+ +I K E N G + + +FV ++ +RY P
Sbjct: 4 VKNVVCPFCGTLCDDII---------CKVEDNEIVGTINACRIGHSKFVHAEGAVRYKKP 54
Query: 63 LKKVGSDFVRIGWDDAIREIASKLREIKE--RYGPNAIAFIASSKVSNEENYLLQKIARL 120
L + +FV + +D+AI + A L E K YG S E + ++A
Sbjct: 55 LIRKNGEFVEVSYDEAIDKAAKILAESKRPLMYG--------WSCTECEAQAVGVELAEE 106
Query: 121 LGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMI-WGYNPAETHPVVMD 179
G IDN A +CH SV AL+ G + +++N +++ WG NP HP M
Sbjct: 107 AGAV-IDNTASVCHGPSVLALQ---DVGYPICTFGEVKNRADVVVYWGCNPMHAHPRHMS 162
Query: 180 YILNAK-------RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVII-SEG 231
+ A+ R +IV+D R+T + +LAD L ++ D L +A+ ++ +E
Sbjct: 163 RNVFARGFFRERGRSDRTLIVVDPRKTDSAKLADIHLQLDFDRDYELLDAMRAYLLGNEI 222
Query: 232 LYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMG 291
LYD+ V G+ + I E KA G + +GMG
Sbjct: 223 LYDE---------------------------VAGVPREQIEEAVEVLKKAQFGILFFGMG 255
Query: 292 LTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG 332
+T N+ I M L K L PMRG NV G
Sbjct: 256 ITHSRGKHRNIDTAIMMVEDLNDYA-KWTLIPMRGHYNVTG 295
>pir||S62201 formylmethanofuran dehydrogenase (EC 1.2.99.5) (molybdenum) chain B
- Methanosarcina barkeri >gi|1124964|emb|CAA63633.1|
(X93084) molybdenum formylmethanofuran dehydrogenase
subunit fmdB [Methanosarcina barkeri]
>gi|1587241|prf||2206350J formylmethanofuran
dehydrogenase [Methanosarcina barkeri]
Length = 433
Score = 81.9 bits (199), Expect = 2e-14
Identities = 85/353 (24%), Positives = 137/353 (38%), Gaps = 57/353 (16%)
Query: 10 VVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKVGSD 69
+VCP CG C+ ++V+ G+ C G + V+S RLR PL K
Sbjct: 6 IVCPVCGAACD------DIQVEFGDGKIEAKNACKMGNAKFQEVVSSHRLRQPLIKSEGK 59
Query: 70 FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNIDNC 129
WD+A+ A L K S+ S E + + K+ LG +D+
Sbjct: 60 LTPAAWDEALERAADILVSAKRPL------LFMGSETSCEAHEIGLKLGEYLGAI-VDSN 112
Query: 130 ARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAETHPVVMD--------YI 181
A +CH + ++ + G + + ++ WG NP E+ P M Y
Sbjct: 113 ATICHGPTAMGIQESGKVGATEGQKKNRADL--LIYWGTNPLESMPRQMSRYAVFPRGYW 170
Query: 182 LNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEFVRSR 241
R +I +D R+T T +D + + PG+D L +ALM ++ +
Sbjct: 171 TKRGRFDRTVITVDPRKTPTAEASDLHVQLKPGSDYELISALMTLLHGK----------- 219
Query: 242 TVGFSEVKMAVKKYTPE-YAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVSGVE 300
TP E++TG+ ++ E+ GAI G+GL+ +
Sbjct: 220 --------------TPHPSVEEITGVPIPVMEEMLDMMKNCTFGAISVGLGLSSSIGKHR 265
Query: 301 NVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG----AAYMGALS---EFLPGY 346
N ++ L K L +RG NV G AAYM S +F+ G+
Sbjct: 266 NAEIAMNFVKELNNF-SKFTLGALRGHCNVAGFNQVAAYMYGYSFGLDFMRGH 317
>pir||A69075 formylmethanofuran dehydrogenase (EC 1.2.99.5) (tungsten) chain B -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622681|gb|AAB86033.1| (AE000916) tungsten
formylmethanofuran dehydrogenase, subunit B
[Methanobacterium thermoautotrophicum]
Length = 437
Score = 81.5 bits (198), Expect = 3e-14
Identities = 94/345 (27%), Positives = 146/345 (42%), Gaps = 60/345 (17%)
