BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2445 (lamB-like) DE:LACTAM UTILIZATION RELATED PROTEIN
(255 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75074 lactam utilization related protein PAB2445 - Pyrococ... 515 e-145
pir||E71090 probable lactam utilization protein - Pyrococcus hor... 490 e-138
pir||C81301 hypothetical protein Cj1541 [imported] - Campylobact... 303 1e-81
dbj|BAB05540.1| (AP001513) lactam utilization protein [Bacillus ... 275 5e-73
gb|AAC46263.1| (AF006000) unknown [Bordetella pertussis] 259 2e-68
pir||G83382 conserved hypothetical protein PA2112 [imported] - P... 227 1e-58
emb|CAB56671.1| (AL121596) hypothetical protein SCF51A.19 [Strep... 224 6e-58
sp|P42963|YCSF_BACSU HYPOTHETICAL 22.7 KDA PROTEIN IN SIPU-KIPI ... 224 1e-57
pir||H82419 conserved hypothetical protein VCA0776 [imported] - ... 224 1e-57
pir||C83083 conserved hypothetical protein PA4511 [imported] - P... 224 1e-57
sp|P45347|YBGL_HAEIN HYPOTHETICAL PROTEIN HI1729 >gi|1074956|pir... 221 5e-57
pir||F81223 conserved hypothetical protein NMB0228, NMA0030 [imp... 220 9e-57
sp|P75746|YBGL_ECOLI PROTEIN YBGL >gi|7430099|pir||H64806 ybgL p... 220 2e-56
pir||B75582 conserved hypothetical protein - Deinococcus radiodu... 216 2e-55
pir||G83584 conserved hypothetical protein PA0492 [imported] - P... 213 2e-54
pir||I39894 lactam utilization protein - Bacillus subtilis (frag... 153 1e-36
sp|P38096|LAMB_EMENI LACTAM UTILIZATION PROTEIN LAMB >gi|482982|... 151 9e-36
>pir||H75074 lactam utilization related protein PAB2445 - Pyrococcus abyssi
(strain Orsay) >gi|5458413|emb|CAB49901.1| (AJ248286)
LACTAM UTILIZATION RELATED PROTEIN [Pyrococcus abyssi]
Length = 255
Score = 515 bits (1313), Expect = e-145
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MRVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG 60
MRVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG
Sbjct: 1 MRVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG 60
Query: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK 120
AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK
Sbjct: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK 120
Query: 121 EEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRG 180
EEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRG
Sbjct: 121 EEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRG 180
Query: 181 KPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKIL 240
KPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKIL
Sbjct: 181 KPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKIL 240
Query: 241 EEEGVKVVPLKDFIG 255
EEEGVKVVPLKDFIG
Sbjct: 241 EEEGVKVVPLKDFIG 255
>pir||E71090 probable lactam utilization protein - Pyrococcus horikoshii
>gi|3257400|dbj|BAA30083.1| (AP000004) 255aa long
hypothetical lactam utilization protein [Pyrococcus
horikoshii]
Length = 255
Score = 490 bits (1248), Expect = e-138
Identities = 233/254 (91%), Positives = 254/254 (99%)
Query: 1 MRVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG 60
MRVDLNSDLGESFGRYKLGLDEEVM+YITSAN+ACGWHAGDP+VMR+TV+LAKEN+VQVG
Sbjct: 1 MRVDLNSDLGESFGRYKLGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVG 60
Query: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK 120
