BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2446 (PAB2446) DE:Hypothetical protein
(727 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75122 hypothetical protein PAB2446 - Pyrococcus abyssi (st... 1434 0.0
pir||B71009 hypothetical protein PH1368 - Pyrococcus horikoshii ... 800 0.0
gi|11498738 A. fulgidus predicted coding region AF1138 [Archaeog... 206 7e-52
dbj|BAB06934.1| (AP001518) unknown conserved protein in others [... 88 3e-16
>pir||D75122 hypothetical protein PAB2446 - Pyrococcus abyssi (strain Orsay)
>gi|5458204|emb|CAB49693.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 727
Score = 1434 bits (3671), Expect = 0.0
Identities = 727/727 (100%), Positives = 727/727 (100%)
Query: 1 MKMKITLLAFVLLAMLTTPILAKERTITVFEGKILPGEKLIVGNYTVEVAFDTSKNPYII 60
MKMKITLLAFVLLAMLTTPILAKERTITVFEGKILPGEKLIVGNYTVEVAFDTSKNPYII
Sbjct: 1 MKMKITLLAFVLLAMLTTPILAKERTITVFEGKILPGEKLIVGNYTVEVAFDTSKNPYII 60
Query: 61 VWRGDRKVAINRAVFGSRVEINNLTLVIGGYDEKGLTVVVSWKSEGRSYSLRVGRYIQGF 120
VWRGDRKVAINRAVFGSRVEINNLTLVIGGYDEKGLTVVVSWKSEGRSYSLRVGRYIQGF
Sbjct: 61 VWRGDRKVAINRAVFGSRVEINNLTLVIGGYDEKGLTVVVSWKSEGRSYSLRVGRYIQGF 120
Query: 121 KVVNISNSSITLGKDSSTFDIPKGVLTKLENFAFEFNGTTLTVYELPRVTLEKKIEEKSE 180
KVVNISNSSITLGKDSSTFDIPKGVLTKLENFAFEFNGTTLTVYELPRVTLEKKIEEKSE
Sbjct: 121 KVVNISNSSITLGKDSSTFDIPKGVLTKLENFAFEFNGTTLTVYELPRVTLEKKIEEKSE 180
Query: 181 IIVSYPFEEARIELGKTITVPIVVFNNGTQNVTLELSAESSKGIEVKFLYQGIEVKTIKL 240
IIVSYPFEEARIELGKTITVPIVVFNNGTQNVTLELSAESSKGIEVKFLYQGIEVKTIKL
Sbjct: 181 IIVSYPFEEARIELGKTITVPIVVFNNGTQNVTLELSAESSKGIEVKFLYQGIEVKTIKL 240
Query: 241 RGKETTSLQLLITPKDIKAGKYDVKFSIGNKTYKIFIDVKGKEPLEIITPIISQDSEAGT 300
RGKETTSLQLLITPKDIKAGKYDVKFSIGNKTYKIFIDVKGKEPLEIITPIISQDSEAGT
Sbjct: 241 RGKETTSLQLLITPKDIKAGKYDVKFSIGNKTYKIFIDVKGKEPLEIITPIISQDSEAGT 300
Query: 301 QVQFPITLLAHSDVIISIESKVPENWESYTLMDGVRIREAYLSSESQKVINLLVEVPRNA 360
QVQFPITLLAHSDVIISIESKVPENWESYTLMDGVRIREAYLSSESQKVINLLVEVPRNA
Sbjct: 301 QVQFPITLLAHSDVIISIESKVPENWESYTLMDGVRIREAYLSSESQKVINLLVEVPRNA 360
Query: 361 DLGYHQIELNIVGRDPNNLSVVFNKTLVFGVNVYKTYKGQNATLKLIVVDDLGNPVPRAL 420
DLGYHQIELNIVGRDPNNLSVVFNKTLVFGVNVYKTYKGQNATLKLIVVDDLGNPVPRAL
Sbjct: 361 DLGYHQIELNIVGRDPNNLSVVFNKTLVFGVNVYKTYKGQNATLKLIVVDDLGNPVPRAL 420
Query: 421 VKIGEQEYLTDSSGTLEVEIKPGEYNVNISKEGYEQKKESIKLGDGETKEIKITLTRKAY 480
VKIGEQEYLTDSSGTLEVEIKPGEYNVNISKEGYEQKKESIKLGDGETKEIKITLTRKAY
Sbjct: 421 VKIGEQEYLTDSSGTLEVEIKPGEYNVNISKEGYEQKKESIKLGDGETKEIKITLTRKAY 480
Query: 481 YFTVDTKSDIYPIFLGSPSSFSINIENLGKNDDEYKLELVGFPENWNYIFTESPESKLEI 540