Query: 1 MFIGDRVIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLR 60
+ I + V VVCP+CG C+ +I KV+ G G + + +FV ++ +R
Sbjct: 3 VIIMEYVKNVVCPFCGTLCDDII----CKVE---GNEIVGTINACRIGHSKFVHAEGAMR 55
Query: 61 Y--PLKKVGSDFVRIGWDDAIREIASKLREIKE--RYGPNAIAFIASSKVSNEENYLLQK 116
Y PL + +FV + +D+AI + A L E K YG S E + +
Sbjct: 56 YTKPLIRKNGEFVEVSYDEAIDKAAKILAESKRPLMYG--------WSCTECEAQAVGVE 107
Query: 117 IARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIW-GYNPAETHP 175
+A G IDN A +CH SV AL+ G + +++N ++++ G NP HP
Sbjct: 108 LAEEAGAV-IDNTASVCHGPSVLALQ---DVGYPICTFGEVKNRADVVVYLGCNPMHAHP 163
Query: 176 VVMDYILNAK-------RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVII 228
M + A+ R +IV+D R+T + +LAD L ++ D L +A+ + ++
Sbjct: 164 RHMSRNVFARGFFRERGRSDRTLIVVDPRKTDSAKLADIHLQLDFDHDYELLDAMRSCLL 223
Query: 229 S-EGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIM 287
E LYD +V G+ + I E A G +
Sbjct: 224 GHEILYD---------------------------EVAGVPREQIEEAVEVLKNAQFGILF 256
Query: 288 WGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG 332
+GMG+T N+ I M L K L PMRG NV G
Sbjct: 257 FGMGITHSRGKHRNIDTAIMMVQDLNDYA-KWTLIPMRGHYNVTG 300
>pir||A69223 formylmethanofuran dehydrogenase (EC 1.2.99.5) (molybdenum) chain B
- Methanobacterium thermoautotrophicum (strain Delta H)
>gi|1702947|emb|CAA66402.1| (X97820) formylmethanofuran
dehydrogenase [Methanobacterium thermoautotrophicum]
>gi|2622016|gb|AAB85417.1| (AE000867) molybdenum
formylmethanofuran dehydrogenase, subunit B
[Methanobacterium thermoautotrophicum]
Length = 436
Score = 80.8 bits (196), Expect = 5e-14
Identities = 85/335 (25%), Positives = 134/335 (39%), Gaps = 56/335 (16%)
Query: 10 VVCPYCGFGCN---LLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKV 66
V CP CG C+ +L D KT+K + C G + ++S R+ P K
Sbjct: 7 VTCPVCGGSCDDIEVLYDGKTIKTR---------NACRMGNAKFQEMVSSHRILRPQIKT 57
Query: 67 GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNI 126
S F WD+A+ A L E K S++S E ++ L +
Sbjct: 58 ESGFRSAEWDEALDAAAEILTESKRP------TLFMGSEMSTEAMAAGLELGEYLNAM-V 110
Query: 127 DNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMI-WGYNPAETHPVVMD------ 179
D+ A +CH ++ ++ AG +++N ++I WG N ++ P M
Sbjct: 111 DSNATICHGPTLMGIQE---AGQSAATAGEIKNRADVIIYWGTNVMDSMPRHMSRYSIFM 167
Query: 180 --YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
+ +K +I +D RET T + +D L + P +D L +AL+ VI +
Sbjct: 168 RGFFRERGKKDRTVISVDPRETATTKASDIHLQLKPNSDYELFSALLTVIRGNEPH---- 223
Query: 238 VRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVS 297
R++ E +TGI + I+EVA A GAI G+GL
Sbjct: 224 ---RSI-----------------ESITGISVETIKEVADIMLNAQFGAIYGGLGLASSEG 263
Query: 298 GVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG 332
NV V+ + L K + +RG NV G
Sbjct: 264 KHRNVEMVLKLVAALN-EHTKFTIGAIRGHCNVAG 297
>emb|CAA08788.1| (AJ009689) molybdenum formylmethanofuran dehydrogenase subunit fmdB
[Methanobacterium wolfei]
Length = 436
Score = 80.8 bits (196), Expect = 5e-14
Identities = 85/335 (25%), Positives = 134/335 (39%), Gaps = 56/335 (16%)
Query: 10 VVCPYCGFGCN---LLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRYPLKKV 66