AHPGYPDLMGFGRRYMKLTPEEARNYILYQ+GALYAFAKAEG+ELQHVKPHGALYNAMVK
Sbjct: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVK 120
Query: 121 EEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRG 180
EE+LARAVIEGILDFDK+LILVTLSNSRVA+IAEEMGLKVAHEVFADRAYNPDGTLVPRG
Sbjct: 121 EEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVPRG 180
Query: 181 KPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKIL 240
+PGAVIEDKEEIAERVISMVKDGG+RAINGEWV+L+VDTICVHGDNPKA+EITS+IRK+L
Sbjct: 181 RPGAVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVL 240
Query: 241 EEEGVKVVPLKDFI 254
EEEGVK+VP+K+FI
Sbjct: 241 EEEGVKIVPMKEFI 254
>pir||C81301 hypothetical protein Cj1541 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968960|emb|CAB73957.1|
(AL139078) hypothetical protein Cj1541 [Campylobacter
jejuni]
Length = 255
Score = 303 bits (768), Expect = 1e-81
Identities = 140/253 (55%), Positives = 196/253 (77%)
Query: 2 RVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGA 61
+VDLNSDLGESFG YK+G+DEE++++++S N+ACG+HAGDP VM T+ LAK+N V +GA
Sbjct: 3 KVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPCVMDETLNLAKQNGVCIGA 62
Query: 62 HPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKE 121
HP YPDL+GFGRR M+++ EEA+NY LYQ+GAL+ FAKA+G+++QH K HGALYN +
Sbjct: 63 HPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAKGMKIQHFKAHGALYNMAAID 122
Query: 122 EELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGK 181
E LA A+ E + FD+N+I + LSNS + E A++ GL+ A+EVFADRAYN DGTLV R
Sbjct: 123 ENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLRYANEVFADRAYNDDGTLVSRKL 182
Query: 182 PGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILE 241
GA+I D+ +RVI M+K+ V +ING+ ++L+ D+ICVHGDN KALE I++ L+
Sbjct: 183 EGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKADSICVHGDNAKALEFVKKIKENLK 242
Query: 242 EEGVKVVPLKDFI 254
+E +++ L++FI
Sbjct: 243 KEQIQICALENFI 255
>dbj|BAB05540.1| (AP001513) lactam utilization protein [Bacillus halodurans]
Length = 257
Score = 275 bits (695), Expect = 5e-73
Identities = 130/253 (51%), Positives = 175/253 (68%)
Query: 2 RVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGA 61
RVDLNSDLGESFG Y +G D+ V+ ++TSANIACG+HAGD VM RTVKLA + + +GA
Sbjct: 3 RVDLNSDLGESFGAYTIGQDDRVLEHVTSANIACGYHAGDHNVMARTVKLAADKGMGIGA 62
Query: 62 HPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKE 121
HPG+PDL+GFGRR ++ ++ N+I+YQ+ AL F + V +QHVKPHGALYN K+
Sbjct: 63 HPGFPDLLGFGRRNIQTDHKDIYNFIVYQVAALNGFCQLHRVRMQHVKPHGALYNMAAKD 122
Query: 122 EELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGK 181
+A A+ E I D D +LIL LS S + + +++GL VA+EVFADR Y PDGTL PR +
Sbjct: 123 RVIAEAIAEAIYDIDPSLILFGLSGSELIKAGKKLGLTVANEVFADRTYQPDGTLTPRSE 182
Query: 182 PGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILE 241
A+I++ E E+VI MVK+ V A++G + + DTICVHGD+P AL + L+
Sbjct: 183 ANALIKESERATEQVIQMVKESKVIAVDGSHIPIEADTICVHGDSPTALSFIERLHAQLQ 242
Query: 242 EEGVKVVPLKDFI 254
EGV V + DF+
Sbjct: 243 VEGVTVTKVSDFL 255
>gb|AAC46263.1| (AF006000) unknown [Bordetella pertussis]
Length = 252
Score = 259 bits (655), Expect = 2e-68
Identities = 119/245 (48%), Positives = 168/245 (68%)
Query: 3 VDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGAH 62
+DLN D+GES+G +++G DE V++++TSANIACG+H GDP MR+TV A + V +GAH