YFTVDTKSDIYPIFLGSPSSFSINIENLGKNDDEYKLELVGFPENWNYIFTESPESKLEI
Sbjct: 481 YFTVDTKSDIYPIFLGSPSSFSINIENLGKNDDEYKLELVGFPENWNYIFTESPESKLEI 540
Query: 541 TRVKVKAGESRTVYLQVYPSLNAMPGDYNVTIIVKSSSGLTRKVPIKIKLTGFYNMDVRL 600
TRVKVKAGESRTVYLQVYPSLNAMPGDYNVTIIVKSSSGLTRKVPIKIKLTGFYNMDVRL
Sbjct: 541 TRVKVKAGESRTVYLQVYPSLNAMPGDYNVTIIVKSSSGLTRKVPIKIKLTGFYNMDVRL 600
Query: 601 MNYRLTITAGEEKGTSINIWNFGNAPLTNIKITVNGPQGWEIRVDKSLIPSLPPKGNVNV 660
MNYRLTITAGEEKGTSINIWNFGNAPLTNIKITVNGPQGWEIRVDKSLIPSLPPKGNVNV
Sbjct: 601 MNYRLTITAGEEKGTSINIWNFGNAPLTNIKITVNGPQGWEIRVDKSLIPSLPPKGNVNV 660
Query: 661 PITIKVPEGTTAGDYRIRISVKSDQAEWSDTLRVVVKQRSTSTYIGVLILVLAFGLVIFM 720
PITIKVPEGTTAGDYRIRISVKSDQAEWSDTLRVVVKQRSTSTYIGVLILVLAFGLVIFM
Sbjct: 661 PITIKVPEGTTAGDYRIRISVKSDQAEWSDTLRVVVKQRSTSTYIGVLILVLAFGLVIFM 720
Query: 721 MRRLGRR 727
MRRLGRR
Sbjct: 721 MRRLGRR 727
>pir||B71009 hypothetical protein PH1368 - Pyrococcus horikoshii
>gi|3257791|dbj|BAA30474.1| (AP000006) 728aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 728
Score = 800 bits (2043), Expect = 0.0
Identities = 393/729 (53%), Positives = 535/729 (72%), Gaps = 14/729 (1%)
Query: 8 LAFVLLAMLTTPIL----AKERTITVFEGKILPGEKLIVGNYTVEVAFDTSKNPYIIVWR 63
LA +L+ +L TP + AKE I +F+G+ILP E+LI+GNYT+ V F PY+IV
Sbjct: 5 LALLLVLLLLTPSIKLSTAKEVNIVIFKGRILPQERLIIGNYTITVEFGIDNFPYVIVSN 64
Query: 64 GDRKVAINRAVFGSRVEINNLTLVIGGYD-EKGLTVVVSWKSEGRSYSLRVGRYIQGFKV 122
G K+ I RA FG+ + I NL++ IG Y+ KGL +V SW SEG + +VGRY +GF+V
Sbjct: 65 GTSKLVIERAEFGASITIENLSITIGSYNARKGLFIVASWSSEGEKHVAKVGRYFEGFEV 124
Query: 123 VNISNSSITLGKDSSTFDIPKGVLTKLENFAFEFNGTTLTVYELPRVTLEKKIEEKSEII 182
+ ++NSS+TL + +T ++PK L + ++ T+ +Y+LP V ++KK E+ E++
Sbjct: 125 ITVTNSSVTLKRGITTIEVPKDKLILYGRYGIRYSNGTIFLYKLPSVEVKKK--EERELV 182
Query: 183 VSYPFEEARIELGKTITVPIVVFNNGTQNVTLELS-AESSKGIEVKFLYQGIEVKTIKLR 241
V YP+ E E+ ++I +P+ +FNNGT+ V + S + K +VKF YQGIE+K +KLR
Sbjct: 183 VFYPYSEVTTEVNRSIMLPLTIFNNGTETVNVTFSVVNAPKDWDVKFYYQGIEIKKLKLR 242
Query: 242 GKETTSLQLLITPKDIKAGKYDVKFSIGNKTYKIFIDV--KGKEPLEIITPIISQDSEAG 299
KE+ +LQL + P AG + VKFSI Y +++V E L+I PI+ Q++EAG
Sbjct: 243 EKESITLQLKVLPS--SAGSHVVKFSINGDIYSFYVNVVQPKMEALKITAPILVQEAEAG 300
Query: 300 TQVQFPITLLAHSDVIISIESKVPENWESYTLMDGVRIREAYLSSESQKVINLLVEVPRN 359
++V F + L A D +IS++ + P +W++ L+DGVR +E YL KV+NL++E+PRN
Sbjct: 301 SKVTFSVLLSAGEDSVISMDVREPRDWKACILVDGVRAQEIYLRRGETKVVNLILEIPRN 360
Query: 360 ADLGYHQIELNIVGRDPNNLSVVFNKTLVFGVNVYKTYKGQNATLKLIVVDDLGNPVPRA 419
A LGY++ +++ R N V+ N+T+ GVN+YKTYKGQ ATLKLI+VDD G+PVP+A
Sbjct: 361 ASLGYYESKISFTVRKSNG-EVIKNETITLGVNIYKTYKGQKATLKLILVDDTGSPVPKA 419