V CP CG C+ +L D KT+K + C G + ++S R+ P K
Sbjct: 7 VTCPVCGGSCDDIKVLYDGKTIKTR---------NACRMGNAKFQEMVSSHRILRPQIKT 57
Query: 67 GSDFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIARLLGTNNI 126
S F WD+A+ A L E K S++S E ++ L +
Sbjct: 58 ESGFRSAEWDEALDAAAEILTESKRP------TLFMGSEMSTEAMAAGLELGEYLNAM-V 110
Query: 127 DNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMI-WGYNPAETHPVVMD------ 179
D+ A +CH ++ ++ AG +++N ++I WG N ++ P M
Sbjct: 111 DSNATICHGPTLMGIQE---AGQSAATAGEIKNRADVIIYWGTNVMDSMPRHMSRYSIFM 167
Query: 180 --YILNAKRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEGLYDKEF 237
+ +K +I +D RET T + +D L + P +D L +AL+ VI +
Sbjct: 168 RGFFRERGKKDRTVISVDPRETATTKASDIHLQLKPNSDYELFSALLTVIRGNEPH---- 223
Query: 238 VRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLTQHVS 297
R++ E +TGI + I+EVA A GAI G+GL
Sbjct: 224 ---RSI-----------------ESITGISVETIKEVADIMLNAQFGAIYGGLGLASSEG 263
Query: 298 GVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG 332
NV V+ + L K + +RG NV G
Sbjct: 264 KHRNVEMVLKLVAALN-EHTKFTIGAIRGHCNVAG 297
>emb|CAA08785.1| (AJ009688) tungsten formylmethanofuran dehydrogenase subunit fwdB
[Methanobacterium wolfei]
Length = 424
Score = 79.2 bits (192), Expect = 1e-13
Identities = 92/339 (27%), Positives = 141/339 (41%), Gaps = 60/339 (17%)
Query: 7 VIRVVCPYCGFGCNLLIDPKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKDRLRY--PLK 64
V VVCP+CG C+ +I KV+ G G + + +FV ++ +RY PL
Sbjct: 4 VKNVVCPFCGTLCDDII----CKVE---GNEIVGTINACRIGHSKFVHAEGAMRYKKPLI 56
Query: 65 KVGSDFVRIGWDDAIREIASKLREIKE--RYGPNAIAFIASSKVSNEENYLLQKIARLLG 122
+ +FV + +D+AI + A L E K YG S E + ++A G
Sbjct: 57 RKNGEFVEVSYDEAIDKAAKILAESKRPLMYG--------WSCTECEAQAVGVELAEEAG 108
Query: 123 TNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMI-WGYNPAETHPVVMDYI 181
IDN A +CH SV AL+ + +++N +++ WG NP HP M
Sbjct: 109 AV-IDNTASVCHGPSVLALQ---DVDYPICTFGEVKNRADVVVYWGCNPMHAHPRHMSRN 164
Query: 182 LNAK-------RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIIS-EGLY 233
+ A+ R +IV+D R+T + +LAD L ++ D L +A+ ++ E LY
Sbjct: 165 VFARGFFRERGRSDRTLIVVDPRKTDSAKLADIHLQLDFDRDYELLDAMRACLLGHEILY 224
Query: 234 DKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMGLT 293
D +V G+ + I E A G + +GMG+T
Sbjct: 225 D---------------------------EVAGVPREQIEEAVEVLKNAQFGILFFGMGIT 257
Query: 294 QHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQNNVQG 332
N+ I M L + L PMRG NV G
Sbjct: 258 HSRGKHRNIDTAIMMVQDLNDY-PRWTLIPMRGHYNVTG 295
>sp|P54934|BISC_RHOSH BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) (BSO REDUCTASE)
>gi|2126474|pir||S65669 biotin sulfoxide reductase (EC
1.8.4.-) - Rhodobacter sphaeroides
>gi|953224|gb|AAA74739.1| (U08189) biotin sulfoxide
reductase [Rhodobacter sphaeroides]
Length = 744
Score = 78.8 bits (191), Expect = 2e-13
Identities = 98/448 (21%), Positives = 191/448 (41%), Gaps = 52/448 (11%)
Query: 70 FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSN-----EENYLLQKIARLLG-- 122
F+ + WD A+ +A ++R + +G NA F S ++ + LL+++ L+G
