BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3002 (secE) DE:PROTEIN TRANSLOCASE, SUBUNIT SEC61 GAMMA
(SECE)
         (61 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75184 protein translocase, chain sec61 gamma (sece) PAB300...   122  4e-28

>pir||H75184 protein translocase, chain sec61 gamma (sece) PAB3002 -
          Pyrococcus abyssi (strain Orsay)
          >gi|5457436|emb|CAB48927.1| (AJ248283) PROTEIN
          TRANSLOCASE, SUBUNIT SEC61 GAMMA (SECE) [Pyrococcus
          abyssi]
          Length = 61
          
 Score =  122 bits (304), Expect = 4e-28
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MPELQERIRNFLKESKRVFLVTRKPGWEEYKKAAKITGLGIILIGLIGMLIRIMGILVLG 60
          MPELQERIRNFLKESKRVFLVTRKPGWEEYKKAAKITGLGIILIGLIGMLIRIMGILVLG
Sbjct: 1  MPELQERIRNFLKESKRVFLVTRKPGWEEYKKAAKITGLGIILIGLIGMLIRIMGILVLG 60

Query: 61 G 61
          G
Sbjct: 61 G 61


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.150    0.431 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20654453
Number of Sequences: 2977
Number of extensions: 624667
Number of successful extensions: 2532
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2531
Number of HSP's gapped (non-prelim): 1
length of query: 61
length of database: 189,106,746
effective HSP length: 40
effective length of query: 21
effective length of database: 165,167,266
effective search space: 3468512586
effective search space used: 3468512586
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)