Sbjct: 5 IDLNCDMGESYGAWRMGNDEAVLQFVTSANIACGFHGGDPSTMRQTVAAALAHGVALGAH 64
Query: 63 PGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKEE 122
P PDL GFGRR M++TP+EA + ++YQ+GAL A ++G L HVK HGALYN K+
Sbjct: 65 PSLPDLAGFGRRAMQITPQEAYDLVVYQVGALAGVAASQGARLHHVKAHGALYNMAAKDA 124
Query: 123 ELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGKP 182
LARA+ + + D D +L+L L+ S + + A +GL+ A EVFADR Y DG L PR +P
Sbjct: 125 ALARAICQAVRDVDSDLVLYGLAGSALIDAARAIGLRAAQEVFADRTYQADGQLTPRSQP 184
Query: 183 GAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILEE 242
A+I D ++ +V+ MV+DG VR +G+ V L+ DT+C+HGD P AL IR LE
Sbjct: 185 DAMITDLDQAIAQVLGMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVFARGIRLALER 244
Query: 243 EGVKV 247
+G+ +
Sbjct: 245 DGIAI 249
>pir||G83382 conserved hypothetical protein PA2112 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948126|gb|AAG05500.1|AE004638_10 (AE004638)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 247
Score = 227 bits (572), Expect = 1e-58
Identities = 111/240 (46%), Positives = 157/240 (65%), Gaps = 3/240 (1%)
Query: 5 LNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGAHPG 64
LN D+GESFG +++GLD EVM I ANIACG+HAGDP MRRTV LA E+ V++GAHPG
Sbjct: 6 LNCDIGESFGAWRMGLDAEVMPLIDCANIACGFHAGDPGTMRRTVALAVEHGVRIGAHPG 65
Query: 65 YPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKEEEL 124
YPDL+GFGRR + + +E + +LYQIGAL +A+G +++VKPHGALY M+++ +
Sbjct: 66 YPDLVGFGRRSLACSAQEVEDLLLYQIGALDGLCRAQGTRVRYVKPHGALYQDMMRDPAI 125
Query: 125 ARAVIEGILDFDKNLILVTLS---NSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGK 181
AV+ + +D+ L L+ +S N+ + E G+++ E FADRAY+ G LV R +
Sbjct: 126 LAAVLRALAAYDRTLPLMLMSTRDNTAARALGEAHGIELWFEAFADRAYDGAGYLVSRSQ 185
Query: 182 PGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILE 241
PGAV D E + + + + + +RA +G + L T+CVHGDNP +L IR LE
Sbjct: 186 PGAVHHDAETVLAQALLLARGAALRASDGSALALEAQTLCVHGDNPASLAAVRRIRDALE 245
>emb|CAB56671.1| (AL121596) hypothetical protein SCF51A.19 [Streptomyces coelicolor
A3(2)]
Length = 250
Score = 224 bits (566), Expect = 6e-58
Identities = 112/245 (45%), Positives = 155/245 (62%)
Query: 3 VDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGAH 62
+DLN+DLGE FGR+ L D+ ++ +TSAN+ACG+HAGDP VMRR LA E V++GA
Sbjct: 2 IDLNADLGEGFGRWTLTDDDALLSVVTSANVACGFHAGDPSVMRRVCDLAAERGVRIGAQ 61
Query: 63 PGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKEE 122
Y DL GFGRR M + +E + YQIGAL FA+A G + +VKPHGALYN V +E
Sbjct: 62 VSYRDLAGFGRRAMDVPSDELAAEVAYQIGALRVFAEAAGAPVAYVKPHGALYNRTVHDE 121
Query: 123 ELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGKP 182
ARAV+ G+ L ++ L SR+ A E GL E FADRAY +G+LVPR +
Sbjct: 122 GQARAVVAGVRLAGGALPVLGLPGSRLLTAAAEAGLTGVPEAFADRAYTAEGSLVPRSEA 181
Query: 183 GAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILEE 242
G+V+ D++ + R ++ +G V A++G V + ++CVHGD P A I + +R+ LE
Sbjct: 182 GSVVTDEDAVVRRALAFAVEGSVEAVDGTAVAVAARSLCVHGDTPNAARIAARVREALET 241
Query: 243 EGVKV 247
GV +
Sbjct: 242 AGVGI 246
>sp|P42963|YCSF_BACSU HYPOTHETICAL 22.7 KDA PROTEIN IN SIPU-KIPI INTERGENIC REGION
>gi|7430097|pir||D69765 lactam utilization protein ycsF
- Bacillus subtilis >gi|1805474|dbj|BAA09036.1| (D50453)
lactam utilization protein LamB homologue of H.