Query: 420 LVKIGEQEYLTDSSGTLEVEIKPGEYNVNISKEGYEQKKESIKLGDGETKEIKITLTRKA 479
LVK+G + Y TDS+GTLEVE+ PG+Y + I KEGYE KKE ++LGDGE KE+K+ L R+
Sbjct: 420 LVKVGNESYATDSTGTLEVEMNPGKYVITIEKEGYETKKEEVELGDGEKKELKLLLVREP 479
Query: 480 YYFTVDTKSDIYPIFL-GSPSSFSINIENLGKNDDEYKLELVGFPENWNYIFTESPESKL 538
YYF V+ +SDIYPI + G F+I IENLGK+DDEYKLE+ G PENWN FTES E +
Sbjct: 480 YYFNVEAQSDIYPIVMEGLSRPFTIVIENLGKSDDEYKLEIRGIPENWNAFFTESAEGNI 539
Query: 539 EITRVKVKAGESRTVYLQVYPSLNAMPGDYNVTIIVKSSSGLTRKVPIKIKLTGFYNMDV 598
E+T+VKVK+GE++TVYL+VYPSLNAMPG YN TI V SSSG+ +++P+KIKL G YNM+V
Sbjct: 540 EVTKVKVKSGETKTVYLKVYPSLNAMPGTYNATITVISSSGIKKEIPVKIKLIGSYNMNV 599
Query: 599 RLMNYRLTITAGEEKGTSINIWNFGNAPLTNIKITVNGPQGWEIRVDKSLIPSLPPKGNV 658
L+NYRLTITAGEEK ++I+NFGNAPLTN+KITV GPQGW+++VD S IPSL PKG
Sbjct: 600 NLLNYRLTITAGEEKTAMMDIFNFGNAPLTNLKITVKGPQGWDVKVDPSQIPSLSPKGRE 659
Query: 659 NVPITIKVPEGTTAGDYRIRISVKSDQAEWSDTLRVVVKQRSTSTYIGVLILVLAFGLVI 718
V IT+KVPEGT AGDYR++I+VK+DQAEW DTLRVVV+QRSTSTYIGVLIL+++F LV+
Sbjct: 660 RVTITVKVPEGTPAGDYRVQITVKADQAEWQDTLRVVVRQRSTSTYIGVLILIISFALVL 719
Query: 719 FMMRRLGRR 727
FMMRR+GRR
Sbjct: 720 FMMRRIGRR 728
>gi|11498738 A. fulgidus predicted coding region AF1138 [Archaeoglobus fulgidus]
>gi|7483558|pir||A69392 hypothetical protein AF1138 -
Archaeoglobus fulgidus >gi|2649453|gb|AAB90109.1|
(AE001025) A. fulgidus predicted coding region AF1138
[Archaeoglobus fulgidus]
Length = 554
Score = 206 bits (519), Expect = 7e-52
Identities = 141/541 (26%), Positives = 257/541 (47%), Gaps = 26/541 (4%)
Query: 195 GKTITVPIVVFNNGTQNVTLELSAESSKG-IEVKFLYQGIEVKTIKLRGKETTSLQLLIT 253
G+ +++P+ V N+ T +LS G E F Y G V +++L E+ L
Sbjct: 32 GEEVSIPLTVKNDEGNESTFQLSYSFWYGEAEGYFYYNGQRVNSLRLNSSESADLTFKFL 91
Query: 254 PKDIKAGKYDVKFSIGNKTYKIFIDVKGKEPLEIITPIISQDSEAGTQVQFPITL--LAH 311
+ Y + G+ + +++ K PL I +E G V+ L +
Sbjct: 92 APEKPGRYYLYLHADGSAGVTVNVELPEK-PLRISLDNTGIVAEGGDVVEVNALLENTLN 150
Query: 312 SDVIISIESKVPENWESYTLMDGVRIREAYLSSESQKVINLLVEVPRNADLGYHQIELNI 371
S + + + P+ WE V + + E K + + V++ AD+G + + L+I
Sbjct: 151 SPIEVDLSCDAPKGWECRFYDGDVEVYRTVVG-EGGKQLRVQVDIDSTADVGKYAVTLHI 209
Query: 372 VGRDPNNLSVVFNKTLVFGVNVYKTYKGQNATLKLIVVDDLGNPVPRALVKIGEQEYLTD 431
+ T F V V +++ G+ ++L VVD G V A + G + + T
Sbjct: 210 GPQ-----------TKEFEVFVKESHAGEKGEVRLRVVDKDGEGVASARITAGNETFFTS 258
Query: 432 SSGTLEVEIKPGEYNVNISKEGYEQKK-ESIKLGDGETKEI-KITLTRKAYYFTVDTKSD 489
G E++PG Y++ I K GY +K +K+ G T ++ + L +KAYY + S
Sbjct: 259 GDGEAIFEVEPGTYDLKIEKGGYYEKTIRDVKVRGGRTNDLGTVFLEKKAYYAELSVSSS 318
