BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB3009 (EF-1-BETA) DE:translation elongation factor EF-1,
subunit beta
         (91 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75188 translation elongation factor ef-1, chain beta PAB30...   180  3e-45
sp|O27734|EF1B_METTH ELONGATION FACTOR 1-BETA (EF-1-BETA) >gi|74...    67  4e-11

>pir||A75188 translation elongation factor ef-1, chain beta PAB3009 -
          Pyrococcus abyssi (strain Orsay)
          >gi|5457461|emb|CAB48952.1| (AJ248283) translation
          elongation factor EF-1, subunit beta [Pyrococcus
          abyssi]
          Length = 91
          
 Score =  180 bits (451), Expect = 3e-45
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MSDFNIVGVIKVMPSDPEVNLDELEEKLKAVIPEKYGLAKVEREPIAFGLVALKFYVLGK 60
          MSDFNIVGVIKVMPSDPEVNLDELEEKLKAVIPEKYGLAKVEREPIAFGLVALKFYVLGK
Sbjct: 1  MSDFNIVGVIKVMPSDPEVNLDELEEKLKAVIPEKYGLAKVEREPIAFGLVALKFYVLGK 60

Query: 61 DEEGYSFDEVAEKFKEVENVESAEVETVSRI 91
          DEEGYSFDEVAEKFKEVENVESAEVETVSRI
Sbjct: 61 DEEGYSFDEVAEKFKEVENVESAEVETVSRI 91


>sp|O27734|EF1B_METTH ELONGATION FACTOR 1-BETA (EF-1-BETA) >gi|7450715|pir||B69094
          conserved hypothetical protein MTH1699 -
          Methanobacterium thermoautotrophicum (strain Delta H)
          >gi|10120770|pdb|1D5K|A Chain A, Solution Structure Of
          The Archaeal Translation Elongation Factor 1beta From
          Methanobacterium Thermoautotrophicum
          >gi|2622830|gb|AAB86171.1| (AE000927) translation
          elongation factor EF-1b [Methanobacterium
          thermoautotrophicum]
          Length = 89
          
 Score = 66.7 bits (160), Expect = 4e-11
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 5  NIVGVIKVMPSDPEVNLDELEEKLKAVIPEKYGLAKVEREPIAFGLVALKFYVLGKDEEG 64
          ++V  IKVMP  P+V+L+ L+++++  IPE   L K++ EPIAFGLVAL   V+  D EG
Sbjct: 3  DVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEG 62

Query: 65 YSFDEVAEKFKEVENVESAEVETVSRI 91
             +   E    +E V + EV  V R+
Sbjct: 63 -GTEAAEESLSGIEGVSNIEVTDVRRL 88


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.312    0.136    0.358 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31692642
Number of Sequences: 2977
Number of extensions: 1139296
Number of successful extensions: 2640
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2639
Number of HSP's gapped (non-prelim): 2
length of query: 91
length of database: 189,106,746
effective HSP length: 57
effective length of query: 34
effective length of database: 154,992,987
effective search space: 5269761558
effective search space used: 5269761558
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 157 (65.6 bits)