influenza [Bacillus subtilis]
>gi|2632706|emb|CAB12213.1| (Z99106) similar to lactam
utilization protein [Bacillus subtilis]
Length = 211
Score = 224 bits (564), Expect = 1e-57
Identities = 102/177 (57%), Positives = 135/177 (75%)
Query: 2 RVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGA 61
++DLN DLGESFG YK+GLD++++ Y+TSANIACG+HAGDP VMR+TV LA E V++GA
Sbjct: 3 QIDLNCDLGESFGAYKIGLDQDILEYVTSANIACGFHAGDPSVMRKTVALAAERGVKMGA 62
Query: 62 HPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKE 121
HPG PDL+GFGRR M ++PEEA + ++YQIGAL F KAEG+ +QHVKPHGALYN +
Sbjct: 63 HPGLPDLLGFGRRNMAISPEEAYDLVVYQIGALSGFLKAEGLHMQHVKPHGALYNMAAVD 122
Query: 122 EELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVP 178
++L+ A+ + + D LIL L+ S + + E +GL+ A+EVFADR Y DGTL P
Sbjct: 123 QKLSDAIAKAVYKVDPGLILFGLAESELVKAGERIGLQTANEVFADRTYQSDGTLTP 179
>pir||H82419 conserved hypothetical protein VCA0776 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658199|gb|AAF96674.1|
(AE004405) conserved hypothetical protein [Vibrio
cholerae]
Length = 246
Score = 224 bits (564), Expect = 1e-57
Identities = 108/241 (44%), Positives = 156/241 (63%), Gaps = 1/241 (0%)
Query: 3 VDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGAH 62
+ LN D+GESFG + +G DEEVM +I ANIACG+HA DP VM RT+ LA E+ V +GAH
Sbjct: 6 IQLNCDMGESFGVWTMGADEEVMPWIDMANIACGFHASDPHVMSRTIDLALEHEVMIGAH 65
Query: 63 PGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKEE 122
P YPDL GFGRR + + +E ILYQ+GAL A +++ +L +VKPHGALYN M+ +
Sbjct: 66 PSYPDLQGFGRRSLAMNEQEVSEIILYQVGALKALCESKNGQLSYVKPHGALYNDMMSDP 125
Query: 123 ELARAVIEGILDFDKNL-ILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGK 181
+ RAV++ + F+ L +L + +N +IA+ + + E FADR Y +G L PR +
Sbjct: 126 SIFRAVVDAVSCFNLPLMVLASANNQDYLDIADRFDVPLLFEAFADRTYLANGKLTPRSQ 185
Query: 182 PGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILE 241
P AV+ +E I +V + + G V + +G + + DT+CVHGDNP A+ + + IR L+
Sbjct: 186 PNAVLSSEEAILNQVRQIARYGKVTSSDGFVIPIEADTLCVHGDNPNAVSLIARIRAALD 245
Query: 242 E 242
E
Sbjct: 246 E 246
>pir||C83083 conserved hypothetical protein PA4511 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950751|gb|AAG07899.1|AE004864_11 (AE004864)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 251
Score = 224 bits (564), Expect = 1e-57
Identities = 110/243 (45%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 2 RVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGA 61
R+ LN D+GESFG +++G D M + AN+ACG+HAGDP+ MRR V+LA + V +GA
Sbjct: 7 RILLNCDMGESFGAWRMGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGA 66
Query: 62 HPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKE 121
HP YPDL GFGRR + + EE +LYQIGAL AF ++ G ++ +VKPHGALYN +V +
Sbjct: 67 HPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGD 126
Query: 122 EELARAVIEGILDFDKNLILVTLS---NSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVP 178
+EL RAV++ + K L L+ L+ N R E+A+E + + E FADRAY PDG L P