Query: 490 IYPIFLGSPSSFSINIENLGKNDDEYKLELVGFPENWNYIFTESPESKLEITRVKVKAGE 549
+ +G +S ++ IEN G +D+Y L L G P ++ Y F E +L ++ V ++ GE
Sbjct: 319 RITVSIGDVASLNVRIENRGYGEDQYALSLEGLPPDFTYNFREG---ELAVSEVYLEGGE 375
Query: 550 SRTVYLQVYPSLNAMPGDYNVTIIVKSSSGLTRKVPIKI--KLTGFYNMDVRLMNYRLTI 607
+ + L++Y A GDY++ I+ K + + + + ++ +++++ + Y +
Sbjct: 376 EKDITLEIYTPATAEVGDYSLKIVAKGKYTAEKDLKLSVVGRMAAYFSLEGGM--YTVKA 433
Query: 608 TAGEEKGTSINIWNFGNA-PLTNIKITVNGPQGWEIRVDKSLIPSLPPKGNVNVPITIKV 666
+ GEE + N G LTN+K+ + PQGW V +IPS+ P V + I+V
Sbjct: 434 SPGEELELKGYVENSGRGVTLTNVKVKLELPQGWSGEVSPEVIPSVKPGERGEVNLRIRV 493
Query: 667 PEGTTAGDYRIRISVKSDQAEWSDTLRVVVKQRSTSTYIGVLILVLAFGLVIFMMRRLGR 726
P +YRI + SDQ SD + VVV + S +T++G+ I+ + +I +++++GR
Sbjct: 494 PPDAKPSEYRITVETTSDQMTMSDRISVVVGESSAATFVGLGIIAVTILALIILIKKVGR 553
Query: 727 R 727
R
Sbjct: 554 R 554
>dbj|BAB06934.1| (AP001518) unknown conserved protein in others [Bacillus
halodurans]
Length = 385
Score = 88.2 bits (215), Expect = 3e-16
Identities = 66/266 (24%), Positives = 121/266 (44%), Gaps = 14/266 (5%)
Query: 468 TKEIKITLTRKAYYFT-VDTKSDIYPIFLGSPSSFSINIENLGKNDDEYKLELVGFPENW 526
T ++ +++T + + T + TK S S+++ + N Y L + W
Sbjct: 128 TLDLAVSVTEQGSFETELTTKQGNLEGHADSTFSYTVTLSNKTAEAQNYALSNSA-DDGW 186
Query: 527 NYIFTESPESKLEITRVKVKAGESRTVYLQVYPSLNAMPGDYNVTIIVKSSSGLTRKVPI 586
F S +T + + S + ++V P N Y + I ++ + V +
Sbjct: 187 GVRFLSEGNS---VTSLSLDPNTSTDLTVEVTPPENVEADTYEIPITASTTDSNSELV-L 242
Query: 587 KIKLTGFYNMDVRLMNYRLT--ITAGEEKGTSINIWNFGNAPLTNIKITVNGPQGWEIRV 644
+ +TG Y ++V L +TAG+++ + I N G APLT+I ++V+ P WE+
Sbjct: 243 EAVVTGSYGIEVTTPTGVLNTDMTAGDDQTIELVITNTGTAPLTDINLSVDAPSEWEVEF 302
Query: 645 DKSLIPSLPPKGNVNVPITIKVPEGTTAGDYRIRISVKSDQAEWSDTLRVVVKQRSTSTY 704
D++ I L P + V T+ P+ AGDY + +D+ T R+ V TST
Sbjct: 303 DENTIADLEPGDSKTVKATVTAPKDAIAGDYVATFTASTDETSSDATFRISV---GTSTV 359
Query: 705 IGVLILVLAFGLV---IFMMRRLGRR 727
G++ + + G+V ++R+ GRR
Sbjct: 360 WGIVSIAIILGVVGGLYSIIRKFGRR 385
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.381
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262641974
Number of Sequences: 2977
Number of extensions: 11585467
Number of successful extensions: 29266
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29242
Number of HSP's gapped (non-prelim): 9
length of query: 727
length of database: 189,106,746
effective HSP length: 61
effective length of query: 666
effective length of database: 152,599,039
effective search space: 101630959974
effective search space used: 101630959974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 168 (69.9 bits)