Sbjct: 55 FLPVSWDAALDLVAGEIRRVSADHG-NAAIFAGSYGWTSCGRFHHASTLLKRMLNLVGGF 113
Query: 123 TNNIDNCARLCHEASV-HALKMTLGAGVQTNPYSDL-ENFKAIMIWGYNPAETHPV---- 176
T ++D + + H L G Q N + E+ + ++++G T
Sbjct: 114 TGHVDTYSIAAGPVILRHTLGDDRACGGQANTLDSIAEHSQTLVVFGAMSPRTAQSEAGG 173
Query: 177 -----VMDYILNAKRKGAKIIVID-VRETTTMRLADYKLMINPGTDITLANALMNVIISE 230
+ Y+ +G ++I++ +++ +A I P TD L L I+
Sbjct: 174 IGAHHLETYLRRIVERGVRVILVSPLKDDLPDWVAAEWWPIRPNTDTALMLGLAGEIVRS 233
Query: 231 GLYDKEFVRSRTVGFSEVKMAV-------KKYTPEYAEKVTGIEAKLIREVAREFAKAGS 283
G D +F+ T G SE+ +A + E+A +TG+ A+ IR +A + + S
Sbjct: 234 GRQDSDFLARCTSG-SELYLAYLRGEGDGRPKDAEWASTITGLPAEAIRALAGDLPRTRS 292
Query: 284 G-AIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGG--------LYPMRGQNNVQGAA 334
+ W + H G + A + +A ++G +G GG L + + +
Sbjct: 293 MLTVSWSLQRAHH--GEQPFWAALGLAAVIGQIGRPGGGVGYGYGSLGGVGAPFTIGKSP 350
Query: 335 YMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMG 394
M LS+ + ++P+ R++ + + G Y E D +++ +Y G
Sbjct: 351 AMSQLSKPINSFIPVA------RISDM-----LLNPGGPYSYEGEDRRYP-DIRLVYWSG 398
Query: 395 ENPAVSEANVLKVRKALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRI 454
NP ++ ++ +A + E ++VQD T TA+ A +LPA+ E+ N
Sbjct: 399 GNPFHHHQDLNRLSEAWTRPETIIVQDPMFTATAKRADIVLPASTSIERNDLAGNKRSDF 458
Query: 455 QWSF-KVCDPPGEAKPDWEILSLLGKEL 481
+ + P GEA+ D++I + L +L
Sbjct: 459 ILAMGQAIAPLGEARSDFDIFNALSGKL 486
>gb|AAK41791.1| Molybdopterin oxidoreductase, molybdopterin binding subunit
[Sulfolobus solfataricus]
Length = 1050
Score = 71.0 bits (171), Expect = 4e-11
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 25/252 (9%)
Query: 11 VCPYCGFGCNLLIDPKTL----KVKPYKGEP----NRGKLCPKGLHALEFVLSKDRLRYP 62
+C +C C++L++ + + + G P N GK+CP+G + + DRL+ P
Sbjct: 69 ICAFCSSTCDILVETEYINGYMRALEIDGNPLSPLNEGKVCPRGRAGIFRTYNVDRLKTP 128
Query: 63 LKKVGS----DFVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYLLQKIA 118
L + G F W++ I I ++++ P F+ NY I
Sbjct: 129 LIRTGPKGTWSFREATWEETINYIMQNIKQLN----PQPYEFLLIGGGIPCANYKPYFIP 184
Query: 119 RLLGTNNIDNCARLCHEASVHALKMTLGAGV------QTNPYSDLENFKAIMIWGYNPAE 172
LGT I N + + + ++ +G + T+ D+ I+ WG +
Sbjct: 185 FTLGTQ-IPNINGTPMQTCLFSDQVPIGFVIGGFDLHATDMMDDMTYSSLIVAWGTSGIP 243
Query: 173 THPVVMDYILNAK--RKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISE 230
V I AK GA +I ID R + A+ + PG+D+ +A A++N +I
Sbjct: 244 AGIFVNRAIRYAKGIENGAYVIAIDPRMSEAASKANLWIPAKPGSDLYIAMAIINYLIQN 303
Query: 231 GLYDKEFVRSRT 242
YD EFVR T
Sbjct: 304 NYYDDEFVRYYT 315
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246813873
Number of Sequences: 2977
Number of extensions: 10576613
Number of successful extensions: 33589
Number of sequences better than 1.0e-10: 154
Number of HSP's better than 0.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 32671
Number of HSP's gapped (non-prelim): 299
length of query: 665
length of database: 189,106,746
effective HSP length: 57
effective length of query: 608
effective length of database: 154,992,987
effective search space: 94235736096
effective search space used: 94235736096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)