Sbjct: 127 DELLRAVLDACAAYRKGLPLMVLALADNGRELELADEADVPLLFEAFADRAYLPDGRLAP 186
Query: 179 RGKPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRK 238
R GAV D + I E+ +++ + +G + L D++CVHGDNP++L + +R
Sbjct: 187 RRLGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSLCVHGDNPQSLAVLRRLRA 246
Query: 239 ILE 241
L+
Sbjct: 247 ALD 249
>sp|P45347|YBGL_HAEIN HYPOTHETICAL PROTEIN HI1729 >gi|1074956|pir||H64138 lactam
utilization protein homolog - Haemophilus influenzae
(strain Rd KW20) >gi|1574585|gb|AAC23375.1| (U32845)
conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 257
Score = 221 bits (558), Expect = 5e-57
Identities = 108/246 (43%), Positives = 159/246 (63%), Gaps = 5/246 (2%)
Query: 2 RVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGA 61
++DLN+D+ E F DE +++ ++SAN+ACG HAG M+ VK AKEN V++GA
Sbjct: 15 KIDLNADIAEGFP-----FDESLLQLLSSANVACGLHAGGAKEMQSAVKFAKENKVRIGA 69
Query: 62 HPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKE 121
HP +PD FGR M L+ +E ++ YQ+GAL A EG + +VKPHGALYN K+
Sbjct: 70 HPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKD 129
Query: 122 EELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGK 181
E++AR + + + FD NL L+ L+ S + IAEE L+ EVFADR Y PDG+LVPR +
Sbjct: 130 EKIARLIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQ 189
Query: 182 PGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILE 241
P A++E +E ++V+ MV G V AI+G V ++ ++IC+HGDN +L+ I + LE
Sbjct: 190 PNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELE 249
Query: 242 EEGVKV 247
+ +K+
Sbjct: 250 KNHIKI 255
>pir||F81223 conserved hypothetical protein NMB0228, NMA0030 [imported] -
Neisseria meningitidis (group B strain MD58, group A
strain Z2491) >gi|6900439|emb|CAB72038.1| (AJ391262)
hypothetical protein (conserved) [Neisseria
meningitidis] >gi|7225451|gb|AAF40684.1| (AE002380)
conserved hypothetical protein [Neisseria meningitidis
MC58] >gi|7378807|emb|CAB83349.1| (AL162752)
hypothetical protein NMA0030 [Neisseria meningitidis
Z2491]
Length = 245
Score = 220 bits (556), Expect = 9e-57
Identities = 113/246 (45%), Positives = 154/246 (61%), Gaps = 5/246 (2%)
Query: 2 RVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGA 61
+VDLN+DL E G DE +++ ITSANIAC HAG +R + A++N V++GA
Sbjct: 3 QVDLNADLAEGCGS-----DEALLQLITSANIACAQHAGSIADIRAALAYAQQNGVRIGA 57
Query: 62 HPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKE 121
HPGYPD FGR M L+ + R + YQ+GAL A + +G+E+ +VKPHGA+YN K
Sbjct: 58 HPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMAYVKPHGAMYNQAAKN 117
Query: 122 EELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRGK 181
LA V + DFD L L+ LS S + E + GL V EVFADR Y PDGTLVPR +
Sbjct: 118 RALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEVFADRRYMPDGTLVPRSR 177
Query: 182 PGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKILE 241
P A ++ EE +V+ MV+DG V+A++G V ++ D+IC+HGD P A+ IR+ L
Sbjct: 178 PDAQVDSDEEAIAQVLQMVRDGQVKAVDGSLVAVQADSICLHGDGPHAVVFAEKIRQELL 237
Query: 242 EEGVKV 247
G+KV
Sbjct: 238 AAGIKV 243
>sp|P75746|YBGL_ECOLI PROTEIN YBGL >gi|7430099|pir||H64806 ybgL protein - Escherichia
coli >gi|1786931|gb|AAC73807.1| (AE000174) putative
lactam utilization protein [Escherichia coli K12]
>gi|4062309|dbj|BAA35377.1| (D90710) Lactam utilization
protein (lamB) homolog [Escherichia coli]
Length = 244
Score = 220 bits (554), Expect = 2e-56
Identities = 109/247 (44%), Positives = 152/247 (61%), Gaps = 5/247 (2%)
Query: 1 MRVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG 60
M++DLN+DLGE D E++ ++SANIACG+HAGD +M+ V+ A +N V +G
Sbjct: 1 MKIDLNADLGEGCAS-----DAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIG 55
Query: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK 120
AHP +PD FGR M+L PE LYQIGAL A+A+G ++HVKPHG LYN K
Sbjct: 56 AHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAK 115
Query: 121 EEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRG 180
E +LA A+ + D LILV L+ S + ++ GL EVFADR Y DG+LVPR
Sbjct: 116 EAQLADAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRS 175
Query: 181 KPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKIL 240
+ GA+IE++E+ + + MV+ G V++I GEW + T+C+HGD AL +R
Sbjct: 176 QSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAF 235
Query: 241 EEEGVKV 247
E+G+ V
Sbjct: 236 AEKGIVV 242
>pir||B75582 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460773|gb|AAF12478.1|AE001863_103 (AE001863)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 300
Score = 216 bits (544), Expect = 2e-55
Identities = 113/255 (44%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 1 MRVDLNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG 60
+ DLN+D GESFG + LG D + +TS N+A G+HAGDP+ + V+LA+++ + +G
Sbjct: 47 LTTDLNADAGESFGHWPLGDDARLFPLLTSVNLALGFHAGDPVTLHSAVRLARQHGLGIG 106
Query: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK 120
AHPGYPDL+GFGRR + LTP E + LYQIGAL AF EG LQHVK HGALY + +
Sbjct: 107 AHPGYPDLVGFGRRELALTPLEIQAATLYQIGALQAFLTVEGGTLQHVKAHGALYMRIHE 166
Query: 121 EEELARAVIEGILDFDKNLILVTL---SNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLV 177
+ A + L+ L + S +A A GL+V E F +RAY DG L
Sbjct: 167 DRAAGEAFCHAVQQLVPQAYLIVLAGAAGSDLALTAAAHGLRVRREAFPERAYTGDGRLA 226
Query: 178 PRGKPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIR 237
R PG+ I D E A R + M + G V+ + GE + L +DT+C+HGDNP+A+ I IR
Sbjct: 227 SRQLPGSSIHDPAEAARRAVGMAQ-GWVQTLGGERLALEMDTLCIHGDNPQAVAIAGAIR 285
Query: 238 KILEEEGVKVVPLKD 252
L E GV + L D
Sbjct: 286 AALAENGVTLARLHD 300
>pir||G83584 conserved hypothetical protein PA0492 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946355|gb|AAG03881.1|AE004486_10 (AE004486)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 252
Score = 213 bits (537), Expect = 2e-54
Identities = 105/247 (42%), Positives = 161/247 (64%), Gaps = 4/247 (1%)
Query: 3 VDLNSDLGESFGRYKLG--LDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVG 60
VDLNSD+GE FG + +G +D +M I+SANIA G+HAGDP MRRTV++A E+ V +G
Sbjct: 4 VDLNSDMGEGFGPWTIGDGVDAAIMPLISSANIATGFHAGDPSSMRRTVEMAAEHGVAIG 63
Query: 61 AHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVK 120
AHPG+ DL+GFGRR++ E N +LYQ+GAL FA+ +G+ LQHVKPHGALY + +
Sbjct: 64 AHPGFRDLVGFGRRHIAAPAIELVNDMLYQLGALREFARLQGLSLQHVKPHGALYMHLAR 123
Query: 121 EEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEVFADRAYNPDGTLVPRG 180
+E AR +E + + L+L + S I E+G + E +ADR Y+ G++V
Sbjct: 124 DEVAARLFVETLQRLEPELLLYCMPGSATWRIGRELGQPLVREFYADRDYDRSGSIVFTR 183
Query: 181 KPGAVIEDKEEIAERVISMVKDGGVRAINGEWVELRVDTICVHGDNPKALEITSHIRKIL 240
+ A+ D +++A++V+ ++G VR + GE +++ D++C+H D P ALE+ + R L
Sbjct: 184 RVAAL--DPQQVADKVLRACREGKVRTVEGEDLDIAFDSVCIHSDTPGALELVASTRARL 241
Query: 241 EEEGVKV 247
E G+++
Sbjct: 242 EGAGIRI 248
>pir||I39894 lactam utilization protein - Bacillus subtilis (fragment)
>gi|707083|dbj|BAA07357.1| (D38161) lactam utilization
protein [Bacillus subtilis] >gi|1588445|prf||2208409H
lactam utilization protein [Bacillus subtilis]
Length = 166
Score = 153 bits (384), Expect = 1e-36
Identities = 72/134 (53%), Positives = 96/134 (70%)
Query: 45 MRRTVKLAKENNVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVE 104
MR+TV LA E V++GAHPG PDL+GFGRR M ++PEEA + ++YQIGAL F KAEG+
Sbjct: 1 MRKTVALAAERGVKMGAHPGLPDLLGFGRRNMAISPEEAYDLVVYQIGALSGFLKAEGLH 60
Query: 105 LQHVKPHGALYNAMVKEEELARAVIEGILDFDKNLILVTLSNSRVAEIAEEMGLKVAHEV 164
+QHVKPHGALYN +++L+ A+ + + D LIL L+ S + + E +GL+ A+EV
Sbjct: 61 MQHVKPHGALYNMAAVDQKLSDAIAKAVYKVDPGLILFGLAESELVKAGERIGLQTANEV 120
Query: 165 FADRAYNPDGTLVP 178
FADR Y DGTL P
Sbjct: 121 FADRTYQSDGTLTP 134
>sp|P38096|LAMB_EMENI LACTAM UTILIZATION PROTEIN LAMB >gi|482982|pir||B42064 lactam
utilization protein lamB - Emericella nidulans
>gi|168060|gb|AAA33313.1| (M77283) lamB [Aspergillus
nidulans]
Length = 262
Score = 151 bits (377), Expect = 9e-36
Identities = 69/128 (53%), Positives = 91/128 (70%)
Query: 5 LNSDLGESFGRYKLGLDEEVMRYITSANIACGWHAGDPIVMRRTVKLAKENNVQVGAHPG 64
+N D+GE++G + G D E++ I ANIACG+HAGDP++M TV+ K +N+ VGAHPG
Sbjct: 10 INCDMGEAYGNWTCGPDLELLPLIDIANIACGFHAGDPLIMMETVRNCKAHNILVGAHPG 69
Query: 65 YPDLMGFGRRYMKLTPEEARNYILYQIGALYAFAKAEGVELQHVKPHGALYNAMVKEEEL 124
PD+ GFGRR MKL+PEE +YQ+GAL F EGV L HVKPHG LY M ++ E+
Sbjct: 70 LPDIQGFGRREMKLSPEELTAITIYQVGALQGFLDREGVRLNHVKPHGVLYGMMCRDYEV 129
Query: 125 ARAVIEGI 132
A+AV+ GI
Sbjct: 130 AKAVMLGI 137
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97426450
Number of Sequences: 2977
Number of extensions: 4064282
Number of successful extensions: 9674
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9647
Number of HSP's gapped (non-prelim): 17
length of query: 255
length of database: 189,106,746
effective HSP length: 55
effective length of query: 200
effective length of database: 156,189,961
effective search space: 31237992200
effective search space used: 31237992200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)